Multiple sequence alignment - TraesCS5D01G316000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G316000 chr5D 100.000 3625 0 0 1 3625 410067771 410064147 0.000000e+00 6695.0
1 TraesCS5D01G316000 chr5B 92.359 3141 160 33 1 3102 491854858 491851759 0.000000e+00 4397.0
2 TraesCS5D01G316000 chr5B 84.472 805 102 19 1089 1879 491623524 491624319 0.000000e+00 773.0
3 TraesCS5D01G316000 chr5B 88.073 654 72 4 1956 2603 491630844 491631497 0.000000e+00 771.0
4 TraesCS5D01G316000 chr5B 89.256 484 25 6 1 482 491856002 491855544 6.750000e-162 580.0
5 TraesCS5D01G316000 chr5B 89.050 484 26 6 1 482 491855430 491854972 3.140000e-160 575.0
6 TraesCS5D01G316000 chr5B 79.870 154 11 7 3475 3625 491851549 491851413 1.070000e-15 95.3
7 TraesCS5D01G316000 chr5A 92.860 2773 125 47 206 2943 521302025 521299291 0.000000e+00 3956.0
8 TraesCS5D01G316000 chr5A 87.309 654 65 7 1956 2603 521289964 521290605 0.000000e+00 732.0
9 TraesCS5D01G316000 chr5A 83.168 808 113 22 1089 1880 521288231 521289031 0.000000e+00 717.0
10 TraesCS5D01G316000 chr5A 80.000 480 76 10 2928 3393 521297494 521297021 1.610000e-88 337.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G316000 chr5D 410064147 410067771 3624 True 6695.000 6695 100.00000 1 3625 1 chr5D.!!$R1 3624
1 TraesCS5D01G316000 chr5B 491851413 491856002 4589 True 1411.825 4397 87.63375 1 3625 4 chr5B.!!$R1 3624
2 TraesCS5D01G316000 chr5B 491623524 491624319 795 False 773.000 773 84.47200 1089 1879 1 chr5B.!!$F1 790
3 TraesCS5D01G316000 chr5B 491630844 491631497 653 False 771.000 771 88.07300 1956 2603 1 chr5B.!!$F2 647
4 TraesCS5D01G316000 chr5A 521297021 521302025 5004 True 2146.500 3956 86.43000 206 3393 2 chr5A.!!$R1 3187
5 TraesCS5D01G316000 chr5A 521288231 521290605 2374 False 724.500 732 85.23850 1089 2603 2 chr5A.!!$F1 1514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 1515 0.099968 CCGTGGATGCTGCTTGAATG 59.900 55.000 0.0 0.0 0.00 2.67 F
382 1523 0.455005 GCTGCTTGAATGAAGAGGCC 59.545 55.000 0.0 0.0 32.82 5.19 F
605 1750 1.212935 AGCAGCAATATTCCCGTCCTT 59.787 47.619 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 3104 2.033407 CAGTCAACAACAGAACAGAGCG 60.033 50.000 0.00 0.0 0.00 5.03 R
2195 4215 3.093278 CCGAAGATGCGCTTGACC 58.907 61.111 9.73 0.0 36.83 4.02 R
2665 4697 1.728971 GGTGCTCGTTCTGAATCACAG 59.271 52.381 13.10 0.0 46.97 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.592688 TCCTCCTAAGTTGAAGTTTGTTTGG 59.407 40.000 0.00 0.00 0.00 3.28
63 636 1.061546 AAAAGGCTACCCGGTGAAGA 58.938 50.000 0.00 0.00 35.76 2.87
72 645 1.672363 ACCCGGTGAAGAAACGAAAAC 59.328 47.619 0.00 0.00 0.00 2.43
75 648 2.598205 CCGGTGAAGAAACGAAAACGAC 60.598 50.000 0.00 0.00 0.00 4.34
77 650 3.604392 GGTGAAGAAACGAAAACGACTG 58.396 45.455 0.00 0.00 0.00 3.51
81 654 5.615982 GTGAAGAAACGAAAACGACTGAATC 59.384 40.000 0.00 0.00 0.00 2.52
90 663 1.194781 ACGACTGAATCCTGTGCCCT 61.195 55.000 0.00 0.00 0.00 5.19
159 732 5.242838 TCCTTGCTTTGTTCGGTTATCATTT 59.757 36.000 0.00 0.00 0.00 2.32
170 743 5.466819 TCGGTTATCATTTCGCCATAGTAG 58.533 41.667 0.00 0.00 0.00 2.57
183 756 4.093703 CGCCATAGTAGTAGCTGCTAGTAG 59.906 50.000 24.73 16.27 32.69 2.57
184 757 4.142556 GCCATAGTAGTAGCTGCTAGTAGC 60.143 50.000 24.73 23.71 44.01 3.58
201 1338 2.166907 AGCCTAGTACTGCCTGTGAT 57.833 50.000 5.39 0.00 0.00 3.06
373 1514 1.033746 CCCGTGGATGCTGCTTGAAT 61.034 55.000 0.00 0.00 0.00 2.57
374 1515 0.099968 CCGTGGATGCTGCTTGAATG 59.900 55.000 0.00 0.00 0.00 2.67
375 1516 1.089112 CGTGGATGCTGCTTGAATGA 58.911 50.000 0.00 0.00 0.00 2.57
377 1518 2.477357 CGTGGATGCTGCTTGAATGAAG 60.477 50.000 0.00 0.00 34.41 3.02
378 1519 2.751259 GTGGATGCTGCTTGAATGAAGA 59.249 45.455 0.00 0.00 32.82 2.87
380 1521 2.358267 GGATGCTGCTTGAATGAAGAGG 59.642 50.000 0.00 0.00 32.82 3.69
381 1522 1.171308 TGCTGCTTGAATGAAGAGGC 58.829 50.000 0.00 0.00 32.82 4.70
382 1523 0.455005 GCTGCTTGAATGAAGAGGCC 59.545 55.000 0.00 0.00 32.82 5.19
383 1524 1.830279 CTGCTTGAATGAAGAGGCCA 58.170 50.000 5.01 0.00 32.82 5.36
405 1546 1.454479 CACCTGCATCCATGGTCCC 60.454 63.158 12.58 1.47 30.72 4.46
449 1592 3.961414 TTCACTTGTCCCGGCCCC 61.961 66.667 0.00 0.00 0.00 5.80
605 1750 1.212935 AGCAGCAATATTCCCGTCCTT 59.787 47.619 0.00 0.00 0.00 3.36
704 1849 1.481056 AAGTTACTGAGCCCCAGCGT 61.481 55.000 3.85 0.00 46.81 5.07
930 2079 4.807039 CCCCGTCCGTTACAGCCG 62.807 72.222 0.00 0.00 0.00 5.52
1052 2201 1.544691 CTACTACTGCCTGGTGTTCGT 59.455 52.381 0.00 0.00 0.00 3.85
1628 2780 3.678915 TGCTGACATATCATTGTTGCG 57.321 42.857 0.00 0.00 34.36 4.85
1633 2796 3.100817 GACATATCATTGTTGCGTGTGC 58.899 45.455 0.00 0.00 43.20 4.57
1921 3104 4.142687 CGTGATACCACCACCAAAAGAATC 60.143 45.833 0.00 0.00 40.12 2.52
2543 4569 2.202892 GGGCGGACGGTGAAGATC 60.203 66.667 0.00 0.00 0.00 2.75
2665 4697 5.444481 GCCAATAATTTGTTGTTGCGTCATC 60.444 40.000 5.34 0.00 0.00 2.92
2671 4703 2.493035 TGTTGTTGCGTCATCTGTGAT 58.507 42.857 0.00 0.00 36.60 3.06
2674 4706 2.765122 TGTTGCGTCATCTGTGATTCA 58.235 42.857 0.00 0.00 36.60 2.57
2734 4810 3.928727 TCGTGTCGGTGACTTCTATTT 57.071 42.857 0.00 0.00 33.15 1.40
2744 4820 4.517285 GTGACTTCTATTTCTGGCCATCA 58.483 43.478 5.51 0.00 0.00 3.07
2788 4864 3.134127 GCCGCCACCTGTTCATCC 61.134 66.667 0.00 0.00 0.00 3.51
2802 4878 0.105964 TCATCCTCTTCCTCCTCCCG 60.106 60.000 0.00 0.00 0.00 5.14
2803 4879 1.458588 ATCCTCTTCCTCCTCCCGC 60.459 63.158 0.00 0.00 0.00 6.13
2804 4880 3.532155 CCTCTTCCTCCTCCCGCG 61.532 72.222 0.00 0.00 0.00 6.46
2805 4881 2.440430 CTCTTCCTCCTCCCGCGA 60.440 66.667 8.23 0.00 0.00 5.87
2806 4882 1.830408 CTCTTCCTCCTCCCGCGAT 60.830 63.158 8.23 0.00 0.00 4.58
2807 4883 2.081425 CTCTTCCTCCTCCCGCGATG 62.081 65.000 8.23 0.00 0.00 3.84
2881 4958 1.443407 CTCGACCTTCGCCCATCAT 59.557 57.895 0.00 0.00 40.21 2.45
2882 4959 0.179073 CTCGACCTTCGCCCATCATT 60.179 55.000 0.00 0.00 40.21 2.57
2888 4965 0.099968 CTTCGCCCATCATTGTGCTG 59.900 55.000 0.00 0.00 0.00 4.41
2917 4994 1.561542 CACAACCATCCCTCTAAGCCT 59.438 52.381 0.00 0.00 0.00 4.58
2918 4995 1.840635 ACAACCATCCCTCTAAGCCTC 59.159 52.381 0.00 0.00 0.00 4.70
2919 4996 1.839994 CAACCATCCCTCTAAGCCTCA 59.160 52.381 0.00 0.00 0.00 3.86
2921 4998 2.334023 ACCATCCCTCTAAGCCTCATC 58.666 52.381 0.00 0.00 0.00 2.92
2922 4999 2.090267 ACCATCCCTCTAAGCCTCATCT 60.090 50.000 0.00 0.00 0.00 2.90
2926 6346 1.611491 CCCTCTAAGCCTCATCTCGAC 59.389 57.143 0.00 0.00 0.00 4.20
2992 6881 4.957684 CGGCTCGGCATCGCAGAT 62.958 66.667 0.00 0.00 45.12 2.90
2998 6887 0.937304 TCGGCATCGCAGATAAAAGC 59.063 50.000 0.00 0.00 45.12 3.51
3015 6904 3.577649 AAGCGACCGATATGATAGTGG 57.422 47.619 0.00 0.00 0.00 4.00
3022 6914 5.048643 CGACCGATATGATAGTGGAGAGTTT 60.049 44.000 0.36 0.00 0.00 2.66
3024 6916 5.048643 ACCGATATGATAGTGGAGAGTTTCG 60.049 44.000 0.36 0.00 0.00 3.46
3034 6926 2.296471 TGGAGAGTTTCGTCCTTCTCAC 59.704 50.000 10.29 0.00 38.21 3.51
3099 6998 1.214367 TTTTCGAAGCACGTCAGGTC 58.786 50.000 0.00 0.00 43.13 3.85
3122 7021 5.939883 TCCCTGAAATAAATCATCTATGCCG 59.060 40.000 0.00 0.00 0.00 5.69
3144 7043 3.118261 GGTCACTTCTATTCTGGCCATCA 60.118 47.826 5.51 0.00 29.43 3.07
3159 7058 3.434739 GGCCATCAGATCAAGATCCAACT 60.435 47.826 0.00 0.00 38.58 3.16
3164 7063 5.488262 TCAGATCAAGATCCAACTGTCAA 57.512 39.130 6.45 0.00 38.58 3.18
3167 7066 6.429078 TCAGATCAAGATCCAACTGTCAAAAG 59.571 38.462 6.45 0.00 38.58 2.27
3169 7068 4.464008 TCAAGATCCAACTGTCAAAAGCT 58.536 39.130 0.00 0.00 0.00 3.74
3170 7069 5.620206 TCAAGATCCAACTGTCAAAAGCTA 58.380 37.500 0.00 0.00 0.00 3.32
3171 7070 5.470098 TCAAGATCCAACTGTCAAAAGCTAC 59.530 40.000 0.00 0.00 0.00 3.58
3172 7071 4.973168 AGATCCAACTGTCAAAAGCTACA 58.027 39.130 0.00 0.00 0.00 2.74
3173 7072 5.564550 AGATCCAACTGTCAAAAGCTACAT 58.435 37.500 0.00 0.00 0.00 2.29
3174 7073 6.711277 AGATCCAACTGTCAAAAGCTACATA 58.289 36.000 0.00 0.00 0.00 2.29
3175 7074 7.341805 AGATCCAACTGTCAAAAGCTACATAT 58.658 34.615 0.00 0.00 0.00 1.78
3178 7077 6.939730 TCCAACTGTCAAAAGCTACATATTCA 59.060 34.615 0.00 0.00 0.00 2.57
3179 7078 7.611467 TCCAACTGTCAAAAGCTACATATTCAT 59.389 33.333 0.00 0.00 0.00 2.57
3181 7080 8.671921 CAACTGTCAAAAGCTACATATTCATCT 58.328 33.333 0.00 0.00 0.00 2.90
3183 7082 9.890629 ACTGTCAAAAGCTACATATTCATCTTA 57.109 29.630 0.00 0.00 0.00 2.10
3186 7085 9.604626 GTCAAAAGCTACATATTCATCTTATGC 57.395 33.333 0.00 0.00 31.54 3.14
3187 7086 8.786898 TCAAAAGCTACATATTCATCTTATGCC 58.213 33.333 0.00 0.00 31.54 4.40
3188 7087 8.570488 CAAAAGCTACATATTCATCTTATGCCA 58.430 33.333 0.00 0.00 31.54 4.92
3210 7116 5.222358 CCACCCATATCTACTTCCTCCTCTA 60.222 48.000 0.00 0.00 0.00 2.43
3213 7119 4.944930 CCATATCTACTTCCTCCTCTACCG 59.055 50.000 0.00 0.00 0.00 4.02
3215 7121 0.945813 CTACTTCCTCCTCTACCGCG 59.054 60.000 0.00 0.00 0.00 6.46
3251 7157 1.227853 GCGGCCTACCCAACCATAG 60.228 63.158 0.00 0.00 0.00 2.23
3265 7171 2.182842 CATAGCCACCTGCCTTCGC 61.183 63.158 0.00 0.00 42.71 4.70
3270 7176 3.399181 CACCTGCCTTCGCCCCTA 61.399 66.667 0.00 0.00 0.00 3.53
3300 7206 0.036022 CTATAGCCTCCTTGCTGCCC 59.964 60.000 0.00 0.00 42.77 5.36
3301 7207 0.400525 TATAGCCTCCTTGCTGCCCT 60.401 55.000 0.00 0.00 42.77 5.19
3311 7217 3.492353 GCTGCCCTGCCCTCCATA 61.492 66.667 0.00 0.00 0.00 2.74
3312 7218 2.512896 CTGCCCTGCCCTCCATAC 59.487 66.667 0.00 0.00 0.00 2.39
3318 7224 2.687200 TGCCCTCCATACACCGCT 60.687 61.111 0.00 0.00 0.00 5.52
3323 7229 3.757248 CTCCATACACCGCTGCCCC 62.757 68.421 0.00 0.00 0.00 5.80
3324 7230 4.108299 CCATACACCGCTGCCCCA 62.108 66.667 0.00 0.00 0.00 4.96
3325 7231 2.045438 CATACACCGCTGCCCCAA 60.045 61.111 0.00 0.00 0.00 4.12
3327 7233 3.638592 ATACACCGCTGCCCCAACC 62.639 63.158 0.00 0.00 0.00 3.77
3330 7236 4.299796 ACCGCTGCCCCAACCATT 62.300 61.111 0.00 0.00 0.00 3.16
3343 7252 2.555199 CAACCATTCCTCTAAGCCTCG 58.445 52.381 0.00 0.00 0.00 4.63
3349 7258 0.040646 TCCTCTAAGCCTCGTCCCAA 59.959 55.000 0.00 0.00 0.00 4.12
3361 7270 1.418264 TCGTCCCAATGAACAACTCCA 59.582 47.619 0.00 0.00 0.00 3.86
3364 7273 2.031157 GTCCCAATGAACAACTCCAACG 60.031 50.000 0.00 0.00 0.00 4.10
3369 7278 1.658994 TGAACAACTCCAACGACCAC 58.341 50.000 0.00 0.00 0.00 4.16
3370 7279 0.942252 GAACAACTCCAACGACCACC 59.058 55.000 0.00 0.00 0.00 4.61
3373 7282 2.073716 AACTCCAACGACCACCCCA 61.074 57.895 0.00 0.00 0.00 4.96
3393 7302 4.379499 CCCATTAGGTTTCGAACTTGCTTC 60.379 45.833 0.00 0.00 0.00 3.86
3394 7303 4.379499 CCATTAGGTTTCGAACTTGCTTCC 60.379 45.833 0.00 0.00 0.00 3.46
3395 7304 1.605753 AGGTTTCGAACTTGCTTCCC 58.394 50.000 0.00 0.00 0.00 3.97
3396 7305 0.596577 GGTTTCGAACTTGCTTCCCC 59.403 55.000 0.00 0.00 0.00 4.81
3397 7306 0.596577 GTTTCGAACTTGCTTCCCCC 59.403 55.000 0.00 0.00 0.00 5.40
3398 7307 0.183971 TTTCGAACTTGCTTCCCCCA 59.816 50.000 0.00 0.00 0.00 4.96
3399 7308 0.536460 TTCGAACTTGCTTCCCCCAC 60.536 55.000 0.00 0.00 0.00 4.61
3400 7309 1.971695 CGAACTTGCTTCCCCCACC 60.972 63.158 0.00 0.00 0.00 4.61
3401 7310 1.460699 GAACTTGCTTCCCCCACCT 59.539 57.895 0.00 0.00 0.00 4.00
3402 7311 0.696501 GAACTTGCTTCCCCCACCTA 59.303 55.000 0.00 0.00 0.00 3.08
3403 7312 1.285078 GAACTTGCTTCCCCCACCTAT 59.715 52.381 0.00 0.00 0.00 2.57
3404 7313 0.919710 ACTTGCTTCCCCCACCTATC 59.080 55.000 0.00 0.00 0.00 2.08
3405 7314 0.179045 CTTGCTTCCCCCACCTATCG 60.179 60.000 0.00 0.00 0.00 2.92
3406 7315 0.619255 TTGCTTCCCCCACCTATCGA 60.619 55.000 0.00 0.00 0.00 3.59
3407 7316 1.335132 TGCTTCCCCCACCTATCGAC 61.335 60.000 0.00 0.00 0.00 4.20
3408 7317 1.740285 CTTCCCCCACCTATCGACG 59.260 63.158 0.00 0.00 0.00 5.12
3409 7318 1.745320 CTTCCCCCACCTATCGACGG 61.745 65.000 0.00 0.00 0.00 4.79
3410 7319 3.925090 CCCCCACCTATCGACGGC 61.925 72.222 2.63 0.00 0.00 5.68
3411 7320 2.838225 CCCCACCTATCGACGGCT 60.838 66.667 2.63 0.00 0.00 5.52
3412 7321 2.728817 CCCACCTATCGACGGCTC 59.271 66.667 2.63 0.00 0.00 4.70
3413 7322 2.728817 CCACCTATCGACGGCTCC 59.271 66.667 2.63 0.00 0.00 4.70
3414 7323 2.728817 CACCTATCGACGGCTCCC 59.271 66.667 2.63 0.00 0.00 4.30
3415 7324 2.125326 CACCTATCGACGGCTCCCA 61.125 63.158 2.63 0.00 0.00 4.37
3416 7325 2.125961 ACCTATCGACGGCTCCCAC 61.126 63.158 2.63 0.00 0.00 4.61
3417 7326 1.828660 CCTATCGACGGCTCCCACT 60.829 63.158 0.00 0.00 0.00 4.00
3418 7327 1.392710 CCTATCGACGGCTCCCACTT 61.393 60.000 0.00 0.00 0.00 3.16
3419 7328 0.249073 CTATCGACGGCTCCCACTTG 60.249 60.000 0.00 0.00 0.00 3.16
3420 7329 0.968901 TATCGACGGCTCCCACTTGT 60.969 55.000 0.00 0.00 0.00 3.16
3421 7330 0.968901 ATCGACGGCTCCCACTTGTA 60.969 55.000 0.00 0.00 0.00 2.41
3422 7331 1.445582 CGACGGCTCCCACTTGTAC 60.446 63.158 0.00 0.00 0.00 2.90
3423 7332 1.669440 GACGGCTCCCACTTGTACA 59.331 57.895 0.00 0.00 0.00 2.90
3424 7333 0.249398 GACGGCTCCCACTTGTACAT 59.751 55.000 0.00 0.00 0.00 2.29
3425 7334 0.036388 ACGGCTCCCACTTGTACATG 60.036 55.000 7.18 7.18 0.00 3.21
3426 7335 0.744414 CGGCTCCCACTTGTACATGG 60.744 60.000 12.86 10.62 35.59 3.66
3427 7336 1.032114 GGCTCCCACTTGTACATGGC 61.032 60.000 9.64 4.59 34.37 4.40
3428 7337 0.035056 GCTCCCACTTGTACATGGCT 60.035 55.000 9.64 0.00 34.37 4.75
3429 7338 2.014068 GCTCCCACTTGTACATGGCTC 61.014 57.143 9.64 0.00 34.37 4.70
3435 7344 1.071699 ACTTGTACATGGCTCCGTTGT 59.928 47.619 12.86 0.98 0.00 3.32
3440 7349 2.933287 ATGGCTCCGTTGTCCCCA 60.933 61.111 0.00 0.00 0.00 4.96
3442 7351 3.637273 GGCTCCGTTGTCCCCACT 61.637 66.667 0.00 0.00 0.00 4.00
3478 7387 2.741759 AAAATCCCACGCATGAAACC 57.258 45.000 0.00 0.00 0.00 3.27
3479 7388 0.525761 AAATCCCACGCATGAAACCG 59.474 50.000 0.00 0.00 0.00 4.44
3480 7389 0.608035 AATCCCACGCATGAAACCGT 60.608 50.000 0.00 0.00 38.35 4.83
3481 7390 0.608035 ATCCCACGCATGAAACCGTT 60.608 50.000 0.00 0.00 35.17 4.44
3482 7391 0.820074 TCCCACGCATGAAACCGTTT 60.820 50.000 0.00 0.00 35.17 3.60
3483 7392 0.031449 CCCACGCATGAAACCGTTTT 59.969 50.000 0.00 0.00 35.17 2.43
3484 7393 1.404477 CCACGCATGAAACCGTTTTC 58.596 50.000 0.00 0.00 41.49 2.29
3491 7407 5.204833 CGCATGAAACCGTTTTCTATATGG 58.795 41.667 6.99 0.00 41.64 2.74
3496 7412 6.654959 TGAAACCGTTTTCTATATGGATCCA 58.345 36.000 18.88 18.88 41.64 3.41
3517 7433 9.390795 GATCCAATCAAAATTCATATCTCAACG 57.609 33.333 0.00 0.00 0.00 4.10
3518 7434 8.279970 TCCAATCAAAATTCATATCTCAACGT 57.720 30.769 0.00 0.00 0.00 3.99
3519 7435 8.739039 TCCAATCAAAATTCATATCTCAACGTT 58.261 29.630 0.00 0.00 0.00 3.99
3531 7450 5.888412 ATCTCAACGTTTGATTTTGTTGC 57.112 34.783 0.00 0.00 41.03 4.17
3556 7475 0.899720 CCATGATTTGGCAGGCAAGT 59.100 50.000 9.70 7.00 39.09 3.16
3557 7476 1.134907 CCATGATTTGGCAGGCAAGTC 60.135 52.381 21.42 21.42 39.09 3.01
3558 7477 1.546923 CATGATTTGGCAGGCAAGTCA 59.453 47.619 29.45 29.45 33.86 3.41
3559 7478 0.961019 TGATTTGGCAGGCAAGTCAC 59.039 50.000 25.48 12.25 0.00 3.67
3560 7479 0.109597 GATTTGGCAGGCAAGTCACG 60.110 55.000 22.77 0.00 0.00 4.35
3561 7480 0.823356 ATTTGGCAGGCAAGTCACGT 60.823 50.000 9.70 0.00 0.00 4.49
3562 7481 1.723608 TTTGGCAGGCAAGTCACGTG 61.724 55.000 9.94 9.94 0.00 4.49
3563 7482 2.280797 GGCAGGCAAGTCACGTGA 60.281 61.111 15.76 15.76 0.00 4.35
3564 7483 1.672356 GGCAGGCAAGTCACGTGAT 60.672 57.895 23.12 3.16 0.00 3.06
3565 7484 1.237285 GGCAGGCAAGTCACGTGATT 61.237 55.000 23.12 15.55 0.00 2.57
3566 7485 0.110056 GCAGGCAAGTCACGTGATTG 60.110 55.000 23.12 23.89 0.00 2.67
3567 7486 1.229428 CAGGCAAGTCACGTGATTGT 58.771 50.000 23.12 6.88 0.00 2.71
3568 7487 1.603802 CAGGCAAGTCACGTGATTGTT 59.396 47.619 23.12 12.80 0.00 2.83
3569 7488 2.805671 CAGGCAAGTCACGTGATTGTTA 59.194 45.455 23.12 0.00 0.00 2.41
3574 7493 5.013236 GCAAGTCACGTGATTGTTATTACG 58.987 41.667 23.12 5.11 45.92 3.18
3588 7507 5.424757 TGTTATTACGAGCAACTATTGGCT 58.575 37.500 0.00 0.00 44.48 4.75
3590 7509 3.328382 TTACGAGCAACTATTGGCTGT 57.672 42.857 0.00 0.00 41.22 4.40
3591 7510 2.185004 ACGAGCAACTATTGGCTGTT 57.815 45.000 0.00 0.00 41.22 3.16
3593 7512 3.000727 ACGAGCAACTATTGGCTGTTAC 58.999 45.455 0.00 0.00 41.22 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.527567 TTGAAACCAAACAAACTTCAACTTAG 57.472 30.769 0.00 0.00 32.54 2.18
10 11 7.793927 TTTGAAACCAAACAAACTTCAACTT 57.206 28.000 0.00 0.00 36.13 2.66
27 28 5.817296 AGCCTTTTGAATTGGAGTTTGAAAC 59.183 36.000 0.00 0.00 0.00 2.78
39 40 2.167662 CACCGGGTAGCCTTTTGAATT 58.832 47.619 6.32 0.00 0.00 2.17
63 636 3.875134 ACAGGATTCAGTCGTTTTCGTTT 59.125 39.130 0.00 0.00 44.46 3.60
72 645 0.036010 AAGGGCACAGGATTCAGTCG 60.036 55.000 0.00 0.00 0.00 4.18
75 648 1.815003 GAACAAGGGCACAGGATTCAG 59.185 52.381 0.00 0.00 0.00 3.02
77 650 1.815003 CAGAACAAGGGCACAGGATTC 59.185 52.381 0.00 0.00 0.00 2.52
81 654 1.915141 ATTCAGAACAAGGGCACAGG 58.085 50.000 0.00 0.00 0.00 4.00
90 663 1.073125 TCCCTCCGCAATTCAGAACAA 59.927 47.619 0.00 0.00 0.00 2.83
159 732 1.982660 AGCAGCTACTACTATGGCGA 58.017 50.000 0.00 0.00 0.00 5.54
183 756 2.799917 CGAATCACAGGCAGTACTAGGC 60.800 54.545 0.00 2.83 0.00 3.93
184 757 2.688446 TCGAATCACAGGCAGTACTAGG 59.312 50.000 0.00 0.00 0.00 3.02
201 1338 1.271656 GTTTCTCCGGGAACTCTCGAA 59.728 52.381 0.00 0.00 33.13 3.71
236 1373 0.172578 TCGCTATCACTGTCCCAACG 59.827 55.000 0.00 0.00 0.00 4.10
300 1441 3.605749 TTGGACGTAGCTGCTGGCC 62.606 63.158 13.43 8.82 43.05 5.36
373 1514 1.887956 GCAGGTGAATTGGCCTCTTCA 60.888 52.381 14.27 14.27 31.73 3.02
374 1515 0.813821 GCAGGTGAATTGGCCTCTTC 59.186 55.000 3.32 7.63 31.73 2.87
375 1516 0.112995 TGCAGGTGAATTGGCCTCTT 59.887 50.000 3.32 0.00 31.73 2.85
377 1518 0.743097 GATGCAGGTGAATTGGCCTC 59.257 55.000 3.32 0.00 31.73 4.70
378 1519 0.685458 GGATGCAGGTGAATTGGCCT 60.685 55.000 3.32 0.00 35.04 5.19
380 1521 1.117150 ATGGATGCAGGTGAATTGGC 58.883 50.000 0.00 0.00 0.00 4.52
381 1522 1.411246 CCATGGATGCAGGTGAATTGG 59.589 52.381 5.56 0.00 0.00 3.16
382 1523 2.100252 GACCATGGATGCAGGTGAATTG 59.900 50.000 21.47 0.00 35.36 2.32
383 1524 2.381911 GACCATGGATGCAGGTGAATT 58.618 47.619 21.47 0.00 35.36 2.17
643 1788 2.952783 CCGGTCCGATAACGCACG 60.953 66.667 14.39 0.00 38.29 5.34
712 1857 2.714387 GGACGAGGACGATCGGTC 59.286 66.667 20.98 15.55 46.91 4.79
713 1858 2.827642 GGGACGAGGACGATCGGT 60.828 66.667 20.98 6.88 46.91 4.69
930 2079 1.597027 ATATACTGCCAACGCCGCC 60.597 57.895 0.00 0.00 0.00 6.13
984 2133 0.667993 CCATGCCGTCTCTCTCTCTC 59.332 60.000 0.00 0.00 0.00 3.20
985 2134 0.754957 CCCATGCCGTCTCTCTCTCT 60.755 60.000 0.00 0.00 0.00 3.10
1628 2780 2.264794 CCTCCCGTACCTGCACAC 59.735 66.667 0.00 0.00 0.00 3.82
1633 2796 2.656069 CCACACCCTCCCGTACCTG 61.656 68.421 0.00 0.00 0.00 4.00
1921 3104 2.033407 CAGTCAACAACAGAACAGAGCG 60.033 50.000 0.00 0.00 0.00 5.03
2195 4215 3.093278 CCGAAGATGCGCTTGACC 58.907 61.111 9.73 0.00 36.83 4.02
2665 4697 1.728971 GGTGCTCGTTCTGAATCACAG 59.271 52.381 13.10 0.00 46.97 3.66
2744 4820 5.508825 GCTTCTCACCGTCAGATATTGATCT 60.509 44.000 0.00 0.00 43.63 2.75
2755 4831 2.355837 GCACGCTTCTCACCGTCA 60.356 61.111 0.00 0.00 35.17 4.35
2788 4864 1.830408 ATCGCGGGAGGAGGAAGAG 60.830 63.158 6.13 0.00 0.00 2.85
2802 4878 1.153147 GGGAAGGAGGAACCATCGC 60.153 63.158 0.00 0.00 40.82 4.58
2803 4879 1.527370 GGGGAAGGAGGAACCATCG 59.473 63.158 0.00 0.00 42.04 3.84
2804 4880 1.527370 CGGGGAAGGAGGAACCATC 59.473 63.158 0.00 0.00 42.04 3.51
2805 4881 2.680370 GCGGGGAAGGAGGAACCAT 61.680 63.158 0.00 0.00 42.04 3.55
2806 4882 3.327404 GCGGGGAAGGAGGAACCA 61.327 66.667 0.00 0.00 42.04 3.67
2807 4883 4.468689 CGCGGGGAAGGAGGAACC 62.469 72.222 0.00 0.00 39.35 3.62
2832 4909 0.336048 ACGGTAGGTGGTTAGGGCTA 59.664 55.000 0.00 0.00 0.00 3.93
2881 4958 4.182433 TGGCGGTGGTCAGCACAA 62.182 61.111 9.67 0.00 36.53 3.33
2882 4959 4.927782 GTGGCGGTGGTCAGCACA 62.928 66.667 9.67 0.00 36.53 4.57
2888 4965 2.282180 ATGGTTGTGGCGGTGGTC 60.282 61.111 0.00 0.00 0.00 4.02
2917 4994 2.242769 CGAGTTGTTCGTCGAGATGA 57.757 50.000 0.00 0.00 44.27 2.92
2992 6881 5.242171 TCCACTATCATATCGGTCGCTTTTA 59.758 40.000 0.00 0.00 0.00 1.52
2998 6887 4.004314 ACTCTCCACTATCATATCGGTCG 58.996 47.826 0.00 0.00 0.00 4.79
3007 6896 3.698289 AGGACGAAACTCTCCACTATCA 58.302 45.455 0.00 0.00 0.00 2.15
3015 6904 3.366577 GGAGTGAGAAGGACGAAACTCTC 60.367 52.174 0.00 0.00 0.00 3.20
3022 6914 1.166129 CGAAGGAGTGAGAAGGACGA 58.834 55.000 0.00 0.00 0.00 4.20
3084 6976 2.432628 GGGACCTGACGTGCTTCG 60.433 66.667 0.00 0.84 46.00 3.79
3096 6988 6.151817 GGCATAGATGATTTATTTCAGGGACC 59.848 42.308 0.00 0.00 0.00 4.46
3099 6998 5.124457 CCGGCATAGATGATTTATTTCAGGG 59.876 44.000 0.00 0.00 0.00 4.45
3107 7006 4.955811 AGTGACCGGCATAGATGATTTA 57.044 40.909 0.00 0.00 0.00 1.40
3109 7008 3.389329 AGAAGTGACCGGCATAGATGATT 59.611 43.478 0.00 0.00 0.00 2.57
3116 7015 3.069586 CCAGAATAGAAGTGACCGGCATA 59.930 47.826 0.00 0.00 0.00 3.14
3117 7016 2.158900 CCAGAATAGAAGTGACCGGCAT 60.159 50.000 0.00 0.00 0.00 4.40
3122 7021 3.118261 TGATGGCCAGAATAGAAGTGACC 60.118 47.826 13.05 0.00 0.00 4.02
3144 7043 5.182760 GCTTTTGACAGTTGGATCTTGATCT 59.817 40.000 10.03 0.00 0.00 2.75
3164 7063 7.175641 GGTGGCATAAGATGAATATGTAGCTTT 59.824 37.037 0.00 0.00 34.06 3.51
3167 7066 5.355350 GGGTGGCATAAGATGAATATGTAGC 59.645 44.000 0.00 0.00 34.06 3.58
3169 7068 6.446909 TGGGTGGCATAAGATGAATATGTA 57.553 37.500 0.00 0.00 34.06 2.29
3170 7069 5.323382 TGGGTGGCATAAGATGAATATGT 57.677 39.130 0.00 0.00 34.06 2.29
3171 7070 7.997223 AGATATGGGTGGCATAAGATGAATATG 59.003 37.037 0.00 0.00 34.55 1.78
3172 7071 8.110743 AGATATGGGTGGCATAAGATGAATAT 57.889 34.615 0.00 0.00 0.00 1.28
3173 7072 7.515004 AGATATGGGTGGCATAAGATGAATA 57.485 36.000 0.00 0.00 0.00 1.75
3174 7073 6.398655 AGATATGGGTGGCATAAGATGAAT 57.601 37.500 0.00 0.00 0.00 2.57
3175 7074 5.848286 AGATATGGGTGGCATAAGATGAA 57.152 39.130 0.00 0.00 0.00 2.57
3178 7077 6.069963 GGAAGTAGATATGGGTGGCATAAGAT 60.070 42.308 0.00 0.00 0.00 2.40
3179 7078 5.248477 GGAAGTAGATATGGGTGGCATAAGA 59.752 44.000 0.00 0.00 0.00 2.10
3181 7080 5.162637 AGGAAGTAGATATGGGTGGCATAA 58.837 41.667 0.00 0.00 0.00 1.90
3183 7082 3.584848 GAGGAAGTAGATATGGGTGGCAT 59.415 47.826 0.00 0.00 0.00 4.40
3184 7083 2.972713 GAGGAAGTAGATATGGGTGGCA 59.027 50.000 0.00 0.00 0.00 4.92
3185 7084 2.303311 GGAGGAAGTAGATATGGGTGGC 59.697 54.545 0.00 0.00 0.00 5.01
3186 7085 3.835395 GAGGAGGAAGTAGATATGGGTGG 59.165 52.174 0.00 0.00 0.00 4.61
3187 7086 4.746466 AGAGGAGGAAGTAGATATGGGTG 58.254 47.826 0.00 0.00 0.00 4.61
3188 7087 5.222379 GGTAGAGGAGGAAGTAGATATGGGT 60.222 48.000 0.00 0.00 0.00 4.51
3213 7119 2.125633 GGAAGGAGGAACCGTCGC 60.126 66.667 0.00 0.00 45.72 5.19
3215 7121 2.987962 GGGGAAGGAGGAACCGTC 59.012 66.667 0.00 0.00 44.41 4.79
3238 7144 1.134098 CAGGTGGCTATGGTTGGGTAG 60.134 57.143 0.00 0.00 0.00 3.18
3295 7201 2.377810 TGTATGGAGGGCAGGGCAG 61.378 63.158 0.00 0.00 0.00 4.85
3296 7202 2.286045 TGTATGGAGGGCAGGGCA 60.286 61.111 0.00 0.00 0.00 5.36
3300 7206 2.203070 GCGGTGTATGGAGGGCAG 60.203 66.667 0.00 0.00 0.00 4.85
3301 7207 2.687200 AGCGGTGTATGGAGGGCA 60.687 61.111 0.00 0.00 0.00 5.36
3307 7213 3.636929 TTGGGGCAGCGGTGTATGG 62.637 63.158 17.07 0.00 0.00 2.74
3318 7224 1.284785 CTTAGAGGAATGGTTGGGGCA 59.715 52.381 0.00 0.00 0.00 5.36
3323 7229 2.093447 ACGAGGCTTAGAGGAATGGTTG 60.093 50.000 0.00 0.00 0.00 3.77
3324 7230 2.168728 GACGAGGCTTAGAGGAATGGTT 59.831 50.000 0.00 0.00 0.00 3.67
3325 7231 1.757699 GACGAGGCTTAGAGGAATGGT 59.242 52.381 0.00 0.00 0.00 3.55
3327 7233 1.069358 GGGACGAGGCTTAGAGGAATG 59.931 57.143 0.00 0.00 0.00 2.67
3329 7235 0.040646 TGGGACGAGGCTTAGAGGAA 59.959 55.000 0.00 0.00 0.00 3.36
3330 7236 0.040646 TTGGGACGAGGCTTAGAGGA 59.959 55.000 0.00 0.00 0.00 3.71
3343 7252 2.031157 CGTTGGAGTTGTTCATTGGGAC 60.031 50.000 0.00 0.00 0.00 4.46
3349 7258 2.218603 GTGGTCGTTGGAGTTGTTCAT 58.781 47.619 0.00 0.00 0.00 2.57
3361 7270 1.069775 AACCTAATGGGGTGGTCGTT 58.930 50.000 0.00 0.00 39.85 3.85
3364 7273 1.279846 TCGAAACCTAATGGGGTGGTC 59.720 52.381 0.00 0.00 39.85 4.02
3369 7278 2.163613 GCAAGTTCGAAACCTAATGGGG 59.836 50.000 0.00 0.00 40.03 4.96
3370 7279 3.081804 AGCAAGTTCGAAACCTAATGGG 58.918 45.455 0.00 0.00 41.89 4.00
3373 7282 3.756963 GGGAAGCAAGTTCGAAACCTAAT 59.243 43.478 0.00 0.00 35.80 1.73
3393 7302 3.925090 GCCGTCGATAGGTGGGGG 61.925 72.222 10.88 0.00 0.00 5.40
3394 7303 2.838225 AGCCGTCGATAGGTGGGG 60.838 66.667 10.88 0.00 0.00 4.96
3395 7304 2.728817 GAGCCGTCGATAGGTGGG 59.271 66.667 10.88 0.00 0.00 4.61
3396 7305 2.728817 GGAGCCGTCGATAGGTGG 59.271 66.667 10.88 0.00 0.00 4.61
3397 7306 2.125326 TGGGAGCCGTCGATAGGTG 61.125 63.158 10.88 0.00 0.00 4.00
3398 7307 2.125961 GTGGGAGCCGTCGATAGGT 61.126 63.158 10.88 0.71 0.00 3.08
3399 7308 1.392710 AAGTGGGAGCCGTCGATAGG 61.393 60.000 5.62 5.62 0.00 2.57
3400 7309 0.249073 CAAGTGGGAGCCGTCGATAG 60.249 60.000 0.00 0.00 0.00 2.08
3401 7310 0.968901 ACAAGTGGGAGCCGTCGATA 60.969 55.000 0.00 0.00 0.00 2.92
3402 7311 0.968901 TACAAGTGGGAGCCGTCGAT 60.969 55.000 0.00 0.00 0.00 3.59
3403 7312 1.604308 TACAAGTGGGAGCCGTCGA 60.604 57.895 0.00 0.00 0.00 4.20
3404 7313 1.445582 GTACAAGTGGGAGCCGTCG 60.446 63.158 0.00 0.00 0.00 5.12
3405 7314 0.249398 ATGTACAAGTGGGAGCCGTC 59.751 55.000 0.00 0.00 0.00 4.79
3406 7315 0.036388 CATGTACAAGTGGGAGCCGT 60.036 55.000 0.00 0.00 0.00 5.68
3407 7316 0.744414 CCATGTACAAGTGGGAGCCG 60.744 60.000 7.51 0.00 0.00 5.52
3408 7317 1.032114 GCCATGTACAAGTGGGAGCC 61.032 60.000 15.66 0.00 36.00 4.70
3409 7318 0.035056 AGCCATGTACAAGTGGGAGC 60.035 55.000 15.66 3.39 36.00 4.70
3410 7319 1.407437 GGAGCCATGTACAAGTGGGAG 60.407 57.143 15.66 0.00 36.00 4.30
3411 7320 0.618458 GGAGCCATGTACAAGTGGGA 59.382 55.000 15.66 0.00 36.00 4.37
3412 7321 0.744414 CGGAGCCATGTACAAGTGGG 60.744 60.000 15.66 9.16 36.00 4.61
3413 7322 0.036388 ACGGAGCCATGTACAAGTGG 60.036 55.000 10.64 10.64 38.55 4.00
3414 7323 1.464608 CAACGGAGCCATGTACAAGTG 59.535 52.381 0.00 0.00 0.00 3.16
3415 7324 1.071699 ACAACGGAGCCATGTACAAGT 59.928 47.619 0.00 0.00 0.00 3.16
3416 7325 1.732259 GACAACGGAGCCATGTACAAG 59.268 52.381 0.00 0.00 0.00 3.16
3417 7326 1.609580 GGACAACGGAGCCATGTACAA 60.610 52.381 0.00 0.00 0.00 2.41
3418 7327 0.036765 GGACAACGGAGCCATGTACA 60.037 55.000 0.00 0.00 0.00 2.90
3419 7328 0.743345 GGGACAACGGAGCCATGTAC 60.743 60.000 0.00 0.00 0.00 2.90
3420 7329 1.600107 GGGACAACGGAGCCATGTA 59.400 57.895 0.00 0.00 0.00 2.29
3421 7330 2.351276 GGGACAACGGAGCCATGT 59.649 61.111 0.00 0.00 0.00 3.21
3422 7331 2.438434 GGGGACAACGGAGCCATG 60.438 66.667 0.00 0.00 0.00 3.66
3423 7332 2.933287 TGGGGACAACGGAGCCAT 60.933 61.111 0.00 0.00 37.44 4.40
3424 7333 3.948719 GTGGGGACAACGGAGCCA 61.949 66.667 0.00 0.00 46.06 4.75
3425 7334 1.623542 ATAGTGGGGACAACGGAGCC 61.624 60.000 0.00 0.00 46.06 4.70
3426 7335 1.068741 CTATAGTGGGGACAACGGAGC 59.931 57.143 0.00 0.00 46.06 4.70
3427 7336 2.662866 TCTATAGTGGGGACAACGGAG 58.337 52.381 0.00 0.00 46.06 4.63
3428 7337 2.832643 TCTATAGTGGGGACAACGGA 57.167 50.000 0.00 0.00 46.06 4.69
3429 7338 4.417426 AAATCTATAGTGGGGACAACGG 57.583 45.455 0.00 0.00 46.06 4.44
3461 7370 0.608035 ACGGTTTCATGCGTGGGATT 60.608 50.000 5.98 0.00 0.00 3.01
3462 7371 0.608035 AACGGTTTCATGCGTGGGAT 60.608 50.000 5.98 0.00 0.00 3.85
3465 7374 1.001815 AGAAAACGGTTTCATGCGTGG 60.002 47.619 26.71 0.00 44.82 4.94
3466 7375 2.399396 AGAAAACGGTTTCATGCGTG 57.601 45.000 26.71 0.00 44.82 5.34
3467 7376 5.220777 CCATATAGAAAACGGTTTCATGCGT 60.221 40.000 26.71 9.13 44.82 5.24
3469 7378 6.371809 TCCATATAGAAAACGGTTTCATGC 57.628 37.500 26.71 1.20 44.82 4.06
3471 7380 7.287061 TGGATCCATATAGAAAACGGTTTCAT 58.713 34.615 26.71 18.90 44.82 2.57
3472 7381 6.654959 TGGATCCATATAGAAAACGGTTTCA 58.345 36.000 26.71 13.61 44.82 2.69
3475 7384 7.287061 TGATTGGATCCATATAGAAAACGGTT 58.713 34.615 17.06 0.00 0.00 4.44
3477 7386 7.744087 TTGATTGGATCCATATAGAAAACGG 57.256 36.000 17.06 0.00 0.00 4.44
3491 7407 9.390795 CGTTGAGATATGAATTTTGATTGGATC 57.609 33.333 0.00 0.00 0.00 3.36
3507 7423 7.144661 TGCAACAAAATCAAACGTTGAGATAT 58.855 30.769 14.59 6.64 43.98 1.63
3512 7428 5.845985 TTTGCAACAAAATCAAACGTTGA 57.154 30.435 0.00 1.91 45.01 3.18
3517 7433 4.918037 TGGCATTTGCAACAAAATCAAAC 58.082 34.783 0.00 0.00 44.36 2.93
3518 7434 5.298527 TCATGGCATTTGCAACAAAATCAAA 59.701 32.000 0.00 0.00 44.36 2.69
3519 7435 4.820173 TCATGGCATTTGCAACAAAATCAA 59.180 33.333 0.00 0.00 44.36 2.57
3521 7437 5.554822 ATCATGGCATTTGCAACAAAATC 57.445 34.783 0.00 0.00 44.36 2.17
3522 7438 5.968528 AATCATGGCATTTGCAACAAAAT 57.031 30.435 0.00 0.00 44.36 1.82
3554 7473 4.561606 GCTCGTAATAACAATCACGTGACT 59.438 41.667 22.71 7.18 35.91 3.41
3556 7475 4.487019 TGCTCGTAATAACAATCACGTGA 58.513 39.130 22.48 22.48 35.91 4.35
3557 7476 4.833469 TGCTCGTAATAACAATCACGTG 57.167 40.909 9.94 9.94 35.91 4.49
3558 7477 4.927425 AGTTGCTCGTAATAACAATCACGT 59.073 37.500 0.00 0.00 35.91 4.49
3559 7478 5.450376 AGTTGCTCGTAATAACAATCACG 57.550 39.130 0.00 0.00 35.78 4.35
3560 7479 7.850982 CCAATAGTTGCTCGTAATAACAATCAC 59.149 37.037 0.00 0.00 0.00 3.06
3561 7480 7.466725 GCCAATAGTTGCTCGTAATAACAATCA 60.467 37.037 0.00 0.00 0.00 2.57
3562 7481 6.851330 GCCAATAGTTGCTCGTAATAACAATC 59.149 38.462 0.00 0.00 0.00 2.67
3563 7482 6.542370 AGCCAATAGTTGCTCGTAATAACAAT 59.458 34.615 0.00 0.00 30.33 2.71
3564 7483 5.878116 AGCCAATAGTTGCTCGTAATAACAA 59.122 36.000 0.00 0.00 30.33 2.83
3565 7484 5.293324 CAGCCAATAGTTGCTCGTAATAACA 59.707 40.000 0.00 0.00 35.12 2.41
3566 7485 5.293569 ACAGCCAATAGTTGCTCGTAATAAC 59.706 40.000 0.00 0.00 35.12 1.89
3567 7486 5.424757 ACAGCCAATAGTTGCTCGTAATAA 58.575 37.500 0.00 0.00 35.12 1.40
3568 7487 5.018539 ACAGCCAATAGTTGCTCGTAATA 57.981 39.130 0.00 0.00 35.12 0.98
3569 7488 3.873910 ACAGCCAATAGTTGCTCGTAAT 58.126 40.909 0.00 0.00 35.12 1.89
3574 7493 3.343617 TGGTAACAGCCAATAGTTGCTC 58.656 45.455 0.00 0.00 46.17 4.26
3590 7509 3.068873 GCTTTGAATGGTGGTTGTGGTAA 59.931 43.478 0.00 0.00 0.00 2.85
3591 7510 2.625790 GCTTTGAATGGTGGTTGTGGTA 59.374 45.455 0.00 0.00 0.00 3.25
3593 7512 1.602668 CGCTTTGAATGGTGGTTGTGG 60.603 52.381 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.