Multiple sequence alignment - TraesCS5D01G315600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G315600 chr5D 100.000 3374 0 0 1 3374 409940925 409937552 0.000000e+00 6231.0
1 TraesCS5D01G315600 chr5D 89.448 417 29 9 1434 1848 79989472 79989875 2.320000e-141 512.0
2 TraesCS5D01G315600 chr5D 100.000 42 0 0 2010 2051 399617762 399617721 1.000000e-10 78.7
3 TraesCS5D01G315600 chr5D 97.674 43 1 0 2084 2126 418073756 418073714 1.300000e-09 75.0
4 TraesCS5D01G315600 chr5B 90.723 1908 110 35 1 1867 491585449 491583568 0.000000e+00 2481.0
5 TraesCS5D01G315600 chr5B 84.950 505 52 16 2215 2713 491583206 491582720 1.090000e-134 490.0
6 TraesCS5D01G315600 chr5B 79.159 547 61 26 2726 3255 491582623 491582113 2.510000e-86 329.0
7 TraesCS5D01G315600 chr5B 95.349 43 2 0 2084 2126 478675897 478675939 6.040000e-08 69.4
8 TraesCS5D01G315600 chr5A 87.188 1920 133 37 1 1867 521024028 521022169 0.000000e+00 2078.0
9 TraesCS5D01G315600 chr5A 80.412 1067 113 35 2215 3257 521021937 521020943 0.000000e+00 725.0
10 TraesCS5D01G315600 chr4B 92.351 353 18 6 1533 1880 235739075 235739423 8.410000e-136 494.0
11 TraesCS5D01G315600 chr4B 88.030 401 33 10 1434 1826 397268326 397267933 8.530000e-126 460.0
12 TraesCS5D01G315600 chr7A 88.249 417 36 8 1434 1848 397427662 397427257 1.410000e-133 486.0
13 TraesCS5D01G315600 chr7A 90.988 344 25 4 1533 1874 474142841 474142502 3.070000e-125 459.0
14 TraesCS5D01G315600 chr7A 100.000 34 0 0 3339 3372 725126489 725126456 2.810000e-06 63.9
15 TraesCS5D01G315600 chr7B 92.353 340 22 3 1533 1871 604278722 604279058 6.550000e-132 481.0
16 TraesCS5D01G315600 chr7B 100.000 29 0 0 3346 3374 558643490 558643518 2.000000e-03 54.7
17 TraesCS5D01G315600 chr3B 87.740 416 36 10 1436 1848 290616457 290616860 3.940000e-129 472.0
18 TraesCS5D01G315600 chr3B 93.333 45 3 0 2082 2126 672075553 672075597 2.170000e-07 67.6
19 TraesCS5D01G315600 chr3B 91.489 47 4 0 2084 2130 64244419 64244465 7.810000e-07 65.8
20 TraesCS5D01G315600 chr6D 88.295 393 32 10 1437 1822 294671096 294670711 3.070000e-125 459.0
21 TraesCS5D01G315600 chr2A 92.655 177 12 1 1147 1323 739439862 739439687 1.550000e-63 254.0
22 TraesCS5D01G315600 chr6A 95.745 47 2 0 2083 2129 69348488 69348534 3.610000e-10 76.8
23 TraesCS5D01G315600 chr1D 95.652 46 2 0 2082 2127 95868880 95868925 1.300000e-09 75.0
24 TraesCS5D01G315600 chr1B 95.652 46 2 0 2082 2127 156850699 156850654 1.300000e-09 75.0
25 TraesCS5D01G315600 chr3A 97.500 40 1 0 2087 2126 684878819 684878858 6.040000e-08 69.4
26 TraesCS5D01G315600 chr2D 89.796 49 5 0 2081 2129 79384642 79384594 2.810000e-06 63.9
27 TraesCS5D01G315600 chr3D 100.000 30 0 0 3345 3374 305746439 305746468 4.700000e-04 56.5
28 TraesCS5D01G315600 chr4A 100.000 28 0 0 3347 3374 2034793 2034766 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G315600 chr5D 409937552 409940925 3373 True 6231.0 6231 100.000 1 3374 1 chr5D.!!$R2 3373
1 TraesCS5D01G315600 chr5B 491582113 491585449 3336 True 1100.0 2481 84.944 1 3255 3 chr5B.!!$R1 3254
2 TraesCS5D01G315600 chr5A 521020943 521024028 3085 True 1401.5 2078 83.800 1 3257 2 chr5A.!!$R1 3256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 578 0.60813 TGACACGTCTGGATCCTTGG 59.392 55.0 14.23 3.5 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2535 2741 0.032217 ATCCATCATTTGCGGGGGTT 60.032 50.0 0.0 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.266510 TCTCCGCATTAAGCATGAACT 57.733 42.857 0.00 0.00 46.13 3.01
51 52 7.851822 TGAACTGTTTTGATTATTCGCTTTC 57.148 32.000 0.00 0.00 0.00 2.62
109 110 5.648092 AGCTATGGCGTTTTGTCTTAATCTT 59.352 36.000 0.00 0.00 44.37 2.40
134 135 4.456911 TCACGGTATCACGGAGTAATATCC 59.543 45.833 0.00 0.00 41.61 2.59
144 145 9.765795 ATCACGGAGTAATATCCTTTTAGAAAG 57.234 33.333 0.00 0.00 41.61 2.62
192 193 3.679980 GCTTATTCAGACGAAGCACTTCA 59.320 43.478 10.78 0.00 44.05 3.02
242 243 2.303890 TGATGGACTCTGCAATCACAGT 59.696 45.455 0.00 0.00 38.84 3.55
253 254 5.814188 TCTGCAATCACAGTATCATCACTTC 59.186 40.000 0.00 0.00 38.84 3.01
310 311 7.964624 ACTAGTAGGAGTTAATATTTCCTGCC 58.035 38.462 14.88 7.42 42.55 4.85
311 312 7.790314 ACTAGTAGGAGTTAATATTTCCTGCCT 59.210 37.037 14.88 12.60 42.55 4.75
394 395 4.423625 AGAAAACACAAGTGTAGCCTCT 57.576 40.909 6.24 3.92 44.13 3.69
421 422 3.147595 CTGGGCTGGATCGACGGA 61.148 66.667 0.00 0.00 0.00 4.69
422 423 2.443952 TGGGCTGGATCGACGGAT 60.444 61.111 0.00 0.00 34.96 4.18
432 433 5.310720 TGGATCGACGGATGATATACTTG 57.689 43.478 0.00 0.00 31.51 3.16
509 510 3.063180 GTGGAAAGATGACGATTGCAGAG 59.937 47.826 0.00 0.00 0.00 3.35
514 515 4.063998 AGATGACGATTGCAGAGCATAA 57.936 40.909 0.00 0.00 38.76 1.90
570 578 0.608130 TGACACGTCTGGATCCTTGG 59.392 55.000 14.23 3.50 0.00 3.61
591 599 4.074970 GGCACTCTCTTTTCCTTTGATCA 58.925 43.478 0.00 0.00 0.00 2.92
639 649 7.985589 ACGTTTTAGGGATTCATAGGGATAAT 58.014 34.615 0.00 0.00 0.00 1.28
641 651 7.277981 CGTTTTAGGGATTCATAGGGATAATCG 59.722 40.741 0.00 0.00 31.70 3.34
703 713 1.338769 ACCTACGTGCTGGTGGATTTC 60.339 52.381 0.00 0.00 34.90 2.17
704 714 1.369625 CTACGTGCTGGTGGATTTCC 58.630 55.000 0.00 0.00 0.00 3.13
729 744 6.087159 CGATGATGATAATCCGTTTGCATTTG 59.913 38.462 0.00 0.00 0.00 2.32
753 768 8.450578 TGTTGTGACAAAGATGATAATATCCC 57.549 34.615 0.00 0.00 31.49 3.85
770 785 2.528743 CCCTCGTGCTGCTTATGCG 61.529 63.158 0.00 0.00 43.34 4.73
827 845 7.337942 ACTTGGATGATGATGATGATGATGATG 59.662 37.037 0.00 0.00 0.00 3.07
828 846 6.957631 TGGATGATGATGATGATGATGATGA 58.042 36.000 0.00 0.00 0.00 2.92
829 847 7.577303 TGGATGATGATGATGATGATGATGAT 58.423 34.615 0.00 0.00 0.00 2.45
830 848 8.713971 TGGATGATGATGATGATGATGATGATA 58.286 33.333 0.00 0.00 0.00 2.15
831 849 9.561069 GGATGATGATGATGATGATGATGATAA 57.439 33.333 0.00 0.00 0.00 1.75
841 859 3.982475 TGATGATGATAACAGTCTCGGC 58.018 45.455 0.00 0.00 0.00 5.54
861 879 2.848302 GCGTACATCTCATTTTGCTTGC 59.152 45.455 0.00 0.00 0.00 4.01
880 898 3.652274 TGCAAGGCAGCTTGAAAATTAC 58.348 40.909 6.87 0.00 36.50 1.89
881 899 3.321682 TGCAAGGCAGCTTGAAAATTACT 59.678 39.130 6.87 0.00 36.50 2.24
882 900 4.522405 TGCAAGGCAGCTTGAAAATTACTA 59.478 37.500 6.87 0.00 36.50 1.82
1238 1293 1.375908 TCGCCGAGTGGTACGTACT 60.376 57.895 24.07 7.47 37.67 2.73
1239 1294 0.108377 TCGCCGAGTGGTACGTACTA 60.108 55.000 24.07 16.71 37.67 1.82
1240 1295 0.302890 CGCCGAGTGGTACGTACTAG 59.697 60.000 24.07 8.49 37.67 2.57
1422 1477 1.694169 GAAGGGCCTCTCATGGGGA 60.694 63.158 6.46 0.00 0.00 4.81
1431 1486 2.487986 CCTCTCATGGGGAATGGTAAGC 60.488 54.545 0.00 0.00 36.86 3.09
1513 1568 9.588096 TGTGGATAATGTATGTATCTGTAGACT 57.412 33.333 0.00 0.00 0.00 3.24
1514 1569 9.847706 GTGGATAATGTATGTATCTGTAGACTG 57.152 37.037 0.00 0.00 0.00 3.51
1599 1654 3.262420 CTTCACCCGATGATTTCTTCGT 58.738 45.455 12.87 0.00 40.52 3.85
1629 1684 6.931838 ACTAATCATACGTGTTTCTTCAGGA 58.068 36.000 0.00 0.00 0.00 3.86
1630 1685 7.036220 ACTAATCATACGTGTTTCTTCAGGAG 58.964 38.462 0.00 0.00 0.00 3.69
1680 1735 3.552273 CCATTGAGATGGCTATTGCAAGC 60.552 47.826 4.94 3.09 45.96 4.01
1724 1779 1.605232 TCATGTGCTGCTTGTTCACTG 59.395 47.619 0.00 0.00 0.00 3.66
1836 2003 6.017275 AGTCTCTCGAGGTAACATATTAACCG 60.017 42.308 13.56 0.00 41.41 4.44
1862 2029 2.680577 CAAAGCAGTTGCATTCCCTTC 58.319 47.619 6.90 0.00 45.16 3.46
1867 2034 1.153958 GTTGCATTCCCTTCGCTGC 60.154 57.895 0.00 0.00 35.21 5.25
1869 2036 0.035534 TTGCATTCCCTTCGCTGCTA 60.036 50.000 0.00 0.00 35.66 3.49
1870 2037 0.035534 TGCATTCCCTTCGCTGCTAA 60.036 50.000 0.00 0.00 35.66 3.09
1872 2039 1.017387 CATTCCCTTCGCTGCTAACC 58.983 55.000 0.00 0.00 0.00 2.85
1877 2058 2.438021 TCCCTTCGCTGCTAACCAATAT 59.562 45.455 0.00 0.00 0.00 1.28
1878 2059 2.808543 CCCTTCGCTGCTAACCAATATC 59.191 50.000 0.00 0.00 0.00 1.63
1890 2071 7.389232 TGCTAACCAATATCATCATCTACCTG 58.611 38.462 0.00 0.00 0.00 4.00
1891 2072 6.314896 GCTAACCAATATCATCATCTACCTGC 59.685 42.308 0.00 0.00 0.00 4.85
1894 2075 4.521146 CAATATCATCATCTACCTGCCCC 58.479 47.826 0.00 0.00 0.00 5.80
1896 2077 1.891933 TCATCATCTACCTGCCCCAA 58.108 50.000 0.00 0.00 0.00 4.12
1897 2078 1.770658 TCATCATCTACCTGCCCCAAG 59.229 52.381 0.00 0.00 0.00 3.61
1910 2094 0.829990 CCCCAAGTTTTGTGGCTGTT 59.170 50.000 0.00 0.00 34.56 3.16
1911 2095 2.035632 CCCCAAGTTTTGTGGCTGTTA 58.964 47.619 0.00 0.00 34.56 2.41
1917 2104 6.276847 CCAAGTTTTGTGGCTGTTATTTGTA 58.723 36.000 0.00 0.00 0.00 2.41
1920 2107 8.825745 CAAGTTTTGTGGCTGTTATTTGTAAAT 58.174 29.630 0.00 0.00 0.00 1.40
1923 2110 6.777526 TTGTGGCTGTTATTTGTAAATTGC 57.222 33.333 0.00 0.00 0.00 3.56
1925 2112 5.221521 TGTGGCTGTTATTTGTAAATTGCCA 60.222 36.000 15.28 15.28 44.41 4.92
1936 2123 0.671163 AAATTGCCATTGTGCGCCTG 60.671 50.000 4.18 0.00 0.00 4.85
1942 2129 2.124570 ATTGTGCGCCTGGCCTAG 60.125 61.111 14.12 0.00 42.61 3.02
1954 2141 2.596776 GGCCTAGCCTGAGAGTTCA 58.403 57.895 0.00 0.00 46.69 3.18
1955 2142 0.905357 GGCCTAGCCTGAGAGTTCAA 59.095 55.000 0.00 0.00 46.69 2.69
1956 2143 1.134551 GGCCTAGCCTGAGAGTTCAAG 60.135 57.143 0.00 0.00 46.69 3.02
1957 2144 1.134551 GCCTAGCCTGAGAGTTCAAGG 60.135 57.143 0.00 0.00 32.85 3.61
1958 2145 1.484240 CCTAGCCTGAGAGTTCAAGGG 59.516 57.143 0.00 0.00 31.69 3.95
1960 2147 1.963985 AGCCTGAGAGTTCAAGGGAT 58.036 50.000 0.00 0.00 31.69 3.85
1961 2148 1.836802 AGCCTGAGAGTTCAAGGGATC 59.163 52.381 0.00 0.00 31.69 3.36
1962 2149 1.134250 GCCTGAGAGTTCAAGGGATCC 60.134 57.143 1.92 1.92 31.69 3.36
1963 2150 2.191400 CCTGAGAGTTCAAGGGATCCA 58.809 52.381 15.23 0.00 31.69 3.41
1964 2151 2.776536 CCTGAGAGTTCAAGGGATCCAT 59.223 50.000 15.23 2.55 31.69 3.41
1965 2152 3.201708 CCTGAGAGTTCAAGGGATCCATT 59.798 47.826 15.23 10.59 31.69 3.16
1966 2153 4.324874 CCTGAGAGTTCAAGGGATCCATTT 60.325 45.833 15.23 4.38 31.69 2.32
1967 2154 4.848357 TGAGAGTTCAAGGGATCCATTTC 58.152 43.478 15.23 7.27 0.00 2.17
1968 2155 4.203226 GAGAGTTCAAGGGATCCATTTCC 58.797 47.826 15.23 2.76 34.83 3.13
1969 2156 3.854994 AGAGTTCAAGGGATCCATTTCCT 59.145 43.478 15.23 7.83 35.97 3.36
1970 2157 4.293368 AGAGTTCAAGGGATCCATTTCCTT 59.707 41.667 15.23 4.13 41.15 3.36
1971 2158 5.492524 AGAGTTCAAGGGATCCATTTCCTTA 59.507 40.000 15.23 0.00 38.70 2.69
1972 2159 6.011628 AGAGTTCAAGGGATCCATTTCCTTAA 60.012 38.462 15.23 0.00 38.70 1.85
1973 2160 6.745857 AGTTCAAGGGATCCATTTCCTTAAT 58.254 36.000 15.23 0.00 38.70 1.40
1974 2161 6.836007 AGTTCAAGGGATCCATTTCCTTAATC 59.164 38.462 15.23 1.61 38.70 1.75
1975 2162 5.376625 TCAAGGGATCCATTTCCTTAATCG 58.623 41.667 15.23 0.00 38.70 3.34
1978 2165 3.888930 GGGATCCATTTCCTTAATCGCAA 59.111 43.478 15.23 0.00 35.97 4.85
1980 2167 5.011023 GGGATCCATTTCCTTAATCGCAAAT 59.989 40.000 15.23 0.00 35.97 2.32
1983 2170 5.577835 TCCATTTCCTTAATCGCAAATTCG 58.422 37.500 0.00 0.00 0.00 3.34
1998 2185 4.259530 GCAAATTCGCAATGCACTTGATAC 60.260 41.667 5.91 0.00 39.81 2.24
2000 2187 6.257423 CAAATTCGCAATGCACTTGATACTA 58.743 36.000 5.91 0.00 36.97 1.82
2001 2188 5.663795 ATTCGCAATGCACTTGATACTAG 57.336 39.130 5.91 0.00 36.97 2.57
2002 2189 4.123497 TCGCAATGCACTTGATACTAGT 57.877 40.909 5.91 0.00 36.97 2.57
2003 2190 5.257082 TCGCAATGCACTTGATACTAGTA 57.743 39.130 4.77 4.77 36.97 1.82
2004 2191 5.842907 TCGCAATGCACTTGATACTAGTAT 58.157 37.500 15.37 15.37 36.97 2.12
2005 2192 5.920840 TCGCAATGCACTTGATACTAGTATC 59.079 40.000 28.75 28.75 41.67 2.24
2019 2206 8.039538 TGATACTAGTATCATGTACTACCTCCG 58.960 40.741 32.50 5.03 44.87 4.63
2020 2207 6.185114 ACTAGTATCATGTACTACCTCCGT 57.815 41.667 0.00 5.46 0.00 4.69
2021 2208 6.599445 ACTAGTATCATGTACTACCTCCGTT 58.401 40.000 0.00 0.00 0.00 4.44
2022 2209 6.709846 ACTAGTATCATGTACTACCTCCGTTC 59.290 42.308 0.00 0.00 0.00 3.95
2023 2210 5.692928 AGTATCATGTACTACCTCCGTTCT 58.307 41.667 6.28 0.00 0.00 3.01
2024 2211 6.835174 AGTATCATGTACTACCTCCGTTCTA 58.165 40.000 6.28 0.00 0.00 2.10
2025 2212 7.285566 AGTATCATGTACTACCTCCGTTCTAA 58.714 38.462 6.28 0.00 0.00 2.10
2026 2213 7.776969 AGTATCATGTACTACCTCCGTTCTAAA 59.223 37.037 6.28 0.00 0.00 1.85
2027 2214 6.839124 TCATGTACTACCTCCGTTCTAAAA 57.161 37.500 0.00 0.00 0.00 1.52
2028 2215 7.414222 TCATGTACTACCTCCGTTCTAAAAT 57.586 36.000 0.00 0.00 0.00 1.82
2029 2216 8.523915 TCATGTACTACCTCCGTTCTAAAATA 57.476 34.615 0.00 0.00 0.00 1.40
2030 2217 9.139734 TCATGTACTACCTCCGTTCTAAAATAT 57.860 33.333 0.00 0.00 0.00 1.28
2039 2226 9.847224 ACCTCCGTTCTAAAATATATGATGTTT 57.153 29.630 0.00 0.00 0.00 2.83
2054 2241 5.093849 TGATGTTTTGGTAGGCTAGTACC 57.906 43.478 0.00 0.00 42.68 3.34
2055 2242 3.598019 TGTTTTGGTAGGCTAGTACCG 57.402 47.619 0.00 0.00 44.98 4.02
2056 2243 3.164268 TGTTTTGGTAGGCTAGTACCGA 58.836 45.455 0.00 0.00 44.98 4.69
2057 2244 3.577848 TGTTTTGGTAGGCTAGTACCGAA 59.422 43.478 7.76 7.76 44.98 4.30
2059 2246 3.874392 TTGGTAGGCTAGTACCGAAAC 57.126 47.619 0.00 0.00 44.98 2.78
2060 2247 1.745087 TGGTAGGCTAGTACCGAAACG 59.255 52.381 0.00 0.00 44.98 3.60
2061 2248 1.745653 GGTAGGCTAGTACCGAAACGT 59.254 52.381 0.00 0.00 33.35 3.99
2062 2249 2.223363 GGTAGGCTAGTACCGAAACGTC 60.223 54.545 0.00 0.00 33.35 4.34
2063 2250 1.538047 AGGCTAGTACCGAAACGTCA 58.462 50.000 0.00 0.00 33.69 4.35
2064 2251 2.097825 AGGCTAGTACCGAAACGTCAT 58.902 47.619 0.00 0.00 33.69 3.06
2065 2252 3.282021 AGGCTAGTACCGAAACGTCATA 58.718 45.455 0.00 0.00 33.69 2.15
2066 2253 3.887716 AGGCTAGTACCGAAACGTCATAT 59.112 43.478 0.00 0.00 33.69 1.78
2067 2254 5.065914 AGGCTAGTACCGAAACGTCATATA 58.934 41.667 0.00 0.00 33.69 0.86
2068 2255 5.709164 AGGCTAGTACCGAAACGTCATATAT 59.291 40.000 0.00 0.00 33.69 0.86
2069 2256 6.208204 AGGCTAGTACCGAAACGTCATATATT 59.792 38.462 0.00 0.00 33.69 1.28
2070 2257 6.865205 GGCTAGTACCGAAACGTCATATATTT 59.135 38.462 0.00 0.00 0.00 1.40
2071 2258 7.383300 GGCTAGTACCGAAACGTCATATATTTT 59.617 37.037 0.00 0.00 0.00 1.82
2072 2259 9.398170 GCTAGTACCGAAACGTCATATATTTTA 57.602 33.333 0.00 0.00 0.00 1.52
2077 2264 7.834529 ACCGAAACGTCATATATTTTAGAACG 58.165 34.615 0.00 0.00 0.00 3.95
2078 2265 7.043192 ACCGAAACGTCATATATTTTAGAACGG 60.043 37.037 0.00 0.00 38.00 4.44
2079 2266 7.167968 CCGAAACGTCATATATTTTAGAACGGA 59.832 37.037 0.00 0.00 34.79 4.69
2080 2267 8.205948 CGAAACGTCATATATTTTAGAACGGAG 58.794 37.037 0.00 0.00 0.00 4.63
2081 2268 7.941795 AACGTCATATATTTTAGAACGGAGG 57.058 36.000 0.00 0.00 0.00 4.30
2082 2269 7.047460 ACGTCATATATTTTAGAACGGAGGT 57.953 36.000 0.00 0.00 0.00 3.85
2083 2270 7.495055 ACGTCATATATTTTAGAACGGAGGTT 58.505 34.615 0.00 0.00 39.63 3.50
2084 2271 7.983484 ACGTCATATATTTTAGAACGGAGGTTT 59.017 33.333 0.00 0.00 36.24 3.27
2085 2272 8.823818 CGTCATATATTTTAGAACGGAGGTTTT 58.176 33.333 0.00 0.00 36.24 2.43
2089 2276 5.892160 ATTTTAGAACGGAGGTTTTAGCC 57.108 39.130 0.00 0.00 36.24 3.93
2090 2277 4.628963 TTTAGAACGGAGGTTTTAGCCT 57.371 40.909 0.00 0.00 42.53 4.58
2091 2278 5.743636 TTTAGAACGGAGGTTTTAGCCTA 57.256 39.130 0.00 0.00 39.34 3.93
2092 2279 3.606595 AGAACGGAGGTTTTAGCCTAC 57.393 47.619 0.00 0.00 39.34 3.18
2093 2280 2.235650 AGAACGGAGGTTTTAGCCTACC 59.764 50.000 0.00 0.00 39.34 3.18
2094 2281 1.648116 ACGGAGGTTTTAGCCTACCA 58.352 50.000 0.00 0.00 39.34 3.25
2095 2282 1.980036 ACGGAGGTTTTAGCCTACCAA 59.020 47.619 0.00 0.00 39.34 3.67
2096 2283 2.372837 ACGGAGGTTTTAGCCTACCAAA 59.627 45.455 0.00 0.00 39.34 3.28
2097 2284 3.181441 ACGGAGGTTTTAGCCTACCAAAA 60.181 43.478 0.00 0.00 39.34 2.44
2098 2285 3.189910 CGGAGGTTTTAGCCTACCAAAAC 59.810 47.826 0.00 0.00 41.67 2.43
2099 2286 3.189910 GGAGGTTTTAGCCTACCAAAACG 59.810 47.826 0.00 0.00 42.75 3.60
2100 2287 3.817084 GAGGTTTTAGCCTACCAAAACGT 59.183 43.478 5.20 5.20 42.75 3.99
2101 2288 3.817084 AGGTTTTAGCCTACCAAAACGTC 59.183 43.478 0.00 0.00 42.75 4.34
2102 2289 3.565063 GGTTTTAGCCTACCAAAACGTCA 59.435 43.478 0.00 0.00 42.75 4.35
2103 2290 4.216902 GGTTTTAGCCTACCAAAACGTCAT 59.783 41.667 0.00 0.00 42.75 3.06
2104 2291 5.412286 GGTTTTAGCCTACCAAAACGTCATA 59.588 40.000 0.00 0.00 42.75 2.15
2105 2292 6.094464 GGTTTTAGCCTACCAAAACGTCATAT 59.906 38.462 0.00 0.00 42.75 1.78
2106 2293 7.280652 GGTTTTAGCCTACCAAAACGTCATATA 59.719 37.037 0.00 0.00 42.75 0.86
2107 2294 8.833493 GTTTTAGCCTACCAAAACGTCATATAT 58.167 33.333 0.00 0.00 35.58 0.86
2108 2295 8.967664 TTTAGCCTACCAAAACGTCATATATT 57.032 30.769 0.00 0.00 0.00 1.28
2109 2296 8.967664 TTAGCCTACCAAAACGTCATATATTT 57.032 30.769 0.00 0.00 0.00 1.40
2110 2297 7.875327 AGCCTACCAAAACGTCATATATTTT 57.125 32.000 0.00 0.00 0.00 1.82
2111 2298 8.967664 AGCCTACCAAAACGTCATATATTTTA 57.032 30.769 0.00 0.00 0.00 1.52
2112 2299 9.052759 AGCCTACCAAAACGTCATATATTTTAG 57.947 33.333 0.00 0.00 0.00 1.85
2113 2300 9.048446 GCCTACCAAAACGTCATATATTTTAGA 57.952 33.333 0.00 0.00 0.00 2.10
2117 2304 7.906527 ACCAAAACGTCATATATTTTAGAACGC 59.093 33.333 0.00 0.00 0.00 4.84
2118 2305 7.906010 CCAAAACGTCATATATTTTAGAACGCA 59.094 33.333 0.00 0.00 0.00 5.24
2119 2306 8.933955 CAAAACGTCATATATTTTAGAACGCAG 58.066 33.333 0.00 0.00 0.00 5.18
2120 2307 6.764877 ACGTCATATATTTTAGAACGCAGG 57.235 37.500 0.00 0.00 0.00 4.85
2121 2308 6.278363 ACGTCATATATTTTAGAACGCAGGT 58.722 36.000 0.00 0.00 0.00 4.00
2122 2309 7.428020 ACGTCATATATTTTAGAACGCAGGTA 58.572 34.615 0.00 0.00 0.00 3.08
2123 2310 7.594015 ACGTCATATATTTTAGAACGCAGGTAG 59.406 37.037 0.00 0.00 0.00 3.18
2124 2311 7.594015 CGTCATATATTTTAGAACGCAGGTAGT 59.406 37.037 0.00 0.00 0.00 2.73
2125 2312 9.903682 GTCATATATTTTAGAACGCAGGTAGTA 57.096 33.333 0.00 0.00 0.00 1.82
2133 2320 3.688673 AGAACGCAGGTAGTACTAGACAC 59.311 47.826 1.87 0.00 0.00 3.67
2152 2339 4.703897 ACACTGCTAACTACTTTCAGCAA 58.296 39.130 0.00 0.00 43.02 3.91
2153 2340 5.308825 ACACTGCTAACTACTTTCAGCAAT 58.691 37.500 0.00 0.00 43.02 3.56
2172 2359 8.843262 TCAGCAATTATATTCTGATGTCTTTGG 58.157 33.333 0.00 0.00 31.35 3.28
2173 2360 7.594015 CAGCAATTATATTCTGATGTCTTTGGC 59.406 37.037 0.00 0.00 0.00 4.52
2175 2362 7.470424 GCAATTATATTCTGATGTCTTTGGCCA 60.470 37.037 0.00 0.00 0.00 5.36
2176 2363 7.756395 ATTATATTCTGATGTCTTTGGCCAG 57.244 36.000 5.11 0.00 0.00 4.85
2177 2364 2.957402 TTCTGATGTCTTTGGCCAGT 57.043 45.000 5.11 0.00 0.00 4.00
2179 2366 4.365514 TTCTGATGTCTTTGGCCAGTTA 57.634 40.909 5.11 0.00 0.00 2.24
2180 2367 3.942829 TCTGATGTCTTTGGCCAGTTAG 58.057 45.455 5.11 5.35 0.00 2.34
2181 2368 3.327757 TCTGATGTCTTTGGCCAGTTAGT 59.672 43.478 5.11 0.00 0.00 2.24
2193 2380 4.830046 TGGCCAGTTAGTTTTTGCTGAATA 59.170 37.500 0.00 0.00 0.00 1.75
2195 2382 5.633601 GGCCAGTTAGTTTTTGCTGAATAAC 59.366 40.000 0.00 0.00 0.00 1.89
2196 2383 5.633601 GCCAGTTAGTTTTTGCTGAATAACC 59.366 40.000 0.00 0.00 0.00 2.85
2199 2386 7.872483 CCAGTTAGTTTTTGCTGAATAACCATT 59.128 33.333 0.00 0.00 0.00 3.16
2200 2387 8.702438 CAGTTAGTTTTTGCTGAATAACCATTG 58.298 33.333 0.00 0.00 0.00 2.82
2201 2388 8.637986 AGTTAGTTTTTGCTGAATAACCATTGA 58.362 29.630 0.00 0.00 0.00 2.57
2202 2389 9.423061 GTTAGTTTTTGCTGAATAACCATTGAT 57.577 29.630 0.00 0.00 0.00 2.57
2205 2392 9.807649 AGTTTTTGCTGAATAACCATTGATATC 57.192 29.630 0.00 0.00 0.00 1.63
2206 2393 9.807649 GTTTTTGCTGAATAACCATTGATATCT 57.192 29.630 3.98 0.00 0.00 1.98
2207 2394 9.806203 TTTTTGCTGAATAACCATTGATATCTG 57.194 29.630 3.98 0.00 0.00 2.90
2210 2397 7.744733 TGCTGAATAACCATTGATATCTGGTA 58.255 34.615 15.10 6.47 44.97 3.25
2213 2400 9.388506 CTGAATAACCATTGATATCTGGTATCC 57.611 37.037 15.10 7.52 44.97 2.59
2214 2401 9.116080 TGAATAACCATTGATATCTGGTATCCT 57.884 33.333 15.10 4.71 44.97 3.24
2215 2402 9.388506 GAATAACCATTGATATCTGGTATCCTG 57.611 37.037 15.10 3.68 44.97 3.86
2216 2403 6.770286 AACCATTGATATCTGGTATCCTGT 57.230 37.500 15.10 0.00 44.97 4.00
2217 2404 6.770286 ACCATTGATATCTGGTATCCTGTT 57.230 37.500 13.57 0.00 43.91 3.16
2218 2405 6.773638 ACCATTGATATCTGGTATCCTGTTC 58.226 40.000 13.57 0.00 43.91 3.18
2223 2426 8.964476 TTGATATCTGGTATCCTGTTCTTTTC 57.036 34.615 5.52 0.00 38.76 2.29
2229 2432 6.044404 TCTGGTATCCTGTTCTTTTCTCCTTT 59.956 38.462 0.00 0.00 0.00 3.11
2231 2434 5.106118 GGTATCCTGTTCTTTTCTCCTTTGC 60.106 44.000 0.00 0.00 0.00 3.68
2234 2437 3.885297 CCTGTTCTTTTCTCCTTTGCTGA 59.115 43.478 0.00 0.00 0.00 4.26
2239 2442 5.233083 TCTTTTCTCCTTTGCTGAGATGA 57.767 39.130 0.00 0.00 38.58 2.92
2244 2447 4.186926 TCTCCTTTGCTGAGATGATTTCG 58.813 43.478 0.00 0.00 34.03 3.46
2245 2448 3.937706 CTCCTTTGCTGAGATGATTTCGT 59.062 43.478 0.00 0.00 31.26 3.85
2246 2449 3.935203 TCCTTTGCTGAGATGATTTCGTC 59.065 43.478 0.00 0.00 0.00 4.20
2247 2450 3.937706 CCTTTGCTGAGATGATTTCGTCT 59.062 43.478 1.94 1.94 44.36 4.18
2260 2463 4.996758 TGATTTCGTCTCAAATTCTGCAGA 59.003 37.500 13.74 13.74 0.00 4.26
2272 2475 0.894835 TCTGCAGATACTTGTGGCGA 59.105 50.000 13.74 0.00 0.00 5.54
2343 2546 0.108329 ACCGCATCTACAAAGGGTCG 60.108 55.000 0.00 0.00 0.00 4.79
2362 2565 1.722751 CGCAAGAAAGCACTAACAGCG 60.723 52.381 0.00 0.00 43.02 5.18
2373 2576 3.439293 CACTAACAGCGACAGTCCATAG 58.561 50.000 0.00 0.00 0.00 2.23
2377 2580 1.032794 CAGCGACAGTCCATAGCCTA 58.967 55.000 0.00 0.00 0.00 3.93
2384 2587 4.499183 GACAGTCCATAGCCTATGTATGC 58.501 47.826 10.69 0.00 34.36 3.14
2385 2588 3.903714 ACAGTCCATAGCCTATGTATGCA 59.096 43.478 10.69 0.00 34.36 3.96
2416 2619 1.732732 CGAACATCTGTCTGTCGGGTC 60.733 57.143 0.00 0.00 0.00 4.46
2417 2620 1.272490 GAACATCTGTCTGTCGGGTCA 59.728 52.381 0.00 0.00 0.00 4.02
2419 2622 1.273606 ACATCTGTCTGTCGGGTCAAG 59.726 52.381 0.00 0.00 0.00 3.02
2457 2660 5.740290 TCCTTGTTACTAAGAGGTGGAAG 57.260 43.478 0.00 0.00 0.00 3.46
2472 2675 3.206150 GTGGAAGCTTCTTGACTGACAA 58.794 45.455 25.05 0.00 36.97 3.18
2474 2677 3.627577 TGGAAGCTTCTTGACTGACAAAC 59.372 43.478 25.05 5.12 38.08 2.93
2520 2724 9.783256 AATACCGTTCTTAATTTGTAATTCTGC 57.217 29.630 0.00 0.00 0.00 4.26
2521 2727 7.448748 ACCGTTCTTAATTTGTAATTCTGCT 57.551 32.000 0.00 0.00 0.00 4.24
2522 2728 7.305474 ACCGTTCTTAATTTGTAATTCTGCTG 58.695 34.615 0.00 0.00 0.00 4.41
2524 2730 7.023575 CGTTCTTAATTTGTAATTCTGCTGCT 58.976 34.615 0.00 0.00 0.00 4.24
2535 2741 0.897621 TCTGCTGCTCCTGATTCGAA 59.102 50.000 0.00 0.00 0.00 3.71
2537 2743 1.396301 CTGCTGCTCCTGATTCGAAAC 59.604 52.381 0.00 0.00 0.00 2.78
2538 2744 0.729690 GCTGCTCCTGATTCGAAACC 59.270 55.000 0.00 0.00 0.00 3.27
2539 2745 1.373570 CTGCTCCTGATTCGAAACCC 58.626 55.000 0.00 0.00 0.00 4.11
2540 2746 0.035439 TGCTCCTGATTCGAAACCCC 60.035 55.000 0.00 0.00 0.00 4.95
2541 2747 0.748367 GCTCCTGATTCGAAACCCCC 60.748 60.000 0.00 0.00 0.00 5.40
2560 2766 1.928503 CCGCAAATGATGGATGCAAAC 59.071 47.619 0.00 0.00 40.04 2.93
2570 2776 2.422597 TGGATGCAAACAAGGTAGACG 58.577 47.619 0.00 0.00 0.00 4.18
2578 2784 4.773510 CAAACAAGGTAGACGAAGAAAGC 58.226 43.478 0.00 0.00 0.00 3.51
2584 2790 3.374678 AGGTAGACGAAGAAAGCTACTCG 59.625 47.826 0.00 0.00 34.95 4.18
2589 2795 1.799548 CGAAGAAAGCTACTCGGAGGC 60.800 57.143 10.23 4.05 0.00 4.70
2592 2798 0.248702 GAAAGCTACTCGGAGGCTCG 60.249 60.000 8.69 4.22 35.06 5.03
2602 2808 1.134220 TCGGAGGCTCGCCATAAAAAT 60.134 47.619 11.02 0.00 38.92 1.82
2609 2815 4.278419 AGGCTCGCCATAAAAATGATTACC 59.722 41.667 11.02 0.00 38.92 2.85
2615 2821 5.519722 GCCATAAAAATGATTACCGACAGG 58.480 41.667 0.00 0.00 45.13 4.00
2616 2822 5.519722 CCATAAAAATGATTACCGACAGGC 58.480 41.667 0.00 0.00 42.76 4.85
2617 2823 5.299279 CCATAAAAATGATTACCGACAGGCT 59.701 40.000 0.00 0.00 42.76 4.58
2620 2826 2.898729 ATGATTACCGACAGGCTGAG 57.101 50.000 23.66 14.26 42.76 3.35
2630 2836 3.306088 CCGACAGGCTGAGAGAAACTTAA 60.306 47.826 23.66 0.00 0.00 1.85
2635 2841 7.208225 ACAGGCTGAGAGAAACTTAATTTTC 57.792 36.000 23.66 9.62 35.97 2.29
2636 2842 6.207614 ACAGGCTGAGAGAAACTTAATTTTCC 59.792 38.462 23.66 6.65 36.31 3.13
2637 2843 6.207417 CAGGCTGAGAGAAACTTAATTTTCCA 59.793 38.462 9.42 5.50 36.31 3.53
2638 2844 6.950619 AGGCTGAGAGAAACTTAATTTTCCAT 59.049 34.615 13.06 4.22 36.31 3.41
2639 2845 7.121907 AGGCTGAGAGAAACTTAATTTTCCATC 59.878 37.037 13.06 11.79 36.31 3.51
2641 2847 8.518702 GCTGAGAGAAACTTAATTTTCCATCTT 58.481 33.333 13.06 0.00 36.31 2.40
2643 2849 9.799106 TGAGAGAAACTTAATTTTCCATCTTCT 57.201 29.630 13.06 9.61 36.31 2.85
2720 2926 6.990939 GTGTAAGAAGAAACTTACCAAGTCCT 59.009 38.462 13.52 0.00 46.51 3.85
2722 2928 6.944234 AAGAAGAAACTTACCAAGTCCTTG 57.056 37.500 9.79 0.00 41.91 3.61
2723 2929 4.822350 AGAAGAAACTTACCAAGTCCTTGC 59.178 41.667 1.40 0.00 41.91 4.01
2733 3023 3.642848 ACCAAGTCCTTGCATTTGAATGT 59.357 39.130 1.40 0.00 39.16 2.71
2757 3047 0.806868 CAAGCGTGCCATGTCTGATT 59.193 50.000 0.00 0.00 0.00 2.57
2762 3052 1.931841 CGTGCCATGTCTGATTCTGAG 59.068 52.381 0.00 0.00 0.00 3.35
2769 3059 4.251268 CATGTCTGATTCTGAGCACTGAA 58.749 43.478 5.97 5.97 38.09 3.02
2770 3060 4.548451 TGTCTGATTCTGAGCACTGAAT 57.452 40.909 14.39 14.39 43.69 2.57
2771 3061 4.251268 TGTCTGATTCTGAGCACTGAATG 58.749 43.478 18.27 7.58 42.04 2.67
2799 3100 7.665690 ACTAGTAGCAGATTATCATTCACCTG 58.334 38.462 0.00 0.00 0.00 4.00
2800 3101 5.303971 AGTAGCAGATTATCATTCACCTGC 58.696 41.667 0.00 0.00 45.09 4.85
2809 3110 2.279741 TCATTCACCTGCGCATACTTC 58.720 47.619 12.24 0.00 0.00 3.01
2820 3122 3.065233 TGCGCATACTTCATCCATTGTTC 59.935 43.478 5.66 0.00 0.00 3.18
2822 3124 4.438608 GCGCATACTTCATCCATTGTTCAA 60.439 41.667 0.30 0.00 0.00 2.69
2823 3125 5.268544 CGCATACTTCATCCATTGTTCAAG 58.731 41.667 0.00 0.00 0.00 3.02
2825 3127 5.450965 GCATACTTCATCCATTGTTCAAGGG 60.451 44.000 9.57 9.57 0.00 3.95
2826 3128 4.387026 ACTTCATCCATTGTTCAAGGGA 57.613 40.909 18.74 18.74 37.01 4.20
2828 3130 4.952335 ACTTCATCCATTGTTCAAGGGATC 59.048 41.667 23.08 0.00 40.98 3.36
2829 3131 4.589647 TCATCCATTGTTCAAGGGATCA 57.410 40.909 23.08 12.53 40.98 2.92
2838 3140 6.885952 TTGTTCAAGGGATCAAATCGTTTA 57.114 33.333 0.00 0.00 31.53 2.01
2857 3159 5.563842 GTTTAGATGTGAAATTCCTGCGAG 58.436 41.667 0.00 0.00 0.00 5.03
2876 3178 3.753787 CCAAAGAGGCCCTCAAAGT 57.246 52.632 14.46 0.00 32.06 2.66
2877 3179 1.251251 CCAAAGAGGCCCTCAAAGTG 58.749 55.000 14.46 4.86 32.06 3.16
2881 3183 0.034670 AGAGGCCCTCAAAGTGCATC 60.035 55.000 14.46 0.00 36.15 3.91
2890 3200 1.301716 AAAGTGCATCGCTCGGTGT 60.302 52.632 4.39 0.00 0.00 4.16
2897 3207 0.028902 CATCGCTCGGTGTGACGATA 59.971 55.000 0.00 0.00 42.62 2.92
2923 3234 7.102346 CCCTCCTCATGATGCTAATTTAGTAG 58.898 42.308 0.00 0.00 0.00 2.57
2925 3236 8.034215 CCTCCTCATGATGCTAATTTAGTAGAG 58.966 40.741 0.00 4.10 0.00 2.43
2926 3237 7.901029 TCCTCATGATGCTAATTTAGTAGAGG 58.099 38.462 15.52 15.52 39.19 3.69
2927 3238 7.730332 TCCTCATGATGCTAATTTAGTAGAGGA 59.270 37.037 18.23 18.23 43.05 3.71
2928 3239 8.370940 CCTCATGATGCTAATTTAGTAGAGGAA 58.629 37.037 16.17 0.00 40.00 3.36
2929 3240 9.941325 CTCATGATGCTAATTTAGTAGAGGAAT 57.059 33.333 0.00 0.00 0.00 3.01
2939 3250 7.956328 ATTTAGTAGAGGAATTTTTGACCCC 57.044 36.000 0.00 0.00 0.00 4.95
2941 3252 4.923415 AGTAGAGGAATTTTTGACCCCAG 58.077 43.478 0.00 0.00 0.00 4.45
2942 3253 4.601857 AGTAGAGGAATTTTTGACCCCAGA 59.398 41.667 0.00 0.00 0.00 3.86
2943 3254 4.682021 AGAGGAATTTTTGACCCCAGAT 57.318 40.909 0.00 0.00 0.00 2.90
2945 3256 4.044571 AGAGGAATTTTTGACCCCAGATCA 59.955 41.667 0.00 0.00 0.00 2.92
2946 3257 4.089361 AGGAATTTTTGACCCCAGATCAC 58.911 43.478 0.00 0.00 0.00 3.06
2947 3258 3.831911 GGAATTTTTGACCCCAGATCACA 59.168 43.478 0.00 0.00 0.00 3.58
2948 3259 4.467438 GGAATTTTTGACCCCAGATCACAT 59.533 41.667 0.00 0.00 0.00 3.21
2950 3261 5.665916 ATTTTTGACCCCAGATCACATTC 57.334 39.130 0.00 0.00 0.00 2.67
2951 3262 2.806945 TTGACCCCAGATCACATTCC 57.193 50.000 0.00 0.00 0.00 3.01
2952 3263 0.918983 TGACCCCAGATCACATTCCC 59.081 55.000 0.00 0.00 0.00 3.97
2953 3264 1.216990 GACCCCAGATCACATTCCCT 58.783 55.000 0.00 0.00 0.00 4.20
2954 3265 0.921896 ACCCCAGATCACATTCCCTG 59.078 55.000 0.00 0.00 0.00 4.45
2955 3266 0.184451 CCCCAGATCACATTCCCTGG 59.816 60.000 0.00 0.00 44.29 4.45
2956 3267 0.921896 CCCAGATCACATTCCCTGGT 59.078 55.000 0.00 0.00 43.43 4.00
2957 3268 2.126882 CCCAGATCACATTCCCTGGTA 58.873 52.381 0.00 0.00 43.43 3.25
2958 3269 2.158755 CCCAGATCACATTCCCTGGTAC 60.159 54.545 0.00 0.00 43.43 3.34
2959 3270 2.774234 CCAGATCACATTCCCTGGTACT 59.226 50.000 0.00 0.00 40.84 2.73
2960 3271 3.181461 CCAGATCACATTCCCTGGTACTC 60.181 52.174 0.00 0.00 40.84 2.59
2986 3297 0.588730 CTTGGTTCGTGCGTGTGTTG 60.589 55.000 0.00 0.00 0.00 3.33
2997 3308 1.135603 GCGTGTGTTGATGATGCACAT 60.136 47.619 0.00 0.00 43.67 3.21
2998 3309 2.511879 CGTGTGTTGATGATGCACATG 58.488 47.619 6.52 0.00 43.67 3.21
3012 3323 4.340019 CATGTGCGCGGTGCCAAA 62.340 61.111 8.83 0.00 45.60 3.28
3013 3324 4.341502 ATGTGCGCGGTGCCAAAC 62.342 61.111 8.83 3.29 45.60 2.93
3015 3326 4.341502 GTGCGCGGTGCCAAACAT 62.342 61.111 8.83 0.00 45.60 2.71
3016 3327 2.669910 TGCGCGGTGCCAAACATA 60.670 55.556 8.83 0.00 45.60 2.29
3017 3328 2.043405 TGCGCGGTGCCAAACATAT 61.043 52.632 8.83 0.00 45.60 1.78
3018 3329 1.138671 GCGCGGTGCCAAACATATT 59.861 52.632 8.83 0.00 37.76 1.28
3019 3330 1.139226 GCGCGGTGCCAAACATATTG 61.139 55.000 8.83 0.00 37.76 1.90
3020 3331 0.449786 CGCGGTGCCAAACATATTGA 59.550 50.000 0.00 0.00 0.00 2.57
3021 3332 1.135546 CGCGGTGCCAAACATATTGAA 60.136 47.619 0.00 0.00 0.00 2.69
3022 3333 2.669670 CGCGGTGCCAAACATATTGAAA 60.670 45.455 0.00 0.00 0.00 2.69
3023 3334 2.666022 GCGGTGCCAAACATATTGAAAC 59.334 45.455 0.00 0.00 0.00 2.78
3024 3335 2.914214 CGGTGCCAAACATATTGAAACG 59.086 45.455 0.00 0.00 0.00 3.60
3025 3336 2.666022 GGTGCCAAACATATTGAAACGC 59.334 45.455 0.00 0.00 0.00 4.84
3026 3337 3.574614 GTGCCAAACATATTGAAACGCT 58.425 40.909 0.00 0.00 0.00 5.07
3027 3338 3.364621 GTGCCAAACATATTGAAACGCTG 59.635 43.478 0.00 0.00 0.00 5.18
3028 3339 2.345341 GCCAAACATATTGAAACGCTGC 59.655 45.455 0.00 0.00 0.00 5.25
3029 3340 3.573598 CCAAACATATTGAAACGCTGCA 58.426 40.909 0.00 0.00 0.00 4.41
3030 3341 3.364621 CCAAACATATTGAAACGCTGCAC 59.635 43.478 0.00 0.00 0.00 4.57
3031 3342 2.919666 ACATATTGAAACGCTGCACC 57.080 45.000 0.00 0.00 0.00 5.01
3032 3343 1.472480 ACATATTGAAACGCTGCACCC 59.528 47.619 0.00 0.00 0.00 4.61
3056 3367 0.250858 CCAGGACAGGTTCATGCACA 60.251 55.000 0.00 0.00 34.49 4.57
3059 3370 0.890542 GGACAGGTTCATGCACAGCA 60.891 55.000 0.00 0.00 44.86 4.41
3062 3373 1.303888 AGGTTCATGCACAGCAGGG 60.304 57.895 3.73 0.00 43.65 4.45
3070 3381 0.622136 TGCACAGCAGGGAATGATCT 59.378 50.000 0.00 0.00 33.32 2.75
3072 3383 1.964552 CACAGCAGGGAATGATCTCC 58.035 55.000 0.00 0.00 34.41 3.71
3081 3392 1.408822 GGAATGATCTCCGGTGCCTTT 60.409 52.381 0.00 0.00 0.00 3.11
3107 3425 4.593864 GCGGGGAGGTCGAGCATC 62.594 72.222 18.15 10.97 0.00 3.91
3209 3527 2.203625 GGTGGGGGCAGCTTCAAA 60.204 61.111 0.00 0.00 0.00 2.69
3257 3575 2.042686 TACAGAGCCAACATCCATGC 57.957 50.000 0.00 0.00 0.00 4.06
3258 3576 0.682209 ACAGAGCCAACATCCATGCC 60.682 55.000 0.00 0.00 0.00 4.40
3259 3577 0.395311 CAGAGCCAACATCCATGCCT 60.395 55.000 0.00 0.00 0.00 4.75
3260 3578 0.395311 AGAGCCAACATCCATGCCTG 60.395 55.000 0.00 0.00 0.00 4.85
3261 3579 2.012902 GAGCCAACATCCATGCCTGC 62.013 60.000 0.00 0.00 0.00 4.85
3262 3580 2.352821 GCCAACATCCATGCCTGCA 61.353 57.895 0.00 0.00 0.00 4.41
3263 3581 1.682451 GCCAACATCCATGCCTGCAT 61.682 55.000 0.00 0.00 37.08 3.96
3272 3590 2.442212 CATGCCTGCATGTGTTTTCA 57.558 45.000 21.12 0.00 46.20 2.69
3273 3591 2.967362 CATGCCTGCATGTGTTTTCAT 58.033 42.857 21.12 0.00 46.20 2.57
3274 3592 2.728690 TGCCTGCATGTGTTTTCATC 57.271 45.000 0.00 0.00 0.00 2.92
3275 3593 1.273048 TGCCTGCATGTGTTTTCATCC 59.727 47.619 0.00 0.00 0.00 3.51
3276 3594 1.404583 GCCTGCATGTGTTTTCATCCC 60.405 52.381 0.00 0.00 0.00 3.85
3277 3595 1.135315 CCTGCATGTGTTTTCATCCCG 60.135 52.381 0.00 0.00 0.00 5.14
3278 3596 0.243365 TGCATGTGTTTTCATCCCGC 59.757 50.000 0.00 0.00 0.00 6.13
3279 3597 0.458370 GCATGTGTTTTCATCCCGCC 60.458 55.000 0.00 0.00 0.00 6.13
3280 3598 0.173255 CATGTGTTTTCATCCCGCCC 59.827 55.000 0.00 0.00 0.00 6.13
3281 3599 0.039618 ATGTGTTTTCATCCCGCCCT 59.960 50.000 0.00 0.00 0.00 5.19
3282 3600 0.893270 TGTGTTTTCATCCCGCCCTG 60.893 55.000 0.00 0.00 0.00 4.45
3283 3601 1.976474 TGTTTTCATCCCGCCCTGC 60.976 57.895 0.00 0.00 0.00 4.85
3284 3602 1.678970 GTTTTCATCCCGCCCTGCT 60.679 57.895 0.00 0.00 0.00 4.24
3285 3603 1.678635 TTTTCATCCCGCCCTGCTG 60.679 57.895 0.00 0.00 0.00 4.41
3286 3604 3.643595 TTTCATCCCGCCCTGCTGG 62.644 63.158 1.89 1.89 34.20 4.85
3288 3606 4.559063 CATCCCGCCCTGCTGGAG 62.559 72.222 11.88 4.70 44.48 3.86
3289 3607 4.804420 ATCCCGCCCTGCTGGAGA 62.804 66.667 11.88 2.85 44.48 3.71
3294 3612 3.806667 GCCCTGCTGGAGAGCCAT 61.807 66.667 11.88 0.00 45.57 4.40
3295 3613 2.509916 CCCTGCTGGAGAGCCATC 59.490 66.667 11.88 0.00 45.57 3.51
3296 3614 2.071262 CCCTGCTGGAGAGCCATCT 61.071 63.158 11.88 0.00 45.57 2.90
3308 3626 4.564782 AGAGCCATCTCAACAATCTCAA 57.435 40.909 0.00 0.00 41.81 3.02
3309 3627 4.914983 AGAGCCATCTCAACAATCTCAAA 58.085 39.130 0.00 0.00 41.81 2.69
3310 3628 4.699257 AGAGCCATCTCAACAATCTCAAAC 59.301 41.667 0.00 0.00 41.81 2.93
3311 3629 4.401022 AGCCATCTCAACAATCTCAAACA 58.599 39.130 0.00 0.00 0.00 2.83
3312 3630 4.458295 AGCCATCTCAACAATCTCAAACAG 59.542 41.667 0.00 0.00 0.00 3.16
3313 3631 4.217118 GCCATCTCAACAATCTCAAACAGT 59.783 41.667 0.00 0.00 0.00 3.55
3314 3632 5.618640 GCCATCTCAACAATCTCAAACAGTC 60.619 44.000 0.00 0.00 0.00 3.51
3315 3633 5.106396 CCATCTCAACAATCTCAAACAGTCC 60.106 44.000 0.00 0.00 0.00 3.85
3316 3634 4.389374 TCTCAACAATCTCAAACAGTCCC 58.611 43.478 0.00 0.00 0.00 4.46
3317 3635 4.136796 CTCAACAATCTCAAACAGTCCCA 58.863 43.478 0.00 0.00 0.00 4.37
3318 3636 4.136796 TCAACAATCTCAAACAGTCCCAG 58.863 43.478 0.00 0.00 0.00 4.45
3319 3637 4.136796 CAACAATCTCAAACAGTCCCAGA 58.863 43.478 0.00 0.00 0.00 3.86
3320 3638 4.437682 ACAATCTCAAACAGTCCCAGAA 57.562 40.909 0.00 0.00 0.00 3.02
3321 3639 4.792068 ACAATCTCAAACAGTCCCAGAAA 58.208 39.130 0.00 0.00 0.00 2.52
3322 3640 5.200483 ACAATCTCAAACAGTCCCAGAAAA 58.800 37.500 0.00 0.00 0.00 2.29
3323 3641 5.656416 ACAATCTCAAACAGTCCCAGAAAAA 59.344 36.000 0.00 0.00 0.00 1.94
3348 3666 8.803397 AAGGAAAACCTCTTATACAACATACC 57.197 34.615 0.00 0.00 0.00 2.73
3349 3667 7.344134 AGGAAAACCTCTTATACAACATACCC 58.656 38.462 0.00 0.00 0.00 3.69
3350 3668 6.544931 GGAAAACCTCTTATACAACATACCCC 59.455 42.308 0.00 0.00 0.00 4.95
3351 3669 5.641789 AACCTCTTATACAACATACCCCC 57.358 43.478 0.00 0.00 0.00 5.40
3352 3670 4.904373 ACCTCTTATACAACATACCCCCT 58.096 43.478 0.00 0.00 0.00 4.79
3353 3671 4.906060 ACCTCTTATACAACATACCCCCTC 59.094 45.833 0.00 0.00 0.00 4.30
3354 3672 4.286291 CCTCTTATACAACATACCCCCTCC 59.714 50.000 0.00 0.00 0.00 4.30
3355 3673 3.899360 TCTTATACAACATACCCCCTCCG 59.101 47.826 0.00 0.00 0.00 4.63
3356 3674 2.185663 ATACAACATACCCCCTCCGT 57.814 50.000 0.00 0.00 0.00 4.69
3357 3675 1.955451 TACAACATACCCCCTCCGTT 58.045 50.000 0.00 0.00 0.00 4.44
3358 3676 1.069775 ACAACATACCCCCTCCGTTT 58.930 50.000 0.00 0.00 0.00 3.60
3359 3677 1.003928 ACAACATACCCCCTCCGTTTC 59.996 52.381 0.00 0.00 0.00 2.78
3360 3678 1.003812 CAACATACCCCCTCCGTTTCA 59.996 52.381 0.00 0.00 0.00 2.69
3361 3679 1.364269 ACATACCCCCTCCGTTTCAA 58.636 50.000 0.00 0.00 0.00 2.69
3362 3680 1.706305 ACATACCCCCTCCGTTTCAAA 59.294 47.619 0.00 0.00 0.00 2.69
3363 3681 2.108601 ACATACCCCCTCCGTTTCAAAA 59.891 45.455 0.00 0.00 0.00 2.44
3364 3682 3.245479 ACATACCCCCTCCGTTTCAAAAT 60.245 43.478 0.00 0.00 0.00 1.82
3365 3683 4.018233 ACATACCCCCTCCGTTTCAAAATA 60.018 41.667 0.00 0.00 0.00 1.40
3366 3684 3.081710 ACCCCCTCCGTTTCAAAATAG 57.918 47.619 0.00 0.00 0.00 1.73
3367 3685 2.645797 ACCCCCTCCGTTTCAAAATAGA 59.354 45.455 0.00 0.00 0.00 1.98
3368 3686 3.268595 ACCCCCTCCGTTTCAAAATAGAT 59.731 43.478 0.00 0.00 0.00 1.98
3369 3687 3.632145 CCCCCTCCGTTTCAAAATAGATG 59.368 47.826 0.00 0.00 0.00 2.90
3370 3688 4.523083 CCCCTCCGTTTCAAAATAGATGA 58.477 43.478 0.00 0.00 0.00 2.92
3371 3689 4.335594 CCCCTCCGTTTCAAAATAGATGAC 59.664 45.833 0.00 0.00 0.00 3.06
3372 3690 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
3373 3691 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.679837 ACAGTTCATGCTTAATGCGGAG 59.320 45.455 0.00 0.00 46.63 4.63
32 33 8.586570 ACATTTGAAAGCGAATAATCAAAACA 57.413 26.923 4.17 0.00 42.89 2.83
73 74 3.574396 ACGCCATAGCTGCTCTTTAGATA 59.426 43.478 4.91 0.00 36.60 1.98
109 110 2.112380 TACTCCGTGATACCGTGACA 57.888 50.000 0.00 0.00 0.00 3.58
144 145 6.308282 CACCTCGAAACACATCTAACTCTAAC 59.692 42.308 0.00 0.00 0.00 2.34
154 155 1.523758 AAGCCACCTCGAAACACATC 58.476 50.000 0.00 0.00 0.00 3.06
310 311 2.036475 AGCACAACCTACACACAGAGAG 59.964 50.000 0.00 0.00 0.00 3.20
311 312 2.039418 AGCACAACCTACACACAGAGA 58.961 47.619 0.00 0.00 0.00 3.10
416 417 3.914966 CGCTGACAAGTATATCATCCGTC 59.085 47.826 0.00 0.00 0.00 4.79
446 447 1.570813 CGATTTAGTCAGCGCCATCA 58.429 50.000 2.29 0.00 0.00 3.07
459 460 1.807742 CGGGTTGTTCTTGGCGATTTA 59.192 47.619 0.00 0.00 0.00 1.40
509 510 1.442987 GCACCCTGGCCATTTATGC 59.557 57.895 5.51 10.90 0.00 3.14
570 578 5.893897 ATGATCAAAGGAAAAGAGAGTGC 57.106 39.130 0.00 0.00 0.00 4.40
591 599 4.104383 ACACAGACATCTTTCCACCAAT 57.896 40.909 0.00 0.00 0.00 3.16
639 649 2.427453 GTCAGAATCAACTAGGGAGCGA 59.573 50.000 0.00 0.00 0.00 4.93
641 651 3.449018 TCTGTCAGAATCAACTAGGGAGC 59.551 47.826 0.00 0.00 0.00 4.70
703 713 3.498018 TGCAAACGGATTATCATCATCGG 59.502 43.478 0.00 0.00 0.00 4.18
704 714 4.730600 TGCAAACGGATTATCATCATCG 57.269 40.909 0.00 0.00 0.00 3.84
729 744 7.721399 AGGGGATATTATCATCTTTGTCACAAC 59.279 37.037 6.04 0.00 0.00 3.32
740 755 4.437239 CAGCACGAGGGGATATTATCATC 58.563 47.826 6.04 0.66 0.00 2.92
753 768 2.528743 CCGCATAAGCAGCACGAGG 61.529 63.158 0.00 0.00 42.27 4.63
770 785 8.965986 ACTCGATTAAGAAAATAAAAACAGCC 57.034 30.769 0.00 0.00 0.00 4.85
827 845 2.838386 TGTACGCCGAGACTGTTATC 57.162 50.000 0.00 0.00 0.00 1.75
828 846 2.950309 AGATGTACGCCGAGACTGTTAT 59.050 45.455 0.00 0.00 0.00 1.89
829 847 2.353889 GAGATGTACGCCGAGACTGTTA 59.646 50.000 0.00 0.00 0.00 2.41
830 848 1.132643 GAGATGTACGCCGAGACTGTT 59.867 52.381 0.00 0.00 0.00 3.16
831 849 0.733729 GAGATGTACGCCGAGACTGT 59.266 55.000 0.00 0.00 0.00 3.55
841 859 4.082274 TGCAAGCAAAATGAGATGTACG 57.918 40.909 0.00 0.00 0.00 3.67
950 996 3.172050 CGTTCACAGAACTCGTGATAGG 58.828 50.000 8.11 0.00 42.69 2.57
1238 1293 2.168521 GTGGCAGAGGAAGCATGTACTA 59.831 50.000 0.00 0.00 0.00 1.82
1239 1294 1.065854 GTGGCAGAGGAAGCATGTACT 60.066 52.381 0.00 0.00 0.00 2.73
1240 1295 1.339055 TGTGGCAGAGGAAGCATGTAC 60.339 52.381 0.00 0.00 0.00 2.90
1363 1418 0.252789 TCCCCGTAATCCCAGACCAA 60.253 55.000 0.00 0.00 0.00 3.67
1422 1477 4.688021 TCAAAAAGTTTGCGCTTACCATT 58.312 34.783 9.73 2.40 0.00 3.16
1431 1486 7.329582 CAAAACTCTGTATCAAAAAGTTTGCG 58.670 34.615 0.00 0.00 39.43 4.85
1465 1520 7.254863 CCACAACAAAATTCTTCAGAAAATGGG 60.255 37.037 0.00 0.00 37.61 4.00
1513 1568 4.322567 TGCAGCATTTCACACATACTACA 58.677 39.130 0.00 0.00 0.00 2.74
1514 1569 4.944962 TGCAGCATTTCACACATACTAC 57.055 40.909 0.00 0.00 0.00 2.73
1553 1608 5.587844 CGAACCAAATCATCTTCCAGAATCT 59.412 40.000 0.00 0.00 0.00 2.40
1599 1654 8.746922 AAGAAACACGTATGATTAGTTTACGA 57.253 30.769 8.51 0.00 40.77 3.43
1610 1665 3.585862 GCTCCTGAAGAAACACGTATGA 58.414 45.455 0.00 0.00 0.00 2.15
1615 1670 0.035458 AGGGCTCCTGAAGAAACACG 59.965 55.000 0.00 0.00 29.57 4.49
1629 1684 2.619074 GCACACTTCAATAAGGAGGGCT 60.619 50.000 0.00 0.00 37.91 5.19
1630 1685 1.745653 GCACACTTCAATAAGGAGGGC 59.254 52.381 0.00 0.00 37.01 5.19
1680 1735 5.104374 ACTGTCATCAACAAAACTTTGCTG 58.896 37.500 2.07 1.04 41.79 4.41
1724 1779 2.224018 TGGGCAGAAATGCAAACTTGTC 60.224 45.455 2.29 0.00 36.33 3.18
1856 2023 0.618458 ATTGGTTAGCAGCGAAGGGA 59.382 50.000 0.00 0.00 0.00 4.20
1862 2029 4.934001 AGATGATGATATTGGTTAGCAGCG 59.066 41.667 0.00 0.00 35.40 5.18
1867 2034 6.820656 GGCAGGTAGATGATGATATTGGTTAG 59.179 42.308 0.00 0.00 0.00 2.34
1869 2036 5.515534 GGGCAGGTAGATGATGATATTGGTT 60.516 44.000 0.00 0.00 0.00 3.67
1870 2037 4.018960 GGGCAGGTAGATGATGATATTGGT 60.019 45.833 0.00 0.00 0.00 3.67
1872 2039 4.019051 TGGGGCAGGTAGATGATGATATTG 60.019 45.833 0.00 0.00 0.00 1.90
1877 2058 1.770658 CTTGGGGCAGGTAGATGATGA 59.229 52.381 0.00 0.00 0.00 2.92
1878 2059 1.492176 ACTTGGGGCAGGTAGATGATG 59.508 52.381 0.00 0.00 0.00 3.07
1894 2075 7.763172 TTACAAATAACAGCCACAAAACTTG 57.237 32.000 0.00 0.00 0.00 3.16
1896 2077 8.825745 CAATTTACAAATAACAGCCACAAAACT 58.174 29.630 0.00 0.00 0.00 2.66
1897 2078 7.585936 GCAATTTACAAATAACAGCCACAAAAC 59.414 33.333 0.00 0.00 0.00 2.43
1910 2094 4.328440 GCGCACAATGGCAATTTACAAATA 59.672 37.500 0.30 0.00 0.00 1.40
1911 2095 3.124976 GCGCACAATGGCAATTTACAAAT 59.875 39.130 0.30 0.00 0.00 2.32
1917 2104 0.671163 CAGGCGCACAATGGCAATTT 60.671 50.000 10.83 0.00 0.00 1.82
1920 2107 3.682885 CCAGGCGCACAATGGCAA 61.683 61.111 10.83 0.00 0.00 4.52
1923 2110 3.993614 TAGGCCAGGCGCACAATGG 62.994 63.158 10.83 12.75 40.31 3.16
1925 2112 2.124570 CTAGGCCAGGCGCACAAT 60.125 61.111 10.83 0.00 40.31 2.71
1938 2125 1.484240 CCCTTGAACTCTCAGGCTAGG 59.516 57.143 0.00 0.00 31.69 3.02
1942 2129 1.134250 GGATCCCTTGAACTCTCAGGC 60.134 57.143 0.00 0.00 31.69 4.85
1948 2135 4.242336 AGGAAATGGATCCCTTGAACTC 57.758 45.455 9.90 0.00 40.59 3.01
1949 2136 4.682021 AAGGAAATGGATCCCTTGAACT 57.318 40.909 9.90 2.56 40.59 3.01
1950 2137 6.238759 CGATTAAGGAAATGGATCCCTTGAAC 60.239 42.308 9.90 0.01 40.26 3.18
1953 2140 4.022849 GCGATTAAGGAAATGGATCCCTTG 60.023 45.833 9.90 0.00 40.26 3.61
1954 2141 4.145052 GCGATTAAGGAAATGGATCCCTT 58.855 43.478 9.90 7.35 40.59 3.95
1955 2142 3.138283 TGCGATTAAGGAAATGGATCCCT 59.862 43.478 9.90 0.00 40.59 4.20
1956 2143 3.486383 TGCGATTAAGGAAATGGATCCC 58.514 45.455 9.90 0.00 40.59 3.85
1957 2144 5.514274 TTTGCGATTAAGGAAATGGATCC 57.486 39.130 4.20 4.20 39.96 3.36
1958 2145 6.360681 CGAATTTGCGATTAAGGAAATGGATC 59.639 38.462 0.00 0.00 40.45 3.36
1960 2147 5.577835 CGAATTTGCGATTAAGGAAATGGA 58.422 37.500 0.00 0.00 40.45 3.41
1961 2148 4.207019 GCGAATTTGCGATTAAGGAAATGG 59.793 41.667 0.90 0.00 40.45 3.16
1962 2149 4.797868 TGCGAATTTGCGATTAAGGAAATG 59.202 37.500 13.01 0.00 40.45 2.32
1963 2150 4.992688 TGCGAATTTGCGATTAAGGAAAT 58.007 34.783 13.01 0.00 42.57 2.17
1964 2151 4.427096 TGCGAATTTGCGATTAAGGAAA 57.573 36.364 13.01 0.00 37.81 3.13
1965 2152 4.427096 TTGCGAATTTGCGATTAAGGAA 57.573 36.364 13.01 0.00 37.81 3.36
1966 2153 4.350346 CATTGCGAATTTGCGATTAAGGA 58.650 39.130 16.64 0.00 36.84 3.36
1967 2154 3.061006 GCATTGCGAATTTGCGATTAAGG 60.061 43.478 16.64 7.88 36.84 2.69
1968 2155 3.547068 TGCATTGCGAATTTGCGATTAAG 59.453 39.130 16.64 8.19 36.84 1.85
1969 2156 3.302964 GTGCATTGCGAATTTGCGATTAA 59.697 39.130 16.64 6.45 36.84 1.40
1970 2157 2.851235 GTGCATTGCGAATTTGCGATTA 59.149 40.909 16.64 7.43 36.84 1.75
1971 2158 1.655099 GTGCATTGCGAATTTGCGATT 59.345 42.857 16.64 0.00 36.84 3.34
1972 2159 1.135315 AGTGCATTGCGAATTTGCGAT 60.135 42.857 13.91 13.91 39.60 4.58
1973 2160 0.240678 AGTGCATTGCGAATTTGCGA 59.759 45.000 10.15 10.15 39.23 5.10
1974 2161 1.062258 AAGTGCATTGCGAATTTGCG 58.938 45.000 13.01 0.13 39.23 4.85
1975 2162 2.060284 TCAAGTGCATTGCGAATTTGC 58.940 42.857 10.99 10.99 38.89 3.68
1978 2165 4.970662 AGTATCAAGTGCATTGCGAATT 57.029 36.364 3.84 0.00 38.89 2.17
1980 2167 4.503910 ACTAGTATCAAGTGCATTGCGAA 58.496 39.130 3.84 0.00 38.89 4.70
1998 2185 6.935771 AGAACGGAGGTAGTACATGATACTAG 59.064 42.308 0.00 0.00 31.41 2.57
2000 2187 5.692928 AGAACGGAGGTAGTACATGATACT 58.307 41.667 0.00 6.46 0.00 2.12
2001 2188 7.502120 TTAGAACGGAGGTAGTACATGATAC 57.498 40.000 0.00 0.00 0.00 2.24
2002 2189 8.523915 TTTTAGAACGGAGGTAGTACATGATA 57.476 34.615 0.00 0.00 0.00 2.15
2003 2190 7.414222 TTTTAGAACGGAGGTAGTACATGAT 57.586 36.000 0.00 0.00 0.00 2.45
2004 2191 6.839124 TTTTAGAACGGAGGTAGTACATGA 57.161 37.500 0.00 0.00 0.00 3.07
2013 2200 9.847224 AAACATCATATATTTTAGAACGGAGGT 57.153 29.630 0.00 0.00 0.00 3.85
2028 2215 8.591072 GGTACTAGCCTACCAAAACATCATATA 58.409 37.037 4.96 0.00 36.84 0.86
2029 2216 7.450903 GGTACTAGCCTACCAAAACATCATAT 58.549 38.462 4.96 0.00 36.84 1.78
2030 2217 6.461927 CGGTACTAGCCTACCAAAACATCATA 60.462 42.308 9.55 0.00 36.67 2.15
2031 2218 5.681639 GGTACTAGCCTACCAAAACATCAT 58.318 41.667 4.96 0.00 36.84 2.45
2032 2219 4.382254 CGGTACTAGCCTACCAAAACATCA 60.382 45.833 9.55 0.00 36.67 3.07
2033 2220 4.117685 CGGTACTAGCCTACCAAAACATC 58.882 47.826 9.55 0.00 36.67 3.06
2034 2221 3.770933 TCGGTACTAGCCTACCAAAACAT 59.229 43.478 9.55 0.00 36.67 2.71
2035 2222 3.164268 TCGGTACTAGCCTACCAAAACA 58.836 45.455 9.55 0.00 36.67 2.83
2036 2223 3.874392 TCGGTACTAGCCTACCAAAAC 57.126 47.619 9.55 0.00 36.67 2.43
2037 2224 4.568956 GTTTCGGTACTAGCCTACCAAAA 58.431 43.478 9.55 1.99 36.67 2.44
2038 2225 3.367292 CGTTTCGGTACTAGCCTACCAAA 60.367 47.826 9.55 6.68 36.67 3.28
2039 2226 2.164219 CGTTTCGGTACTAGCCTACCAA 59.836 50.000 9.55 2.06 36.67 3.67
2040 2227 1.745087 CGTTTCGGTACTAGCCTACCA 59.255 52.381 9.55 0.00 36.67 3.25
2041 2228 1.745653 ACGTTTCGGTACTAGCCTACC 59.254 52.381 0.00 0.34 33.87 3.18
2042 2229 2.420022 TGACGTTTCGGTACTAGCCTAC 59.580 50.000 0.00 0.00 0.00 3.18
2043 2230 2.710377 TGACGTTTCGGTACTAGCCTA 58.290 47.619 0.00 0.00 0.00 3.93
2044 2231 1.538047 TGACGTTTCGGTACTAGCCT 58.462 50.000 0.00 0.00 0.00 4.58
2045 2232 2.573941 ATGACGTTTCGGTACTAGCC 57.426 50.000 0.00 0.00 0.00 3.93
2046 2233 7.864307 AAATATATGACGTTTCGGTACTAGC 57.136 36.000 0.00 0.00 0.00 3.42
2051 2238 8.957028 CGTTCTAAAATATATGACGTTTCGGTA 58.043 33.333 0.00 0.00 0.00 4.02
2052 2239 7.043192 CCGTTCTAAAATATATGACGTTTCGGT 60.043 37.037 0.00 0.00 0.00 4.69
2053 2240 7.167968 TCCGTTCTAAAATATATGACGTTTCGG 59.832 37.037 0.00 0.00 0.00 4.30
2054 2241 8.053411 TCCGTTCTAAAATATATGACGTTTCG 57.947 34.615 0.00 0.00 0.00 3.46
2055 2242 8.485591 CCTCCGTTCTAAAATATATGACGTTTC 58.514 37.037 0.00 0.00 0.00 2.78
2056 2243 7.983484 ACCTCCGTTCTAAAATATATGACGTTT 59.017 33.333 0.00 0.00 0.00 3.60
2057 2244 7.495055 ACCTCCGTTCTAAAATATATGACGTT 58.505 34.615 0.00 0.00 0.00 3.99
2058 2245 7.047460 ACCTCCGTTCTAAAATATATGACGT 57.953 36.000 0.00 0.00 0.00 4.34
2059 2246 7.941795 AACCTCCGTTCTAAAATATATGACG 57.058 36.000 0.00 0.00 0.00 4.35
2063 2250 9.281371 GGCTAAAACCTCCGTTCTAAAATATAT 57.719 33.333 0.00 0.00 0.00 0.86
2064 2251 8.488668 AGGCTAAAACCTCCGTTCTAAAATATA 58.511 33.333 0.00 0.00 33.62 0.86
2065 2252 7.344134 AGGCTAAAACCTCCGTTCTAAAATAT 58.656 34.615 0.00 0.00 33.62 1.28
2066 2253 6.714278 AGGCTAAAACCTCCGTTCTAAAATA 58.286 36.000 0.00 0.00 33.62 1.40
2067 2254 5.567430 AGGCTAAAACCTCCGTTCTAAAAT 58.433 37.500 0.00 0.00 33.62 1.82
2068 2255 4.976864 AGGCTAAAACCTCCGTTCTAAAA 58.023 39.130 0.00 0.00 33.62 1.52
2069 2256 4.628963 AGGCTAAAACCTCCGTTCTAAA 57.371 40.909 0.00 0.00 33.62 1.85
2070 2257 4.081476 GGTAGGCTAAAACCTCCGTTCTAA 60.081 45.833 0.00 0.00 41.50 2.10
2071 2258 3.448660 GGTAGGCTAAAACCTCCGTTCTA 59.551 47.826 0.00 0.00 41.50 2.10
2072 2259 2.235650 GGTAGGCTAAAACCTCCGTTCT 59.764 50.000 0.00 0.00 41.50 3.01
2073 2260 2.027837 TGGTAGGCTAAAACCTCCGTTC 60.028 50.000 6.50 0.00 41.50 3.95
2074 2261 1.980036 TGGTAGGCTAAAACCTCCGTT 59.020 47.619 6.50 0.00 41.50 4.44
2075 2262 1.648116 TGGTAGGCTAAAACCTCCGT 58.352 50.000 6.50 0.00 41.50 4.69
2076 2263 2.773993 TTGGTAGGCTAAAACCTCCG 57.226 50.000 6.50 0.00 41.50 4.63
2077 2264 3.189910 CGTTTTGGTAGGCTAAAACCTCC 59.810 47.826 15.06 4.54 46.53 4.30
2078 2265 3.817084 ACGTTTTGGTAGGCTAAAACCTC 59.183 43.478 15.06 0.00 46.53 3.85
2079 2266 3.817084 GACGTTTTGGTAGGCTAAAACCT 59.183 43.478 15.06 6.84 46.53 3.50
2080 2267 3.565063 TGACGTTTTGGTAGGCTAAAACC 59.435 43.478 15.06 8.00 46.53 3.27
2081 2268 4.816786 TGACGTTTTGGTAGGCTAAAAC 57.183 40.909 12.12 12.12 46.10 2.43
2082 2269 8.967664 ATATATGACGTTTTGGTAGGCTAAAA 57.032 30.769 0.00 0.00 33.60 1.52
2083 2270 8.967664 AATATATGACGTTTTGGTAGGCTAAA 57.032 30.769 0.00 0.00 0.00 1.85
2084 2271 8.967664 AAATATATGACGTTTTGGTAGGCTAA 57.032 30.769 0.00 0.00 0.00 3.09
2085 2272 8.967664 AAAATATATGACGTTTTGGTAGGCTA 57.032 30.769 0.00 0.00 0.00 3.93
2086 2273 7.875327 AAAATATATGACGTTTTGGTAGGCT 57.125 32.000 0.00 0.00 0.00 4.58
2087 2274 9.048446 TCTAAAATATATGACGTTTTGGTAGGC 57.952 33.333 0.00 0.00 0.00 3.93
2091 2278 7.906527 GCGTTCTAAAATATATGACGTTTTGGT 59.093 33.333 0.00 0.00 0.00 3.67
2092 2279 7.906010 TGCGTTCTAAAATATATGACGTTTTGG 59.094 33.333 0.00 0.00 0.00 3.28
2093 2280 8.814733 TGCGTTCTAAAATATATGACGTTTTG 57.185 30.769 0.00 0.00 0.00 2.44
2094 2281 8.120465 CCTGCGTTCTAAAATATATGACGTTTT 58.880 33.333 0.00 0.00 0.00 2.43
2095 2282 7.279313 ACCTGCGTTCTAAAATATATGACGTTT 59.721 33.333 0.00 0.00 0.00 3.60
2096 2283 6.759827 ACCTGCGTTCTAAAATATATGACGTT 59.240 34.615 0.00 0.00 0.00 3.99
2097 2284 6.278363 ACCTGCGTTCTAAAATATATGACGT 58.722 36.000 0.00 0.00 0.00 4.34
2098 2285 6.764877 ACCTGCGTTCTAAAATATATGACG 57.235 37.500 0.00 0.00 0.00 4.35
2099 2286 8.813643 ACTACCTGCGTTCTAAAATATATGAC 57.186 34.615 0.00 0.00 0.00 3.06
2100 2287 9.903682 GTACTACCTGCGTTCTAAAATATATGA 57.096 33.333 0.00 0.00 0.00 2.15
2101 2288 9.909644 AGTACTACCTGCGTTCTAAAATATATG 57.090 33.333 0.00 0.00 0.00 1.78
2104 2291 9.347240 TCTAGTACTACCTGCGTTCTAAAATAT 57.653 33.333 0.00 0.00 0.00 1.28
2105 2292 8.616076 GTCTAGTACTACCTGCGTTCTAAAATA 58.384 37.037 0.00 0.00 0.00 1.40
2106 2293 7.121759 TGTCTAGTACTACCTGCGTTCTAAAAT 59.878 37.037 0.00 0.00 0.00 1.82
2107 2294 6.430925 TGTCTAGTACTACCTGCGTTCTAAAA 59.569 38.462 0.00 0.00 0.00 1.52
2108 2295 5.939883 TGTCTAGTACTACCTGCGTTCTAAA 59.060 40.000 0.00 0.00 0.00 1.85
2109 2296 5.352569 GTGTCTAGTACTACCTGCGTTCTAA 59.647 44.000 0.00 0.00 0.00 2.10
2110 2297 4.872691 GTGTCTAGTACTACCTGCGTTCTA 59.127 45.833 0.00 0.00 0.00 2.10
2111 2298 3.688673 GTGTCTAGTACTACCTGCGTTCT 59.311 47.826 0.00 0.00 0.00 3.01
2112 2299 3.688673 AGTGTCTAGTACTACCTGCGTTC 59.311 47.826 0.00 0.00 0.00 3.95
2113 2300 3.439476 CAGTGTCTAGTACTACCTGCGTT 59.561 47.826 0.00 0.00 0.00 4.84
2114 2301 3.008330 CAGTGTCTAGTACTACCTGCGT 58.992 50.000 0.00 0.00 0.00 5.24
2115 2302 2.223294 GCAGTGTCTAGTACTACCTGCG 60.223 54.545 16.60 2.86 36.24 5.18
2116 2303 3.018149 AGCAGTGTCTAGTACTACCTGC 58.982 50.000 20.44 20.44 41.37 4.85
2117 2304 5.881443 AGTTAGCAGTGTCTAGTACTACCTG 59.119 44.000 0.00 4.58 0.00 4.00
2118 2305 6.064735 AGTTAGCAGTGTCTAGTACTACCT 57.935 41.667 0.00 5.37 0.00 3.08
2119 2306 7.047271 AGTAGTTAGCAGTGTCTAGTACTACC 58.953 42.308 19.62 0.00 35.49 3.18
2120 2307 8.491331 AAGTAGTTAGCAGTGTCTAGTACTAC 57.509 38.462 17.75 17.75 35.32 2.73
2121 2308 9.160496 GAAAGTAGTTAGCAGTGTCTAGTACTA 57.840 37.037 1.89 1.89 0.00 1.82
2122 2309 7.664731 TGAAAGTAGTTAGCAGTGTCTAGTACT 59.335 37.037 0.00 0.00 0.00 2.73
2123 2310 7.814642 TGAAAGTAGTTAGCAGTGTCTAGTAC 58.185 38.462 0.00 0.00 0.00 2.73
2124 2311 7.361885 GCTGAAAGTAGTTAGCAGTGTCTAGTA 60.362 40.741 12.21 0.00 36.24 1.82
2125 2312 6.570764 GCTGAAAGTAGTTAGCAGTGTCTAGT 60.571 42.308 12.21 0.00 36.24 2.57
2152 2339 7.293073 ACTGGCCAAAGACATCAGAATATAAT 58.707 34.615 7.01 0.00 0.00 1.28
2153 2340 6.662755 ACTGGCCAAAGACATCAGAATATAA 58.337 36.000 7.01 0.00 0.00 0.98
2159 2346 2.957402 AACTGGCCAAAGACATCAGA 57.043 45.000 7.01 0.00 0.00 3.27
2164 2351 4.679372 GCAAAAACTAACTGGCCAAAGACA 60.679 41.667 7.01 0.00 0.00 3.41
2165 2352 3.802139 GCAAAAACTAACTGGCCAAAGAC 59.198 43.478 7.01 0.00 0.00 3.01
2172 2359 5.633601 GGTTATTCAGCAAAAACTAACTGGC 59.366 40.000 0.00 0.00 0.00 4.85
2173 2360 6.744112 TGGTTATTCAGCAAAAACTAACTGG 58.256 36.000 0.00 0.00 0.00 4.00
2175 2362 8.637986 TCAATGGTTATTCAGCAAAAACTAACT 58.362 29.630 0.00 0.00 36.17 2.24
2176 2363 8.810652 TCAATGGTTATTCAGCAAAAACTAAC 57.189 30.769 0.00 0.00 36.17 2.34
2179 2366 9.807649 GATATCAATGGTTATTCAGCAAAAACT 57.192 29.630 0.00 0.00 36.17 2.66
2180 2367 9.807649 AGATATCAATGGTTATTCAGCAAAAAC 57.192 29.630 5.32 0.00 36.17 2.43
2181 2368 9.806203 CAGATATCAATGGTTATTCAGCAAAAA 57.194 29.630 5.32 0.00 36.17 1.94
2195 2382 7.013823 AGAACAGGATACCAGATATCAATGG 57.986 40.000 5.32 7.45 41.51 3.16
2196 2383 8.915057 AAAGAACAGGATACCAGATATCAATG 57.085 34.615 5.32 0.00 41.51 2.82
2199 2386 8.324191 AGAAAAGAACAGGATACCAGATATCA 57.676 34.615 5.32 0.00 41.51 2.15
2200 2387 7.875554 GGAGAAAAGAACAGGATACCAGATATC 59.124 40.741 0.00 0.00 39.31 1.63
2201 2388 7.570607 AGGAGAAAAGAACAGGATACCAGATAT 59.429 37.037 0.00 0.00 37.17 1.63
2202 2389 6.903534 AGGAGAAAAGAACAGGATACCAGATA 59.096 38.462 0.00 0.00 37.17 1.98
2203 2390 5.728741 AGGAGAAAAGAACAGGATACCAGAT 59.271 40.000 0.00 0.00 37.17 2.90
2205 2392 5.428184 AGGAGAAAAGAACAGGATACCAG 57.572 43.478 0.00 0.00 37.17 4.00
2206 2393 5.843019 AAGGAGAAAAGAACAGGATACCA 57.157 39.130 0.00 0.00 37.17 3.25
2207 2394 5.106118 GCAAAGGAGAAAAGAACAGGATACC 60.106 44.000 0.00 0.00 37.17 2.73
2209 2396 5.707298 CAGCAAAGGAGAAAAGAACAGGATA 59.293 40.000 0.00 0.00 0.00 2.59
2210 2397 4.522022 CAGCAAAGGAGAAAAGAACAGGAT 59.478 41.667 0.00 0.00 0.00 3.24
2213 2400 4.818546 TCTCAGCAAAGGAGAAAAGAACAG 59.181 41.667 0.00 0.00 38.40 3.16
2214 2401 4.780815 TCTCAGCAAAGGAGAAAAGAACA 58.219 39.130 0.00 0.00 38.40 3.18
2215 2402 5.471456 TCATCTCAGCAAAGGAGAAAAGAAC 59.529 40.000 0.00 0.00 44.01 3.01
2216 2403 5.624159 TCATCTCAGCAAAGGAGAAAAGAA 58.376 37.500 0.00 0.00 44.01 2.52
2217 2404 5.233083 TCATCTCAGCAAAGGAGAAAAGA 57.767 39.130 0.00 0.00 44.01 2.52
2218 2405 6.512342 AATCATCTCAGCAAAGGAGAAAAG 57.488 37.500 0.00 0.00 44.01 2.27
2223 2426 3.937706 ACGAAATCATCTCAGCAAAGGAG 59.062 43.478 0.00 0.00 0.00 3.69
2229 2432 3.874392 TGAGACGAAATCATCTCAGCA 57.126 42.857 5.17 0.00 45.01 4.41
2234 2437 5.645067 TGCAGAATTTGAGACGAAATCATCT 59.355 36.000 0.00 0.00 0.00 2.90
2239 2442 6.820656 AGTATCTGCAGAATTTGAGACGAAAT 59.179 34.615 22.50 0.81 0.00 2.17
2244 2447 6.402983 CCACAAGTATCTGCAGAATTTGAGAC 60.403 42.308 29.43 14.01 0.00 3.36
2245 2448 5.645067 CCACAAGTATCTGCAGAATTTGAGA 59.355 40.000 29.43 7.63 0.00 3.27
2246 2449 5.675575 GCCACAAGTATCTGCAGAATTTGAG 60.676 44.000 29.43 24.26 0.00 3.02
2247 2450 4.156556 GCCACAAGTATCTGCAGAATTTGA 59.843 41.667 29.43 8.90 0.00 2.69
2249 2452 3.127548 CGCCACAAGTATCTGCAGAATTT 59.872 43.478 22.50 12.33 0.00 1.82
2255 2458 2.279741 GAATCGCCACAAGTATCTGCA 58.720 47.619 0.00 0.00 0.00 4.41
2256 2459 2.279741 TGAATCGCCACAAGTATCTGC 58.720 47.619 0.00 0.00 0.00 4.26
2260 2463 3.009723 CACCTTGAATCGCCACAAGTAT 58.990 45.455 0.00 0.00 40.98 2.12
2272 2475 2.301870 TCACCGTTAGAGCACCTTGAAT 59.698 45.455 0.00 0.00 0.00 2.57
2343 2546 1.531149 TCGCTGTTAGTGCTTTCTTGC 59.469 47.619 0.00 0.00 0.00 4.01
2362 2565 4.021104 TGCATACATAGGCTATGGACTGTC 60.021 45.833 31.88 20.97 40.47 3.51
2373 2576 4.446371 AGAAAGAGTGTGCATACATAGGC 58.554 43.478 16.44 2.37 39.39 3.93
2377 2580 4.456280 TCGAGAAAGAGTGTGCATACAT 57.544 40.909 16.44 0.77 39.39 2.29
2384 2587 4.302455 ACAGATGTTCGAGAAAGAGTGTG 58.698 43.478 0.00 0.00 0.00 3.82
2385 2588 4.279671 AGACAGATGTTCGAGAAAGAGTGT 59.720 41.667 0.00 0.00 0.00 3.55
2416 2619 3.320256 AGGAAAAAGAAGCTGAAGCCTTG 59.680 43.478 0.00 0.00 43.38 3.61
2417 2620 3.570540 AGGAAAAAGAAGCTGAAGCCTT 58.429 40.909 0.00 0.00 43.38 4.35
2419 2622 3.068732 ACAAGGAAAAAGAAGCTGAAGCC 59.931 43.478 0.00 0.00 43.38 4.35
2457 2660 6.325596 AGAAAAAGTTTGTCAGTCAAGAAGC 58.674 36.000 8.50 0.00 37.35 3.86
2474 2677 9.760660 CGGTATTCAAATCTACAGAAGAAAAAG 57.239 33.333 0.00 0.00 37.89 2.27
2520 2724 1.373570 GGGTTTCGAATCAGGAGCAG 58.626 55.000 0.00 0.00 0.00 4.24
2521 2727 0.035439 GGGGTTTCGAATCAGGAGCA 60.035 55.000 0.00 0.00 0.00 4.26
2522 2728 0.748367 GGGGGTTTCGAATCAGGAGC 60.748 60.000 0.00 0.00 0.00 4.70
2524 2730 1.600107 CGGGGGTTTCGAATCAGGA 59.400 57.895 0.00 0.00 0.00 3.86
2535 2741 0.032217 ATCCATCATTTGCGGGGGTT 60.032 50.000 0.00 0.00 0.00 4.11
2537 2743 2.043625 CATCCATCATTTGCGGGGG 58.956 57.895 0.00 0.00 0.00 5.40
2538 2744 1.364901 GCATCCATCATTTGCGGGG 59.635 57.895 0.00 0.00 0.00 5.73
2539 2745 0.460722 TTGCATCCATCATTTGCGGG 59.539 50.000 0.00 0.00 39.23 6.13
2540 2746 1.928503 GTTTGCATCCATCATTTGCGG 59.071 47.619 0.00 0.00 39.23 5.69
2541 2747 2.608268 TGTTTGCATCCATCATTTGCG 58.392 42.857 0.00 0.00 39.23 4.85
2560 2766 5.061920 AGTAGCTTTCTTCGTCTACCTTG 57.938 43.478 0.00 0.00 33.70 3.61
2570 2776 1.478916 AGCCTCCGAGTAGCTTTCTTC 59.521 52.381 0.00 0.00 31.27 2.87
2578 2784 0.889638 TATGGCGAGCCTCCGAGTAG 60.890 60.000 15.75 0.00 36.94 2.57
2584 2790 2.297701 TCATTTTTATGGCGAGCCTCC 58.702 47.619 15.75 0.00 36.94 4.30
2589 2795 5.007234 TGTCGGTAATCATTTTTATGGCGAG 59.993 40.000 0.00 0.00 0.00 5.03
2592 2798 5.519722 CCTGTCGGTAATCATTTTTATGGC 58.480 41.667 0.00 0.00 0.00 4.40
2602 2808 1.751351 CTCTCAGCCTGTCGGTAATCA 59.249 52.381 0.00 0.00 0.00 2.57
2609 2815 2.447244 AAGTTTCTCTCAGCCTGTCG 57.553 50.000 0.00 0.00 0.00 4.35
2615 2821 8.049655 AGATGGAAAATTAAGTTTCTCTCAGC 57.950 34.615 23.21 16.73 37.60 4.26
2617 2823 9.799106 AGAAGATGGAAAATTAAGTTTCTCTCA 57.201 29.630 23.21 15.30 37.60 3.27
2646 2852 9.461312 TTGAACTGGCATTTGTATTATAGTCTT 57.539 29.630 0.00 0.00 0.00 3.01
2647 2853 9.461312 TTTGAACTGGCATTTGTATTATAGTCT 57.539 29.630 0.00 0.00 0.00 3.24
2657 2863 6.183360 GGATTTGTTTTTGAACTGGCATTTGT 60.183 34.615 0.00 0.00 0.00 2.83
2664 2870 4.126437 GGGTGGATTTGTTTTTGAACTGG 58.874 43.478 0.00 0.00 0.00 4.00
2676 2882 4.959723 ACACAAATTTCAGGGTGGATTTG 58.040 39.130 10.18 6.21 42.33 2.32
2713 2919 4.873817 TGACATTCAAATGCAAGGACTTG 58.126 39.130 7.67 7.67 40.04 3.16
2714 2920 5.475719 CATGACATTCAAATGCAAGGACTT 58.524 37.500 2.66 0.00 40.04 3.01
2715 2921 4.619863 GCATGACATTCAAATGCAAGGACT 60.620 41.667 0.00 0.00 44.83 3.85
2716 2922 3.615496 GCATGACATTCAAATGCAAGGAC 59.385 43.478 0.00 0.00 44.83 3.85
2722 2928 2.028763 CGCTTGCATGACATTCAAATGC 59.971 45.455 3.33 2.70 45.51 3.56
2723 2929 3.060230 CACGCTTGCATGACATTCAAATG 59.940 43.478 3.33 1.20 42.10 2.32
2772 3062 9.019656 AGGTGAATGATAATCTGCTACTAGTAG 57.980 37.037 23.25 23.25 36.29 2.57
2773 3063 8.797438 CAGGTGAATGATAATCTGCTACTAGTA 58.203 37.037 1.89 1.89 0.00 1.82
2774 3064 7.665690 CAGGTGAATGATAATCTGCTACTAGT 58.334 38.462 0.00 0.00 0.00 2.57
2775 3065 6.589523 GCAGGTGAATGATAATCTGCTACTAG 59.410 42.308 6.15 0.00 42.77 2.57
2776 3066 6.459066 GCAGGTGAATGATAATCTGCTACTA 58.541 40.000 6.15 0.00 42.77 1.82
2777 3067 5.303971 GCAGGTGAATGATAATCTGCTACT 58.696 41.667 6.15 0.00 42.77 2.57
2778 3068 4.151335 CGCAGGTGAATGATAATCTGCTAC 59.849 45.833 10.43 0.00 43.57 3.58
2779 3069 4.309933 CGCAGGTGAATGATAATCTGCTA 58.690 43.478 10.43 0.00 43.57 3.49
2780 3070 3.136763 CGCAGGTGAATGATAATCTGCT 58.863 45.455 10.43 0.00 43.57 4.24
2781 3071 2.350197 GCGCAGGTGAATGATAATCTGC 60.350 50.000 0.30 3.82 42.68 4.26
2782 3072 2.874086 TGCGCAGGTGAATGATAATCTG 59.126 45.455 5.66 0.00 0.00 2.90
2788 3089 2.627515 AGTATGCGCAGGTGAATGAT 57.372 45.000 18.32 0.00 0.00 2.45
2789 3090 2.279741 GAAGTATGCGCAGGTGAATGA 58.720 47.619 18.32 0.00 0.00 2.57
2799 3100 3.065233 TGAACAATGGATGAAGTATGCGC 59.935 43.478 0.00 0.00 0.00 6.09
2800 3101 4.880886 TGAACAATGGATGAAGTATGCG 57.119 40.909 0.00 0.00 0.00 4.73
2809 3110 5.664294 TTTGATCCCTTGAACAATGGATG 57.336 39.130 22.22 0.00 43.05 3.51
2820 3122 6.316140 TCACATCTAAACGATTTGATCCCTTG 59.684 38.462 0.00 0.00 34.71 3.61
2822 3124 5.989477 TCACATCTAAACGATTTGATCCCT 58.011 37.500 0.00 0.00 34.71 4.20
2823 3125 6.677781 TTCACATCTAAACGATTTGATCCC 57.322 37.500 0.00 0.00 38.31 3.85
2825 3127 9.226345 GGAATTTCACATCTAAACGATTTGATC 57.774 33.333 0.00 0.00 38.31 2.92
2826 3128 8.960591 AGGAATTTCACATCTAAACGATTTGAT 58.039 29.630 0.00 0.00 38.31 2.57
2828 3130 7.008628 GCAGGAATTTCACATCTAAACGATTTG 59.991 37.037 0.00 0.00 32.32 2.32
2829 3131 7.029563 GCAGGAATTTCACATCTAAACGATTT 58.970 34.615 0.00 0.00 0.00 2.17
2838 3140 2.012673 GCTCGCAGGAATTTCACATCT 58.987 47.619 0.00 0.00 0.00 2.90
2871 3173 1.133253 CACCGAGCGATGCACTTTG 59.867 57.895 0.00 0.00 0.00 2.77
2872 3174 1.301716 ACACCGAGCGATGCACTTT 60.302 52.632 0.00 0.00 0.00 2.66
2876 3178 2.432456 GTCACACCGAGCGATGCA 60.432 61.111 0.00 0.00 0.00 3.96
2877 3179 3.545481 CGTCACACCGAGCGATGC 61.545 66.667 0.00 0.00 0.00 3.91
2881 3183 1.585521 GGTATCGTCACACCGAGCG 60.586 63.158 0.00 0.00 40.68 5.03
2897 3207 4.803329 AAATTAGCATCATGAGGAGGGT 57.197 40.909 12.39 4.12 41.47 4.34
2923 3234 4.158579 GTGATCTGGGGTCAAAAATTCCTC 59.841 45.833 0.00 0.00 0.00 3.71
2925 3236 3.831911 TGTGATCTGGGGTCAAAAATTCC 59.168 43.478 0.00 0.00 0.00 3.01
2926 3237 5.665916 ATGTGATCTGGGGTCAAAAATTC 57.334 39.130 0.00 0.00 0.00 2.17
2927 3238 5.046376 GGAATGTGATCTGGGGTCAAAAATT 60.046 40.000 0.00 0.00 0.00 1.82
2928 3239 4.467438 GGAATGTGATCTGGGGTCAAAAAT 59.533 41.667 0.00 0.00 0.00 1.82
2929 3240 3.831911 GGAATGTGATCTGGGGTCAAAAA 59.168 43.478 0.00 0.00 0.00 1.94
2930 3241 3.430453 GGAATGTGATCTGGGGTCAAAA 58.570 45.455 0.00 0.00 0.00 2.44
2931 3242 2.291540 GGGAATGTGATCTGGGGTCAAA 60.292 50.000 0.00 0.00 0.00 2.69
2932 3243 1.284785 GGGAATGTGATCTGGGGTCAA 59.715 52.381 0.00 0.00 0.00 3.18
2933 3244 0.918983 GGGAATGTGATCTGGGGTCA 59.081 55.000 0.00 0.00 0.00 4.02
2934 3245 1.133976 CAGGGAATGTGATCTGGGGTC 60.134 57.143 0.00 0.00 0.00 4.46
2936 3247 0.184451 CCAGGGAATGTGATCTGGGG 59.816 60.000 0.00 0.00 42.12 4.96
2937 3248 3.815133 CCAGGGAATGTGATCTGGG 57.185 57.895 0.00 0.00 42.12 4.45
2939 3250 3.452264 TGAGTACCAGGGAATGTGATCTG 59.548 47.826 0.00 0.00 0.00 2.90
2941 3252 3.452627 AGTGAGTACCAGGGAATGTGATC 59.547 47.826 0.00 0.00 0.00 2.92
2942 3253 3.454858 AGTGAGTACCAGGGAATGTGAT 58.545 45.455 0.00 0.00 0.00 3.06
2943 3254 2.902608 AGTGAGTACCAGGGAATGTGA 58.097 47.619 0.00 0.00 0.00 3.58
2945 3256 3.008049 GTCAAGTGAGTACCAGGGAATGT 59.992 47.826 0.00 0.00 0.00 2.71
2946 3257 3.261897 AGTCAAGTGAGTACCAGGGAATG 59.738 47.826 0.00 0.00 0.00 2.67
2947 3258 3.521727 AGTCAAGTGAGTACCAGGGAAT 58.478 45.455 0.00 0.00 0.00 3.01
2948 3259 2.972348 AGTCAAGTGAGTACCAGGGAA 58.028 47.619 0.00 0.00 0.00 3.97
2950 3261 2.289694 CCAAGTCAAGTGAGTACCAGGG 60.290 54.545 0.00 0.00 0.00 4.45
2951 3262 2.368875 ACCAAGTCAAGTGAGTACCAGG 59.631 50.000 0.00 0.00 0.00 4.45
2952 3263 3.753294 ACCAAGTCAAGTGAGTACCAG 57.247 47.619 0.00 0.00 0.00 4.00
2953 3264 3.491964 CGAACCAAGTCAAGTGAGTACCA 60.492 47.826 0.00 0.00 0.00 3.25
2954 3265 3.057734 CGAACCAAGTCAAGTGAGTACC 58.942 50.000 0.00 0.00 0.00 3.34
2955 3266 3.489785 CACGAACCAAGTCAAGTGAGTAC 59.510 47.826 0.00 0.00 0.00 2.73
2956 3267 3.713288 CACGAACCAAGTCAAGTGAGTA 58.287 45.455 0.00 0.00 0.00 2.59
2957 3268 2.550978 CACGAACCAAGTCAAGTGAGT 58.449 47.619 0.00 0.00 0.00 3.41
2958 3269 1.261619 GCACGAACCAAGTCAAGTGAG 59.738 52.381 0.00 0.00 0.00 3.51
2959 3270 1.295792 GCACGAACCAAGTCAAGTGA 58.704 50.000 0.00 0.00 0.00 3.41
2960 3271 0.042188 CGCACGAACCAAGTCAAGTG 60.042 55.000 0.00 0.00 0.00 3.16
2998 3309 2.265073 ATATGTTTGGCACCGCGCAC 62.265 55.000 8.75 0.00 45.17 5.34
3004 3315 2.666022 GCGTTTCAATATGTTTGGCACC 59.334 45.455 0.00 0.00 0.00 5.01
3005 3316 3.364621 CAGCGTTTCAATATGTTTGGCAC 59.635 43.478 0.00 0.00 0.00 5.01
3007 3318 2.345341 GCAGCGTTTCAATATGTTTGGC 59.655 45.455 0.00 0.00 0.00 4.52
3008 3319 3.364621 GTGCAGCGTTTCAATATGTTTGG 59.635 43.478 0.00 0.00 0.00 3.28
3009 3320 3.364621 GGTGCAGCGTTTCAATATGTTTG 59.635 43.478 0.00 0.00 0.00 2.93
3010 3321 3.574614 GGTGCAGCGTTTCAATATGTTT 58.425 40.909 0.00 0.00 0.00 2.83
3011 3322 2.094752 GGGTGCAGCGTTTCAATATGTT 60.095 45.455 10.24 0.00 0.00 2.71
3012 3323 1.472480 GGGTGCAGCGTTTCAATATGT 59.528 47.619 10.24 0.00 0.00 2.29
3013 3324 1.745087 AGGGTGCAGCGTTTCAATATG 59.255 47.619 10.24 0.00 0.00 1.78
3015 3326 1.164411 CAGGGTGCAGCGTTTCAATA 58.836 50.000 8.63 0.00 0.00 1.90
3016 3327 1.959085 CAGGGTGCAGCGTTTCAAT 59.041 52.632 8.63 0.00 0.00 2.57
3017 3328 2.844451 GCAGGGTGCAGCGTTTCAA 61.844 57.895 8.63 0.00 44.26 2.69
3018 3329 3.286751 GCAGGGTGCAGCGTTTCA 61.287 61.111 8.63 0.00 44.26 2.69
3032 3343 1.451504 TGAACCTGTCCTGGTGCAG 59.548 57.895 11.95 11.95 40.57 4.41
3056 3367 0.692419 ACCGGAGATCATTCCCTGCT 60.692 55.000 9.46 0.00 33.46 4.24
3059 3370 1.700042 GGCACCGGAGATCATTCCCT 61.700 60.000 9.46 0.00 33.46 4.20
3062 3373 2.044123 AAAGGCACCGGAGATCATTC 57.956 50.000 9.46 0.00 0.00 2.67
3070 3381 2.652313 CCATTGAAAAGGCACCGGA 58.348 52.632 9.46 0.00 0.00 5.14
3081 3392 4.794648 CCTCCCCGCGCCATTGAA 62.795 66.667 0.00 0.00 0.00 2.69
3091 3402 4.271816 CGATGCTCGACCTCCCCG 62.272 72.222 0.00 0.00 43.74 5.73
3101 3412 1.943340 GGAGGTTTCATTCCGATGCTC 59.057 52.381 0.00 0.00 33.14 4.26
3107 3425 1.812571 CCAAGTGGAGGTTTCATTCCG 59.187 52.381 0.00 0.00 36.22 4.30
3134 3452 2.678934 TCGAGTCCGGGTTCCCTG 60.679 66.667 0.00 0.00 36.24 4.45
3135 3453 2.679287 GTCGAGTCCGGGTTCCCT 60.679 66.667 0.00 0.00 36.24 4.20
3136 3454 2.356780 ATGTCGAGTCCGGGTTCCC 61.357 63.158 0.00 0.00 36.24 3.97
3209 3527 3.072476 AGCAATGACTCGGGTGCT 58.928 55.556 0.00 0.00 42.40 4.40
3214 3532 2.416747 TCACTTTCAGCAATGACTCGG 58.583 47.619 0.00 0.00 0.00 4.63
3257 3575 1.135315 CGGGATGAAAACACATGCAGG 60.135 52.381 0.00 0.00 39.70 4.85
3258 3576 1.733389 GCGGGATGAAAACACATGCAG 60.733 52.381 0.00 0.00 39.70 4.41
3259 3577 0.243365 GCGGGATGAAAACACATGCA 59.757 50.000 0.00 0.00 39.70 3.96
3260 3578 0.458370 GGCGGGATGAAAACACATGC 60.458 55.000 0.00 0.00 37.77 4.06
3261 3579 0.173255 GGGCGGGATGAAAACACATG 59.827 55.000 0.00 0.00 0.00 3.21
3262 3580 0.039618 AGGGCGGGATGAAAACACAT 59.960 50.000 0.00 0.00 0.00 3.21
3263 3581 0.893270 CAGGGCGGGATGAAAACACA 60.893 55.000 0.00 0.00 0.00 3.72
3264 3582 1.883021 CAGGGCGGGATGAAAACAC 59.117 57.895 0.00 0.00 0.00 3.32
3265 3583 1.976474 GCAGGGCGGGATGAAAACA 60.976 57.895 0.00 0.00 0.00 2.83
3266 3584 1.678970 AGCAGGGCGGGATGAAAAC 60.679 57.895 0.00 0.00 0.00 2.43
3267 3585 1.678635 CAGCAGGGCGGGATGAAAA 60.679 57.895 0.00 0.00 0.00 2.29
3268 3586 2.045045 CAGCAGGGCGGGATGAAA 60.045 61.111 0.00 0.00 0.00 2.69
3269 3587 4.113815 CCAGCAGGGCGGGATGAA 62.114 66.667 0.85 0.00 46.43 2.57
3284 3602 2.842496 AGATTGTTGAGATGGCTCTCCA 59.158 45.455 10.22 0.00 46.28 3.86
3285 3603 3.118482 TGAGATTGTTGAGATGGCTCTCC 60.118 47.826 10.22 0.00 46.28 3.71
3286 3604 4.134379 TGAGATTGTTGAGATGGCTCTC 57.866 45.455 6.92 6.92 46.89 3.20
3287 3605 4.564782 TTGAGATTGTTGAGATGGCTCT 57.435 40.909 0.00 0.00 41.84 4.09
3288 3606 4.456911 TGTTTGAGATTGTTGAGATGGCTC 59.543 41.667 0.00 0.00 41.67 4.70
3289 3607 4.401022 TGTTTGAGATTGTTGAGATGGCT 58.599 39.130 0.00 0.00 0.00 4.75
3290 3608 4.217118 ACTGTTTGAGATTGTTGAGATGGC 59.783 41.667 0.00 0.00 0.00 4.40
3291 3609 5.106396 GGACTGTTTGAGATTGTTGAGATGG 60.106 44.000 0.00 0.00 0.00 3.51
3292 3610 5.106396 GGGACTGTTTGAGATTGTTGAGATG 60.106 44.000 0.00 0.00 0.00 2.90
3293 3611 5.006386 GGGACTGTTTGAGATTGTTGAGAT 58.994 41.667 0.00 0.00 0.00 2.75
3294 3612 4.141505 TGGGACTGTTTGAGATTGTTGAGA 60.142 41.667 0.00 0.00 0.00 3.27
3295 3613 4.136796 TGGGACTGTTTGAGATTGTTGAG 58.863 43.478 0.00 0.00 0.00 3.02
3296 3614 4.136796 CTGGGACTGTTTGAGATTGTTGA 58.863 43.478 0.00 0.00 0.00 3.18
3297 3615 4.136796 TCTGGGACTGTTTGAGATTGTTG 58.863 43.478 0.00 0.00 0.00 3.33
3298 3616 4.437682 TCTGGGACTGTTTGAGATTGTT 57.562 40.909 0.00 0.00 0.00 2.83
3299 3617 4.437682 TTCTGGGACTGTTTGAGATTGT 57.562 40.909 0.00 0.00 0.00 2.71
3300 3618 5.772825 TTTTCTGGGACTGTTTGAGATTG 57.227 39.130 0.00 0.00 0.00 2.67
3325 3643 6.544931 GGGGTATGTTGTATAAGAGGTTTTCC 59.455 42.308 0.00 0.00 41.05 3.13
3326 3644 6.544931 GGGGGTATGTTGTATAAGAGGTTTTC 59.455 42.308 0.00 0.00 0.00 2.29
3327 3645 6.218938 AGGGGGTATGTTGTATAAGAGGTTTT 59.781 38.462 0.00 0.00 0.00 2.43
3328 3646 5.734634 AGGGGGTATGTTGTATAAGAGGTTT 59.265 40.000 0.00 0.00 0.00 3.27
3329 3647 5.294473 AGGGGGTATGTTGTATAAGAGGTT 58.706 41.667 0.00 0.00 0.00 3.50
3330 3648 4.904373 AGGGGGTATGTTGTATAAGAGGT 58.096 43.478 0.00 0.00 0.00 3.85
3331 3649 4.286291 GGAGGGGGTATGTTGTATAAGAGG 59.714 50.000 0.00 0.00 0.00 3.69
3332 3650 4.021368 CGGAGGGGGTATGTTGTATAAGAG 60.021 50.000 0.00 0.00 0.00 2.85
3333 3651 3.899360 CGGAGGGGGTATGTTGTATAAGA 59.101 47.826 0.00 0.00 0.00 2.10
3334 3652 3.644738 ACGGAGGGGGTATGTTGTATAAG 59.355 47.826 0.00 0.00 0.00 1.73
3335 3653 3.656496 ACGGAGGGGGTATGTTGTATAA 58.344 45.455 0.00 0.00 0.00 0.98
3336 3654 3.333313 ACGGAGGGGGTATGTTGTATA 57.667 47.619 0.00 0.00 0.00 1.47
3337 3655 2.185663 ACGGAGGGGGTATGTTGTAT 57.814 50.000 0.00 0.00 0.00 2.29
3338 3656 1.955451 AACGGAGGGGGTATGTTGTA 58.045 50.000 0.00 0.00 0.00 2.41
3339 3657 1.003928 GAAACGGAGGGGGTATGTTGT 59.996 52.381 0.00 0.00 0.00 3.32
3340 3658 1.003812 TGAAACGGAGGGGGTATGTTG 59.996 52.381 0.00 0.00 0.00 3.33
3341 3659 1.364269 TGAAACGGAGGGGGTATGTT 58.636 50.000 0.00 0.00 0.00 2.71
3342 3660 1.364269 TTGAAACGGAGGGGGTATGT 58.636 50.000 0.00 0.00 0.00 2.29
3343 3661 2.500392 TTTGAAACGGAGGGGGTATG 57.500 50.000 0.00 0.00 0.00 2.39
3344 3662 3.750501 ATTTTGAAACGGAGGGGGTAT 57.249 42.857 0.00 0.00 0.00 2.73
3345 3663 3.845398 TCTATTTTGAAACGGAGGGGGTA 59.155 43.478 0.00 0.00 0.00 3.69
3346 3664 2.645797 TCTATTTTGAAACGGAGGGGGT 59.354 45.455 0.00 0.00 0.00 4.95
3347 3665 3.359695 TCTATTTTGAAACGGAGGGGG 57.640 47.619 0.00 0.00 0.00 5.40
3348 3666 4.335594 GTCATCTATTTTGAAACGGAGGGG 59.664 45.833 0.00 0.00 0.00 4.79
3349 3667 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
3350 3668 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
3351 3669 5.485662 GGGTCATCTATTTTGAAACGGAG 57.514 43.478 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.