Multiple sequence alignment - TraesCS5D01G314600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G314600 chr5D 100.000 4221 0 0 1 4221 409019731 409015511 0.000000e+00 7795.0
1 TraesCS5D01G314600 chr5D 88.806 134 13 1 4084 4217 423231445 423231314 3.380000e-36 163.0
2 TraesCS5D01G314600 chr5D 94.872 78 1 2 3791 3866 409015867 409015791 7.410000e-23 119.0
3 TraesCS5D01G314600 chr5D 94.872 78 1 2 3865 3941 409015941 409015866 7.410000e-23 119.0
4 TraesCS5D01G314600 chr5B 95.000 1400 55 5 1212 2602 491071418 491070025 0.000000e+00 2183.0
5 TraesCS5D01G314600 chr5B 90.097 1232 95 14 1 1215 491072907 491071686 0.000000e+00 1574.0
6 TraesCS5D01G314600 chr5B 90.890 483 31 3 2768 3246 491069998 491069525 1.660000e-178 636.0
7 TraesCS5D01G314600 chr5B 87.671 438 22 10 3337 3744 491060704 491060269 8.210000e-132 481.0
8 TraesCS5D01G314600 chr5B 89.958 239 21 2 3093 3328 491061747 491061509 5.300000e-79 305.0
9 TraesCS5D01G314600 chr5B 91.121 214 10 6 3865 4073 491046581 491046372 8.940000e-72 281.0
10 TraesCS5D01G314600 chr5B 92.500 120 4 3 3750 3866 491046622 491046505 2.610000e-37 167.0
11 TraesCS5D01G314600 chr5B 87.681 138 14 2 4078 4215 434430207 434430341 1.570000e-34 158.0
12 TraesCS5D01G314600 chr5A 95.673 1248 48 1 1362 2609 520375647 520374406 0.000000e+00 2001.0
13 TraesCS5D01G314600 chr5A 93.103 522 26 3 2783 3298 520374180 520373663 0.000000e+00 756.0
14 TraesCS5D01G314600 chr5A 87.912 637 48 13 708 1331 520376263 520375643 0.000000e+00 723.0
15 TraesCS5D01G314600 chr1D 88.652 141 14 1 4081 4221 37202551 37202689 2.020000e-38 171.0
16 TraesCS5D01G314600 chr4B 87.681 138 15 1 4084 4221 672252919 672252784 4.370000e-35 159.0
17 TraesCS5D01G314600 chr4B 86.957 138 16 1 4084 4221 289037934 289037799 2.030000e-33 154.0
18 TraesCS5D01G314600 chr2D 87.681 138 15 1 4081 4218 95408913 95409048 4.370000e-35 159.0
19 TraesCS5D01G314600 chr7D 87.407 135 15 1 4078 4212 478799385 478799517 2.030000e-33 154.0
20 TraesCS5D01G314600 chr3B 86.957 138 16 2 4084 4221 672957764 672957629 2.030000e-33 154.0
21 TraesCS5D01G314600 chr3B 86.957 138 16 1 4078 4215 795911842 795911977 2.030000e-33 154.0
22 TraesCS5D01G314600 chr3B 82.482 137 23 1 1016 1151 738994497 738994633 7.410000e-23 119.0
23 TraesCS5D01G314600 chr4A 82.569 109 16 3 1044 1151 45131182 45131076 4.490000e-15 93.5
24 TraesCS5D01G314600 chr7B 91.935 62 4 1 1090 1151 489863487 489863547 7.520000e-13 86.1
25 TraesCS5D01G314600 chr7A 96.970 33 1 0 1119 1151 330424129 330424161 5.900000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G314600 chr5D 409015511 409019731 4220 True 2677.666667 7795 96.581333 1 4221 3 chr5D.!!$R2 4220
1 TraesCS5D01G314600 chr5B 491069525 491072907 3382 True 1464.333333 2183 91.995667 1 3246 3 chr5B.!!$R3 3245
2 TraesCS5D01G314600 chr5B 491060269 491061747 1478 True 393.000000 481 88.814500 3093 3744 2 chr5B.!!$R2 651
3 TraesCS5D01G314600 chr5A 520373663 520376263 2600 True 1160.000000 2001 92.229333 708 3298 3 chr5A.!!$R1 2590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.044855 AGAGCCTTCCACCCCTACAT 59.955 55.0 0.0 0.0 0.0 2.29 F
573 579 0.098728 CGGACGGGCAAAAGCAATAG 59.901 55.0 0.0 0.0 0.0 1.73 F
865 871 0.173708 GAGGGTGTACTGAAGCGGAG 59.826 60.0 0.0 0.0 0.0 4.63 F
2439 2734 0.179124 GTGCGAGGACCTGATGAGAC 60.179 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1138 1156 0.613260 GGGTCTGTCTACATGTGCCA 59.387 55.0 9.11 1.15 0.00 4.92 R
2566 2864 1.946475 GAGACAGTACGGGGCTGGTC 61.946 65.0 0.27 0.00 38.22 4.02 R
2721 3047 0.245539 TACTTGCTAGCGGCGAAAGT 59.754 50.0 12.98 18.15 45.43 2.66 R
3985 5199 0.107508 AGGAGGCAACCATGTGATCG 60.108 55.0 3.78 0.00 37.17 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.671054 GCAGTTGCCGGCACTAAGA 60.671 57.895 32.95 12.15 34.31 2.10
64 65 0.249911 GCTAATACCACCAGGAGGCG 60.250 60.000 2.09 0.00 39.06 5.52
90 91 2.925170 ACCCCTGCAGCGAGAGTT 60.925 61.111 8.66 0.00 0.00 3.01
121 122 0.589223 GCCAAATCCGAACACGAACA 59.411 50.000 0.00 0.00 0.00 3.18
130 131 1.795768 GAACACGAACAGAGCATCCA 58.204 50.000 0.00 0.00 33.66 3.41
150 151 0.044855 AGAGCCTTCCACCCCTACAT 59.955 55.000 0.00 0.00 0.00 2.29
151 152 0.470341 GAGCCTTCCACCCCTACATC 59.530 60.000 0.00 0.00 0.00 3.06
161 162 2.822637 CCCTACATCCATGCCGCCT 61.823 63.158 0.00 0.00 0.00 5.52
167 168 2.431454 ATCCATGCCGCCTACACGA 61.431 57.895 0.00 0.00 34.06 4.35
213 214 3.130160 CGAGGCCTGCCAGAAAGC 61.130 66.667 12.00 0.00 38.92 3.51
214 215 3.130160 GAGGCCTGCCAGAAAGCG 61.130 66.667 12.00 0.00 38.92 4.68
244 245 4.240103 TGCCATCCAGGATCGCCG 62.240 66.667 15.83 0.00 41.22 6.46
264 269 0.549950 CCCTGGCATCCTCTGACAAT 59.450 55.000 0.00 0.00 44.22 2.71
265 270 1.676746 CCTGGCATCCTCTGACAATG 58.323 55.000 0.00 0.00 44.22 2.82
280 285 3.243535 TGACAATGCAATACAAACGCCAA 60.244 39.130 0.00 0.00 0.00 4.52
311 316 2.045926 CTCTCCAACCAAGCCCCG 60.046 66.667 0.00 0.00 0.00 5.73
332 337 1.381872 CCTCCACCTCGACCTGGAT 60.382 63.158 0.00 0.00 35.95 3.41
361 366 1.812525 GAGACATGCGCAGGAGAGA 59.187 57.895 30.79 0.00 0.00 3.10
372 377 1.536662 AGGAGAGAAACCAGCCCGT 60.537 57.895 0.00 0.00 0.00 5.28
397 402 2.603473 GGCCCAAGTCAAACCCCC 60.603 66.667 0.00 0.00 0.00 5.40
438 443 5.392057 CCAGCGGAGACCTTTCTTTATTTTC 60.392 44.000 0.00 0.00 29.47 2.29
446 451 8.768501 AGACCTTTCTTTATTTTCAGGAGTTT 57.231 30.769 0.00 0.00 0.00 2.66
525 531 1.202359 GCGAGTTGGTTGCCTGAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
527 533 2.159310 CGAGTTGGTTGCCTGAAAAACA 60.159 45.455 0.00 0.00 0.00 2.83
561 567 4.121317 TGCAATACTTTATAACGGACGGG 58.879 43.478 0.00 0.00 0.00 5.28
564 570 2.766345 ACTTTATAACGGACGGGCAA 57.234 45.000 0.00 0.00 0.00 4.52
573 579 0.098728 CGGACGGGCAAAAGCAATAG 59.901 55.000 0.00 0.00 0.00 1.73
607 613 7.423844 TCTTGGCTTCTATTGTATCTTCTCA 57.576 36.000 0.00 0.00 0.00 3.27
608 614 7.851228 TCTTGGCTTCTATTGTATCTTCTCAA 58.149 34.615 0.00 0.00 0.00 3.02
609 615 7.984050 TCTTGGCTTCTATTGTATCTTCTCAAG 59.016 37.037 0.00 0.00 0.00 3.02
610 616 7.423844 TGGCTTCTATTGTATCTTCTCAAGA 57.576 36.000 0.00 0.00 42.69 3.02
613 619 7.867403 GGCTTCTATTGTATCTTCTCAAGAGAG 59.133 40.741 0.00 0.00 40.97 3.20
621 627 2.202676 CTCAAGAGAGACGCGGCC 60.203 66.667 9.25 0.00 44.98 6.13
641 647 4.580580 GGCCGGAAAGATAAATGATGTTCT 59.419 41.667 5.05 0.00 0.00 3.01
692 698 6.499106 ACAATATATGTGTGTCTGGATCCA 57.501 37.500 15.27 15.27 41.93 3.41
693 699 6.528321 ACAATATATGTGTGTCTGGATCCAG 58.472 40.000 32.60 32.60 41.93 3.86
715 721 3.297134 AAAAACTCTTGGCTCCAGTCA 57.703 42.857 0.00 0.00 0.00 3.41
810 816 5.510520 GCTATCATTCCCTCTCGTCTGAAAT 60.511 44.000 0.00 0.00 0.00 2.17
830 836 9.533253 CTGAAATGGTCTGTTTTAATTTTCACT 57.467 29.630 0.00 0.00 0.00 3.41
862 868 2.457366 AAAGAGGGTGTACTGAAGCG 57.543 50.000 0.00 0.00 0.00 4.68
865 871 0.173708 GAGGGTGTACTGAAGCGGAG 59.826 60.000 0.00 0.00 0.00 4.63
1030 1047 9.855021 AAAATTGTAAATCTAGGTATTGCACAC 57.145 29.630 0.00 0.00 0.00 3.82
1049 1066 3.194968 ACACCTAAGTCCTACGTCATTGG 59.805 47.826 0.00 0.00 0.00 3.16
1050 1067 3.446161 CACCTAAGTCCTACGTCATTGGA 59.554 47.826 0.00 0.00 0.00 3.53
1055 1072 7.070821 ACCTAAGTCCTACGTCATTGGATTTAT 59.929 37.037 0.00 0.00 35.12 1.40
1317 1606 6.093495 TGAAATTCTAGATACAAACAAGCGGG 59.907 38.462 0.00 0.00 0.00 6.13
1318 1607 2.901249 TCTAGATACAAACAAGCGGGC 58.099 47.619 0.00 0.00 0.00 6.13
1333 1622 2.612493 GGGCAAGTTGGGGCTAGGA 61.612 63.158 4.75 0.00 0.00 2.94
1661 1950 3.877357 TTTTGCACGCGCGACCAA 61.877 55.556 39.36 31.52 42.97 3.67
2056 2345 1.876497 AACAATGTGGACGGCATGGC 61.876 55.000 9.69 9.69 0.00 4.40
2200 2495 2.412112 GTACCGCAGCTACCCGAG 59.588 66.667 2.59 0.00 0.00 4.63
2337 2632 4.087892 CCTGCTCCCTCACCACCG 62.088 72.222 0.00 0.00 0.00 4.94
2339 2634 2.997315 TGCTCCCTCACCACCGAG 60.997 66.667 0.00 0.00 0.00 4.63
2439 2734 0.179124 GTGCGAGGACCTGATGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
2493 2788 2.122324 TCAAGGTTCGGTGGGGGA 60.122 61.111 0.00 0.00 0.00 4.81
2604 2902 2.049802 CCGTCTTGGTACGTGCGT 60.050 61.111 0.00 2.05 41.27 5.24
2625 2923 4.101790 CGCGCGCATGAACCCTTT 62.102 61.111 32.61 0.00 0.00 3.11
2626 2924 2.258286 GCGCGCATGAACCCTTTT 59.742 55.556 29.10 0.00 0.00 2.27
2627 2925 1.372872 GCGCGCATGAACCCTTTTT 60.373 52.632 29.10 0.00 0.00 1.94
2652 2950 4.517952 TTTTTGCGATGGATGAACATGT 57.482 36.364 0.00 0.00 0.00 3.21
2653 2951 4.517952 TTTTGCGATGGATGAACATGTT 57.482 36.364 11.78 11.78 0.00 2.71
2654 2952 3.490800 TTGCGATGGATGAACATGTTG 57.509 42.857 17.58 0.00 0.00 3.33
2655 2953 2.435422 TGCGATGGATGAACATGTTGT 58.565 42.857 17.58 4.11 0.00 3.32
2656 2954 2.819019 TGCGATGGATGAACATGTTGTT 59.181 40.909 17.58 2.33 44.37 2.83
2657 2955 3.255395 TGCGATGGATGAACATGTTGTTT 59.745 39.130 17.58 0.00 41.28 2.83
2658 2956 4.236935 GCGATGGATGAACATGTTGTTTT 58.763 39.130 17.58 0.00 41.28 2.43
2659 2957 4.090354 GCGATGGATGAACATGTTGTTTTG 59.910 41.667 17.58 0.00 41.28 2.44
2662 2960 6.088483 CGATGGATGAACATGTTGTTTTGAAG 59.912 38.462 17.58 0.00 41.28 3.02
2669 2967 8.296799 TGAACATGTTGTTTTGAAGATATTGC 57.703 30.769 17.58 0.00 41.28 3.56
2712 3015 8.551205 GTCAAAATCCCTTGAAACTGAAATTTC 58.449 33.333 11.41 11.41 37.08 2.17
2735 3061 1.878975 GAGGACTTTCGCCGCTAGC 60.879 63.158 4.06 4.06 38.52 3.42
2736 3062 2.125673 GGACTTTCGCCGCTAGCA 60.126 61.111 16.45 0.00 44.04 3.49
2738 3064 1.696832 GGACTTTCGCCGCTAGCAAG 61.697 60.000 16.45 12.48 44.04 4.01
2740 3066 0.245539 ACTTTCGCCGCTAGCAAGTA 59.754 50.000 16.45 0.00 44.04 2.24
2741 3067 1.337447 ACTTTCGCCGCTAGCAAGTAA 60.337 47.619 16.45 4.47 44.04 2.24
2742 3068 1.730064 CTTTCGCCGCTAGCAAGTAAA 59.270 47.619 16.45 8.58 44.04 2.01
2743 3069 1.355971 TTCGCCGCTAGCAAGTAAAG 58.644 50.000 16.45 0.00 44.04 1.85
2754 3111 8.086522 CCGCTAGCAAGTAAAGGAGTATTTATA 58.913 37.037 16.45 0.00 0.00 0.98
2755 3112 9.640963 CGCTAGCAAGTAAAGGAGTATTTATAT 57.359 33.333 16.45 0.00 0.00 0.86
2966 3344 3.691744 GAGGAGTGCAGCCTCGTCG 62.692 68.421 17.19 0.00 42.22 5.12
3151 3529 0.598065 AATGGACCAAACGCAAGCTC 59.402 50.000 0.00 0.00 45.62 4.09
3170 3548 0.388649 CACTCCACGAGAACGGAAGG 60.389 60.000 0.00 0.00 44.46 3.46
3184 3563 2.434702 ACGGAAGGGATAAGACATGACC 59.565 50.000 0.00 0.00 0.00 4.02
3203 3582 0.385473 CGAATTTTGAAGGCGTGCGT 60.385 50.000 0.00 0.00 0.00 5.24
3259 3644 3.157087 CACTTCATAGGCAAAAGGTGGT 58.843 45.455 0.00 0.00 0.00 4.16
3311 3698 0.453950 CGACCCGACTACACAGAACG 60.454 60.000 0.00 0.00 0.00 3.95
3314 3701 2.679837 GACCCGACTACACAGAACGATA 59.320 50.000 0.00 0.00 0.00 2.92
3316 3703 2.033049 CCCGACTACACAGAACGATAGG 59.967 54.545 0.00 0.00 43.77 2.57
3457 4644 6.163476 GGGTTTTGGGCTATTACTTTCTTTG 58.837 40.000 0.00 0.00 0.00 2.77
3459 4646 7.438564 GGTTTTGGGCTATTACTTTCTTTGAA 58.561 34.615 0.00 0.00 0.00 2.69
3511 4700 0.240145 GTAGTTTTGGGCCGAAGCAC 59.760 55.000 20.87 11.14 45.43 4.40
3513 4702 2.123683 TTTTGGGCCGAAGCACCA 60.124 55.556 6.27 0.00 44.14 4.17
3570 4780 5.897050 TGAAAACATGGTCAACCTAAACAC 58.103 37.500 0.00 0.00 36.82 3.32
3571 4781 4.561735 AAACATGGTCAACCTAAACACG 57.438 40.909 0.00 0.00 36.82 4.49
3580 4790 5.411669 GGTCAACCTAAACACGAAGATCAAT 59.588 40.000 0.00 0.00 0.00 2.57
3581 4791 6.592607 GGTCAACCTAAACACGAAGATCAATA 59.407 38.462 0.00 0.00 0.00 1.90
3599 4813 8.790718 AGATCAATATCTACATGCAACCAATTC 58.209 33.333 0.00 0.00 40.82 2.17
3692 4906 2.480224 TAACGCGTAGTACATGAGGC 57.520 50.000 14.46 0.00 0.00 4.70
3744 4958 1.383963 TGGGGGTGCCAACCTTTATA 58.616 50.000 0.00 0.00 46.70 0.98
3745 4959 1.006162 TGGGGGTGCCAACCTTTATAC 59.994 52.381 0.00 0.00 46.70 1.47
3746 4960 1.687054 GGGGGTGCCAACCTTTATACC 60.687 57.143 0.00 0.00 46.70 2.73
3747 4961 1.687054 GGGGTGCCAACCTTTATACCC 60.687 57.143 0.00 0.00 46.70 3.69
3748 4962 1.006162 GGGTGCCAACCTTTATACCCA 59.994 52.381 0.00 0.00 46.70 4.51
3749 4963 2.358826 GGGTGCCAACCTTTATACCCAT 60.359 50.000 0.00 0.00 46.70 4.00
3750 4964 3.117436 GGGTGCCAACCTTTATACCCATA 60.117 47.826 0.00 0.00 46.70 2.74
3751 4965 4.448640 GGGTGCCAACCTTTATACCCATAT 60.449 45.833 0.00 0.00 46.70 1.78
3752 4966 5.222171 GGGTGCCAACCTTTATACCCATATA 60.222 44.000 0.00 0.00 46.70 0.86
3753 4967 6.308566 GGTGCCAACCTTTATACCCATATAA 58.691 40.000 0.00 0.00 43.84 0.98
3754 4968 6.778559 GGTGCCAACCTTTATACCCATATAAA 59.221 38.462 0.00 0.00 43.84 1.40
3755 4969 7.288158 GGTGCCAACCTTTATACCCATATAAAA 59.712 37.037 2.18 0.00 40.91 1.52
3756 4970 8.697292 GTGCCAACCTTTATACCCATATAAAAA 58.303 33.333 2.18 0.00 40.91 1.94
3782 4996 9.807649 AAGATGTCATGTTTAGCATTTTAATCC 57.192 29.630 0.00 0.00 35.19 3.01
3783 4997 9.193806 AGATGTCATGTTTAGCATTTTAATCCT 57.806 29.630 0.00 0.00 35.19 3.24
3814 5028 8.223177 ACGCATAGATTAGACAAACTAGTAGT 57.777 34.615 0.00 0.00 32.30 2.73
3815 5029 9.334947 ACGCATAGATTAGACAAACTAGTAGTA 57.665 33.333 2.50 0.00 32.30 1.82
3816 5030 9.814507 CGCATAGATTAGACAAACTAGTAGTAG 57.185 37.037 2.50 2.87 32.30 2.57
3821 5035 9.978336 AGATTAGACAAACTAGTAGTAGGTCTT 57.022 33.333 27.99 18.12 40.19 3.01
3828 5042 9.850198 ACAAACTAGTAGTAGGTCTTATAGAGG 57.150 37.037 2.50 0.00 0.00 3.69
3858 5072 9.434275 AAAAATATGGTAAATCCTTCCCCTTAG 57.566 33.333 0.00 0.00 37.07 2.18
3859 5073 3.945640 TGGTAAATCCTTCCCCTTAGC 57.054 47.619 0.00 0.00 37.07 3.09
3860 5074 2.512476 TGGTAAATCCTTCCCCTTAGCC 59.488 50.000 0.00 0.00 37.07 3.93
3861 5075 2.486727 GGTAAATCCTTCCCCTTAGCCG 60.487 54.545 0.00 0.00 0.00 5.52
3862 5076 0.551396 AAATCCTTCCCCTTAGCCGG 59.449 55.000 0.00 0.00 0.00 6.13
3863 5077 1.996070 AATCCTTCCCCTTAGCCGGC 61.996 60.000 21.89 21.89 0.00 6.13
3864 5078 4.191015 CCTTCCCCTTAGCCGGCC 62.191 72.222 26.15 5.07 0.00 6.13
3865 5079 4.547367 CTTCCCCTTAGCCGGCCG 62.547 72.222 26.15 21.04 0.00 6.13
3869 5083 3.936203 CCCTTAGCCGGCCGCATA 61.936 66.667 26.15 11.89 41.38 3.14
3870 5084 2.357517 CCTTAGCCGGCCGCATAG 60.358 66.667 26.15 13.41 41.38 2.23
3871 5085 2.734591 CTTAGCCGGCCGCATAGA 59.265 61.111 26.15 2.70 41.38 1.98
3872 5086 1.293498 CTTAGCCGGCCGCATAGAT 59.707 57.895 26.15 7.49 41.38 1.98
3873 5087 0.320771 CTTAGCCGGCCGCATAGATT 60.321 55.000 26.15 2.97 41.38 2.40
3874 5088 0.970640 TTAGCCGGCCGCATAGATTA 59.029 50.000 26.15 1.76 41.38 1.75
3875 5089 0.530744 TAGCCGGCCGCATAGATTAG 59.469 55.000 26.15 3.31 41.38 1.73
3876 5090 1.185618 AGCCGGCCGCATAGATTAGA 61.186 55.000 26.15 0.00 41.38 2.10
3877 5091 1.014564 GCCGGCCGCATAGATTAGAC 61.015 60.000 22.85 0.00 37.47 2.59
3878 5092 0.317160 CCGGCCGCATAGATTAGACA 59.683 55.000 22.85 0.00 0.00 3.41
3879 5093 1.270094 CCGGCCGCATAGATTAGACAA 60.270 52.381 22.85 0.00 0.00 3.18
3880 5094 2.479837 CGGCCGCATAGATTAGACAAA 58.520 47.619 14.67 0.00 0.00 2.83
3881 5095 2.221055 CGGCCGCATAGATTAGACAAAC 59.779 50.000 14.67 0.00 0.00 2.93
3882 5096 3.467803 GGCCGCATAGATTAGACAAACT 58.532 45.455 0.00 0.00 0.00 2.66
3883 5097 4.628074 GGCCGCATAGATTAGACAAACTA 58.372 43.478 0.00 0.00 0.00 2.24
3884 5098 4.448060 GGCCGCATAGATTAGACAAACTAC 59.552 45.833 0.00 0.00 0.00 2.73
3885 5099 5.290386 GCCGCATAGATTAGACAAACTACT 58.710 41.667 0.00 0.00 0.00 2.57
3886 5100 6.444633 GCCGCATAGATTAGACAAACTACTA 58.555 40.000 0.00 0.00 0.00 1.82
3887 5101 6.583050 GCCGCATAGATTAGACAAACTACTAG 59.417 42.308 0.00 0.00 0.00 2.57
3888 5102 7.649973 CCGCATAGATTAGACAAACTACTAGT 58.350 38.462 0.00 0.00 0.00 2.57
3889 5103 8.781196 CCGCATAGATTAGACAAACTACTAGTA 58.219 37.037 1.89 1.89 0.00 1.82
3890 5104 9.814507 CGCATAGATTAGACAAACTACTAGTAG 57.185 37.037 25.30 25.30 39.04 2.57
3901 5115 9.492973 GACAAACTACTAGTAGGTCTATAGAGG 57.507 40.741 29.05 11.30 37.49 3.69
3902 5116 9.223291 ACAAACTACTAGTAGGTCTATAGAGGA 57.777 37.037 29.05 0.00 37.49 3.71
3929 5143 8.777578 AAAAAGTATATGGTAAATCCTTCCCC 57.222 34.615 0.00 0.00 37.07 4.81
3930 5144 7.723109 AAAGTATATGGTAAATCCTTCCCCT 57.277 36.000 0.00 0.00 37.07 4.79
3931 5145 7.723109 AAGTATATGGTAAATCCTTCCCCTT 57.277 36.000 0.00 0.00 37.07 3.95
3932 5146 8.823810 AAGTATATGGTAAATCCTTCCCCTTA 57.176 34.615 0.00 0.00 37.07 2.69
3933 5147 8.450780 AGTATATGGTAAATCCTTCCCCTTAG 57.549 38.462 0.00 0.00 37.07 2.18
3934 5148 3.945640 TGGTAAATCCTTCCCCTTAGC 57.054 47.619 0.00 0.00 37.07 3.09
3935 5149 2.512476 TGGTAAATCCTTCCCCTTAGCC 59.488 50.000 0.00 0.00 37.07 3.93
3936 5150 2.486727 GGTAAATCCTTCCCCTTAGCCG 60.487 54.545 0.00 0.00 0.00 5.52
3937 5151 0.551396 AAATCCTTCCCCTTAGCCGG 59.449 55.000 0.00 0.00 0.00 6.13
3938 5152 1.996070 AATCCTTCCCCTTAGCCGGC 61.996 60.000 21.89 21.89 0.00 6.13
3939 5153 4.191015 CCTTCCCCTTAGCCGGCC 62.191 72.222 26.15 5.07 0.00 6.13
3940 5154 4.547367 CTTCCCCTTAGCCGGCCG 62.547 72.222 26.15 21.04 0.00 6.13
3942 5156 4.872574 TCCCCTTAGCCGGCCGAT 62.873 66.667 30.73 17.92 0.00 4.18
3943 5157 4.315941 CCCCTTAGCCGGCCGATC 62.316 72.222 30.73 18.31 0.00 3.69
3944 5158 4.315941 CCCTTAGCCGGCCGATCC 62.316 72.222 30.73 14.76 0.00 3.36
3959 5173 2.662596 TCCGTGCTGGACATCCAC 59.337 61.111 0.00 0.00 43.74 4.02
3960 5174 2.436646 CCGTGCTGGACATCCACC 60.437 66.667 0.00 0.00 42.01 4.61
3961 5175 2.347114 CGTGCTGGACATCCACCA 59.653 61.111 0.00 0.00 42.01 4.17
3966 5180 2.662596 TGGACATCCACCAGACGC 59.337 61.111 0.00 0.00 42.01 5.19
3967 5181 2.509336 GGACATCCACCAGACGCG 60.509 66.667 3.53 3.53 35.64 6.01
3968 5182 3.188786 GACATCCACCAGACGCGC 61.189 66.667 5.73 0.00 0.00 6.86
3969 5183 3.649277 GACATCCACCAGACGCGCT 62.649 63.158 5.73 0.50 0.00 5.92
3970 5184 3.190849 CATCCACCAGACGCGCTG 61.191 66.667 19.36 19.36 44.49 5.18
3975 5189 4.609018 ACCAGACGCGCTGCTGTT 62.609 61.111 20.45 7.86 43.50 3.16
3976 5190 2.432456 CCAGACGCGCTGCTGTTA 60.432 61.111 20.45 0.00 43.50 2.41
3977 5191 2.447887 CCAGACGCGCTGCTGTTAG 61.448 63.158 20.45 6.47 43.50 2.34
3978 5192 1.444383 CAGACGCGCTGCTGTTAGA 60.444 57.895 5.73 0.00 37.90 2.10
3979 5193 0.803768 CAGACGCGCTGCTGTTAGAT 60.804 55.000 5.73 0.00 37.90 1.98
3980 5194 0.526524 AGACGCGCTGCTGTTAGATC 60.527 55.000 5.73 0.00 0.00 2.75
3981 5195 0.802222 GACGCGCTGCTGTTAGATCA 60.802 55.000 5.73 0.00 0.00 2.92
3982 5196 0.803768 ACGCGCTGCTGTTAGATCAG 60.804 55.000 5.73 0.00 38.35 2.90
3983 5197 0.526310 CGCGCTGCTGTTAGATCAGA 60.526 55.000 5.56 0.00 37.61 3.27
3984 5198 1.863267 GCGCTGCTGTTAGATCAGAT 58.137 50.000 0.00 0.00 37.61 2.90
3985 5199 1.791785 GCGCTGCTGTTAGATCAGATC 59.208 52.381 0.00 1.64 37.61 2.75
3986 5200 2.049959 CGCTGCTGTTAGATCAGATCG 58.950 52.381 4.67 0.00 37.61 3.69
3987 5201 2.287248 CGCTGCTGTTAGATCAGATCGA 60.287 50.000 4.67 0.00 37.61 3.59
3988 5202 3.611293 CGCTGCTGTTAGATCAGATCGAT 60.611 47.826 0.00 0.00 37.61 3.59
3999 5213 2.554142 TCAGATCGATCACATGGTTGC 58.446 47.619 26.47 0.00 0.00 4.17
4000 5214 1.600957 CAGATCGATCACATGGTTGCC 59.399 52.381 26.47 0.00 0.00 4.52
4001 5215 1.487976 AGATCGATCACATGGTTGCCT 59.512 47.619 26.47 0.00 0.00 4.75
4002 5216 1.869767 GATCGATCACATGGTTGCCTC 59.130 52.381 20.52 0.00 0.00 4.70
4003 5217 0.107703 TCGATCACATGGTTGCCTCC 60.108 55.000 0.00 0.00 0.00 4.30
4004 5218 0.107508 CGATCACATGGTTGCCTCCT 60.108 55.000 0.00 0.00 0.00 3.69
4005 5219 1.679944 CGATCACATGGTTGCCTCCTT 60.680 52.381 0.00 0.00 0.00 3.36
4006 5220 2.019984 GATCACATGGTTGCCTCCTTC 58.980 52.381 0.00 0.00 0.00 3.46
4007 5221 1.067295 TCACATGGTTGCCTCCTTCT 58.933 50.000 0.00 0.00 0.00 2.85
4008 5222 1.003580 TCACATGGTTGCCTCCTTCTC 59.996 52.381 0.00 0.00 0.00 2.87
4009 5223 1.004044 CACATGGTTGCCTCCTTCTCT 59.996 52.381 0.00 0.00 0.00 3.10
4010 5224 1.280421 ACATGGTTGCCTCCTTCTCTC 59.720 52.381 0.00 0.00 0.00 3.20
4011 5225 1.558756 CATGGTTGCCTCCTTCTCTCT 59.441 52.381 0.00 0.00 0.00 3.10
4012 5226 1.734655 TGGTTGCCTCCTTCTCTCTT 58.265 50.000 0.00 0.00 0.00 2.85
4013 5227 1.349026 TGGTTGCCTCCTTCTCTCTTG 59.651 52.381 0.00 0.00 0.00 3.02
4014 5228 1.339535 GGTTGCCTCCTTCTCTCTTGG 60.340 57.143 0.00 0.00 0.00 3.61
4015 5229 1.349357 GTTGCCTCCTTCTCTCTTGGT 59.651 52.381 0.00 0.00 0.00 3.67
4016 5230 1.270907 TGCCTCCTTCTCTCTTGGTC 58.729 55.000 0.00 0.00 0.00 4.02
4017 5231 0.539518 GCCTCCTTCTCTCTTGGTCC 59.460 60.000 0.00 0.00 0.00 4.46
4018 5232 1.199615 CCTCCTTCTCTCTTGGTCCC 58.800 60.000 0.00 0.00 0.00 4.46
4019 5233 1.553417 CCTCCTTCTCTCTTGGTCCCA 60.553 57.143 0.00 0.00 0.00 4.37
4020 5234 1.552792 CTCCTTCTCTCTTGGTCCCAC 59.447 57.143 0.00 0.00 0.00 4.61
4021 5235 1.132849 TCCTTCTCTCTTGGTCCCACA 60.133 52.381 0.00 0.00 0.00 4.17
4022 5236 1.002544 CCTTCTCTCTTGGTCCCACAC 59.997 57.143 0.00 0.00 0.00 3.82
4024 5238 0.836400 TCTCTCTTGGTCCCACACCC 60.836 60.000 0.00 0.00 46.18 4.61
4025 5239 0.838122 CTCTCTTGGTCCCACACCCT 60.838 60.000 0.00 0.00 46.18 4.34
4026 5240 0.836400 TCTCTTGGTCCCACACCCTC 60.836 60.000 0.00 0.00 46.18 4.30
4027 5241 0.838122 CTCTTGGTCCCACACCCTCT 60.838 60.000 0.00 0.00 46.18 3.69
4028 5242 0.836400 TCTTGGTCCCACACCCTCTC 60.836 60.000 0.00 0.00 46.18 3.20
4029 5243 0.838122 CTTGGTCCCACACCCTCTCT 60.838 60.000 0.00 0.00 46.18 3.10
4030 5244 0.836400 TTGGTCCCACACCCTCTCTC 60.836 60.000 0.00 0.00 46.18 3.20
4031 5245 1.990614 GGTCCCACACCCTCTCTCC 60.991 68.421 0.00 0.00 39.69 3.71
4032 5246 1.990614 GTCCCACACCCTCTCTCCC 60.991 68.421 0.00 0.00 0.00 4.30
4033 5247 2.177518 TCCCACACCCTCTCTCCCT 61.178 63.158 0.00 0.00 0.00 4.20
4034 5248 0.854039 TCCCACACCCTCTCTCCCTA 60.854 60.000 0.00 0.00 0.00 3.53
4035 5249 0.266152 CCCACACCCTCTCTCCCTAT 59.734 60.000 0.00 0.00 0.00 2.57
4036 5250 1.710816 CCACACCCTCTCTCCCTATC 58.289 60.000 0.00 0.00 0.00 2.08
4037 5251 1.219213 CCACACCCTCTCTCCCTATCT 59.781 57.143 0.00 0.00 0.00 1.98
4038 5252 2.315176 CACACCCTCTCTCCCTATCTG 58.685 57.143 0.00 0.00 0.00 2.90
4039 5253 1.219213 ACACCCTCTCTCCCTATCTGG 59.781 57.143 0.00 0.00 0.00 3.86
4040 5254 1.501170 CACCCTCTCTCCCTATCTGGA 59.499 57.143 0.00 0.00 38.35 3.86
4041 5255 2.091055 CACCCTCTCTCCCTATCTGGAA 60.091 54.545 0.00 0.00 38.35 3.53
4042 5256 2.592512 ACCCTCTCTCCCTATCTGGAAA 59.407 50.000 0.00 0.00 38.35 3.13
4043 5257 2.969262 CCCTCTCTCCCTATCTGGAAAC 59.031 54.545 0.00 0.00 38.35 2.78
4044 5258 3.631087 CCCTCTCTCCCTATCTGGAAACA 60.631 52.174 0.00 0.00 38.35 2.83
4045 5259 4.230455 CCTCTCTCCCTATCTGGAAACAT 58.770 47.826 0.00 0.00 41.51 2.71
4046 5260 4.283212 CCTCTCTCCCTATCTGGAAACATC 59.717 50.000 0.00 0.00 41.51 3.06
4047 5261 4.227197 TCTCTCCCTATCTGGAAACATCC 58.773 47.826 0.00 0.00 41.51 3.51
4048 5262 3.969976 CTCTCCCTATCTGGAAACATCCA 59.030 47.826 0.00 0.00 41.51 3.41
4049 5263 3.711704 TCTCCCTATCTGGAAACATCCAC 59.288 47.826 0.00 0.00 41.51 4.02
4050 5264 3.455910 CTCCCTATCTGGAAACATCCACA 59.544 47.826 0.00 0.00 41.51 4.17
4051 5265 3.849574 TCCCTATCTGGAAACATCCACAA 59.150 43.478 0.00 0.00 41.51 3.33
4052 5266 4.080356 TCCCTATCTGGAAACATCCACAAG 60.080 45.833 0.00 0.00 41.51 3.16
4053 5267 3.629398 CCTATCTGGAAACATCCACAAGC 59.371 47.826 0.00 0.00 41.51 4.01
4054 5268 2.655090 TCTGGAAACATCCACAAGCA 57.345 45.000 0.00 0.00 41.51 3.91
4055 5269 2.942804 TCTGGAAACATCCACAAGCAA 58.057 42.857 0.00 0.00 41.51 3.91
4056 5270 2.622942 TCTGGAAACATCCACAAGCAAC 59.377 45.455 0.00 0.00 41.51 4.17
4057 5271 2.361757 CTGGAAACATCCACAAGCAACA 59.638 45.455 0.00 0.00 41.51 3.33
4058 5272 2.361757 TGGAAACATCCACAAGCAACAG 59.638 45.455 0.00 0.00 34.33 3.16
4059 5273 2.362077 GGAAACATCCACAAGCAACAGT 59.638 45.455 0.00 0.00 0.00 3.55
4060 5274 3.374745 GAAACATCCACAAGCAACAGTG 58.625 45.455 0.00 0.00 35.56 3.66
4074 5288 3.402110 CAACAGTGCATACTTGTCCTCA 58.598 45.455 0.00 0.00 34.07 3.86
4075 5289 3.769739 ACAGTGCATACTTGTCCTCAA 57.230 42.857 0.00 0.00 34.07 3.02
4100 5314 6.237887 GATTGATTTTCAAATCCATCCCCA 57.762 37.500 12.36 0.00 43.19 4.96
4101 5315 6.639590 ATTGATTTTCAAATCCATCCCCAA 57.360 33.333 9.33 0.00 43.19 4.12
4102 5316 5.419239 TGATTTTCAAATCCATCCCCAAC 57.581 39.130 9.33 0.00 43.19 3.77
4103 5317 4.224818 TGATTTTCAAATCCATCCCCAACC 59.775 41.667 9.33 0.00 43.19 3.77
4104 5318 3.266477 TTTCAAATCCATCCCCAACCA 57.734 42.857 0.00 0.00 0.00 3.67
4105 5319 3.488355 TTCAAATCCATCCCCAACCAT 57.512 42.857 0.00 0.00 0.00 3.55
4106 5320 4.616671 TTCAAATCCATCCCCAACCATA 57.383 40.909 0.00 0.00 0.00 2.74
4107 5321 4.830717 TCAAATCCATCCCCAACCATAT 57.169 40.909 0.00 0.00 0.00 1.78
4108 5322 4.482030 TCAAATCCATCCCCAACCATATG 58.518 43.478 0.00 0.00 0.00 1.78
4109 5323 4.169658 TCAAATCCATCCCCAACCATATGA 59.830 41.667 3.65 0.00 0.00 2.15
4110 5324 3.814504 ATCCATCCCCAACCATATGAC 57.185 47.619 3.65 0.00 0.00 3.06
4111 5325 1.780309 TCCATCCCCAACCATATGACC 59.220 52.381 3.65 0.00 0.00 4.02
4112 5326 1.545428 CCATCCCCAACCATATGACCG 60.545 57.143 3.65 0.00 0.00 4.79
4113 5327 1.419762 CATCCCCAACCATATGACCGA 59.580 52.381 3.65 0.00 0.00 4.69
4114 5328 1.128200 TCCCCAACCATATGACCGAG 58.872 55.000 3.65 0.00 0.00 4.63
4115 5329 1.128200 CCCCAACCATATGACCGAGA 58.872 55.000 3.65 0.00 0.00 4.04
4116 5330 1.699634 CCCCAACCATATGACCGAGAT 59.300 52.381 3.65 0.00 0.00 2.75
4117 5331 2.903784 CCCCAACCATATGACCGAGATA 59.096 50.000 3.65 0.00 0.00 1.98
4118 5332 3.055819 CCCCAACCATATGACCGAGATAG 60.056 52.174 3.65 0.00 0.00 2.08
4119 5333 3.589988 CCAACCATATGACCGAGATAGC 58.410 50.000 3.65 0.00 0.00 2.97
4120 5334 3.589988 CAACCATATGACCGAGATAGCC 58.410 50.000 3.65 0.00 0.00 3.93
4121 5335 3.176924 ACCATATGACCGAGATAGCCT 57.823 47.619 3.65 0.00 0.00 4.58
4122 5336 3.511477 ACCATATGACCGAGATAGCCTT 58.489 45.455 3.65 0.00 0.00 4.35
4123 5337 3.259374 ACCATATGACCGAGATAGCCTTG 59.741 47.826 3.65 0.00 0.00 3.61
4124 5338 3.259374 CCATATGACCGAGATAGCCTTGT 59.741 47.826 3.65 0.00 0.00 3.16
4125 5339 4.489810 CATATGACCGAGATAGCCTTGTC 58.510 47.826 0.00 0.00 0.00 3.18
4126 5340 1.847328 TGACCGAGATAGCCTTGTCA 58.153 50.000 0.00 0.00 35.76 3.58
4127 5341 2.176045 TGACCGAGATAGCCTTGTCAA 58.824 47.619 0.00 0.00 35.44 3.18
4128 5342 2.166459 TGACCGAGATAGCCTTGTCAAG 59.834 50.000 5.53 5.53 35.44 3.02
4155 5369 7.489574 AGGATTCGAAGAATCTTTATTCAGC 57.510 36.000 18.54 3.36 45.90 4.26
4156 5370 6.201806 AGGATTCGAAGAATCTTTATTCAGCG 59.798 38.462 18.54 0.00 45.90 5.18
4157 5371 6.018669 GGATTCGAAGAATCTTTATTCAGCGT 60.019 38.462 18.54 0.00 45.90 5.07
4158 5372 5.950965 TCGAAGAATCTTTATTCAGCGTC 57.049 39.130 0.00 0.00 43.44 5.19
4159 5373 5.407502 TCGAAGAATCTTTATTCAGCGTCA 58.592 37.500 0.00 0.00 43.44 4.35
4160 5374 6.042777 TCGAAGAATCTTTATTCAGCGTCAT 58.957 36.000 0.00 0.00 43.44 3.06
4161 5375 6.199154 TCGAAGAATCTTTATTCAGCGTCATC 59.801 38.462 0.00 0.00 43.44 2.92
4162 5376 6.019559 CGAAGAATCTTTATTCAGCGTCATCA 60.020 38.462 0.00 0.00 43.44 3.07
4163 5377 7.307042 CGAAGAATCTTTATTCAGCGTCATCAT 60.307 37.037 0.00 0.00 43.44 2.45
4164 5378 7.418840 AGAATCTTTATTCAGCGTCATCATC 57.581 36.000 1.35 0.00 43.44 2.92
4165 5379 5.835911 ATCTTTATTCAGCGTCATCATCG 57.164 39.130 0.00 0.00 0.00 3.84
4166 5380 4.682787 TCTTTATTCAGCGTCATCATCGT 58.317 39.130 0.00 0.00 0.00 3.73
4167 5381 4.740205 TCTTTATTCAGCGTCATCATCGTC 59.260 41.667 0.00 0.00 0.00 4.20
4168 5382 2.584492 ATTCAGCGTCATCATCGTCA 57.416 45.000 0.00 0.00 0.00 4.35
4169 5383 1.629013 TTCAGCGTCATCATCGTCAC 58.371 50.000 0.00 0.00 0.00 3.67
4170 5384 0.179137 TCAGCGTCATCATCGTCACC 60.179 55.000 0.00 0.00 0.00 4.02
4171 5385 1.226688 AGCGTCATCATCGTCACCG 60.227 57.895 0.00 0.00 0.00 4.94
4172 5386 2.860628 GCGTCATCATCGTCACCGC 61.861 63.158 0.00 0.00 0.00 5.68
4173 5387 2.230940 CGTCATCATCGTCACCGCC 61.231 63.158 0.00 0.00 0.00 6.13
4174 5388 2.104132 TCATCATCGTCACCGCCG 59.896 61.111 0.00 0.00 0.00 6.46
4175 5389 2.104132 CATCATCGTCACCGCCGA 59.896 61.111 0.00 0.00 38.89 5.54
4176 5390 1.518352 CATCATCGTCACCGCCGAA 60.518 57.895 0.00 0.00 37.93 4.30
4177 5391 1.226974 ATCATCGTCACCGCCGAAG 60.227 57.895 0.00 0.00 37.93 3.79
4178 5392 3.554692 CATCGTCACCGCCGAAGC 61.555 66.667 0.00 0.00 37.93 3.86
4179 5393 3.760035 ATCGTCACCGCCGAAGCT 61.760 61.111 0.00 0.00 37.93 3.74
4180 5394 2.412323 ATCGTCACCGCCGAAGCTA 61.412 57.895 0.00 0.00 37.93 3.32
4181 5395 1.940883 ATCGTCACCGCCGAAGCTAA 61.941 55.000 0.00 0.00 37.93 3.09
4182 5396 2.158959 CGTCACCGCCGAAGCTAAG 61.159 63.158 0.00 0.00 36.60 2.18
4183 5397 1.214589 GTCACCGCCGAAGCTAAGA 59.785 57.895 0.00 0.00 36.60 2.10
4184 5398 1.077089 GTCACCGCCGAAGCTAAGAC 61.077 60.000 0.00 0.00 36.60 3.01
4185 5399 2.158959 CACCGCCGAAGCTAAGACG 61.159 63.158 0.00 0.00 36.60 4.18
4186 5400 2.338015 ACCGCCGAAGCTAAGACGA 61.338 57.895 0.00 0.00 36.60 4.20
4187 5401 1.065928 CCGCCGAAGCTAAGACGAT 59.934 57.895 0.00 0.00 36.60 3.73
4188 5402 1.209275 CCGCCGAAGCTAAGACGATG 61.209 60.000 0.00 0.00 36.60 3.84
4189 5403 0.248498 CGCCGAAGCTAAGACGATGA 60.248 55.000 0.00 0.00 36.60 2.92
4190 5404 1.797713 CGCCGAAGCTAAGACGATGAA 60.798 52.381 0.00 0.00 36.60 2.57
4191 5405 1.588861 GCCGAAGCTAAGACGATGAAC 59.411 52.381 0.00 0.00 35.50 3.18
4192 5406 2.876091 CCGAAGCTAAGACGATGAACA 58.124 47.619 0.00 0.00 0.00 3.18
4193 5407 2.854777 CCGAAGCTAAGACGATGAACAG 59.145 50.000 0.00 0.00 0.00 3.16
4194 5408 2.280183 CGAAGCTAAGACGATGAACAGC 59.720 50.000 0.00 0.00 0.00 4.40
4195 5409 2.301577 AGCTAAGACGATGAACAGCC 57.698 50.000 0.00 0.00 0.00 4.85
4196 5410 1.827969 AGCTAAGACGATGAACAGCCT 59.172 47.619 0.00 0.00 0.00 4.58
4197 5411 3.024547 AGCTAAGACGATGAACAGCCTA 58.975 45.455 0.00 0.00 0.00 3.93
4198 5412 3.447586 AGCTAAGACGATGAACAGCCTAA 59.552 43.478 0.00 0.00 0.00 2.69
4199 5413 4.081642 AGCTAAGACGATGAACAGCCTAAA 60.082 41.667 0.00 0.00 0.00 1.85
4200 5414 4.630069 GCTAAGACGATGAACAGCCTAAAA 59.370 41.667 0.00 0.00 0.00 1.52
4201 5415 5.121768 GCTAAGACGATGAACAGCCTAAAAA 59.878 40.000 0.00 0.00 0.00 1.94
4202 5416 5.358298 AAGACGATGAACAGCCTAAAAAC 57.642 39.130 0.00 0.00 0.00 2.43
4203 5417 3.751698 AGACGATGAACAGCCTAAAAACC 59.248 43.478 0.00 0.00 0.00 3.27
4204 5418 3.751518 ACGATGAACAGCCTAAAAACCT 58.248 40.909 0.00 0.00 0.00 3.50
4205 5419 4.901868 ACGATGAACAGCCTAAAAACCTA 58.098 39.130 0.00 0.00 0.00 3.08
4206 5420 4.935808 ACGATGAACAGCCTAAAAACCTAG 59.064 41.667 0.00 0.00 0.00 3.02
4207 5421 5.175859 CGATGAACAGCCTAAAAACCTAGA 58.824 41.667 0.00 0.00 0.00 2.43
4208 5422 5.817816 CGATGAACAGCCTAAAAACCTAGAT 59.182 40.000 0.00 0.00 0.00 1.98
4209 5423 6.316390 CGATGAACAGCCTAAAAACCTAGATT 59.684 38.462 0.00 0.00 0.00 2.40
4210 5424 7.494625 CGATGAACAGCCTAAAAACCTAGATTA 59.505 37.037 0.00 0.00 0.00 1.75
4211 5425 7.916914 TGAACAGCCTAAAAACCTAGATTAC 57.083 36.000 0.00 0.00 0.00 1.89
4212 5426 6.592607 TGAACAGCCTAAAAACCTAGATTACG 59.407 38.462 0.00 0.00 0.00 3.18
4213 5427 6.290294 ACAGCCTAAAAACCTAGATTACGA 57.710 37.500 0.00 0.00 0.00 3.43
4214 5428 6.338937 ACAGCCTAAAAACCTAGATTACGAG 58.661 40.000 0.00 0.00 0.00 4.18
4215 5429 6.154021 ACAGCCTAAAAACCTAGATTACGAGA 59.846 38.462 0.00 0.00 0.00 4.04
4216 5430 6.697892 CAGCCTAAAAACCTAGATTACGAGAG 59.302 42.308 0.00 0.00 0.00 3.20
4217 5431 6.606395 AGCCTAAAAACCTAGATTACGAGAGA 59.394 38.462 0.00 0.00 0.00 3.10
4218 5432 7.123847 AGCCTAAAAACCTAGATTACGAGAGAA 59.876 37.037 0.00 0.00 0.00 2.87
4219 5433 7.927092 GCCTAAAAACCTAGATTACGAGAGAAT 59.073 37.037 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.835701 CTTCGCTCTTAGTGCCGGCA 62.836 60.000 29.03 29.03 0.00 5.69
32 33 0.309922 TATTAGCGAGTTCCCGAGCG 59.690 55.000 0.00 0.00 34.34 5.03
78 79 1.826340 TTGGCCTAACTCTCGCTGCA 61.826 55.000 3.32 0.00 0.00 4.41
80 81 0.741221 GGTTGGCCTAACTCTCGCTG 60.741 60.000 3.32 0.00 39.31 5.18
121 122 0.545646 GGAAGGCTCTTGGATGCTCT 59.454 55.000 0.00 0.00 0.00 4.09
130 131 0.178873 TGTAGGGGTGGAAGGCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
150 151 3.071837 TCGTGTAGGCGGCATGGA 61.072 61.111 13.08 0.00 0.00 3.41
151 152 2.890474 GTCGTGTAGGCGGCATGG 60.890 66.667 13.08 0.00 36.38 3.66
161 162 2.165167 CCTACACCTCTTGGTCGTGTA 58.835 52.381 0.00 0.00 46.60 2.90
206 207 0.379669 GATCCATGGTGCGCTTTCTG 59.620 55.000 12.58 1.01 0.00 3.02
213 214 2.903855 GGCAGGATCCATGGTGCG 60.904 66.667 15.82 3.10 36.76 5.34
214 215 1.152610 ATGGCAGGATCCATGGTGC 60.153 57.895 15.82 14.71 44.72 5.01
244 245 2.191641 GTCAGAGGATGCCAGGGC 59.808 66.667 2.62 2.62 42.35 5.19
248 253 0.328926 TGCATTGTCAGAGGATGCCA 59.671 50.000 13.02 2.45 44.15 4.92
264 269 2.860735 GTGTTTTGGCGTTTGTATTGCA 59.139 40.909 0.00 0.00 0.00 4.08
265 270 2.097637 CGTGTTTTGGCGTTTGTATTGC 60.098 45.455 0.00 0.00 0.00 3.56
311 316 2.363147 AGGTCGAGGTGGAGGCTC 60.363 66.667 5.78 5.78 0.00 4.70
332 337 1.671328 CGCATGTCTCGTCCTTCTCTA 59.329 52.381 0.00 0.00 0.00 2.43
377 382 2.603473 GGTTTGACTTGGGCCCCC 60.603 66.667 22.27 6.49 0.00 5.40
438 443 2.511600 CGCCCGGCTAAACTCCTG 60.512 66.667 8.05 0.00 0.00 3.86
472 478 9.444600 AGTTTAAGTGACTGTAAAAACTCTTGA 57.555 29.630 8.77 0.00 33.17 3.02
475 481 9.227777 ACAAGTTTAAGTGACTGTAAAAACTCT 57.772 29.630 12.78 5.06 36.45 3.24
487 493 6.224420 ACTCGCAATACAAGTTTAAGTGAC 57.776 37.500 0.00 0.00 0.00 3.67
493 499 5.753744 CAACCAACTCGCAATACAAGTTTA 58.246 37.500 0.00 0.00 31.04 2.01
513 519 2.093711 ACACCCTTGTTTTTCAGGCAAC 60.094 45.455 0.00 0.00 28.43 4.17
525 531 4.725490 AGTATTGCAGTAAACACCCTTGT 58.275 39.130 0.00 0.00 37.67 3.16
527 533 9.523168 TTATAAAGTATTGCAGTAAACACCCTT 57.477 29.630 0.00 0.00 0.00 3.95
543 549 4.405116 TTGCCCGTCCGTTATAAAGTAT 57.595 40.909 0.00 0.00 0.00 2.12
564 570 7.123247 AGCCAAGATGAATGTAACTATTGCTTT 59.877 33.333 0.00 0.00 0.00 3.51
573 579 7.989826 ACAATAGAAGCCAAGATGAATGTAAC 58.010 34.615 0.00 0.00 0.00 2.50
609 615 4.430765 TTTCCGGCCGCGTCTCTC 62.431 66.667 22.85 0.00 0.00 3.20
610 616 4.436998 CTTTCCGGCCGCGTCTCT 62.437 66.667 22.85 0.00 0.00 3.10
613 619 1.085501 TTTATCTTTCCGGCCGCGTC 61.086 55.000 22.85 0.00 0.00 5.19
618 624 4.580580 AGAACATCATTTATCTTTCCGGCC 59.419 41.667 0.00 0.00 0.00 6.13
621 627 8.454106 AGTTGAAGAACATCATTTATCTTTCCG 58.546 33.333 0.00 0.00 34.17 4.30
810 816 7.831753 TCAACAGTGAAAATTAAAACAGACCA 58.168 30.769 0.00 0.00 0.00 4.02
830 836 9.802039 AGTACACCCTCTTTAATTAAATCAACA 57.198 29.630 10.97 0.00 0.00 3.33
843 849 1.002087 CCGCTTCAGTACACCCTCTTT 59.998 52.381 0.00 0.00 0.00 2.52
1030 1047 4.939052 ATCCAATGACGTAGGACTTAGG 57.061 45.455 0.00 0.00 33.57 2.69
1049 1066 6.017934 TGCTTGGACGAATCTTAGCATAAATC 60.018 38.462 0.00 0.00 36.76 2.17
1050 1067 5.822519 TGCTTGGACGAATCTTAGCATAAAT 59.177 36.000 0.00 0.00 36.76 1.40
1055 1072 2.760634 TGCTTGGACGAATCTTAGCA 57.239 45.000 0.00 0.00 38.23 3.49
1098 1116 9.970395 TCTAAGTAACACGATCAAGTTAGAAAA 57.030 29.630 7.11 0.00 33.22 2.29
1106 1124 5.576774 TGCACATCTAAGTAACACGATCAAG 59.423 40.000 0.00 0.00 0.00 3.02
1138 1156 0.613260 GGGTCTGTCTACATGTGCCA 59.387 55.000 9.11 1.15 0.00 4.92
1146 1164 9.614792 ATTCAAATTTACTATGGGTCTGTCTAC 57.385 33.333 0.00 0.00 0.00 2.59
1155 1173 8.525290 AGGTCTCAATTCAAATTTACTATGGG 57.475 34.615 0.00 0.00 0.00 4.00
1317 1606 1.750780 GCTCCTAGCCCCAACTTGC 60.751 63.158 0.00 0.00 34.48 4.01
1318 1607 0.678048 GTGCTCCTAGCCCCAACTTG 60.678 60.000 0.00 0.00 41.51 3.16
1442 1731 3.793888 GGGGTGGGTAGGAAGCCG 61.794 72.222 0.00 0.00 46.91 5.52
1661 1950 2.125106 GCCTTGCCGACTCCGATT 60.125 61.111 0.00 0.00 38.22 3.34
2023 2312 2.172483 ATTGTTGAGGTCGAGCGCCT 62.172 55.000 15.76 4.15 39.42 5.52
2285 2580 3.179830 CATCGTGTAAGGGAAGTCGAAG 58.820 50.000 0.00 0.00 0.00 3.79
2337 2632 2.267324 GTCCAGCTCCAGGTGCTC 59.733 66.667 13.39 0.00 41.81 4.26
2339 2634 3.325753 AGGTCCAGCTCCAGGTGC 61.326 66.667 5.25 5.25 41.81 5.01
2416 2711 3.362399 ATCAGGTCCTCGCACGCAG 62.362 63.158 0.00 0.00 0.00 5.18
2417 2712 3.381983 ATCAGGTCCTCGCACGCA 61.382 61.111 0.00 0.00 0.00 5.24
2418 2713 2.887568 CATCAGGTCCTCGCACGC 60.888 66.667 0.00 0.00 0.00 5.34
2456 2751 2.430921 GAGAGCACGGTGACACGG 60.431 66.667 13.29 11.29 38.39 4.94
2493 2788 4.752879 CCCGACGTCGCCACCAAT 62.753 66.667 31.73 0.00 38.18 3.16
2566 2864 1.946475 GAGACAGTACGGGGCTGGTC 61.946 65.000 0.27 0.00 38.22 4.02
2609 2907 1.372872 AAAAAGGGTTCATGCGCGC 60.373 52.632 27.26 27.26 0.00 6.86
2610 2908 4.963815 AAAAAGGGTTCATGCGCG 57.036 50.000 0.00 0.00 0.00 6.86
2633 2931 3.255395 ACAACATGTTCATCCATCGCAAA 59.745 39.130 8.48 0.00 0.00 3.68
2635 2933 2.435422 ACAACATGTTCATCCATCGCA 58.565 42.857 8.48 0.00 0.00 5.10
2636 2934 3.492421 AACAACATGTTCATCCATCGC 57.508 42.857 8.48 0.00 35.27 4.58
2637 2935 5.459768 TCAAAACAACATGTTCATCCATCG 58.540 37.500 8.48 0.00 40.14 3.84
2638 2936 7.147312 TCTTCAAAACAACATGTTCATCCATC 58.853 34.615 8.48 0.00 40.14 3.51
2639 2937 7.053316 TCTTCAAAACAACATGTTCATCCAT 57.947 32.000 8.48 0.00 40.14 3.41
2640 2938 6.462552 TCTTCAAAACAACATGTTCATCCA 57.537 33.333 8.48 0.00 40.14 3.41
2641 2939 9.643693 AATATCTTCAAAACAACATGTTCATCC 57.356 29.630 8.48 0.00 40.14 3.51
2643 2941 8.928733 GCAATATCTTCAAAACAACATGTTCAT 58.071 29.630 8.48 0.00 40.14 2.57
2644 2942 8.143193 AGCAATATCTTCAAAACAACATGTTCA 58.857 29.630 8.48 0.00 40.14 3.18
2645 2943 8.524870 AGCAATATCTTCAAAACAACATGTTC 57.475 30.769 8.48 0.00 40.14 3.18
2646 2944 8.891671 AAGCAATATCTTCAAAACAACATGTT 57.108 26.923 4.92 4.92 43.41 2.71
2647 2945 8.891671 AAAGCAATATCTTCAAAACAACATGT 57.108 26.923 0.00 0.00 0.00 3.21
2679 2977 9.492973 CAGTTTCAAGGGATTTTGACAATAAAT 57.507 29.630 0.00 0.00 36.84 1.40
2680 2978 8.700051 TCAGTTTCAAGGGATTTTGACAATAAA 58.300 29.630 0.00 0.00 36.84 1.40
2681 2979 8.243961 TCAGTTTCAAGGGATTTTGACAATAA 57.756 30.769 0.00 0.00 36.84 1.40
2682 2980 7.831691 TCAGTTTCAAGGGATTTTGACAATA 57.168 32.000 0.00 0.00 36.84 1.90
2684 2982 6.537453 TTCAGTTTCAAGGGATTTTGACAA 57.463 33.333 0.00 0.00 36.84 3.18
2685 2983 6.537453 TTTCAGTTTCAAGGGATTTTGACA 57.463 33.333 0.00 0.00 36.84 3.58
2686 2984 8.437360 AAATTTCAGTTTCAAGGGATTTTGAC 57.563 30.769 0.00 0.00 36.84 3.18
2687 2985 7.714813 GGAAATTTCAGTTTCAAGGGATTTTGA 59.285 33.333 19.49 0.00 39.33 2.69
2689 2987 7.498900 GTGGAAATTTCAGTTTCAAGGGATTTT 59.501 33.333 19.49 0.00 39.33 1.82
2691 2989 6.327365 AGTGGAAATTTCAGTTTCAAGGGATT 59.673 34.615 19.49 0.00 39.33 3.01
2693 2991 5.068987 CAGTGGAAATTTCAGTTTCAAGGGA 59.931 40.000 19.49 0.00 39.33 4.20
2695 2993 6.147864 TCAGTGGAAATTTCAGTTTCAAGG 57.852 37.500 19.49 4.44 39.33 3.61
2712 3015 1.738099 CGGCGAAAGTCCTCAGTGG 60.738 63.158 0.00 0.00 37.10 4.00
2721 3047 0.245539 TACTTGCTAGCGGCGAAAGT 59.754 50.000 12.98 18.15 45.43 2.66
2722 3048 1.355971 TTACTTGCTAGCGGCGAAAG 58.644 50.000 12.98 10.05 45.43 2.62
2769 3126 7.854557 ATCATGCACATATGACATATACCAC 57.145 36.000 10.38 0.02 39.68 4.16
2780 3137 9.908152 AAGAATATCACAAATCATGCACATATG 57.092 29.630 0.00 0.00 0.00 1.78
2785 3160 8.692110 TGAAAAGAATATCACAAATCATGCAC 57.308 30.769 0.00 0.00 0.00 4.57
2808 3183 0.824109 CCCCTGCTTACACGAGATGA 59.176 55.000 0.00 0.00 0.00 2.92
2966 3344 1.376037 CGGTCCCAAGCAGAACCTC 60.376 63.158 0.00 0.00 0.00 3.85
3014 3392 0.666577 GCTGTAGCGTCGTGAAACCT 60.667 55.000 0.00 0.00 0.00 3.50
3151 3529 0.388649 CCTTCCGTTCTCGTGGAGTG 60.389 60.000 0.00 0.00 35.26 3.51
3170 3548 6.677781 TCAAAATTCGGTCATGTCTTATCC 57.322 37.500 0.00 0.00 0.00 2.59
3184 3563 0.385473 ACGCACGCCTTCAAAATTCG 60.385 50.000 0.00 0.00 0.00 3.34
3220 3599 7.759489 TGAAGTGGTATCAGCTAACAATTTT 57.241 32.000 0.00 0.00 35.56 1.82
3300 3687 1.404391 ACCGCCTATCGTTCTGTGTAG 59.596 52.381 0.00 0.00 36.19 2.74
3377 4563 2.776659 GGTCGCCCCTGTCAATAAC 58.223 57.895 0.00 0.00 0.00 1.89
3428 4615 5.932619 AGTAATAGCCCAAAACCCATTTC 57.067 39.130 0.00 0.00 0.00 2.17
3487 4676 3.380320 GCTTCGGCCCAAAACTACAATAT 59.620 43.478 0.00 0.00 34.32 1.28
3488 4677 2.750712 GCTTCGGCCCAAAACTACAATA 59.249 45.455 0.00 0.00 34.32 1.90
3489 4678 1.544246 GCTTCGGCCCAAAACTACAAT 59.456 47.619 0.00 0.00 34.32 2.71
3511 4700 4.645809 GCCTGGGCTTTAGTCTGG 57.354 61.111 4.12 0.00 38.26 3.86
3570 4780 6.424812 TGGTTGCATGTAGATATTGATCTTCG 59.575 38.462 0.00 0.00 39.56 3.79
3571 4781 7.734924 TGGTTGCATGTAGATATTGATCTTC 57.265 36.000 0.00 0.00 39.56 2.87
3580 4790 4.195416 TGCGAATTGGTTGCATGTAGATA 58.805 39.130 0.00 0.00 32.86 1.98
3581 4791 3.016031 TGCGAATTGGTTGCATGTAGAT 58.984 40.909 0.00 0.00 32.86 1.98
3599 4813 9.483062 TTGTTTTGTTTATCTCAAAATTTTGCG 57.517 25.926 23.36 18.47 43.41 4.85
3664 4878 4.362279 TGTACTACGCGTTATTGGAATCC 58.638 43.478 20.78 0.00 0.00 3.01
3665 4879 5.688621 TCATGTACTACGCGTTATTGGAATC 59.311 40.000 20.78 0.00 0.00 2.52
3667 4881 4.996344 TCATGTACTACGCGTTATTGGAA 58.004 39.130 20.78 0.00 0.00 3.53
3731 4945 8.840200 TTTTTATATGGGTATAAAGGTTGGCA 57.160 30.769 0.00 0.00 41.39 4.92
3756 4970 9.807649 GGATTAAAATGCTAAACATGACATCTT 57.192 29.630 0.00 0.00 39.60 2.40
3757 4971 9.193806 AGGATTAAAATGCTAAACATGACATCT 57.806 29.630 0.00 0.00 39.60 2.90
3788 5002 9.334947 ACTACTAGTTTGTCTAATCTATGCGTA 57.665 33.333 0.00 0.00 0.00 4.42
3789 5003 8.223177 ACTACTAGTTTGTCTAATCTATGCGT 57.777 34.615 0.00 0.00 0.00 5.24
3790 5004 9.814507 CTACTACTAGTTTGTCTAATCTATGCG 57.185 37.037 0.00 0.00 0.00 4.73
3795 5009 9.978336 AAGACCTACTACTAGTTTGTCTAATCT 57.022 33.333 15.46 0.88 37.08 2.40
3802 5016 9.850198 CCTCTATAAGACCTACTACTAGTTTGT 57.150 37.037 0.00 3.49 0.00 2.83
3832 5046 9.434275 CTAAGGGGAAGGATTTACCATATTTTT 57.566 33.333 0.00 0.00 42.04 1.94
3833 5047 7.509318 GCTAAGGGGAAGGATTTACCATATTTT 59.491 37.037 0.00 0.00 42.04 1.82
3834 5048 7.010771 GCTAAGGGGAAGGATTTACCATATTT 58.989 38.462 0.00 0.00 42.04 1.40
3835 5049 6.468798 GGCTAAGGGGAAGGATTTACCATATT 60.469 42.308 0.00 0.00 42.04 1.28
3836 5050 5.015284 GGCTAAGGGGAAGGATTTACCATAT 59.985 44.000 0.00 0.00 42.04 1.78
3837 5051 4.352893 GGCTAAGGGGAAGGATTTACCATA 59.647 45.833 0.00 0.00 42.04 2.74
3838 5052 3.140332 GGCTAAGGGGAAGGATTTACCAT 59.860 47.826 0.00 0.00 42.04 3.55
3839 5053 2.512476 GGCTAAGGGGAAGGATTTACCA 59.488 50.000 0.00 0.00 42.04 3.25
3840 5054 2.486727 CGGCTAAGGGGAAGGATTTACC 60.487 54.545 0.00 0.00 39.35 2.85
3841 5055 2.486727 CCGGCTAAGGGGAAGGATTTAC 60.487 54.545 0.00 0.00 0.00 2.01
3842 5056 1.772453 CCGGCTAAGGGGAAGGATTTA 59.228 52.381 0.00 0.00 0.00 1.40
3843 5057 0.551396 CCGGCTAAGGGGAAGGATTT 59.449 55.000 0.00 0.00 0.00 2.17
3844 5058 1.996070 GCCGGCTAAGGGGAAGGATT 61.996 60.000 22.15 0.00 0.00 3.01
3845 5059 2.452937 GCCGGCTAAGGGGAAGGAT 61.453 63.158 22.15 0.00 0.00 3.24
3846 5060 3.087906 GCCGGCTAAGGGGAAGGA 61.088 66.667 22.15 0.00 0.00 3.36
3847 5061 4.191015 GGCCGGCTAAGGGGAAGG 62.191 72.222 28.56 0.00 0.00 3.46
3848 5062 4.547367 CGGCCGGCTAAGGGGAAG 62.547 72.222 28.56 2.86 0.00 3.46
3852 5066 3.883744 CTATGCGGCCGGCTAAGGG 62.884 68.421 29.38 11.75 44.05 3.95
3853 5067 2.172483 ATCTATGCGGCCGGCTAAGG 62.172 60.000 29.38 14.37 44.05 2.69
3854 5068 0.320771 AATCTATGCGGCCGGCTAAG 60.321 55.000 29.38 18.88 44.05 2.18
3855 5069 0.970640 TAATCTATGCGGCCGGCTAA 59.029 50.000 29.38 12.80 44.05 3.09
3856 5070 0.530744 CTAATCTATGCGGCCGGCTA 59.469 55.000 29.38 13.87 44.05 3.93
3857 5071 1.185618 TCTAATCTATGCGGCCGGCT 61.186 55.000 29.38 9.11 44.05 5.52
3858 5072 1.014564 GTCTAATCTATGCGGCCGGC 61.015 60.000 29.38 21.18 43.96 6.13
3859 5073 0.317160 TGTCTAATCTATGCGGCCGG 59.683 55.000 29.38 10.44 0.00 6.13
3860 5074 2.148916 TTGTCTAATCTATGCGGCCG 57.851 50.000 24.05 24.05 0.00 6.13
3861 5075 3.467803 AGTTTGTCTAATCTATGCGGCC 58.532 45.455 0.00 0.00 0.00 6.13
3862 5076 5.290386 AGTAGTTTGTCTAATCTATGCGGC 58.710 41.667 0.00 0.00 0.00 6.53
3863 5077 7.649973 ACTAGTAGTTTGTCTAATCTATGCGG 58.350 38.462 0.00 0.00 0.00 5.69
3864 5078 9.814507 CTACTAGTAGTTTGTCTAATCTATGCG 57.185 37.037 20.01 0.00 0.00 4.73
3875 5089 9.492973 CCTCTATAGACCTACTAGTAGTTTGTC 57.507 40.741 24.84 22.79 34.35 3.18
3876 5090 9.223291 TCCTCTATAGACCTACTAGTAGTTTGT 57.777 37.037 24.84 17.00 34.35 2.83
3904 5118 8.574853 AGGGGAAGGATTTACCATATACTTTTT 58.425 33.333 0.00 0.00 42.04 1.94
3905 5119 8.126241 AGGGGAAGGATTTACCATATACTTTT 57.874 34.615 0.00 0.00 42.04 2.27
3906 5120 7.723109 AGGGGAAGGATTTACCATATACTTT 57.277 36.000 0.00 0.00 42.04 2.66
3907 5121 7.723109 AAGGGGAAGGATTTACCATATACTT 57.277 36.000 0.00 0.00 42.04 2.24
3908 5122 7.037514 GCTAAGGGGAAGGATTTACCATATACT 60.038 40.741 0.00 0.00 42.04 2.12
3909 5123 7.110810 GCTAAGGGGAAGGATTTACCATATAC 58.889 42.308 0.00 0.00 42.04 1.47
3910 5124 6.216868 GGCTAAGGGGAAGGATTTACCATATA 59.783 42.308 0.00 0.00 42.04 0.86
3911 5125 5.015284 GGCTAAGGGGAAGGATTTACCATAT 59.985 44.000 0.00 0.00 42.04 1.78
3912 5126 4.352893 GGCTAAGGGGAAGGATTTACCATA 59.647 45.833 0.00 0.00 42.04 2.74
3913 5127 3.140332 GGCTAAGGGGAAGGATTTACCAT 59.860 47.826 0.00 0.00 42.04 3.55
3914 5128 2.512476 GGCTAAGGGGAAGGATTTACCA 59.488 50.000 0.00 0.00 42.04 3.25
3915 5129 2.486727 CGGCTAAGGGGAAGGATTTACC 60.487 54.545 0.00 0.00 39.35 2.85
3916 5130 2.486727 CCGGCTAAGGGGAAGGATTTAC 60.487 54.545 0.00 0.00 0.00 2.01
3917 5131 1.772453 CCGGCTAAGGGGAAGGATTTA 59.228 52.381 0.00 0.00 0.00 1.40
3918 5132 0.551396 CCGGCTAAGGGGAAGGATTT 59.449 55.000 0.00 0.00 0.00 2.17
3919 5133 1.996070 GCCGGCTAAGGGGAAGGATT 61.996 60.000 22.15 0.00 0.00 3.01
3920 5134 2.452937 GCCGGCTAAGGGGAAGGAT 61.453 63.158 22.15 0.00 0.00 3.24
3921 5135 3.087906 GCCGGCTAAGGGGAAGGA 61.088 66.667 22.15 0.00 0.00 3.36
3922 5136 4.191015 GGCCGGCTAAGGGGAAGG 62.191 72.222 28.56 0.00 0.00 3.46
3923 5137 4.547367 CGGCCGGCTAAGGGGAAG 62.547 72.222 28.56 2.86 0.00 3.46
3925 5139 4.872574 ATCGGCCGGCTAAGGGGA 62.873 66.667 28.56 14.12 0.00 4.81
3926 5140 4.315941 GATCGGCCGGCTAAGGGG 62.316 72.222 28.56 9.00 0.00 4.79
3927 5141 4.315941 GGATCGGCCGGCTAAGGG 62.316 72.222 28.56 10.87 0.00 3.95
3949 5163 2.662596 GCGTCTGGTGGATGTCCA 59.337 61.111 0.00 0.00 45.30 4.02
3950 5164 2.509336 CGCGTCTGGTGGATGTCC 60.509 66.667 0.00 0.00 33.69 4.02
3951 5165 3.188786 GCGCGTCTGGTGGATGTC 61.189 66.667 8.43 0.00 33.69 3.06
3952 5166 3.695606 AGCGCGTCTGGTGGATGT 61.696 61.111 8.43 0.00 33.69 3.06
3953 5167 3.190849 CAGCGCGTCTGGTGGATG 61.191 66.667 18.78 0.00 39.15 3.51
3959 5173 2.432456 TAACAGCAGCGCGTCTGG 60.432 61.111 27.09 15.16 43.06 3.86
3960 5174 0.803768 ATCTAACAGCAGCGCGTCTG 60.804 55.000 23.80 23.80 45.62 3.51
3961 5175 0.526524 GATCTAACAGCAGCGCGTCT 60.527 55.000 8.43 1.94 0.00 4.18
3962 5176 0.802222 TGATCTAACAGCAGCGCGTC 60.802 55.000 8.43 0.00 0.00 5.19
3963 5177 0.803768 CTGATCTAACAGCAGCGCGT 60.804 55.000 8.43 0.00 0.00 6.01
3964 5178 0.526310 TCTGATCTAACAGCAGCGCG 60.526 55.000 0.00 0.00 37.75 6.86
3965 5179 1.791785 GATCTGATCTAACAGCAGCGC 59.208 52.381 10.37 0.00 37.75 5.92
3966 5180 2.049959 CGATCTGATCTAACAGCAGCG 58.950 52.381 15.16 0.00 37.75 5.18
3967 5181 3.361794 TCGATCTGATCTAACAGCAGC 57.638 47.619 15.16 0.00 37.75 5.25
3977 5191 7.981963 AGGCAACCATGTGATCGATCTGATC 62.982 48.000 25.02 16.01 46.44 2.92
3978 5192 3.136763 GCAACCATGTGATCGATCTGAT 58.863 45.455 25.02 14.10 41.06 2.90
3979 5193 2.554142 GCAACCATGTGATCGATCTGA 58.446 47.619 25.02 12.47 0.00 3.27
3980 5194 1.600957 GGCAACCATGTGATCGATCTG 59.399 52.381 25.02 15.25 0.00 2.90
3981 5195 1.487976 AGGCAACCATGTGATCGATCT 59.512 47.619 25.02 3.30 37.17 2.75
3982 5196 1.869767 GAGGCAACCATGTGATCGATC 59.130 52.381 18.72 18.72 37.17 3.69
3983 5197 1.475751 GGAGGCAACCATGTGATCGAT 60.476 52.381 0.00 0.00 37.17 3.59
3984 5198 0.107703 GGAGGCAACCATGTGATCGA 60.108 55.000 0.00 0.00 37.17 3.59
3985 5199 0.107508 AGGAGGCAACCATGTGATCG 60.108 55.000 3.78 0.00 37.17 3.69
3986 5200 2.019984 GAAGGAGGCAACCATGTGATC 58.980 52.381 3.78 0.00 37.17 2.92
3987 5201 1.637553 AGAAGGAGGCAACCATGTGAT 59.362 47.619 3.78 0.00 37.17 3.06
3988 5202 1.003580 GAGAAGGAGGCAACCATGTGA 59.996 52.381 3.78 0.00 37.17 3.58
3989 5203 1.004044 AGAGAAGGAGGCAACCATGTG 59.996 52.381 3.78 0.00 37.17 3.21
3990 5204 1.280421 GAGAGAAGGAGGCAACCATGT 59.720 52.381 3.78 0.00 37.17 3.21
3991 5205 1.558756 AGAGAGAAGGAGGCAACCATG 59.441 52.381 3.78 0.00 37.17 3.66
3992 5206 1.963985 AGAGAGAAGGAGGCAACCAT 58.036 50.000 3.78 0.00 37.17 3.55
3993 5207 1.349026 CAAGAGAGAAGGAGGCAACCA 59.651 52.381 3.78 0.00 37.17 3.67
3994 5208 1.339535 CCAAGAGAGAAGGAGGCAACC 60.340 57.143 0.00 0.00 37.17 3.77
3995 5209 1.349357 ACCAAGAGAGAAGGAGGCAAC 59.651 52.381 0.00 0.00 0.00 4.17
3996 5210 1.625818 GACCAAGAGAGAAGGAGGCAA 59.374 52.381 0.00 0.00 0.00 4.52
3997 5211 1.270907 GACCAAGAGAGAAGGAGGCA 58.729 55.000 0.00 0.00 0.00 4.75
3998 5212 0.539518 GGACCAAGAGAGAAGGAGGC 59.460 60.000 0.00 0.00 0.00 4.70
3999 5213 1.199615 GGGACCAAGAGAGAAGGAGG 58.800 60.000 0.00 0.00 0.00 4.30
4000 5214 1.552792 GTGGGACCAAGAGAGAAGGAG 59.447 57.143 0.00 0.00 0.00 3.69
4001 5215 1.132849 TGTGGGACCAAGAGAGAAGGA 60.133 52.381 0.00 0.00 0.00 3.36
4002 5216 1.002544 GTGTGGGACCAAGAGAGAAGG 59.997 57.143 0.00 0.00 0.00 3.46
4003 5217 1.002544 GGTGTGGGACCAAGAGAGAAG 59.997 57.143 0.00 0.00 45.34 2.85
4004 5218 1.056660 GGTGTGGGACCAAGAGAGAA 58.943 55.000 0.00 0.00 45.34 2.87
4005 5219 2.759985 GGTGTGGGACCAAGAGAGA 58.240 57.895 0.00 0.00 45.34 3.10
4013 5227 1.990614 GGAGAGAGGGTGTGGGACC 60.991 68.421 0.00 0.00 45.28 4.46
4014 5228 1.990614 GGGAGAGAGGGTGTGGGAC 60.991 68.421 0.00 0.00 0.00 4.46
4015 5229 0.854039 TAGGGAGAGAGGGTGTGGGA 60.854 60.000 0.00 0.00 0.00 4.37
4016 5230 0.266152 ATAGGGAGAGAGGGTGTGGG 59.734 60.000 0.00 0.00 0.00 4.61
4017 5231 1.219213 AGATAGGGAGAGAGGGTGTGG 59.781 57.143 0.00 0.00 0.00 4.17
4018 5232 2.315176 CAGATAGGGAGAGAGGGTGTG 58.685 57.143 0.00 0.00 0.00 3.82
4019 5233 1.219213 CCAGATAGGGAGAGAGGGTGT 59.781 57.143 0.00 0.00 0.00 4.16
4020 5234 1.501170 TCCAGATAGGGAGAGAGGGTG 59.499 57.143 0.00 0.00 38.24 4.61
4021 5235 1.928480 TCCAGATAGGGAGAGAGGGT 58.072 55.000 0.00 0.00 38.24 4.34
4022 5236 2.969262 GTTTCCAGATAGGGAGAGAGGG 59.031 54.545 0.00 0.00 38.42 4.30
4023 5237 3.647636 TGTTTCCAGATAGGGAGAGAGG 58.352 50.000 0.00 0.00 38.42 3.69
4024 5238 4.283212 GGATGTTTCCAGATAGGGAGAGAG 59.717 50.000 0.00 0.00 42.12 3.20
4025 5239 4.227197 GGATGTTTCCAGATAGGGAGAGA 58.773 47.826 0.00 0.00 42.12 3.10
4026 5240 4.615588 GGATGTTTCCAGATAGGGAGAG 57.384 50.000 0.00 0.00 42.12 3.20
4038 5252 2.362077 ACTGTTGCTTGTGGATGTTTCC 59.638 45.455 0.00 0.00 42.94 3.13
4039 5253 3.374745 CACTGTTGCTTGTGGATGTTTC 58.625 45.455 0.00 0.00 0.00 2.78
4040 5254 2.481795 GCACTGTTGCTTGTGGATGTTT 60.482 45.455 0.00 0.00 46.17 2.83
4041 5255 1.067516 GCACTGTTGCTTGTGGATGTT 59.932 47.619 0.00 0.00 46.17 2.71
4042 5256 0.670162 GCACTGTTGCTTGTGGATGT 59.330 50.000 0.00 0.00 46.17 3.06
4043 5257 3.484524 GCACTGTTGCTTGTGGATG 57.515 52.632 0.00 0.00 46.17 3.51
4052 5266 7.541098 CTTGAGGACAAGTATGCACTGTTGC 62.541 48.000 0.00 0.00 46.34 4.17
4053 5267 3.402110 TGAGGACAAGTATGCACTGTTG 58.598 45.455 0.00 0.00 34.36 3.33
4054 5268 3.769739 TGAGGACAAGTATGCACTGTT 57.230 42.857 0.00 0.00 34.36 3.16
4055 5269 3.668447 CTTGAGGACAAGTATGCACTGT 58.332 45.455 0.00 0.00 45.73 3.55
4066 5280 8.090214 GATTTGAAAATCAATCCTTGAGGACAA 58.910 33.333 10.25 0.00 44.21 3.18
4067 5281 7.309990 GGATTTGAAAATCAATCCTTGAGGACA 60.310 37.037 15.66 0.00 45.33 4.02
4068 5282 7.038048 GGATTTGAAAATCAATCCTTGAGGAC 58.962 38.462 15.66 0.00 45.33 3.85
4069 5283 6.725369 TGGATTTGAAAATCAATCCTTGAGGA 59.275 34.615 15.66 1.54 45.92 3.71
4070 5284 6.938507 TGGATTTGAAAATCAATCCTTGAGG 58.061 36.000 15.66 0.00 45.10 3.86
4071 5285 8.644318 GATGGATTTGAAAATCAATCCTTGAG 57.356 34.615 17.25 0.00 44.60 3.02
4078 5292 6.417258 GTTGGGGATGGATTTGAAAATCAAT 58.583 36.000 15.66 10.87 45.10 2.57
4079 5293 5.280419 GGTTGGGGATGGATTTGAAAATCAA 60.280 40.000 15.66 6.70 45.10 2.57
4080 5294 4.224818 GGTTGGGGATGGATTTGAAAATCA 59.775 41.667 15.66 4.80 45.10 2.57
4081 5295 4.224818 TGGTTGGGGATGGATTTGAAAATC 59.775 41.667 7.15 7.15 43.12 2.17
4082 5296 4.174383 TGGTTGGGGATGGATTTGAAAAT 58.826 39.130 0.00 0.00 0.00 1.82
4083 5297 3.591789 TGGTTGGGGATGGATTTGAAAA 58.408 40.909 0.00 0.00 0.00 2.29
4084 5298 3.266477 TGGTTGGGGATGGATTTGAAA 57.734 42.857 0.00 0.00 0.00 2.69
4085 5299 3.488355 ATGGTTGGGGATGGATTTGAA 57.512 42.857 0.00 0.00 0.00 2.69
4086 5300 4.169658 TCATATGGTTGGGGATGGATTTGA 59.830 41.667 2.13 0.00 0.00 2.69
4087 5301 4.281688 GTCATATGGTTGGGGATGGATTTG 59.718 45.833 2.13 0.00 0.00 2.32
4088 5302 4.482990 GTCATATGGTTGGGGATGGATTT 58.517 43.478 2.13 0.00 0.00 2.17
4089 5303 3.181418 GGTCATATGGTTGGGGATGGATT 60.181 47.826 2.13 0.00 0.00 3.01
4090 5304 2.379907 GGTCATATGGTTGGGGATGGAT 59.620 50.000 2.13 0.00 0.00 3.41
4091 5305 1.780309 GGTCATATGGTTGGGGATGGA 59.220 52.381 2.13 0.00 0.00 3.41
4092 5306 1.545428 CGGTCATATGGTTGGGGATGG 60.545 57.143 2.13 0.00 0.00 3.51
4093 5307 1.419762 TCGGTCATATGGTTGGGGATG 59.580 52.381 2.13 0.00 0.00 3.51
4094 5308 1.699634 CTCGGTCATATGGTTGGGGAT 59.300 52.381 2.13 0.00 0.00 3.85
4095 5309 1.128200 CTCGGTCATATGGTTGGGGA 58.872 55.000 2.13 0.00 0.00 4.81
4096 5310 1.128200 TCTCGGTCATATGGTTGGGG 58.872 55.000 2.13 0.00 0.00 4.96
4097 5311 3.617531 GCTATCTCGGTCATATGGTTGGG 60.618 52.174 2.13 0.00 0.00 4.12
4098 5312 3.589988 GCTATCTCGGTCATATGGTTGG 58.410 50.000 2.13 0.00 0.00 3.77
4099 5313 3.259374 AGGCTATCTCGGTCATATGGTTG 59.741 47.826 2.13 0.00 0.00 3.77
4100 5314 3.511477 AGGCTATCTCGGTCATATGGTT 58.489 45.455 2.13 0.00 0.00 3.67
4101 5315 3.176924 AGGCTATCTCGGTCATATGGT 57.823 47.619 2.13 0.00 0.00 3.55
4102 5316 3.259374 ACAAGGCTATCTCGGTCATATGG 59.741 47.826 2.13 0.00 0.00 2.74
4103 5317 4.021981 TGACAAGGCTATCTCGGTCATATG 60.022 45.833 0.00 0.00 35.88 1.78
4104 5318 4.152647 TGACAAGGCTATCTCGGTCATAT 58.847 43.478 0.00 0.00 35.88 1.78
4105 5319 3.562182 TGACAAGGCTATCTCGGTCATA 58.438 45.455 0.00 0.00 35.88 2.15
4106 5320 2.388735 TGACAAGGCTATCTCGGTCAT 58.611 47.619 0.00 0.00 35.88 3.06
4107 5321 1.847328 TGACAAGGCTATCTCGGTCA 58.153 50.000 0.00 0.00 37.36 4.02
4108 5322 2.482142 CCTTGACAAGGCTATCTCGGTC 60.482 54.545 21.10 0.00 42.78 4.79
4109 5323 1.482593 CCTTGACAAGGCTATCTCGGT 59.517 52.381 21.10 0.00 42.78 4.69
4110 5324 2.231215 CCTTGACAAGGCTATCTCGG 57.769 55.000 21.10 0.00 42.78 4.63
4120 5334 4.569943 TCTTCGAATCCTTCCTTGACAAG 58.430 43.478 8.31 8.31 0.00 3.16
4121 5335 4.617253 TCTTCGAATCCTTCCTTGACAA 57.383 40.909 0.00 0.00 0.00 3.18
4122 5336 4.617253 TTCTTCGAATCCTTCCTTGACA 57.383 40.909 0.00 0.00 0.00 3.58
4123 5337 5.423886 AGATTCTTCGAATCCTTCCTTGAC 58.576 41.667 11.75 0.00 0.00 3.18
4124 5338 5.683876 AGATTCTTCGAATCCTTCCTTGA 57.316 39.130 11.75 0.00 0.00 3.02
4125 5339 6.749923 AAAGATTCTTCGAATCCTTCCTTG 57.250 37.500 11.75 0.00 0.00 3.61
4126 5340 9.114952 GAATAAAGATTCTTCGAATCCTTCCTT 57.885 33.333 11.75 4.90 38.78 3.36
4127 5341 8.267894 TGAATAAAGATTCTTCGAATCCTTCCT 58.732 33.333 11.75 0.00 41.87 3.36
4128 5342 8.438676 TGAATAAAGATTCTTCGAATCCTTCC 57.561 34.615 11.75 2.37 41.87 3.46
4129 5343 8.067189 GCTGAATAAAGATTCTTCGAATCCTTC 58.933 37.037 11.75 10.38 41.87 3.46
4130 5344 7.254590 CGCTGAATAAAGATTCTTCGAATCCTT 60.255 37.037 11.75 8.69 41.87 3.36
4131 5345 6.201806 CGCTGAATAAAGATTCTTCGAATCCT 59.798 38.462 11.75 4.24 41.87 3.24
4132 5346 6.018669 ACGCTGAATAAAGATTCTTCGAATCC 60.019 38.462 11.75 0.00 41.87 3.01
4133 5347 6.938542 ACGCTGAATAAAGATTCTTCGAATC 58.061 36.000 0.00 8.20 41.87 2.52
4134 5348 6.535150 TGACGCTGAATAAAGATTCTTCGAAT 59.465 34.615 0.00 0.00 41.87 3.34
4135 5349 5.867174 TGACGCTGAATAAAGATTCTTCGAA 59.133 36.000 0.00 0.00 41.87 3.71
4136 5350 5.407502 TGACGCTGAATAAAGATTCTTCGA 58.592 37.500 0.00 0.00 41.87 3.71
4137 5351 5.702622 TGACGCTGAATAAAGATTCTTCG 57.297 39.130 0.00 0.01 41.87 3.79
4138 5352 7.239166 TGATGACGCTGAATAAAGATTCTTC 57.761 36.000 0.00 0.00 41.87 2.87
4139 5353 7.307042 CGATGATGACGCTGAATAAAGATTCTT 60.307 37.037 0.00 0.00 41.87 2.52
4140 5354 6.145209 CGATGATGACGCTGAATAAAGATTCT 59.855 38.462 0.00 0.00 41.87 2.40
4141 5355 6.074088 ACGATGATGACGCTGAATAAAGATTC 60.074 38.462 0.00 0.00 41.72 2.52
4142 5356 5.755375 ACGATGATGACGCTGAATAAAGATT 59.245 36.000 0.00 0.00 0.00 2.40
4143 5357 5.292765 ACGATGATGACGCTGAATAAAGAT 58.707 37.500 0.00 0.00 0.00 2.40
4144 5358 4.682787 ACGATGATGACGCTGAATAAAGA 58.317 39.130 0.00 0.00 0.00 2.52
4145 5359 4.504097 TGACGATGATGACGCTGAATAAAG 59.496 41.667 0.00 0.00 0.00 1.85
4146 5360 4.267690 GTGACGATGATGACGCTGAATAAA 59.732 41.667 0.00 0.00 0.00 1.40
4147 5361 3.796717 GTGACGATGATGACGCTGAATAA 59.203 43.478 0.00 0.00 0.00 1.40
4148 5362 3.372060 GTGACGATGATGACGCTGAATA 58.628 45.455 0.00 0.00 0.00 1.75
4149 5363 2.196749 GTGACGATGATGACGCTGAAT 58.803 47.619 0.00 0.00 0.00 2.57
4150 5364 1.629013 GTGACGATGATGACGCTGAA 58.371 50.000 0.00 0.00 0.00 3.02
4151 5365 0.179137 GGTGACGATGATGACGCTGA 60.179 55.000 0.00 0.00 0.00 4.26
4152 5366 2.291843 GGTGACGATGATGACGCTG 58.708 57.895 0.00 0.00 0.00 5.18
4153 5367 4.814900 GGTGACGATGATGACGCT 57.185 55.556 0.00 0.00 0.00 5.07
4171 5385 1.588861 GTTCATCGTCTTAGCTTCGGC 59.411 52.381 0.00 0.00 42.17 5.54
4172 5386 2.854777 CTGTTCATCGTCTTAGCTTCGG 59.145 50.000 0.00 0.00 0.00 4.30
4173 5387 2.280183 GCTGTTCATCGTCTTAGCTTCG 59.720 50.000 0.00 0.00 0.00 3.79
4174 5388 2.605366 GGCTGTTCATCGTCTTAGCTTC 59.395 50.000 0.00 0.00 0.00 3.86
4175 5389 2.234908 AGGCTGTTCATCGTCTTAGCTT 59.765 45.455 0.00 0.00 0.00 3.74
4176 5390 1.827969 AGGCTGTTCATCGTCTTAGCT 59.172 47.619 0.00 0.00 0.00 3.32
4177 5391 2.301577 AGGCTGTTCATCGTCTTAGC 57.698 50.000 0.00 0.00 0.00 3.09
4178 5392 6.402226 GGTTTTTAGGCTGTTCATCGTCTTAG 60.402 42.308 0.00 0.00 0.00 2.18
4179 5393 5.410439 GGTTTTTAGGCTGTTCATCGTCTTA 59.590 40.000 0.00 0.00 0.00 2.10
4180 5394 4.215613 GGTTTTTAGGCTGTTCATCGTCTT 59.784 41.667 0.00 0.00 0.00 3.01
4181 5395 3.751698 GGTTTTTAGGCTGTTCATCGTCT 59.248 43.478 0.00 0.00 0.00 4.18
4182 5396 3.751698 AGGTTTTTAGGCTGTTCATCGTC 59.248 43.478 0.00 0.00 0.00 4.20
4183 5397 3.751518 AGGTTTTTAGGCTGTTCATCGT 58.248 40.909 0.00 0.00 0.00 3.73
4184 5398 5.175859 TCTAGGTTTTTAGGCTGTTCATCG 58.824 41.667 0.00 0.00 0.00 3.84
4185 5399 7.631717 AATCTAGGTTTTTAGGCTGTTCATC 57.368 36.000 0.00 0.00 0.00 2.92
4186 5400 7.280205 CGTAATCTAGGTTTTTAGGCTGTTCAT 59.720 37.037 0.00 0.00 0.00 2.57
4187 5401 6.592607 CGTAATCTAGGTTTTTAGGCTGTTCA 59.407 38.462 0.00 0.00 0.00 3.18
4188 5402 6.815142 TCGTAATCTAGGTTTTTAGGCTGTTC 59.185 38.462 0.00 0.00 0.00 3.18
4189 5403 6.704310 TCGTAATCTAGGTTTTTAGGCTGTT 58.296 36.000 0.00 0.00 0.00 3.16
4190 5404 6.154021 TCTCGTAATCTAGGTTTTTAGGCTGT 59.846 38.462 0.00 0.00 0.00 4.40
4191 5405 6.570692 TCTCGTAATCTAGGTTTTTAGGCTG 58.429 40.000 0.00 0.00 0.00 4.85
4192 5406 6.606395 TCTCTCGTAATCTAGGTTTTTAGGCT 59.394 38.462 0.00 0.00 0.00 4.58
4193 5407 6.803642 TCTCTCGTAATCTAGGTTTTTAGGC 58.196 40.000 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.