Multiple sequence alignment - TraesCS5D01G314300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G314300 chr5D 100.000 5340 0 0 1 5340 408998086 409003425 0.000000e+00 9862.0
1 TraesCS5D01G314300 chr5B 91.271 2612 168 37 1788 4377 491033647 491036220 0.000000e+00 3506.0
2 TraesCS5D01G314300 chr5B 84.687 862 82 27 4490 5340 491036362 491037184 0.000000e+00 815.0
3 TraesCS5D01G314300 chr5B 88.109 698 47 20 658 1348 491032098 491032766 0.000000e+00 797.0
4 TraesCS5D01G314300 chr5B 90.845 284 24 2 1375 1656 491032932 491033215 3.900000e-101 379.0
5 TraesCS5D01G314300 chr5B 87.417 151 18 1 3576 3726 491082207 491082356 7.110000e-39 172.0
6 TraesCS5D01G314300 chr5A 92.163 1812 100 21 1788 3577 520093773 520095564 0.000000e+00 2521.0
7 TraesCS5D01G314300 chr5A 89.817 1041 55 19 625 1651 520092334 520093337 0.000000e+00 1288.0
8 TraesCS5D01G314300 chr5A 89.333 900 62 21 3585 4479 520095652 520096522 0.000000e+00 1099.0
9 TraesCS5D01G314300 chr5A 91.193 352 29 2 1 351 520090301 520090651 1.350000e-130 477.0
10 TraesCS5D01G314300 chr5A 85.251 339 25 15 4898 5227 520112971 520113293 5.160000e-85 326.0
11 TraesCS5D01G314300 chr5A 86.942 291 25 7 4490 4779 520096590 520096868 1.120000e-81 315.0
12 TraesCS5D01G314300 chr5A 89.516 124 11 1 4757 4878 520112859 520112982 7.160000e-34 156.0
13 TraesCS5D01G314300 chr5A 88.764 89 9 1 4687 4775 520112758 520112845 2.030000e-19 108.0
14 TraesCS5D01G314300 chr5A 96.491 57 2 0 565 621 520092078 520092134 1.580000e-15 95.3
15 TraesCS5D01G314300 chr5A 93.617 47 3 0 1400 1446 674169184 674169230 2.670000e-08 71.3
16 TraesCS5D01G314300 chr3B 87.975 158 18 1 1374 1530 82839348 82839191 9.130000e-43 185.0
17 TraesCS5D01G314300 chr3B 86.275 153 20 1 1372 1523 82849064 82848912 1.190000e-36 165.0
18 TraesCS5D01G314300 chr3B 74.242 264 54 11 86 339 384727658 384727399 1.220000e-16 99.0
19 TraesCS5D01G314300 chr3A 87.333 150 19 0 1374 1523 64308005 64307856 7.110000e-39 172.0
20 TraesCS5D01G314300 chr3A 88.571 105 10 2 86 190 674336854 674336956 5.610000e-25 126.0
21 TraesCS5D01G314300 chr3A 85.366 123 16 2 66 188 745458653 745458773 5.610000e-25 126.0
22 TraesCS5D01G314300 chr3A 88.889 99 9 2 86 184 673603632 673603728 2.610000e-23 121.0
23 TraesCS5D01G314300 chr3A 87.879 66 8 0 271 336 458804089 458804154 1.590000e-10 78.7
24 TraesCS5D01G314300 chr3A 87.302 63 7 1 424 485 464912099 464912161 2.670000e-08 71.3
25 TraesCS5D01G314300 chr4D 88.525 122 14 0 1400 1521 494833350 494833229 1.200000e-31 148.0
26 TraesCS5D01G314300 chr4B 88.525 122 14 0 1400 1521 634344319 634344198 1.200000e-31 148.0
27 TraesCS5D01G314300 chr3D 84.314 153 23 1 1372 1523 51785605 51785453 1.200000e-31 148.0
28 TraesCS5D01G314300 chr3D 78.740 127 20 5 342 468 19829685 19829566 1.590000e-10 78.7
29 TraesCS5D01G314300 chr3D 88.889 63 7 0 423 485 339849370 339849308 1.590000e-10 78.7
30 TraesCS5D01G314300 chr2A 89.524 105 10 1 86 190 744595596 744595493 1.210000e-26 132.0
31 TraesCS5D01G314300 chr2A 85.897 78 10 1 260 336 102049609 102049532 1.230000e-11 82.4
32 TraesCS5D01G314300 chr2A 86.111 72 10 0 421 492 555496830 555496901 1.590000e-10 78.7
33 TraesCS5D01G314300 chr4A 87.611 113 12 2 86 198 36401468 36401578 4.340000e-26 130.0
34 TraesCS5D01G314300 chr7A 89.899 99 9 1 86 184 57132287 57132384 5.610000e-25 126.0
35 TraesCS5D01G314300 chr7B 87.619 105 11 2 86 190 545728726 545728624 2.610000e-23 121.0
36 TraesCS5D01G314300 chr7B 73.462 260 57 11 86 336 711076168 711075912 2.650000e-13 87.9
37 TraesCS5D01G314300 chr1A 88.889 99 9 2 86 184 42225903 42225999 2.610000e-23 121.0
38 TraesCS5D01G314300 chr2B 73.946 261 57 10 84 336 148251487 148251744 1.580000e-15 95.3
39 TraesCS5D01G314300 chr2D 91.176 68 4 1 225 290 26461537 26461470 2.050000e-14 91.6
40 TraesCS5D01G314300 chr2D 89.394 66 7 0 271 336 69254219 69254284 3.430000e-12 84.2
41 TraesCS5D01G314300 chr2D 91.071 56 4 1 1780 1835 489669515 489669569 2.060000e-09 75.0
42 TraesCS5D01G314300 chr1B 73.563 261 55 12 86 337 262522817 262522562 2.650000e-13 87.9
43 TraesCS5D01G314300 chr1B 89.062 64 7 0 273 336 424081050 424081113 4.430000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G314300 chr5D 408998086 409003425 5339 False 9862.000000 9862 100.000000 1 5340 1 chr5D.!!$F1 5339
1 TraesCS5D01G314300 chr5B 491032098 491037184 5086 False 1374.250000 3506 88.728000 658 5340 4 chr5B.!!$F2 4682
2 TraesCS5D01G314300 chr5A 520090301 520096868 6567 False 965.883333 2521 90.989833 1 4779 6 chr5A.!!$F2 4778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 2161 0.102481 ATCAGCATGTACGTCCGTCC 59.898 55.0 0.0 0.0 37.40 4.79 F
1567 3142 0.175760 ACCATCGGTTCGTCTCCATG 59.824 55.0 0.0 0.0 27.29 3.66 F
2294 4178 0.193574 AAGGTCCCACTTCCTCCTCA 59.806 55.0 0.0 0.0 33.09 3.86 F
4057 6046 0.038166 GGGTGAGGACTGATTTGCCA 59.962 55.0 0.0 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 4119 0.179119 GGGTGACGACTTGGGTATCG 60.179 60.000 0.0 0.0 43.97 2.92 R
2867 4760 0.247185 AAATGCCGCCAGAACCATTG 59.753 50.000 0.0 0.0 0.00 2.82 R
4248 6241 0.179056 ATGTCCACCGCCCTATTTCG 60.179 55.000 0.0 0.0 0.00 3.46 R
5071 7133 3.426787 TTTAATGGGAAGTGAAGCCGA 57.573 42.857 0.0 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.454585 TCTATAGAATACAAATCCAACGTTACG 57.545 33.333 0.00 2.19 0.00 3.18
95 96 4.388773 TCAAAATCGCTCACATACACTCAC 59.611 41.667 0.00 0.00 0.00 3.51
98 99 1.472878 TCGCTCACATACACTCACCTC 59.527 52.381 0.00 0.00 0.00 3.85
101 102 3.316588 CGCTCACATACACTCACCTCTAT 59.683 47.826 0.00 0.00 0.00 1.98
102 103 4.615949 GCTCACATACACTCACCTCTATG 58.384 47.826 0.00 0.00 0.00 2.23
104 105 5.163509 GCTCACATACACTCACCTCTATGAA 60.164 44.000 0.00 0.00 0.00 2.57
141 142 3.622630 CCTATCCCTATGAGTACCTCCG 58.377 54.545 0.00 0.00 0.00 4.63
159 160 1.519719 GAGAGACTGAGCCGGCATT 59.480 57.895 31.54 9.09 0.00 3.56
168 169 3.181397 CTGAGCCGGCATTAACATTTTG 58.819 45.455 31.54 4.91 0.00 2.44
185 186 6.077838 ACATTTTGAGATTTTACGAAGTCGC 58.922 36.000 0.00 0.00 43.93 5.19
213 214 1.547675 GCCTCACAATCAAGGGGAACA 60.548 52.381 0.00 0.00 32.98 3.18
221 222 4.840115 ACAATCAAGGGGAACAAACATCAT 59.160 37.500 0.00 0.00 0.00 2.45
230 231 3.191371 GGAACAAACATCATCGAAAGCCT 59.809 43.478 0.00 0.00 0.00 4.58
236 237 6.150976 ACAAACATCATCGAAAGCCTGAAATA 59.849 34.615 0.00 0.00 0.00 1.40
283 284 1.264295 AAGTCTAGGACGTGAACCCC 58.736 55.000 0.00 0.00 37.67 4.95
299 300 3.700198 CCCGGTGGGCTAAAGATAC 57.300 57.895 0.00 0.00 35.35 2.24
309 310 2.772515 GGCTAAAGATACCACTGTCCCT 59.227 50.000 0.00 0.00 0.00 4.20
318 319 2.632537 ACCACTGTCCCTCTAACCATT 58.367 47.619 0.00 0.00 0.00 3.16
375 377 8.576442 ACTTCTTTCGAATACAAATTCAATGGT 58.424 29.630 0.00 0.00 41.44 3.55
377 379 9.834628 TTCTTTCGAATACAAATTCAATGGTAC 57.165 29.630 0.00 0.00 41.44 3.34
378 380 8.172484 TCTTTCGAATACAAATTCAATGGTACG 58.828 33.333 0.00 0.00 41.44 3.67
379 381 6.971527 TCGAATACAAATTCAATGGTACGT 57.028 33.333 0.00 0.00 41.44 3.57
381 383 8.651391 TCGAATACAAATTCAATGGTACGTAT 57.349 30.769 0.00 0.00 41.44 3.06
388 390 9.832445 ACAAATTCAATGGTACGTATAATCTCT 57.168 29.630 0.00 0.00 0.00 3.10
393 395 8.867112 TCAATGGTACGTATAATCTCTTTCAC 57.133 34.615 0.00 0.00 0.00 3.18
410 412 8.778059 TCTCTTTCACATATAATTAACCACCCT 58.222 33.333 0.00 0.00 0.00 4.34
411 413 9.408648 CTCTTTCACATATAATTAACCACCCTT 57.591 33.333 0.00 0.00 0.00 3.95
418 420 9.788889 ACATATAATTAACCACCCTTAGTTAGC 57.211 33.333 0.00 0.00 30.57 3.09
419 421 9.227777 CATATAATTAACCACCCTTAGTTAGCC 57.772 37.037 0.00 0.00 30.57 3.93
420 422 5.791303 AATTAACCACCCTTAGTTAGCCT 57.209 39.130 0.00 0.00 30.57 4.58
421 423 6.896452 AATTAACCACCCTTAGTTAGCCTA 57.104 37.500 0.00 0.00 30.57 3.93
422 424 6.896452 ATTAACCACCCTTAGTTAGCCTAA 57.104 37.500 0.00 0.00 34.47 2.69
423 425 6.896452 TTAACCACCCTTAGTTAGCCTAAT 57.104 37.500 0.00 0.00 35.14 1.73
424 426 5.791303 AACCACCCTTAGTTAGCCTAATT 57.209 39.130 0.00 0.00 35.14 1.40
425 427 5.791303 ACCACCCTTAGTTAGCCTAATTT 57.209 39.130 0.00 0.00 35.14 1.82
426 428 6.896452 ACCACCCTTAGTTAGCCTAATTTA 57.104 37.500 0.00 0.00 35.14 1.40
427 429 7.461633 ACCACCCTTAGTTAGCCTAATTTAT 57.538 36.000 0.00 0.00 35.14 1.40
428 430 7.287810 ACCACCCTTAGTTAGCCTAATTTATG 58.712 38.462 0.00 0.00 35.14 1.90
429 431 6.715264 CCACCCTTAGTTAGCCTAATTTATGG 59.285 42.308 0.00 0.00 35.14 2.74
430 432 7.287810 CACCCTTAGTTAGCCTAATTTATGGT 58.712 38.462 0.00 0.00 35.14 3.55
432 434 7.128263 ACCCTTAGTTAGCCTAATTTATGGTCA 59.872 37.037 0.00 0.00 35.14 4.02
433 435 7.996644 CCCTTAGTTAGCCTAATTTATGGTCAA 59.003 37.037 0.00 0.00 35.14 3.18
434 436 9.574516 CCTTAGTTAGCCTAATTTATGGTCAAT 57.425 33.333 0.00 0.00 35.14 2.57
436 438 9.914834 TTAGTTAGCCTAATTTATGGTCAATGT 57.085 29.630 0.00 0.00 30.55 2.71
437 439 8.823220 AGTTAGCCTAATTTATGGTCAATGTT 57.177 30.769 0.00 0.00 0.00 2.71
438 440 9.255029 AGTTAGCCTAATTTATGGTCAATGTTT 57.745 29.630 0.00 0.00 0.00 2.83
454 456 9.332301 GGTCAATGTTTAATTTTGAAATGCATG 57.668 29.630 0.00 0.00 31.66 4.06
457 459 8.631695 CAATGTTTAATTTTGAAATGCATGCAC 58.368 29.630 25.37 11.49 0.00 4.57
458 460 7.255491 TGTTTAATTTTGAAATGCATGCACA 57.745 28.000 25.37 14.36 0.00 4.57
460 462 4.752661 AATTTTGAAATGCATGCACACC 57.247 36.364 25.37 14.83 0.00 4.16
461 463 3.472283 TTTTGAAATGCATGCACACCT 57.528 38.095 25.37 3.57 0.00 4.00
462 464 3.472283 TTTGAAATGCATGCACACCTT 57.528 38.095 25.37 13.91 0.00 3.50
464 466 4.804868 TTGAAATGCATGCACACCTTAT 57.195 36.364 25.37 1.29 0.00 1.73
465 467 4.804868 TGAAATGCATGCACACCTTATT 57.195 36.364 25.37 8.74 0.00 1.40
466 468 5.149973 TGAAATGCATGCACACCTTATTT 57.850 34.783 25.37 17.41 0.00 1.40
467 469 6.278172 TGAAATGCATGCACACCTTATTTA 57.722 33.333 25.37 3.91 0.00 1.40
468 470 6.876155 TGAAATGCATGCACACCTTATTTAT 58.124 32.000 25.37 0.00 0.00 1.40
469 471 7.329499 TGAAATGCATGCACACCTTATTTATT 58.671 30.769 25.37 5.67 0.00 1.40
471 473 5.008619 TGCATGCACACCTTATTTATTGG 57.991 39.130 18.46 0.00 0.00 3.16
473 475 5.186603 TGCATGCACACCTTATTTATTGGAA 59.813 36.000 18.46 0.00 0.00 3.53
474 476 6.127111 TGCATGCACACCTTATTTATTGGAAT 60.127 34.615 18.46 0.00 0.00 3.01
475 477 6.201425 GCATGCACACCTTATTTATTGGAATG 59.799 38.462 14.21 0.00 0.00 2.67
476 478 6.219417 TGCACACCTTATTTATTGGAATGG 57.781 37.500 0.00 0.00 0.00 3.16
477 479 5.954752 TGCACACCTTATTTATTGGAATGGA 59.045 36.000 0.00 0.00 0.00 3.41
479 481 6.461509 GCACACCTTATTTATTGGAATGGAGG 60.462 42.308 0.00 0.00 33.46 4.30
480 482 6.040842 CACACCTTATTTATTGGAATGGAGGG 59.959 42.308 0.00 0.00 32.43 4.30
481 483 6.068498 ACACCTTATTTATTGGAATGGAGGGA 60.068 38.462 0.00 0.00 32.43 4.20
482 484 6.491403 CACCTTATTTATTGGAATGGAGGGAG 59.509 42.308 0.00 0.00 32.43 4.30
483 485 6.162241 ACCTTATTTATTGGAATGGAGGGAGT 59.838 38.462 0.00 0.00 32.43 3.85
485 487 8.394040 CCTTATTTATTGGAATGGAGGGAGTAT 58.606 37.037 0.00 0.00 0.00 2.12
486 488 9.813826 CTTATTTATTGGAATGGAGGGAGTATT 57.186 33.333 0.00 0.00 0.00 1.89
489 491 4.706842 TTGGAATGGAGGGAGTATTAGC 57.293 45.455 0.00 0.00 0.00 3.09
490 492 3.941629 TGGAATGGAGGGAGTATTAGCT 58.058 45.455 0.00 0.00 0.00 3.32
492 494 5.473273 TGGAATGGAGGGAGTATTAGCTAA 58.527 41.667 8.99 8.99 0.00 3.09
493 495 5.544176 TGGAATGGAGGGAGTATTAGCTAAG 59.456 44.000 12.54 0.00 0.00 2.18
495 497 6.270231 GGAATGGAGGGAGTATTAGCTAAGAA 59.730 42.308 12.54 0.00 0.00 2.52
496 498 7.037945 GGAATGGAGGGAGTATTAGCTAAGAAT 60.038 40.741 12.54 6.54 0.00 2.40
499 501 8.792830 TGGAGGGAGTATTAGCTAAGAATAAA 57.207 34.615 12.54 0.00 0.00 1.40
500 502 9.220906 TGGAGGGAGTATTAGCTAAGAATAAAA 57.779 33.333 12.54 0.00 0.00 1.52
514 516 9.798885 GCTAAGAATAAAAATAGCATACACGAG 57.201 33.333 0.00 0.00 40.32 4.18
516 518 8.732746 AAGAATAAAAATAGCATACACGAGGT 57.267 30.769 0.00 0.00 0.00 3.85
517 519 8.732746 AGAATAAAAATAGCATACACGAGGTT 57.267 30.769 0.00 0.00 0.00 3.50
519 521 9.434559 GAATAAAAATAGCATACACGAGGTTTC 57.565 33.333 0.00 0.00 0.00 2.78
554 556 9.767228 TTTCGATAAAAATACGATAATCTGGGA 57.233 29.630 0.00 0.00 36.02 4.37
555 557 9.767228 TTCGATAAAAATACGATAATCTGGGAA 57.233 29.630 0.00 0.00 36.02 3.97
556 558 9.199982 TCGATAAAAATACGATAATCTGGGAAC 57.800 33.333 0.00 0.00 0.00 3.62
561 563 6.919775 AATACGATAATCTGGGAACTAGCT 57.080 37.500 0.00 0.00 0.00 3.32
566 568 5.944599 CGATAATCTGGGAACTAGCTAGGTA 59.055 44.000 24.35 3.00 0.00 3.08
567 569 6.127952 CGATAATCTGGGAACTAGCTAGGTAC 60.128 46.154 24.35 19.24 0.00 3.34
568 570 4.537945 ATCTGGGAACTAGCTAGGTACA 57.462 45.455 22.71 17.46 0.00 2.90
569 571 3.899726 TCTGGGAACTAGCTAGGTACAG 58.100 50.000 26.03 26.03 32.49 2.74
570 572 3.526430 TCTGGGAACTAGCTAGGTACAGA 59.474 47.826 28.61 28.61 35.83 3.41
571 573 4.168283 TCTGGGAACTAGCTAGGTACAGAT 59.832 45.833 28.61 6.74 34.31 2.90
572 574 4.471548 TGGGAACTAGCTAGGTACAGATC 58.528 47.826 22.71 5.73 0.00 2.75
617 1832 9.140286 TGAATCTAGACTAAATTTCACAAGACG 57.860 33.333 0.00 0.00 0.00 4.18
621 1836 8.746530 TCTAGACTAAATTTCACAAGACGGTAT 58.253 33.333 0.00 0.00 0.00 2.73
623 1838 6.530534 AGACTAAATTTCACAAGACGGTATCG 59.469 38.462 0.00 0.00 43.02 2.92
627 2038 4.724074 TTTCACAAGACGGTATCGGTAT 57.276 40.909 0.00 0.00 41.39 2.73
630 2041 3.695556 TCACAAGACGGTATCGGTATCAA 59.304 43.478 0.00 0.00 41.39 2.57
653 2064 8.117988 TCAACTTTTGTACGATTAACACAACTC 58.882 33.333 0.00 0.00 32.19 3.01
654 2065 7.781548 ACTTTTGTACGATTAACACAACTCT 57.218 32.000 0.00 0.00 32.19 3.24
681 2092 1.269998 CCCGCCCGTATGTTTGAAAAA 59.730 47.619 0.00 0.00 0.00 1.94
743 2161 0.102481 ATCAGCATGTACGTCCGTCC 59.898 55.000 0.00 0.00 37.40 4.79
747 2165 1.664321 GCATGTACGTCCGTCCCTCT 61.664 60.000 0.00 0.00 0.00 3.69
786 2205 1.067354 CGGGCAGTTCTTACTTACCGT 60.067 52.381 0.00 0.00 42.10 4.83
806 2225 2.819608 GTTTAAGCTGATGTGGCAGGAA 59.180 45.455 0.00 0.00 36.41 3.36
816 2235 2.886913 TGTGGCAGGAATTGATTGGAA 58.113 42.857 0.00 0.00 0.00 3.53
823 2242 5.173664 GCAGGAATTGATTGGAAAAGGAAG 58.826 41.667 0.00 0.00 0.00 3.46
909 2338 4.287585 TGTAGGTAGGTGTAGCATTTTGGT 59.712 41.667 0.00 0.00 0.00 3.67
913 2342 4.765339 GGTAGGTGTAGCATTTTGGTTCTT 59.235 41.667 0.00 0.00 0.00 2.52
933 2362 8.862074 GGTTCTTTCTTTATCTTCGTCTAGTTC 58.138 37.037 0.00 0.00 0.00 3.01
1001 2430 2.296471 CTCCGCGGGACTAGATACAAAT 59.704 50.000 27.83 0.00 0.00 2.32
1141 2574 0.967887 CTCCGTCTGCCTCTTCCTCA 60.968 60.000 0.00 0.00 0.00 3.86
1144 2577 0.248825 CGTCTGCCTCTTCCTCATCG 60.249 60.000 0.00 0.00 0.00 3.84
1149 2582 1.902508 TGCCTCTTCCTCATCGTTCTT 59.097 47.619 0.00 0.00 0.00 2.52
1167 2600 1.614241 TTCTACCCTCTGCCGCTTCC 61.614 60.000 0.00 0.00 0.00 3.46
1169 2602 1.612442 TACCCTCTGCCGCTTCCTT 60.612 57.895 0.00 0.00 0.00 3.36
1173 2606 2.048222 TCTGCCGCTTCCTTGTCG 60.048 61.111 0.00 0.00 0.00 4.35
1176 2609 3.479269 GCCGCTTCCTTGTCGTCG 61.479 66.667 0.00 0.00 0.00 5.12
1179 2612 2.426183 CGCTTCCTTGTCGTCGTCG 61.426 63.158 0.00 0.00 38.55 5.12
1186 2619 0.237761 CTTGTCGTCGTCGTCCTCTT 59.762 55.000 1.33 0.00 38.33 2.85
1187 2620 0.236711 TTGTCGTCGTCGTCCTCTTC 59.763 55.000 1.33 0.00 38.33 2.87
1188 2621 1.134281 GTCGTCGTCGTCCTCTTCC 59.866 63.158 1.33 0.00 38.33 3.46
1189 2622 1.004080 TCGTCGTCGTCCTCTTCCT 60.004 57.895 1.33 0.00 38.33 3.36
1190 2623 1.018226 TCGTCGTCGTCCTCTTCCTC 61.018 60.000 1.33 0.00 38.33 3.71
1191 2624 1.801983 GTCGTCGTCCTCTTCCTCC 59.198 63.158 0.00 0.00 0.00 4.30
1192 2625 0.959372 GTCGTCGTCCTCTTCCTCCA 60.959 60.000 0.00 0.00 0.00 3.86
1193 2626 0.677098 TCGTCGTCCTCTTCCTCCAG 60.677 60.000 0.00 0.00 0.00 3.86
1194 2627 1.513622 GTCGTCCTCTTCCTCCAGC 59.486 63.158 0.00 0.00 0.00 4.85
1195 2628 0.968393 GTCGTCCTCTTCCTCCAGCT 60.968 60.000 0.00 0.00 0.00 4.24
1196 2629 0.681564 TCGTCCTCTTCCTCCAGCTC 60.682 60.000 0.00 0.00 0.00 4.09
1197 2630 1.671901 CGTCCTCTTCCTCCAGCTCC 61.672 65.000 0.00 0.00 0.00 4.70
1198 2631 0.616111 GTCCTCTTCCTCCAGCTCCA 60.616 60.000 0.00 0.00 0.00 3.86
1199 2632 0.325110 TCCTCTTCCTCCAGCTCCAG 60.325 60.000 0.00 0.00 0.00 3.86
1200 2633 1.521616 CTCTTCCTCCAGCTCCAGC 59.478 63.158 0.00 0.00 42.49 4.85
1230 2663 1.679336 CCTCAGCAGCAGAGCAAGATT 60.679 52.381 9.32 0.00 36.85 2.40
1239 2672 2.615912 GCAGAGCAAGATTATCACCCAC 59.384 50.000 0.00 0.00 0.00 4.61
1245 2678 2.780010 CAAGATTATCACCCACCTCCCT 59.220 50.000 0.00 0.00 0.00 4.20
1324 2760 2.951642 TGGCTTTCTCCACTTGACAAAG 59.048 45.455 0.00 0.00 39.49 2.77
1349 2794 6.754209 GTGATTGATTTATCTCTCGTGTGACT 59.246 38.462 0.00 0.00 0.00 3.41
1377 2952 1.588932 CGCATCACGTCGCAGGTAT 60.589 57.895 0.00 0.00 36.87 2.73
1473 3048 0.463204 CCGTCATGATCTGGCTGACT 59.537 55.000 0.00 0.00 37.68 3.41
1476 3051 1.209019 GTCATGATCTGGCTGACTGGT 59.791 52.381 0.00 0.00 37.04 4.00
1540 3115 4.107363 GGTAGGTAACCGAACTCTTCAG 57.893 50.000 0.00 0.00 38.88 3.02
1541 3116 2.745515 AGGTAACCGAACTCTTCAGC 57.254 50.000 0.00 0.00 37.17 4.26
1555 3130 0.250234 TTCAGCTCCAGAACCATCGG 59.750 55.000 0.00 0.00 0.00 4.18
1556 3131 0.904865 TCAGCTCCAGAACCATCGGT 60.905 55.000 0.00 0.00 37.65 4.69
1567 3142 0.175760 ACCATCGGTTCGTCTCCATG 59.824 55.000 0.00 0.00 27.29 3.66
1608 3184 0.958091 TTTTTGGGACCGTGCATCTG 59.042 50.000 0.00 0.00 0.00 2.90
1612 3188 1.783071 TGGGACCGTGCATCTGTATA 58.217 50.000 0.00 0.00 0.00 1.47
1614 3190 3.502356 TGGGACCGTGCATCTGTATATA 58.498 45.455 0.00 0.00 0.00 0.86
1617 3193 4.402793 GGGACCGTGCATCTGTATATATCT 59.597 45.833 0.00 0.00 0.00 1.98
1645 3222 6.103997 TCAAACTTTCCTATGTATCCACGAC 58.896 40.000 0.00 0.00 0.00 4.34
1657 3262 1.860676 TCCACGACAACTGCAACTAC 58.139 50.000 0.00 0.00 0.00 2.73
1663 3268 5.399858 CACGACAACTGCAACTACTACTAT 58.600 41.667 0.00 0.00 0.00 2.12
1707 3312 2.286418 CCTTCTGCGCGGAAAATATCAC 60.286 50.000 30.09 0.00 0.00 3.06
1716 3321 1.597663 GGAAAATATCACGTGCTCCCG 59.402 52.381 11.67 0.00 0.00 5.14
1730 3335 1.202188 GCTCCCGCACTTTAAATGCTC 60.202 52.381 15.72 0.00 41.10 4.26
1743 3351 2.170012 AATGCTCCCATGCTCCAAAT 57.830 45.000 0.00 0.00 0.00 2.32
1753 3361 6.463360 TCCCATGCTCCAAATTTCTAAAAAC 58.537 36.000 0.00 0.00 0.00 2.43
1806 3684 1.770658 TGGAAGATGGTAGCATGGGAG 59.229 52.381 13.10 0.00 0.00 4.30
1830 3708 1.222936 GAGTGATGGGAGCACTGGG 59.777 63.158 0.00 0.00 45.94 4.45
1840 3719 1.417890 GGAGCACTGGGTATGCACTAT 59.582 52.381 0.00 0.00 45.92 2.12
1847 3726 5.533482 CACTGGGTATGCACTATCTTCTAC 58.467 45.833 0.00 0.00 0.00 2.59
1848 3727 5.069119 CACTGGGTATGCACTATCTTCTACA 59.931 44.000 0.00 0.00 0.00 2.74
1865 3744 5.330455 TCTACATGTCTCGAAGCAAATCT 57.670 39.130 0.00 0.00 0.00 2.40
1870 3749 5.349817 ACATGTCTCGAAGCAAATCTACTTG 59.650 40.000 0.00 0.00 0.00 3.16
1878 3757 7.600065 TCGAAGCAAATCTACTTGTACTACTT 58.400 34.615 0.00 0.00 0.00 2.24
1879 3758 8.086522 TCGAAGCAAATCTACTTGTACTACTTT 58.913 33.333 0.00 0.00 0.00 2.66
1914 3794 6.594937 AGTTGAACATTTTGCAAAGACAATGT 59.405 30.769 17.49 17.49 40.75 2.71
1915 3795 7.763528 AGTTGAACATTTTGCAAAGACAATGTA 59.236 29.630 21.51 9.35 38.60 2.29
1939 3819 5.711976 ACTCATGTAGCACTAGCCAAAAATT 59.288 36.000 0.00 0.00 43.56 1.82
1941 3821 4.173036 TGTAGCACTAGCCAAAAATTGC 57.827 40.909 0.00 0.00 43.56 3.56
2014 3898 0.390472 CAGGCCCTCTGAGTTTCGAC 60.390 60.000 0.00 0.00 46.18 4.20
2041 3925 4.355925 GACGTCAACGGCTTTCCT 57.644 55.556 11.55 0.00 45.57 3.36
2085 3969 0.260230 TGGACCAAGGCAGGTTTCAA 59.740 50.000 3.06 0.00 43.38 2.69
2088 3972 1.546029 GACCAAGGCAGGTTTCAATCC 59.454 52.381 3.06 0.00 43.38 3.01
2091 3975 1.547372 CAAGGCAGGTTTCAATCCCAG 59.453 52.381 0.00 0.00 0.00 4.45
2093 3977 1.642762 AGGCAGGTTTCAATCCCAGAT 59.357 47.619 0.00 0.00 0.00 2.90
2094 3978 2.027385 GGCAGGTTTCAATCCCAGATC 58.973 52.381 0.00 0.00 0.00 2.75
2098 3982 4.347607 CAGGTTTCAATCCCAGATCCTTT 58.652 43.478 0.00 0.00 0.00 3.11
2110 3994 6.187682 TCCCAGATCCTTTTTCATTCTTACC 58.812 40.000 0.00 0.00 0.00 2.85
2131 4015 5.491070 ACCATTTTCATGATTCTGAGTCGA 58.509 37.500 0.00 0.00 31.07 4.20
2149 4033 1.202580 CGAACATGGATCCCTCTGTCC 60.203 57.143 9.90 0.00 35.02 4.02
2202 4086 1.301401 CGTTGGAACCGGCTTCTCA 60.301 57.895 0.00 2.97 0.00 3.27
2235 4119 4.397417 ACAGAGCAAGGATACAAATCAAGC 59.603 41.667 0.00 0.00 41.41 4.01
2294 4178 0.193574 AAGGTCCCACTTCCTCCTCA 59.806 55.000 0.00 0.00 33.09 3.86
2392 4277 1.070758 GAGCACCCAGAGTTCTTGTCA 59.929 52.381 0.00 0.00 0.00 3.58
2569 4454 2.235898 CCTAGGGATAGAAGATGGCAGC 59.764 54.545 0.00 0.00 0.00 5.25
2674 4566 8.487176 GCCTGTAGTACACAATTTTCAAATTTG 58.513 33.333 12.15 12.15 36.52 2.32
2744 4637 3.695830 TTGCCCACTGTAGTTCCTAAG 57.304 47.619 0.00 0.00 0.00 2.18
2818 4711 0.243636 GCAATTGCCAGCCGTAGTTT 59.756 50.000 20.06 0.00 34.31 2.66
2889 4782 2.504681 GTTCTGGCGGCATTTGCG 60.505 61.111 13.85 0.00 43.26 4.85
2890 4783 4.418401 TTCTGGCGGCATTTGCGC 62.418 61.111 13.85 0.00 43.26 6.09
2904 4797 1.534336 TTGCGCACCGTAGTTCCCTA 61.534 55.000 11.12 0.00 0.00 3.53
2907 4800 1.741394 GCGCACCGTAGTTCCCTAAAT 60.741 52.381 0.30 0.00 0.00 1.40
2908 4801 2.624636 CGCACCGTAGTTCCCTAAATT 58.375 47.619 0.00 0.00 0.00 1.82
2909 4802 3.004862 CGCACCGTAGTTCCCTAAATTT 58.995 45.455 0.00 0.00 0.00 1.82
2910 4803 3.437741 CGCACCGTAGTTCCCTAAATTTT 59.562 43.478 0.00 0.00 0.00 1.82
2911 4804 4.083164 CGCACCGTAGTTCCCTAAATTTTT 60.083 41.667 0.00 0.00 0.00 1.94
2948 4843 4.518278 TCTTCCCTGCTAATTTGGCATA 57.482 40.909 7.95 0.00 39.07 3.14
3000 4895 5.661312 TCCAGTCACAGCTTATTGGTACTAT 59.339 40.000 0.00 0.00 0.00 2.12
3033 4928 3.742433 AAAATTCCATTTGCACACGGA 57.258 38.095 0.00 0.00 31.77 4.69
3036 4931 3.742433 ATTCCATTTGCACACGGAAAA 57.258 38.095 4.27 0.00 40.75 2.29
3228 5134 3.938963 TCGTGTCTTGATTATTTCCAGGC 59.061 43.478 0.00 0.00 0.00 4.85
3229 5135 3.941483 CGTGTCTTGATTATTTCCAGGCT 59.059 43.478 0.00 0.00 0.00 4.58
3275 5181 0.322277 ATTCAGCCAGGAGTGCACAG 60.322 55.000 21.04 5.63 0.00 3.66
3283 5189 1.869767 CAGGAGTGCACAGAAAGTCAC 59.130 52.381 21.04 1.25 0.00 3.67
3321 5227 4.327087 GGTATCCAATTCTTTTGCAAAGCG 59.673 41.667 12.41 7.99 0.00 4.68
3342 5248 4.084900 GCGAAGTTTTGCCTTTCATTTCTG 60.085 41.667 0.00 0.00 0.00 3.02
3346 5252 4.067192 GTTTTGCCTTTCATTTCTGCCAT 58.933 39.130 0.00 0.00 0.00 4.40
3382 5288 7.538678 CAGTATCAGCCAAGTTGTATTTTTGTC 59.461 37.037 1.45 0.00 0.00 3.18
3586 5570 4.432712 ACAAATCAAACAGTGCTTCCAAC 58.567 39.130 0.00 0.00 0.00 3.77
3639 5623 7.223582 AGAGTACTTCATATTTCATTGCAGACG 59.776 37.037 0.00 0.00 0.00 4.18
3662 5646 2.413112 CGGAATATGCGATGTCCATGAC 59.587 50.000 0.00 0.00 30.86 3.06
3708 5692 2.503356 AGAGGCTCTTGGTATCCACAAG 59.497 50.000 12.24 0.00 45.08 3.16
3719 5703 4.223255 TGGTATCCACAAGGTAATTGACGA 59.777 41.667 0.00 0.00 41.83 4.20
3726 5710 5.390885 CCACAAGGTAATTGACGACTGAATG 60.391 44.000 0.00 0.00 41.83 2.67
3727 5711 5.408299 CACAAGGTAATTGACGACTGAATGA 59.592 40.000 0.00 0.00 41.83 2.57
3728 5712 5.995282 ACAAGGTAATTGACGACTGAATGAA 59.005 36.000 0.00 0.00 41.83 2.57
3729 5713 6.147821 ACAAGGTAATTGACGACTGAATGAAG 59.852 38.462 0.00 0.00 41.83 3.02
3730 5714 4.631813 AGGTAATTGACGACTGAATGAAGC 59.368 41.667 0.00 0.00 0.00 3.86
3731 5715 4.631813 GGTAATTGACGACTGAATGAAGCT 59.368 41.667 0.00 0.00 0.00 3.74
3732 5716 4.675190 AATTGACGACTGAATGAAGCTG 57.325 40.909 0.00 0.00 0.00 4.24
3733 5717 2.820059 TGACGACTGAATGAAGCTGT 57.180 45.000 0.00 0.00 0.00 4.40
3734 5718 2.677199 TGACGACTGAATGAAGCTGTC 58.323 47.619 0.00 0.00 0.00 3.51
3735 5719 2.297315 TGACGACTGAATGAAGCTGTCT 59.703 45.455 0.00 0.00 33.63 3.41
3736 5720 2.665537 GACGACTGAATGAAGCTGTCTG 59.334 50.000 0.00 0.00 33.63 3.51
3737 5721 2.036475 ACGACTGAATGAAGCTGTCTGT 59.964 45.455 0.00 0.00 33.63 3.41
3738 5722 2.411069 CGACTGAATGAAGCTGTCTGTG 59.589 50.000 0.00 0.00 33.63 3.66
3739 5723 3.397482 GACTGAATGAAGCTGTCTGTGT 58.603 45.455 0.00 0.00 33.21 3.72
3740 5724 3.812053 GACTGAATGAAGCTGTCTGTGTT 59.188 43.478 0.00 0.00 33.21 3.32
3741 5725 3.562973 ACTGAATGAAGCTGTCTGTGTTG 59.437 43.478 0.00 0.00 0.00 3.33
3742 5726 2.880268 TGAATGAAGCTGTCTGTGTTGG 59.120 45.455 0.00 0.00 0.00 3.77
3743 5727 2.936919 ATGAAGCTGTCTGTGTTGGA 57.063 45.000 0.00 0.00 0.00 3.53
3744 5728 1.953559 TGAAGCTGTCTGTGTTGGAC 58.046 50.000 0.00 0.00 0.00 4.02
3745 5729 1.209261 TGAAGCTGTCTGTGTTGGACA 59.791 47.619 0.00 0.00 40.78 4.02
3760 5744 1.312815 GGACACTCAGTTGCTGCTTT 58.687 50.000 0.00 0.00 0.00 3.51
3761 5745 2.158827 TGGACACTCAGTTGCTGCTTTA 60.159 45.455 0.00 0.00 0.00 1.85
3786 5774 4.487948 CATGTTTGGTGTGGTTGATCATC 58.512 43.478 0.00 0.00 0.00 2.92
3794 5782 7.135591 TGGTGTGGTTGATCATCATATTCTA 57.864 36.000 0.00 0.00 0.00 2.10
3842 5831 3.266510 TGGCTAAGATGCAACTTCGAT 57.733 42.857 13.02 0.00 34.04 3.59
4057 6046 0.038166 GGGTGAGGACTGATTTGCCA 59.962 55.000 0.00 0.00 0.00 4.92
4085 6078 2.107378 TGGGTGTTGCAACTGAATAGGA 59.893 45.455 28.61 4.49 0.00 2.94
4091 6084 4.184629 GTTGCAACTGAATAGGACGAGAT 58.815 43.478 22.36 0.00 0.00 2.75
4104 6097 3.261897 AGGACGAGATTTGTTCTGATGGT 59.738 43.478 0.00 0.00 33.74 3.55
4147 6140 5.221601 CCTCATGTGCAGATATACAAGGTCT 60.222 44.000 0.00 0.00 0.00 3.85
4153 6146 5.915758 GTGCAGATATACAAGGTCTTACTCG 59.084 44.000 0.00 0.00 0.00 4.18
4162 6155 6.356186 ACAAGGTCTTACTCGAATAACCTT 57.644 37.500 4.55 4.55 40.89 3.50
4184 6177 2.069273 CCTTCGCAACTGTCAAGGTAG 58.931 52.381 0.00 0.00 32.17 3.18
4190 6183 0.984995 AACTGTCAAGGTAGGCCCTC 59.015 55.000 0.00 0.00 45.47 4.30
4196 6189 0.179073 CAAGGTAGGCCCTCGATGTG 60.179 60.000 0.00 0.00 45.47 3.21
4211 6204 4.237724 TCGATGTGTTCTCTTTGCTACAG 58.762 43.478 0.00 0.00 0.00 2.74
4350 6343 4.263462 TGAGCCTCTTTGATGGTGTACATT 60.263 41.667 0.00 0.00 40.72 2.71
4356 6349 2.197283 TGATGGTGTACATTGCAGCA 57.803 45.000 0.00 0.00 46.28 4.41
4370 6363 2.034066 AGCATCCGGTGGTGGTTG 59.966 61.111 0.00 0.00 37.12 3.77
4373 6366 1.298340 CATCCGGTGGTGGTTGCTA 59.702 57.895 0.00 0.00 0.00 3.49
4384 6377 2.617788 GGTGGTTGCTATGTCCATCACA 60.618 50.000 0.00 0.00 40.18 3.58
4385 6378 2.420022 GTGGTTGCTATGTCCATCACAC 59.580 50.000 0.00 0.00 38.04 3.82
4391 6384 5.357742 TGCTATGTCCATCACACTGTAAT 57.642 39.130 0.00 0.00 38.04 1.89
4393 6386 5.585844 TGCTATGTCCATCACACTGTAATTG 59.414 40.000 0.00 0.00 38.04 2.32
4402 6395 5.512753 TCACACTGTAATTGCATTGTGTT 57.487 34.783 31.27 12.73 44.81 3.32
4404 6397 6.667370 TCACACTGTAATTGCATTGTGTTAG 58.333 36.000 31.27 17.32 44.81 2.34
4447 6440 7.023575 AGCAATAGTTGTTAAAGCTTGATTCG 58.976 34.615 0.00 0.00 0.00 3.34
4489 6482 8.892723 GTTCTGTTCAATGTATCAATGTATGGA 58.107 33.333 0.00 0.00 0.00 3.41
4490 6483 9.460019 TTCTGTTCAATGTATCAATGTATGGAA 57.540 29.630 0.00 0.00 0.00 3.53
4554 6603 0.458260 GCAGAAAAACGTTGGTGGGT 59.542 50.000 0.00 0.00 0.00 4.51
4574 6623 1.844289 TGCTTCGGTACACCCCCTT 60.844 57.895 0.00 0.00 0.00 3.95
4616 6665 8.863872 AGCAGTACAAACAAAAACCTATAGAT 57.136 30.769 0.00 0.00 0.00 1.98
4618 6667 7.903431 GCAGTACAAACAAAAACCTATAGATCG 59.097 37.037 0.00 0.00 0.00 3.69
4619 6668 9.146984 CAGTACAAACAAAAACCTATAGATCGA 57.853 33.333 0.00 0.00 0.00 3.59
4620 6669 9.148104 AGTACAAACAAAAACCTATAGATCGAC 57.852 33.333 0.00 0.00 0.00 4.20
4621 6670 9.148104 GTACAAACAAAAACCTATAGATCGACT 57.852 33.333 0.00 0.00 0.00 4.18
4663 6712 4.282496 AGATAAGACTCCATCCAACGACT 58.718 43.478 0.00 0.00 0.00 4.18
4741 6790 0.393077 AATATTCCTCTCACCCCGCG 59.607 55.000 0.00 0.00 0.00 6.46
4795 6844 5.531122 TTATCCTTGGTGAGGTAGATTCG 57.469 43.478 0.00 0.00 46.39 3.34
4803 6852 4.639310 TGGTGAGGTAGATTCGTCTAAGTC 59.361 45.833 0.00 0.00 0.00 3.01
4804 6853 4.036616 GGTGAGGTAGATTCGTCTAAGTCC 59.963 50.000 0.00 0.00 0.00 3.85
4806 6855 4.882427 TGAGGTAGATTCGTCTAAGTCCTG 59.118 45.833 0.00 0.00 0.00 3.86
4813 6862 2.619147 TCGTCTAAGTCCTGTCTCTCG 58.381 52.381 0.00 0.00 0.00 4.04
4818 6867 4.694509 GTCTAAGTCCTGTCTCTCGTACAA 59.305 45.833 0.00 0.00 0.00 2.41
4819 6868 5.354792 GTCTAAGTCCTGTCTCTCGTACAAT 59.645 44.000 0.00 0.00 0.00 2.71
4820 6869 4.705337 AAGTCCTGTCTCTCGTACAATC 57.295 45.455 0.00 0.00 0.00 2.67
4867 6922 8.982091 AGTATCTAGTAAATGTGCACTCTAGA 57.018 34.615 19.41 22.12 38.36 2.43
4868 6923 9.581289 AGTATCTAGTAAATGTGCACTCTAGAT 57.419 33.333 28.35 28.35 43.24 1.98
4872 6927 9.800572 TCTAGTAAATGTGCACTCTAGATATCT 57.199 33.333 19.41 10.73 32.12 1.98
4874 6929 7.589395 AGTAAATGTGCACTCTAGATATCTCG 58.411 38.462 19.41 2.79 0.00 4.04
4875 6930 6.641169 AAATGTGCACTCTAGATATCTCGA 57.359 37.500 19.41 7.68 0.00 4.04
4876 6931 5.621197 ATGTGCACTCTAGATATCTCGAC 57.379 43.478 19.41 0.00 0.00 4.20
4877 6932 4.451900 TGTGCACTCTAGATATCTCGACA 58.548 43.478 19.41 0.39 0.00 4.35
4878 6933 4.881850 TGTGCACTCTAGATATCTCGACAA 59.118 41.667 19.41 0.00 0.00 3.18
4879 6934 5.357032 TGTGCACTCTAGATATCTCGACAAA 59.643 40.000 19.41 0.00 0.00 2.83
4880 6935 5.912396 GTGCACTCTAGATATCTCGACAAAG 59.088 44.000 8.95 0.00 0.00 2.77
4881 6936 5.590663 TGCACTCTAGATATCTCGACAAAGT 59.409 40.000 8.95 0.00 0.00 2.66
4882 6937 6.095580 TGCACTCTAGATATCTCGACAAAGTT 59.904 38.462 8.95 0.00 0.00 2.66
4883 6938 6.416455 GCACTCTAGATATCTCGACAAAGTTG 59.584 42.308 8.95 3.81 0.00 3.16
4884 6939 7.476667 CACTCTAGATATCTCGACAAAGTTGT 58.523 38.462 8.95 0.00 45.65 3.32
4885 6940 8.613482 CACTCTAGATATCTCGACAAAGTTGTA 58.387 37.037 8.95 0.00 42.43 2.41
4886 6941 9.175312 ACTCTAGATATCTCGACAAAGTTGTAA 57.825 33.333 8.95 0.00 42.43 2.41
4887 6942 9.440784 CTCTAGATATCTCGACAAAGTTGTAAC 57.559 37.037 8.95 0.00 42.43 2.50
4888 6943 8.953313 TCTAGATATCTCGACAAAGTTGTAACA 58.047 33.333 8.95 0.00 42.43 2.41
4889 6944 9.569167 CTAGATATCTCGACAAAGTTGTAACAA 57.431 33.333 8.95 0.00 42.43 2.83
4890 6945 8.827177 AGATATCTCGACAAAGTTGTAACAAA 57.173 30.769 0.00 0.00 42.43 2.83
4891 6946 9.268268 AGATATCTCGACAAAGTTGTAACAAAA 57.732 29.630 0.00 0.00 42.43 2.44
4892 6947 9.872757 GATATCTCGACAAAGTTGTAACAAAAA 57.127 29.630 0.00 0.00 42.43 1.94
4926 6981 8.515695 TCTCGACAAAGATAACTAAGGATACA 57.484 34.615 0.00 0.00 41.41 2.29
4927 6982 9.132923 TCTCGACAAAGATAACTAAGGATACAT 57.867 33.333 0.00 0.00 41.41 2.29
4941 7000 7.889073 ACTAAGGATACATAGACACGACCATAT 59.111 37.037 0.00 0.00 40.30 1.78
5054 7116 3.502211 CCAAAATTTCGAGGTGTAGTGCT 59.498 43.478 0.00 0.00 0.00 4.40
5062 7124 5.856126 TCGAGGTGTAGTGCTTTAAAATG 57.144 39.130 0.00 0.00 0.00 2.32
5068 7130 9.476202 GAGGTGTAGTGCTTTAAAATGAAAAAT 57.524 29.630 0.00 0.00 0.00 1.82
5083 7145 8.466086 AAATGAAAAATAATCGGCTTCACTTC 57.534 30.769 0.00 0.00 0.00 3.01
5084 7146 5.949735 TGAAAAATAATCGGCTTCACTTCC 58.050 37.500 0.00 0.00 0.00 3.46
5188 7250 8.176365 TGCCAAATGTAATACGTAAATGTACAC 58.824 33.333 0.00 0.00 0.00 2.90
5308 7371 7.138736 AGAATTTTGAGTTGGTTAACGTGATG 58.861 34.615 0.00 0.00 41.71 3.07
5326 7389 9.706691 AACGTGATGTATTACCCATCTAATAAG 57.293 33.333 0.00 0.00 39.54 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 8.212495 GCGTAACGTTGGATTTGTATTCTATAG 58.788 37.037 11.99 0.00 0.00 1.31
62 63 5.015733 GTGAGCGATTTTGATTGTACTTCG 58.984 41.667 0.00 0.00 0.00 3.79
64 65 5.940192 TGTGAGCGATTTTGATTGTACTT 57.060 34.783 0.00 0.00 0.00 2.24
69 70 5.872635 AGTGTATGTGAGCGATTTTGATTG 58.127 37.500 0.00 0.00 0.00 2.67
95 96 2.283298 ACTTGCGTGCATTCATAGAGG 58.717 47.619 0.00 0.00 0.00 3.69
98 99 3.242413 GGTGTACTTGCGTGCATTCATAG 60.242 47.826 0.00 0.00 38.04 2.23
101 102 0.871722 GGTGTACTTGCGTGCATTCA 59.128 50.000 0.00 0.00 38.04 2.57
102 103 0.168128 GGGTGTACTTGCGTGCATTC 59.832 55.000 0.00 0.00 38.04 2.67
104 105 0.611200 TAGGGTGTACTTGCGTGCAT 59.389 50.000 0.00 0.00 38.04 3.96
141 142 0.747255 TAATGCCGGCTCAGTCTCTC 59.253 55.000 29.70 0.00 0.00 3.20
159 160 7.742963 GCGACTTCGTAAAATCTCAAAATGTTA 59.257 33.333 0.00 0.00 42.22 2.41
168 169 5.961395 TTATGGCGACTTCGTAAAATCTC 57.039 39.130 0.00 0.00 42.22 2.75
185 186 3.382546 CCTTGATTGTGAGGCCTTTATGG 59.617 47.826 6.77 0.00 39.35 2.74
204 205 3.433306 TCGATGATGTTTGTTCCCCTT 57.567 42.857 0.00 0.00 0.00 3.95
213 214 5.649782 ATTTCAGGCTTTCGATGATGTTT 57.350 34.783 0.00 0.00 0.00 2.83
230 231 6.823182 TCTCGCATTCTCCTGAATTTATTTCA 59.177 34.615 0.00 0.00 40.61 2.69
236 237 3.691609 GGTTCTCGCATTCTCCTGAATTT 59.308 43.478 0.00 0.00 40.61 1.82
246 247 4.631813 AGACTTACATTGGTTCTCGCATTC 59.368 41.667 0.00 0.00 0.00 2.67
248 249 4.207891 AGACTTACATTGGTTCTCGCAT 57.792 40.909 0.00 0.00 0.00 4.73
251 252 5.341617 GTCCTAGACTTACATTGGTTCTCG 58.658 45.833 0.00 0.00 0.00 4.04
283 284 1.485066 AGTGGTATCTTTAGCCCACCG 59.515 52.381 4.15 0.00 46.84 4.94
299 300 2.571653 TGAATGGTTAGAGGGACAGTGG 59.428 50.000 0.00 0.00 0.00 4.00
352 354 8.172484 CGTACCATTGAATTTGTATTCGAAAGA 58.828 33.333 0.00 0.00 42.55 2.52
353 355 7.960738 ACGTACCATTGAATTTGTATTCGAAAG 59.039 33.333 0.00 0.00 42.55 2.62
354 356 7.808672 ACGTACCATTGAATTTGTATTCGAAA 58.191 30.769 0.00 0.00 42.55 3.46
356 358 6.971527 ACGTACCATTGAATTTGTATTCGA 57.028 33.333 0.00 0.00 42.55 3.71
362 364 9.832445 AGAGATTATACGTACCATTGAATTTGT 57.168 29.630 0.00 0.00 0.00 2.83
367 369 9.309516 GTGAAAGAGATTATACGTACCATTGAA 57.690 33.333 0.00 0.00 0.00 2.69
383 385 9.574516 GGGTGGTTAATTATATGTGAAAGAGAT 57.425 33.333 0.00 0.00 0.00 2.75
384 386 8.778059 AGGGTGGTTAATTATATGTGAAAGAGA 58.222 33.333 0.00 0.00 0.00 3.10
385 387 8.980481 AGGGTGGTTAATTATATGTGAAAGAG 57.020 34.615 0.00 0.00 0.00 2.85
393 395 9.227777 GGCTAACTAAGGGTGGTTAATTATATG 57.772 37.037 0.00 0.00 31.10 1.78
396 398 7.461633 AGGCTAACTAAGGGTGGTTAATTAT 57.538 36.000 0.00 0.00 31.10 1.28
397 399 6.896452 AGGCTAACTAAGGGTGGTTAATTA 57.104 37.500 0.00 0.00 31.10 1.40
398 400 5.791303 AGGCTAACTAAGGGTGGTTAATT 57.209 39.130 0.00 0.00 31.10 1.40
399 401 6.896452 TTAGGCTAACTAAGGGTGGTTAAT 57.104 37.500 2.04 0.00 36.76 1.40
400 402 6.896452 ATTAGGCTAACTAAGGGTGGTTAA 57.104 37.500 9.55 0.00 44.43 2.01
401 403 6.896452 AATTAGGCTAACTAAGGGTGGTTA 57.104 37.500 9.55 0.00 44.43 2.85
403 405 5.791303 AAATTAGGCTAACTAAGGGTGGT 57.209 39.130 9.55 0.00 44.43 4.16
404 406 6.715264 CCATAAATTAGGCTAACTAAGGGTGG 59.285 42.308 9.55 8.01 44.43 4.61
405 407 7.287810 ACCATAAATTAGGCTAACTAAGGGTG 58.712 38.462 9.55 3.03 44.43 4.61
406 408 7.128263 TGACCATAAATTAGGCTAACTAAGGGT 59.872 37.037 16.21 16.21 44.43 4.34
407 409 7.514721 TGACCATAAATTAGGCTAACTAAGGG 58.485 38.462 9.55 10.78 44.43 3.95
408 410 8.974060 TTGACCATAAATTAGGCTAACTAAGG 57.026 34.615 9.55 12.30 44.43 2.69
410 412 9.914834 ACATTGACCATAAATTAGGCTAACTAA 57.085 29.630 9.55 0.00 45.24 2.24
411 413 9.914834 AACATTGACCATAAATTAGGCTAACTA 57.085 29.630 9.55 4.82 0.00 2.24
412 414 8.823220 AACATTGACCATAAATTAGGCTAACT 57.177 30.769 9.55 0.00 0.00 2.24
426 428 9.064706 TGCATTTCAAAATTAAACATTGACCAT 57.935 25.926 0.00 0.00 33.13 3.55
427 429 8.442632 TGCATTTCAAAATTAAACATTGACCA 57.557 26.923 0.00 0.00 33.13 4.02
428 430 9.332301 CATGCATTTCAAAATTAAACATTGACC 57.668 29.630 0.00 0.00 33.13 4.02
429 431 8.842777 GCATGCATTTCAAAATTAAACATTGAC 58.157 29.630 14.21 0.00 33.13 3.18
430 432 8.565416 TGCATGCATTTCAAAATTAAACATTGA 58.435 25.926 18.46 0.00 0.00 2.57
432 434 8.350722 TGTGCATGCATTTCAAAATTAAACATT 58.649 25.926 25.64 0.00 0.00 2.71
433 435 7.804129 GTGTGCATGCATTTCAAAATTAAACAT 59.196 29.630 25.64 0.00 0.00 2.71
434 436 7.130917 GTGTGCATGCATTTCAAAATTAAACA 58.869 30.769 25.64 8.73 0.00 2.83
435 437 6.578172 GGTGTGCATGCATTTCAAAATTAAAC 59.422 34.615 25.64 5.93 0.00 2.01
436 438 6.485984 AGGTGTGCATGCATTTCAAAATTAAA 59.514 30.769 25.64 0.00 0.00 1.52
437 439 5.996513 AGGTGTGCATGCATTTCAAAATTAA 59.003 32.000 25.64 0.00 0.00 1.40
438 440 5.549347 AGGTGTGCATGCATTTCAAAATTA 58.451 33.333 25.64 0.00 0.00 1.40
439 441 4.391155 AGGTGTGCATGCATTTCAAAATT 58.609 34.783 25.64 1.24 0.00 1.82
440 442 4.010667 AGGTGTGCATGCATTTCAAAAT 57.989 36.364 25.64 3.94 0.00 1.82
441 443 3.472283 AGGTGTGCATGCATTTCAAAA 57.528 38.095 25.64 1.03 0.00 2.44
442 444 3.472283 AAGGTGTGCATGCATTTCAAA 57.528 38.095 25.64 2.88 0.00 2.69
443 445 4.804868 ATAAGGTGTGCATGCATTTCAA 57.195 36.364 25.64 8.79 0.00 2.69
444 446 4.804868 AATAAGGTGTGCATGCATTTCA 57.195 36.364 25.64 14.75 0.00 2.69
445 447 7.254522 CCAATAAATAAGGTGTGCATGCATTTC 60.255 37.037 25.64 16.24 0.00 2.17
446 448 6.539464 CCAATAAATAAGGTGTGCATGCATTT 59.461 34.615 25.64 19.38 0.00 2.32
448 450 5.363292 TCCAATAAATAAGGTGTGCATGCAT 59.637 36.000 25.64 10.06 0.00 3.96
450 452 5.261209 TCCAATAAATAAGGTGTGCATGC 57.739 39.130 11.82 11.82 0.00 4.06
451 453 6.702723 CCATTCCAATAAATAAGGTGTGCATG 59.297 38.462 0.00 0.00 0.00 4.06
454 456 6.461509 CCTCCATTCCAATAAATAAGGTGTGC 60.462 42.308 0.00 0.00 0.00 4.57
457 459 6.372931 TCCCTCCATTCCAATAAATAAGGTG 58.627 40.000 0.00 0.00 0.00 4.00
458 460 6.162241 ACTCCCTCCATTCCAATAAATAAGGT 59.838 38.462 0.00 0.00 0.00 3.50
460 462 9.813826 AATACTCCCTCCATTCCAATAAATAAG 57.186 33.333 0.00 0.00 0.00 1.73
464 466 7.073725 AGCTAATACTCCCTCCATTCCAATAAA 59.926 37.037 0.00 0.00 0.00 1.40
465 467 6.562608 AGCTAATACTCCCTCCATTCCAATAA 59.437 38.462 0.00 0.00 0.00 1.40
466 468 6.091555 AGCTAATACTCCCTCCATTCCAATA 58.908 40.000 0.00 0.00 0.00 1.90
467 469 4.916424 AGCTAATACTCCCTCCATTCCAAT 59.084 41.667 0.00 0.00 0.00 3.16
468 470 4.307259 AGCTAATACTCCCTCCATTCCAA 58.693 43.478 0.00 0.00 0.00 3.53
469 471 3.941629 AGCTAATACTCCCTCCATTCCA 58.058 45.455 0.00 0.00 0.00 3.53
471 473 6.919775 TCTTAGCTAATACTCCCTCCATTC 57.080 41.667 6.64 0.00 0.00 2.67
473 475 8.974292 TTATTCTTAGCTAATACTCCCTCCAT 57.026 34.615 6.64 0.00 0.00 3.41
474 476 8.792830 TTTATTCTTAGCTAATACTCCCTCCA 57.207 34.615 6.64 0.00 0.00 3.86
487 489 9.542462 TCGTGTATGCTATTTTTATTCTTAGCT 57.458 29.630 0.00 0.00 38.28 3.32
488 490 9.798885 CTCGTGTATGCTATTTTTATTCTTAGC 57.201 33.333 0.00 0.00 38.01 3.09
490 492 9.826574 ACCTCGTGTATGCTATTTTTATTCTTA 57.173 29.630 0.00 0.00 0.00 2.10
492 494 8.732746 AACCTCGTGTATGCTATTTTTATTCT 57.267 30.769 0.00 0.00 0.00 2.40
493 495 9.434559 GAAACCTCGTGTATGCTATTTTTATTC 57.565 33.333 0.00 0.00 0.00 1.75
495 497 7.493320 TCGAAACCTCGTGTATGCTATTTTTAT 59.507 33.333 0.00 0.00 45.62 1.40
496 498 6.812656 TCGAAACCTCGTGTATGCTATTTTTA 59.187 34.615 0.00 0.00 45.62 1.52
499 501 4.751060 TCGAAACCTCGTGTATGCTATTT 58.249 39.130 0.00 0.00 45.62 1.40
500 502 4.380841 TCGAAACCTCGTGTATGCTATT 57.619 40.909 0.00 0.00 45.62 1.73
501 503 4.380841 TTCGAAACCTCGTGTATGCTAT 57.619 40.909 0.00 0.00 45.62 2.97
502 504 3.853831 TTCGAAACCTCGTGTATGCTA 57.146 42.857 0.00 0.00 45.62 3.49
528 530 9.767228 TCCCAGATTATCGTATTTTTATCGAAA 57.233 29.630 0.00 0.00 37.16 3.46
529 531 9.767228 TTCCCAGATTATCGTATTTTTATCGAA 57.233 29.630 0.00 0.00 37.16 3.71
530 532 9.199982 GTTCCCAGATTATCGTATTTTTATCGA 57.800 33.333 0.00 0.00 37.96 3.59
531 533 9.204570 AGTTCCCAGATTATCGTATTTTTATCG 57.795 33.333 0.00 0.00 0.00 2.92
534 536 9.485206 GCTAGTTCCCAGATTATCGTATTTTTA 57.515 33.333 0.00 0.00 0.00 1.52
535 537 8.211629 AGCTAGTTCCCAGATTATCGTATTTTT 58.788 33.333 0.00 0.00 0.00 1.94
536 538 7.736893 AGCTAGTTCCCAGATTATCGTATTTT 58.263 34.615 0.00 0.00 0.00 1.82
538 540 6.919775 AGCTAGTTCCCAGATTATCGTATT 57.080 37.500 0.00 0.00 0.00 1.89
539 541 6.603997 CCTAGCTAGTTCCCAGATTATCGTAT 59.396 42.308 19.31 0.00 0.00 3.06
542 544 4.767928 ACCTAGCTAGTTCCCAGATTATCG 59.232 45.833 19.31 1.59 0.00 2.92
543 545 6.720288 TGTACCTAGCTAGTTCCCAGATTATC 59.280 42.308 19.31 0.00 0.00 1.75
545 547 6.022107 TGTACCTAGCTAGTTCCCAGATTA 57.978 41.667 19.31 0.00 0.00 1.75
548 550 3.526430 TCTGTACCTAGCTAGTTCCCAGA 59.474 47.826 19.31 18.68 0.00 3.86
550 552 4.079385 TGATCTGTACCTAGCTAGTTCCCA 60.079 45.833 19.31 9.20 0.00 4.37
551 553 4.471548 TGATCTGTACCTAGCTAGTTCCC 58.528 47.826 19.31 5.20 0.00 3.97
552 554 7.948034 ATATGATCTGTACCTAGCTAGTTCC 57.052 40.000 19.31 6.88 0.00 3.62
566 568 9.684448 CATCGTGAAGTACTTTATATGATCTGT 57.316 33.333 10.02 0.00 0.00 3.41
567 569 9.899226 TCATCGTGAAGTACTTTATATGATCTG 57.101 33.333 10.02 7.10 0.00 2.90
617 1832 6.035843 TCGTACAAAAGTTGATACCGATACC 58.964 40.000 0.00 0.00 0.00 2.73
621 1836 7.598118 TGTTAATCGTACAAAAGTTGATACCGA 59.402 33.333 0.00 0.00 0.00 4.69
623 1838 8.497554 TGTGTTAATCGTACAAAAGTTGATACC 58.502 33.333 0.00 0.00 0.00 2.73
627 2038 7.976826 AGTTGTGTTAATCGTACAAAAGTTGA 58.023 30.769 0.00 0.00 36.23 3.18
630 2041 7.781548 AGAGTTGTGTTAATCGTACAAAAGT 57.218 32.000 0.00 0.00 36.23 2.66
681 2092 6.277605 TGGTTTACGTATGATCGATGATGTT 58.722 36.000 0.54 0.00 34.70 2.71
685 2096 4.037565 AGCTGGTTTACGTATGATCGATGA 59.962 41.667 0.54 0.00 34.70 2.92
686 2097 4.148871 CAGCTGGTTTACGTATGATCGATG 59.851 45.833 0.54 0.00 34.70 3.84
687 2098 4.202121 ACAGCTGGTTTACGTATGATCGAT 60.202 41.667 19.93 0.00 34.70 3.59
688 2099 3.129813 ACAGCTGGTTTACGTATGATCGA 59.870 43.478 19.93 0.00 34.70 3.59
689 2100 3.444916 ACAGCTGGTTTACGTATGATCG 58.555 45.455 19.93 0.00 0.00 3.69
690 2101 5.828747 TCTACAGCTGGTTTACGTATGATC 58.171 41.667 19.93 0.00 0.00 2.92
691 2102 5.847111 TCTACAGCTGGTTTACGTATGAT 57.153 39.130 19.93 0.00 0.00 2.45
692 2103 5.648178 TTCTACAGCTGGTTTACGTATGA 57.352 39.130 19.93 0.00 0.00 2.15
743 2161 0.171455 ACGTAGCTTTGCTCGAGAGG 59.829 55.000 18.75 1.14 40.44 3.69
747 2165 1.201998 CGTAGACGTAGCTTTGCTCGA 60.202 52.381 14.50 0.00 40.44 4.04
786 2205 2.877097 TCCTGCCACATCAGCTTAAA 57.123 45.000 0.00 0.00 32.87 1.52
806 2225 5.249163 CCTTTCCCTTCCTTTTCCAATCAAT 59.751 40.000 0.00 0.00 0.00 2.57
816 2235 1.469708 GGCCCCTTTCCCTTCCTTT 59.530 57.895 0.00 0.00 0.00 3.11
909 2338 8.804204 AGGAACTAGACGAAGATAAAGAAAGAA 58.196 33.333 0.00 0.00 36.02 2.52
913 2342 7.893658 ACAAGGAACTAGACGAAGATAAAGAA 58.106 34.615 0.00 0.00 38.49 2.52
933 2362 4.214332 CGGAAGGAAGAAGAAAGAACAAGG 59.786 45.833 0.00 0.00 0.00 3.61
1141 2574 1.757699 GGCAGAGGGTAGAAGAACGAT 59.242 52.381 0.00 0.00 0.00 3.73
1144 2577 0.460459 GCGGCAGAGGGTAGAAGAAC 60.460 60.000 0.00 0.00 0.00 3.01
1149 2582 2.058595 GGAAGCGGCAGAGGGTAGA 61.059 63.158 1.45 0.00 0.00 2.59
1167 2600 0.237761 AAGAGGACGACGACGACAAG 59.762 55.000 15.32 0.00 42.66 3.16
1169 2602 1.572085 GGAAGAGGACGACGACGACA 61.572 60.000 15.32 0.00 42.66 4.35
1173 2606 0.959372 TGGAGGAAGAGGACGACGAC 60.959 60.000 0.00 0.00 0.00 4.34
1176 2609 0.968393 AGCTGGAGGAAGAGGACGAC 60.968 60.000 0.00 0.00 0.00 4.34
1179 2612 0.616111 TGGAGCTGGAGGAAGAGGAC 60.616 60.000 0.00 0.00 0.00 3.85
1199 2632 2.124778 GCTGAGGGGAGCTGAAGC 60.125 66.667 0.00 0.00 42.49 3.86
1200 2633 1.221293 CTGCTGAGGGGAGCTGAAG 59.779 63.158 0.00 0.00 39.58 3.02
1201 2634 3.396767 CTGCTGAGGGGAGCTGAA 58.603 61.111 0.00 0.00 39.58 3.02
1211 2644 1.740297 AATCTTGCTCTGCTGCTGAG 58.260 50.000 26.34 26.34 33.52 3.35
1214 2647 3.204526 GTGATAATCTTGCTCTGCTGCT 58.795 45.455 0.00 0.00 0.00 4.24
1230 2663 1.692749 GCCAGGGAGGTGGGTGATA 60.693 63.158 0.00 0.00 40.61 2.15
1239 2672 4.148825 CCGTCGAAGCCAGGGAGG 62.149 72.222 0.00 0.00 41.84 4.30
1324 2760 6.754209 AGTCACACGAGAGATAAATCAATCAC 59.246 38.462 0.00 0.00 0.00 3.06
1337 2773 1.788258 ACATGCAAGTCACACGAGAG 58.212 50.000 0.00 0.00 0.00 3.20
1349 2794 1.592543 GACGTGATGCGATACATGCAA 59.407 47.619 0.00 0.00 46.87 4.08
1377 2952 2.333417 GCTCTCGTCCACCTCGACA 61.333 63.158 0.00 0.00 33.71 4.35
1447 3022 0.105593 CAGATCATGACGGGGTCCTG 59.894 60.000 0.00 0.00 31.22 3.86
1555 3130 0.992802 GAAGACGCATGGAGACGAAC 59.007 55.000 0.00 0.00 0.00 3.95
1556 3131 0.888619 AGAAGACGCATGGAGACGAA 59.111 50.000 0.00 0.00 0.00 3.85
1567 3142 5.363979 AATGGAAGAGAAAAAGAAGACGC 57.636 39.130 0.00 0.00 0.00 5.19
1593 3169 1.783071 TATACAGATGCACGGTCCCA 58.217 50.000 0.00 0.00 0.00 4.37
1614 3190 9.566432 GGATACATAGGAAAGTTTGATTGAGAT 57.434 33.333 0.00 0.00 0.00 2.75
1645 3222 5.288712 CACCGAATAGTAGTAGTTGCAGTTG 59.711 44.000 0.00 0.00 0.00 3.16
1657 3262 3.596214 ACAAAGCCACACCGAATAGTAG 58.404 45.455 0.00 0.00 0.00 2.57
1663 3268 1.890041 CGGACAAAGCCACACCGAA 60.890 57.895 0.00 0.00 45.31 4.30
1695 3300 1.597663 GGGAGCACGTGATATTTTCCG 59.402 52.381 22.23 0.00 0.00 4.30
1716 3321 2.167075 AGCATGGGAGCATTTAAAGTGC 59.833 45.455 12.09 12.09 42.81 4.40
1730 3335 6.466812 AGTTTTTAGAAATTTGGAGCATGGG 58.533 36.000 0.00 0.00 0.00 4.00
1775 3383 8.415950 TGCTACCATCTTCCAAAAGAAAATTA 57.584 30.769 0.00 0.00 44.49 1.40
1778 3386 6.295236 CCATGCTACCATCTTCCAAAAGAAAA 60.295 38.462 0.00 0.00 44.49 2.29
1779 3387 5.185635 CCATGCTACCATCTTCCAAAAGAAA 59.814 40.000 0.00 0.00 44.49 2.52
1780 3388 4.706476 CCATGCTACCATCTTCCAAAAGAA 59.294 41.667 0.00 0.00 44.49 2.52
1782 3390 3.382546 CCCATGCTACCATCTTCCAAAAG 59.617 47.826 0.00 0.00 0.00 2.27
1783 3391 3.011144 TCCCATGCTACCATCTTCCAAAA 59.989 43.478 0.00 0.00 0.00 2.44
1787 3395 1.544314 GCTCCCATGCTACCATCTTCC 60.544 57.143 0.00 0.00 0.00 3.46
1788 3396 1.141657 TGCTCCCATGCTACCATCTTC 59.858 52.381 0.00 0.00 0.00 2.87
1789 3397 1.216064 TGCTCCCATGCTACCATCTT 58.784 50.000 0.00 0.00 0.00 2.40
1790 3398 1.442773 ATGCTCCCATGCTACCATCT 58.557 50.000 0.00 0.00 0.00 2.90
1792 3400 2.091720 TCAAATGCTCCCATGCTACCAT 60.092 45.455 0.00 0.00 0.00 3.55
1793 3401 1.284491 TCAAATGCTCCCATGCTACCA 59.716 47.619 0.00 0.00 0.00 3.25
1806 3684 1.133790 GTGCTCCCATCACTCAAATGC 59.866 52.381 0.00 0.00 0.00 3.56
1830 3708 6.799441 CGAGACATGTAGAAGATAGTGCATAC 59.201 42.308 0.00 0.00 0.00 2.39
1840 3719 4.783764 TTGCTTCGAGACATGTAGAAGA 57.216 40.909 27.97 16.90 41.73 2.87
1847 3726 5.349817 ACAAGTAGATTTGCTTCGAGACATG 59.650 40.000 0.00 0.00 0.00 3.21
1848 3727 5.482908 ACAAGTAGATTTGCTTCGAGACAT 58.517 37.500 0.00 0.00 0.00 3.06
1865 3744 8.867097 ACTCTCCATCAAAAAGTAGTACAAGTA 58.133 33.333 2.52 0.00 0.00 2.24
1870 3749 8.496751 GTTCAACTCTCCATCAAAAAGTAGTAC 58.503 37.037 0.00 0.00 0.00 2.73
1878 3757 6.479660 GCAAAATGTTCAACTCTCCATCAAAA 59.520 34.615 0.00 0.00 0.00 2.44
1879 3758 5.984926 GCAAAATGTTCAACTCTCCATCAAA 59.015 36.000 0.00 0.00 0.00 2.69
1914 3794 5.414789 TTTTGGCTAGTGCTACATGAGTA 57.585 39.130 0.00 0.00 39.59 2.59
1915 3795 3.981071 TTTGGCTAGTGCTACATGAGT 57.019 42.857 0.00 0.00 39.59 3.41
1991 3871 2.738213 AAACTCAGAGGGCCTGCACG 62.738 60.000 12.95 0.00 42.62 5.34
2032 3916 2.100605 AGAGCAACTTAGGAAAGCCG 57.899 50.000 0.00 0.00 39.96 5.52
2041 3925 5.069914 TGAGTCTGGTTTGTAGAGCAACTTA 59.930 40.000 0.00 0.00 36.72 2.24
2085 3969 6.836007 GGTAAGAATGAAAAAGGATCTGGGAT 59.164 38.462 0.00 0.00 0.00 3.85
2088 3972 7.651027 ATGGTAAGAATGAAAAAGGATCTGG 57.349 36.000 0.00 0.00 0.00 3.86
2091 3975 9.927668 TGAAAATGGTAAGAATGAAAAAGGATC 57.072 29.630 0.00 0.00 0.00 3.36
2093 3977 9.709495 CATGAAAATGGTAAGAATGAAAAAGGA 57.291 29.630 0.00 0.00 0.00 3.36
2094 3978 9.709495 TCATGAAAATGGTAAGAATGAAAAAGG 57.291 29.630 0.00 0.00 0.00 3.11
2110 3994 6.834876 TGTTCGACTCAGAATCATGAAAATG 58.165 36.000 0.00 0.00 32.25 2.32
2131 4015 1.216990 GGGACAGAGGGATCCATGTT 58.783 55.000 15.23 0.00 36.65 2.71
2149 4033 2.374504 AGATGATATTGCTCACCTGGGG 59.625 50.000 0.00 0.00 0.00 4.96
2202 4086 4.640771 TCCTTGCTCTGTTTTGGAGTAT 57.359 40.909 0.00 0.00 33.73 2.12
2235 4119 0.179119 GGGTGACGACTTGGGTATCG 60.179 60.000 0.00 0.00 43.97 2.92
2294 4178 2.445525 ACTAGTGGTGGTTGGGTGATTT 59.554 45.455 0.00 0.00 0.00 2.17
2569 4454 3.243367 CCTTTAGACTGAGAGCTGATCCG 60.243 52.174 0.00 0.00 0.00 4.18
2583 4468 6.655425 ACTCTATTGGCTTCAAACCTTTAGAC 59.345 38.462 0.00 0.00 33.67 2.59
2642 4534 2.284039 TGTACTACAGGCGGGCCA 60.284 61.111 12.97 0.00 38.92 5.36
2730 4622 6.949463 AGTCTAGCTTTCTTAGGAACTACAGT 59.051 38.462 0.00 0.00 42.67 3.55
2732 4624 9.476928 AATAGTCTAGCTTTCTTAGGAACTACA 57.523 33.333 0.00 0.00 42.67 2.74
2772 4665 5.166398 CCTGAGCCATTTCAAAATTGAGAC 58.834 41.667 0.00 0.00 38.61 3.36
2802 4695 0.328258 AGGAAACTACGGCTGGCAAT 59.672 50.000 1.08 0.00 40.61 3.56
2808 4701 3.202829 TGTTTTGAGGAAACTACGGCT 57.797 42.857 3.66 0.00 46.25 5.52
2867 4760 0.247185 AAATGCCGCCAGAACCATTG 59.753 50.000 0.00 0.00 0.00 2.82
2889 4782 5.381174 AAAAATTTAGGGAACTACGGTGC 57.619 39.130 0.00 0.00 44.30 5.01
2910 4803 7.926018 GCAGGGAAGAAAGAAACTAATCAAAAA 59.074 33.333 0.00 0.00 0.00 1.94
2911 4804 7.287696 AGCAGGGAAGAAAGAAACTAATCAAAA 59.712 33.333 0.00 0.00 0.00 2.44
2948 4843 3.117888 CACAAGGTAGCCCTGGTCATAAT 60.118 47.826 0.00 0.00 41.59 1.28
3000 4895 7.927629 GCAAATGGAATTTTAGCTGGATTATCA 59.072 33.333 0.00 0.00 46.10 2.15
3033 4928 7.106239 ACATTTCGTCAGATATGAGACCTTTT 58.894 34.615 0.00 0.00 37.82 2.27
3036 4931 5.860941 ACATTTCGTCAGATATGAGACCT 57.139 39.130 0.00 0.00 37.82 3.85
3161 5067 6.419710 GCAAAGACAAACATAAAGGTACAACC 59.580 38.462 0.00 0.00 38.99 3.77
3208 5114 5.904362 AAGCCTGGAAATAATCAAGACAC 57.096 39.130 0.00 0.00 29.56 3.67
3209 5115 6.480763 TGTAAGCCTGGAAATAATCAAGACA 58.519 36.000 0.00 0.00 29.56 3.41
3212 5118 6.603201 TCCTTGTAAGCCTGGAAATAATCAAG 59.397 38.462 0.00 2.64 0.00 3.02
3228 5134 2.344950 CACTGCAGCTCTCCTTGTAAG 58.655 52.381 15.27 0.00 0.00 2.34
3229 5135 1.609061 GCACTGCAGCTCTCCTTGTAA 60.609 52.381 15.27 0.00 0.00 2.41
3275 5181 1.014044 TCGATGGCAGCGTGACTTTC 61.014 55.000 25.32 0.00 0.00 2.62
3283 5189 2.407846 ATACCTCGTCGATGGCAGCG 62.408 60.000 20.57 20.57 0.00 5.18
3321 5227 4.212004 GGCAGAAATGAAAGGCAAAACTTC 59.788 41.667 0.00 0.00 0.00 3.01
3342 5248 4.509600 GCTGATACTGACTCACTAAATGGC 59.490 45.833 0.00 0.00 0.00 4.40
3346 5252 5.246203 ACTTGGCTGATACTGACTCACTAAA 59.754 40.000 0.00 0.00 0.00 1.85
3382 5288 3.127548 GGCATATGTCCTTGACACACTTG 59.872 47.826 4.29 0.00 45.65 3.16
3453 5359 4.322804 CGCTTGAATTCAGTTTCAGATTGC 59.677 41.667 8.41 1.83 36.97 3.56
3586 5570 6.643770 AGATAAGAAAACATTGTGCTGCAAAG 59.356 34.615 2.77 0.00 40.91 2.77
3632 5616 1.887242 GCATATTCCGCCGTCTGCA 60.887 57.895 0.00 0.00 41.33 4.41
3639 5623 0.602638 TGGACATCGCATATTCCGCC 60.603 55.000 0.00 0.00 0.00 6.13
3662 5646 2.036217 ACAGTGTCATTGTTTGCCCATG 59.964 45.455 0.00 0.00 0.00 3.66
3669 5653 4.384056 CCTCTCTGACAGTGTCATTGTTT 58.616 43.478 25.65 0.00 41.94 2.83
3708 5692 4.631813 AGCTTCATTCAGTCGTCAATTACC 59.368 41.667 0.00 0.00 0.00 2.85
3719 5703 3.482156 ACACAGACAGCTTCATTCAGT 57.518 42.857 0.00 0.00 0.00 3.41
3726 5710 1.953559 TGTCCAACACAGACAGCTTC 58.046 50.000 0.00 0.00 39.29 3.86
3736 5720 4.447779 GCAGCAACTGAGTGTCCAACAC 62.448 54.545 1.99 1.99 39.45 3.32
3737 5721 1.667236 CAGCAACTGAGTGTCCAACA 58.333 50.000 0.00 0.00 32.44 3.33
3738 5722 0.308993 GCAGCAACTGAGTGTCCAAC 59.691 55.000 0.00 0.00 32.44 3.77
3739 5723 0.181114 AGCAGCAACTGAGTGTCCAA 59.819 50.000 0.00 0.00 32.44 3.53
3740 5724 0.181114 AAGCAGCAACTGAGTGTCCA 59.819 50.000 0.00 0.00 32.44 4.02
3741 5725 1.312815 AAAGCAGCAACTGAGTGTCC 58.687 50.000 0.00 0.00 32.44 4.02
3742 5726 3.669023 GCATAAAGCAGCAACTGAGTGTC 60.669 47.826 0.00 0.00 44.79 3.67
3743 5727 2.227388 GCATAAAGCAGCAACTGAGTGT 59.773 45.455 0.00 0.00 44.79 3.55
3744 5728 2.860062 GCATAAAGCAGCAACTGAGTG 58.140 47.619 0.00 0.00 44.79 3.51
3760 5744 3.225940 TCAACCACACCAAACATGCATA 58.774 40.909 0.00 0.00 0.00 3.14
3761 5745 2.037901 TCAACCACACCAAACATGCAT 58.962 42.857 0.00 0.00 0.00 3.96
3765 5749 4.151121 TGATGATCAACCACACCAAACAT 58.849 39.130 0.00 0.00 0.00 2.71
3768 5752 6.891361 AGAATATGATGATCAACCACACCAAA 59.109 34.615 0.00 0.00 0.00 3.28
3786 5774 8.017373 CGTTCCCTGCAATGTATTTAGAATATG 58.983 37.037 0.00 0.00 0.00 1.78
3794 5782 2.802719 ACCGTTCCCTGCAATGTATTT 58.197 42.857 0.00 0.00 0.00 1.40
3842 5831 7.487484 TGAAAATATCGTTGGTGTACCGTATA 58.513 34.615 0.00 0.00 39.43 1.47
4057 6046 3.084039 CAGTTGCAACACCCATATGACT 58.916 45.455 30.11 2.72 0.00 3.41
4085 6078 3.189287 GCAACCATCAGAACAAATCTCGT 59.811 43.478 0.00 0.00 35.73 4.18
4091 6084 3.286353 TGTGAGCAACCATCAGAACAAA 58.714 40.909 0.00 0.00 0.00 2.83
4117 6110 7.320443 TGTATATCTGCACATGAGGAAAAAC 57.680 36.000 0.00 0.00 0.00 2.43
4118 6111 7.067372 CCTTGTATATCTGCACATGAGGAAAAA 59.933 37.037 0.00 0.00 28.13 1.94
4123 6116 4.965814 ACCTTGTATATCTGCACATGAGG 58.034 43.478 0.00 0.00 31.63 3.86
4147 6140 5.105797 TGCGAAGGTAAGGTTATTCGAGTAA 60.106 40.000 10.07 0.00 45.50 2.24
4153 6146 4.694037 ACAGTTGCGAAGGTAAGGTTATTC 59.306 41.667 0.00 0.00 0.00 1.75
4162 6155 1.414919 ACCTTGACAGTTGCGAAGGTA 59.585 47.619 11.68 0.00 45.15 3.08
4184 6177 0.250513 AAGAGAACACATCGAGGGCC 59.749 55.000 0.69 0.00 0.00 5.80
4190 6183 3.181526 GCTGTAGCAAAGAGAACACATCG 60.182 47.826 0.00 0.00 41.59 3.84
4248 6241 0.179056 ATGTCCACCGCCCTATTTCG 60.179 55.000 0.00 0.00 0.00 3.46
4311 6304 1.528129 CTCACCAGAAAGCCACCTTC 58.472 55.000 0.00 0.00 0.00 3.46
4350 6343 4.720902 CCACCACCGGATGCTGCA 62.721 66.667 9.46 4.13 0.00 4.41
4356 6349 0.107214 CATAGCAACCACCACCGGAT 60.107 55.000 9.46 0.00 0.00 4.18
4370 6363 5.504665 GCAATTACAGTGTGATGGACATAGC 60.505 44.000 5.88 0.00 36.78 2.97
4373 6366 4.334552 TGCAATTACAGTGTGATGGACAT 58.665 39.130 5.88 0.00 36.78 3.06
4384 6377 6.917477 CACAACTAACACAATGCAATTACAGT 59.083 34.615 0.00 0.00 32.46 3.55
4385 6378 6.129115 GCACAACTAACACAATGCAATTACAG 60.129 38.462 0.00 0.00 32.46 2.74
4391 6384 2.692557 AGGCACAACTAACACAATGCAA 59.307 40.909 0.00 0.00 34.73 4.08
4393 6386 3.052036 CAAGGCACAACTAACACAATGC 58.948 45.455 0.00 0.00 0.00 3.56
4402 6395 3.181465 GCTATAGCTCCAAGGCACAACTA 60.181 47.826 17.75 0.00 38.21 2.24
4404 6397 1.943340 GCTATAGCTCCAAGGCACAAC 59.057 52.381 17.75 0.00 38.21 3.32
4447 6440 6.587226 TGAACAGAACAATAATTTGCATCTGC 59.413 34.615 16.00 0.00 45.21 4.26
4481 6474 9.889128 CCCTCATTTTGTTATTTTTCCATACAT 57.111 29.630 0.00 0.00 0.00 2.29
4482 6475 9.094578 TCCCTCATTTTGTTATTTTTCCATACA 57.905 29.630 0.00 0.00 0.00 2.29
4483 6476 9.936759 TTCCCTCATTTTGTTATTTTTCCATAC 57.063 29.630 0.00 0.00 0.00 2.39
4485 6478 9.452287 CATTCCCTCATTTTGTTATTTTTCCAT 57.548 29.630 0.00 0.00 0.00 3.41
4486 6479 8.435982 ACATTCCCTCATTTTGTTATTTTTCCA 58.564 29.630 0.00 0.00 0.00 3.53
4489 6482 8.987890 CGAACATTCCCTCATTTTGTTATTTTT 58.012 29.630 0.00 0.00 31.09 1.94
4490 6483 7.117667 GCGAACATTCCCTCATTTTGTTATTTT 59.882 33.333 0.00 0.00 31.09 1.82
4492 6485 6.071391 AGCGAACATTCCCTCATTTTGTTATT 60.071 34.615 0.00 0.00 31.09 1.40
4495 6488 3.573967 AGCGAACATTCCCTCATTTTGTT 59.426 39.130 0.00 0.00 33.47 2.83
4498 6491 2.493278 CCAGCGAACATTCCCTCATTTT 59.507 45.455 0.00 0.00 0.00 1.82
4499 6492 2.094675 CCAGCGAACATTCCCTCATTT 58.905 47.619 0.00 0.00 0.00 2.32
4504 6552 1.002134 CCACCAGCGAACATTCCCT 60.002 57.895 0.00 0.00 0.00 4.20
4532 6580 1.136110 CCACCAACGTTTTTCTGCCTT 59.864 47.619 0.00 0.00 0.00 4.35
4544 6593 2.892334 CGAAGCACACCCACCAACG 61.892 63.158 0.00 0.00 0.00 4.10
4554 6603 2.745037 GGGGTGTACCGAAGCACA 59.255 61.111 0.00 0.00 41.60 4.57
4608 6657 8.935844 GCAGATAGATATCAGTCGATCTATAGG 58.064 40.741 5.32 2.34 42.71 2.57
4616 6665 4.265893 GGAGGCAGATAGATATCAGTCGA 58.734 47.826 5.32 0.00 35.17 4.20
4618 6667 4.013728 ACGGAGGCAGATAGATATCAGTC 58.986 47.826 5.32 2.50 35.17 3.51
4619 6668 4.040936 ACGGAGGCAGATAGATATCAGT 57.959 45.455 5.32 0.00 35.17 3.41
4620 6669 5.432645 TCTACGGAGGCAGATAGATATCAG 58.567 45.833 5.32 0.00 35.17 2.90
4621 6670 5.437191 TCTACGGAGGCAGATAGATATCA 57.563 43.478 5.32 0.00 35.17 2.15
4663 6712 3.706183 TGTGGGATGCAAATGGATTACA 58.294 40.909 0.00 0.00 0.00 2.41
4741 6790 2.213499 CTCGTTGTCCCCATAATGAGC 58.787 52.381 0.00 0.00 34.34 4.26
4759 6808 9.342308 TCACCAAGGATAAATTATTGATGACTC 57.658 33.333 0.00 0.00 0.00 3.36
4795 6844 4.252073 TGTACGAGAGACAGGACTTAGAC 58.748 47.826 0.00 0.00 0.00 2.59
4803 6852 2.478031 CGGTGATTGTACGAGAGACAGG 60.478 54.545 0.00 0.00 0.00 4.00
4804 6853 2.418976 TCGGTGATTGTACGAGAGACAG 59.581 50.000 0.00 0.00 32.29 3.51
4806 6855 3.482722 TTCGGTGATTGTACGAGAGAC 57.517 47.619 0.00 0.00 37.95 3.36
4813 6862 7.124347 TGTGAAATACTTTCGGTGATTGTAC 57.876 36.000 0.00 0.00 42.55 2.90
4818 6867 9.010029 ACTTATTTGTGAAATACTTTCGGTGAT 57.990 29.630 0.00 0.00 42.55 3.06
4819 6868 8.385898 ACTTATTTGTGAAATACTTTCGGTGA 57.614 30.769 0.00 0.00 42.55 4.02
4857 6912 5.590663 ACTTTGTCGAGATATCTAGAGTGCA 59.409 40.000 15.02 7.91 0.00 4.57
4866 6921 9.872757 TTTTTGTTACAACTTTGTCGAGATATC 57.127 29.630 0.00 0.00 42.35 1.63
4891 6946 9.892130 AGTTATCTTTGTCGAGATATCCTTTTT 57.108 29.630 0.00 0.00 38.18 1.94
4895 6950 8.798402 CCTTAGTTATCTTTGTCGAGATATCCT 58.202 37.037 0.00 0.00 38.18 3.24
4896 6951 8.794553 TCCTTAGTTATCTTTGTCGAGATATCC 58.205 37.037 0.00 0.00 38.18 2.59
4915 6970 5.443283 TGGTCGTGTCTATGTATCCTTAGT 58.557 41.667 0.00 0.00 0.00 2.24
4916 6971 6.576662 ATGGTCGTGTCTATGTATCCTTAG 57.423 41.667 0.00 0.00 0.00 2.18
4927 6982 9.828039 CTAGGTATATGTATATGGTCGTGTCTA 57.172 37.037 0.00 0.00 0.00 2.59
4929 6984 8.728337 TCTAGGTATATGTATATGGTCGTGTC 57.272 38.462 0.00 0.00 0.00 3.67
5037 7097 6.870971 TTTTAAAGCACTACACCTCGAAAT 57.129 33.333 0.00 0.00 0.00 2.17
5041 7103 5.856126 TCATTTTAAAGCACTACACCTCG 57.144 39.130 0.00 0.00 0.00 4.63
5062 7124 5.105917 TGGGAAGTGAAGCCGATTATTTTTC 60.106 40.000 0.00 0.00 0.00 2.29
5068 7130 3.644966 AATGGGAAGTGAAGCCGATTA 57.355 42.857 0.00 0.00 31.90 1.75
5071 7133 3.426787 TTTAATGGGAAGTGAAGCCGA 57.573 42.857 0.00 0.00 0.00 5.54
5072 7134 4.718940 ATTTTAATGGGAAGTGAAGCCG 57.281 40.909 0.00 0.00 0.00 5.52
5284 7346 6.915843 ACATCACGTTAACCAACTCAAAATTC 59.084 34.615 0.00 0.00 32.09 2.17
5286 7348 6.385649 ACATCACGTTAACCAACTCAAAAT 57.614 33.333 0.00 0.00 32.09 1.82
5289 7351 7.118101 GGTAATACATCACGTTAACCAACTCAA 59.882 37.037 0.00 0.00 32.09 3.02
5291 7353 6.036408 GGGTAATACATCACGTTAACCAACTC 59.964 42.308 0.00 0.00 35.67 3.01
5292 7354 5.876460 GGGTAATACATCACGTTAACCAACT 59.124 40.000 0.00 0.00 35.67 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.