Multiple sequence alignment - TraesCS5D01G314100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G314100 chr5D 100.000 3422 0 0 1 3422 408851592 408855013 0.000000e+00 6320.0
1 TraesCS5D01G314100 chr5A 89.938 3041 182 59 34 2982 519903251 519906259 0.000000e+00 3807.0
2 TraesCS5D01G314100 chr5A 84.615 65 4 5 1155 1219 674169164 674169222 3.690000e-05 60.2
3 TraesCS5D01G314100 chr5B 93.148 2160 74 26 552 2664 490769261 490771393 0.000000e+00 3101.0
4 TraesCS5D01G314100 chr3A 83.658 1438 184 33 1018 2422 516239586 516238167 0.000000e+00 1306.0
5 TraesCS5D01G314100 chr3D 84.320 1352 170 26 1095 2422 396673455 396672122 0.000000e+00 1284.0
6 TraesCS5D01G314100 chr3B 82.720 1441 189 33 1018 2422 522031764 522030348 0.000000e+00 1227.0
7 TraesCS5D01G314100 chr4B 81.152 191 29 6 1155 1344 634344339 634344155 2.750000e-31 147.0
8 TraesCS5D01G314100 chr4D 80.628 191 30 6 1155 1344 494833370 494833186 1.280000e-29 141.0
9 TraesCS5D01G314100 chr1B 79.487 156 25 6 1155 1308 11182346 11182196 1.680000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G314100 chr5D 408851592 408855013 3421 False 6320 6320 100.000 1 3422 1 chr5D.!!$F1 3421
1 TraesCS5D01G314100 chr5A 519903251 519906259 3008 False 3807 3807 89.938 34 2982 1 chr5A.!!$F1 2948
2 TraesCS5D01G314100 chr5B 490769261 490771393 2132 False 3101 3101 93.148 552 2664 1 chr5B.!!$F1 2112
3 TraesCS5D01G314100 chr3A 516238167 516239586 1419 True 1306 1306 83.658 1018 2422 1 chr3A.!!$R1 1404
4 TraesCS5D01G314100 chr3D 396672122 396673455 1333 True 1284 1284 84.320 1095 2422 1 chr3D.!!$R1 1327
5 TraesCS5D01G314100 chr3B 522030348 522031764 1416 True 1227 1227 82.720 1018 2422 1 chr3B.!!$R1 1404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 813 0.304705 CAAGCGGACGTATGGATTGC 59.695 55.0 0.0 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2704 2871 0.235926 GGTTGCTCACTCTTTCGTGC 59.764 55.0 0.0 0.0 34.92 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.274978 CCCGTATAATTCACCCCAACTTT 58.725 43.478 0.00 0.00 0.00 2.66
43 44 4.337274 CCCGTATAATTCACCCCAACTTTC 59.663 45.833 0.00 0.00 0.00 2.62
52 53 1.217942 ACCCCAACTTTCCTCAGCTTT 59.782 47.619 0.00 0.00 0.00 3.51
53 54 2.445525 ACCCCAACTTTCCTCAGCTTTA 59.554 45.455 0.00 0.00 0.00 1.85
55 56 3.486383 CCCAACTTTCCTCAGCTTTACA 58.514 45.455 0.00 0.00 0.00 2.41
56 57 3.503748 CCCAACTTTCCTCAGCTTTACAG 59.496 47.826 0.00 0.00 0.00 2.74
57 58 3.503748 CCAACTTTCCTCAGCTTTACAGG 59.496 47.826 0.00 0.00 0.00 4.00
70 71 3.368427 GCTTTACAGGAAAATGGCCCTTC 60.368 47.826 0.00 0.00 0.00 3.46
75 76 0.832626 GGAAAATGGCCCTTCCCATG 59.167 55.000 14.65 0.00 44.68 3.66
81 82 2.157640 TGGCCCTTCCCATGTATTTG 57.842 50.000 0.00 0.00 0.00 2.32
83 84 0.752658 GCCCTTCCCATGTATTTGGC 59.247 55.000 0.00 0.00 35.29 4.52
84 85 1.689258 GCCCTTCCCATGTATTTGGCT 60.689 52.381 5.76 0.00 35.29 4.75
95 97 2.961741 TGTATTTGGCTGGCAGAAAACA 59.038 40.909 20.86 13.57 0.00 2.83
107 109 3.375642 GCAGAAAACAGCCTGAAAGTTC 58.624 45.455 0.00 0.00 32.37 3.01
108 110 3.067320 GCAGAAAACAGCCTGAAAGTTCT 59.933 43.478 0.00 0.00 32.37 3.01
112 114 0.538287 ACAGCCTGAAAGTTCTGGGC 60.538 55.000 16.10 15.89 43.94 5.36
116 118 3.314388 CTGAAAGTTCTGGGCGCGC 62.314 63.158 25.94 25.94 0.00 6.86
134 136 2.892425 GCCTCGTCTTGATGCCGG 60.892 66.667 0.00 0.00 32.63 6.13
141 143 4.776322 CTTGATGCCGGGTCGCCA 62.776 66.667 2.18 0.00 0.00 5.69
162 164 3.112075 CAACGCGATGCCACTCGT 61.112 61.111 15.93 0.00 40.73 4.18
168 170 3.248171 GATGCCACTCGTCGCGTC 61.248 66.667 5.77 0.00 34.13 5.19
169 171 3.964221 GATGCCACTCGTCGCGTCA 62.964 63.158 5.77 0.00 40.14 4.35
176 178 1.660575 CTCGTCGCGTCAAACCACT 60.661 57.895 5.77 0.00 0.00 4.00
177 179 0.386352 CTCGTCGCGTCAAACCACTA 60.386 55.000 5.77 0.00 0.00 2.74
179 181 1.611592 CGTCGCGTCAAACCACTACC 61.612 60.000 5.77 0.00 0.00 3.18
182 184 1.611592 CGCGTCAAACCACTACCGAC 61.612 60.000 0.00 0.00 0.00 4.79
185 187 1.536496 CGTCAAACCACTACCGACACA 60.536 52.381 0.00 0.00 0.00 3.72
187 189 1.481363 TCAAACCACTACCGACACACA 59.519 47.619 0.00 0.00 0.00 3.72
188 190 2.103432 TCAAACCACTACCGACACACAT 59.897 45.455 0.00 0.00 0.00 3.21
189 191 2.163818 AACCACTACCGACACACATG 57.836 50.000 0.00 0.00 0.00 3.21
190 192 1.334160 ACCACTACCGACACACATGA 58.666 50.000 0.00 0.00 0.00 3.07
200 202 2.032528 ACACATGACCCTGCACCG 59.967 61.111 0.00 0.00 0.00 4.94
251 253 3.730761 CTGCTTGCCGCTGTCACC 61.731 66.667 0.00 0.00 40.11 4.02
283 285 5.680619 CCCTAGGTCATTTGTATGCTTGTA 58.319 41.667 8.29 0.00 0.00 2.41
287 289 9.507329 CCTAGGTCATTTGTATGCTTGTATAAT 57.493 33.333 0.00 0.00 0.00 1.28
328 330 8.572855 AATGATTTTAGAGAAAGGAACTGAGG 57.427 34.615 0.00 0.00 40.86 3.86
336 338 5.247337 AGAGAAAGGAACTGAGGAAAGTAGG 59.753 44.000 0.00 0.00 40.86 3.18
347 349 4.593206 TGAGGAAAGTAGGTGTGAGACAAT 59.407 41.667 0.00 0.00 0.00 2.71
351 353 6.935208 AGGAAAGTAGGTGTGAGACAATTTAC 59.065 38.462 0.00 0.00 0.00 2.01
361 363 9.185680 GGTGTGAGACAATTTACCCTAAATTAT 57.814 33.333 0.72 0.00 44.20 1.28
383 385 1.101331 GGACATCCCGTAAGACGACT 58.899 55.000 0.00 0.00 46.05 4.18
418 420 3.526931 TTCGGAGAGCTATTGGAGTTG 57.473 47.619 0.00 0.00 38.43 3.16
419 421 1.137086 TCGGAGAGCTATTGGAGTTGC 59.863 52.381 0.00 0.00 0.00 4.17
434 436 3.879892 GGAGTTGCTCTAACCATCCAATC 59.120 47.826 0.00 0.00 40.24 2.67
436 438 4.265073 AGTTGCTCTAACCATCCAATCAC 58.735 43.478 0.00 0.00 40.24 3.06
445 455 7.957002 TCTAACCATCCAATCACTATTCTCTC 58.043 38.462 0.00 0.00 0.00 3.20
479 489 6.183360 TGTTTTCAGTTTGAACATAGGACCAC 60.183 38.462 0.00 0.00 35.89 4.16
518 535 8.856153 TTTTACACTCTGCAGGTGAATAATAA 57.144 30.769 30.11 19.14 38.01 1.40
519 536 9.461312 TTTTACACTCTGCAGGTGAATAATAAT 57.539 29.630 30.11 14.92 38.01 1.28
521 538 9.764363 TTACACTCTGCAGGTGAATAATAATAG 57.236 33.333 30.11 13.49 38.01 1.73
522 539 8.023021 ACACTCTGCAGGTGAATAATAATAGA 57.977 34.615 30.11 2.35 38.01 1.98
523 540 8.654997 ACACTCTGCAGGTGAATAATAATAGAT 58.345 33.333 30.11 9.93 38.01 1.98
524 541 8.933807 CACTCTGCAGGTGAATAATAATAGATG 58.066 37.037 23.25 4.70 36.89 2.90
525 542 8.874156 ACTCTGCAGGTGAATAATAATAGATGA 58.126 33.333 15.13 0.00 0.00 2.92
526 543 9.368674 CTCTGCAGGTGAATAATAATAGATGAG 57.631 37.037 15.13 0.00 0.00 2.90
527 544 8.874156 TCTGCAGGTGAATAATAATAGATGAGT 58.126 33.333 15.13 0.00 0.00 3.41
528 545 9.149225 CTGCAGGTGAATAATAATAGATGAGTC 57.851 37.037 5.57 0.00 0.00 3.36
529 546 8.097038 TGCAGGTGAATAATAATAGATGAGTCC 58.903 37.037 0.00 0.00 0.00 3.85
530 547 7.550906 GCAGGTGAATAATAATAGATGAGTCCC 59.449 40.741 0.00 0.00 0.00 4.46
531 548 7.761704 CAGGTGAATAATAATAGATGAGTCCCG 59.238 40.741 0.00 0.00 0.00 5.14
532 549 6.535508 GGTGAATAATAATAGATGAGTCCCGC 59.464 42.308 0.00 0.00 0.00 6.13
533 550 7.097192 GTGAATAATAATAGATGAGTCCCGCA 58.903 38.462 0.00 0.00 0.00 5.69
534 551 7.602644 GTGAATAATAATAGATGAGTCCCGCAA 59.397 37.037 0.00 0.00 0.00 4.85
535 552 8.154203 TGAATAATAATAGATGAGTCCCGCAAA 58.846 33.333 0.00 0.00 0.00 3.68
536 553 8.918202 AATAATAATAGATGAGTCCCGCAAAA 57.082 30.769 0.00 0.00 0.00 2.44
537 554 8.918202 ATAATAATAGATGAGTCCCGCAAAAA 57.082 30.769 0.00 0.00 0.00 1.94
686 744 2.892640 GGAGAAAATTGCGGGGCC 59.107 61.111 0.00 0.00 0.00 5.80
731 789 5.710984 AGTTTACTTCTCATCATCGTTCGT 58.289 37.500 0.00 0.00 0.00 3.85
747 808 3.089784 GTGCAAGCGGACGTATGG 58.910 61.111 0.00 0.00 0.00 2.74
752 813 0.304705 CAAGCGGACGTATGGATTGC 59.695 55.000 0.00 0.00 0.00 3.56
831 897 0.737219 ACCGCACCTCTCGTACATAC 59.263 55.000 0.00 0.00 0.00 2.39
859 927 1.409412 CGCCGTTCATCTCGATAAGG 58.591 55.000 0.00 0.00 0.00 2.69
862 930 2.034812 GCCGTTCATCTCGATAAGGTCT 59.965 50.000 0.00 0.00 0.00 3.85
905 973 2.746904 CCGGCACATTTGTTACATCTGA 59.253 45.455 0.00 0.00 0.00 3.27
1320 1417 1.737008 GCCCCTCAAGTTCGACGTC 60.737 63.158 5.18 5.18 0.00 4.34
1911 2029 1.079612 CAGCAGCATCGTCTCCACA 60.080 57.895 0.00 0.00 0.00 4.17
1918 2036 3.006756 ATCGTCTCCACAGGCACGG 62.007 63.158 7.29 0.00 32.22 4.94
2016 2140 4.814294 CTGTCGTACGCCTGGGCC 62.814 72.222 11.24 0.00 37.98 5.80
2432 2556 4.032653 GCTCTGAGCCTCTGACCT 57.967 61.111 18.80 0.00 34.48 3.85
2433 2557 1.815866 GCTCTGAGCCTCTGACCTC 59.184 63.158 18.80 0.00 34.48 3.85
2435 2559 1.379176 TCTGAGCCTCTGACCTCGG 60.379 63.158 0.00 3.98 36.11 4.63
2436 2560 3.071206 TGAGCCTCTGACCTCGGC 61.071 66.667 0.00 0.00 44.09 5.54
2441 2565 4.180946 CTCTGACCTCGGCCGACG 62.181 72.222 27.28 23.46 46.11 5.12
2474 2622 6.203808 ACTGCATACGAGTACAAATGAGTA 57.796 37.500 0.00 0.00 0.00 2.59
2475 2623 6.034591 ACTGCATACGAGTACAAATGAGTAC 58.965 40.000 0.00 0.00 43.61 2.73
2498 2652 9.477484 GTACTGTATAATTCGATTTGGATCAGT 57.523 33.333 17.09 17.09 35.80 3.41
2501 2655 6.992123 TGTATAATTCGATTTGGATCAGTGCT 59.008 34.615 2.86 0.00 32.33 4.40
2502 2656 8.147704 TGTATAATTCGATTTGGATCAGTGCTA 58.852 33.333 2.86 0.00 32.33 3.49
2586 2748 7.816031 ACGAGAGGACGAAGACATAAATAAAAA 59.184 33.333 0.00 0.00 37.03 1.94
2623 2786 2.820197 GGGTTCCATTGAGTCTTTCCAC 59.180 50.000 0.00 0.00 0.00 4.02
2624 2787 2.484264 GGTTCCATTGAGTCTTTCCACG 59.516 50.000 0.00 0.00 0.00 4.94
2654 2821 2.037367 AGACCACCGAGCTAGCCA 59.963 61.111 12.13 0.00 0.00 4.75
2657 2824 0.032267 GACCACCGAGCTAGCCATAC 59.968 60.000 12.13 0.00 0.00 2.39
2669 2836 0.454600 AGCCATACCACGTACGTCTG 59.545 55.000 19.94 15.12 0.00 3.51
2704 2871 0.443869 CGAAAACAGACGAGCCATGG 59.556 55.000 7.63 7.63 0.00 3.66
2705 2872 0.169009 GAAAACAGACGAGCCATGGC 59.831 55.000 30.12 30.12 42.33 4.40
2743 2910 3.447944 ACCCCATTCTCTTCTCGTACTTC 59.552 47.826 0.00 0.00 0.00 3.01
2758 2925 2.911509 TTCCGTTCCCGTGACCGA 60.912 61.111 0.00 0.00 35.63 4.69
2775 2942 1.597663 CCGAATGGGTACGAATGAAGC 59.402 52.381 0.00 0.00 0.00 3.86
2776 2943 1.257936 CGAATGGGTACGAATGAAGCG 59.742 52.381 0.00 0.00 0.00 4.68
2778 2945 2.910688 ATGGGTACGAATGAAGCGAT 57.089 45.000 0.00 0.00 0.00 4.58
2780 2947 3.804786 TGGGTACGAATGAAGCGATAA 57.195 42.857 0.00 0.00 0.00 1.75
2781 2948 4.126208 TGGGTACGAATGAAGCGATAAA 57.874 40.909 0.00 0.00 0.00 1.40
2782 2949 3.866910 TGGGTACGAATGAAGCGATAAAC 59.133 43.478 0.00 0.00 0.00 2.01
2783 2950 4.117685 GGGTACGAATGAAGCGATAAACT 58.882 43.478 0.00 0.00 0.00 2.66
2794 2961 3.470709 AGCGATAAACTGGGATGACATG 58.529 45.455 0.00 0.00 0.00 3.21
2796 2963 3.808728 CGATAAACTGGGATGACATGGT 58.191 45.455 0.00 0.00 0.00 3.55
2812 2979 7.610580 TGACATGGTAGATTATGATGGTGTA 57.389 36.000 0.00 0.00 0.00 2.90
2827 2994 0.782384 GTGTACAACAGCGACGAAGG 59.218 55.000 0.00 0.00 0.00 3.46
2828 2995 0.386476 TGTACAACAGCGACGAAGGT 59.614 50.000 0.00 0.00 0.00 3.50
2831 2998 0.874607 ACAACAGCGACGAAGGTGAC 60.875 55.000 17.60 0.00 41.72 3.67
2850 3020 3.073062 TGACTTCTTCTTCTTCCCCTTGG 59.927 47.826 0.00 0.00 0.00 3.61
2856 3026 0.250513 CTTCTTCCCCTTGGTCTCCG 59.749 60.000 0.00 0.00 0.00 4.63
2858 3028 0.042731 TCTTCCCCTTGGTCTCCGAT 59.957 55.000 0.00 0.00 0.00 4.18
2860 3030 2.116238 CTTCCCCTTGGTCTCCGATTA 58.884 52.381 0.00 0.00 0.00 1.75
2861 3031 1.492764 TCCCCTTGGTCTCCGATTAC 58.507 55.000 0.00 0.00 0.00 1.89
2863 3033 1.413077 CCCCTTGGTCTCCGATTACTC 59.587 57.143 0.00 0.00 0.00 2.59
2864 3034 2.108168 CCCTTGGTCTCCGATTACTCA 58.892 52.381 0.00 0.00 0.00 3.41
2874 3045 5.795441 GTCTCCGATTACTCAAATTGTTTGC 59.205 40.000 0.00 0.00 40.43 3.68
2877 3048 5.471797 TCCGATTACTCAAATTGTTTGCTGA 59.528 36.000 0.00 0.00 40.43 4.26
2881 3052 9.340695 CGATTACTCAAATTGTTTGCTGAATTA 57.659 29.630 0.00 0.00 40.43 1.40
2885 3056 8.141835 ACTCAAATTGTTTGCTGAATTAAACC 57.858 30.769 0.00 0.00 40.43 3.27
2889 3060 7.778470 AATTGTTTGCTGAATTAAACCGAAA 57.222 28.000 0.00 0.00 36.27 3.46
2891 3062 5.897050 TGTTTGCTGAATTAAACCGAAACT 58.103 33.333 0.00 0.00 36.27 2.66
2892 3063 6.334202 TGTTTGCTGAATTAAACCGAAACTT 58.666 32.000 0.00 0.00 36.27 2.66
2908 3079 5.276820 CCGAAACTTGCAAAATTTTCAGGAC 60.277 40.000 19.84 5.07 30.91 3.85
2912 3083 5.916318 ACTTGCAAAATTTTCAGGACATGA 58.084 33.333 0.00 0.00 35.62 3.07
2913 3084 5.987347 ACTTGCAAAATTTTCAGGACATGAG 59.013 36.000 0.00 6.82 39.68 2.90
2914 3085 5.787953 TGCAAAATTTTCAGGACATGAGA 57.212 34.783 0.00 0.00 39.68 3.27
2920 3091 0.608130 TTCAGGACATGAGACCACCG 59.392 55.000 0.00 0.00 39.68 4.94
2925 3096 1.148310 GACATGAGACCACCGTTGTG 58.852 55.000 0.00 0.00 42.39 3.33
2943 3114 5.296748 GTTGTGTGGGCTAATGAAAAATGT 58.703 37.500 0.00 0.00 0.00 2.71
2953 3124 7.254084 GGGCTAATGAAAAATGTTTCTATTGCG 60.254 37.037 9.75 5.59 43.13 4.85
2954 3125 7.113027 GCTAATGAAAAATGTTTCTATTGCGC 58.887 34.615 9.75 0.00 43.13 6.09
2955 3126 5.685195 ATGAAAAATGTTTCTATTGCGCG 57.315 34.783 9.75 0.00 43.13 6.86
2961 3132 2.080693 TGTTTCTATTGCGCGAATGGT 58.919 42.857 12.10 0.00 0.00 3.55
2964 3136 2.309528 TCTATTGCGCGAATGGTCTT 57.690 45.000 12.10 0.00 0.00 3.01
2966 3138 3.787785 TCTATTGCGCGAATGGTCTTAA 58.212 40.909 12.10 0.00 0.00 1.85
2970 3142 4.948608 TTGCGCGAATGGTCTTAATTTA 57.051 36.364 12.10 0.00 0.00 1.40
2982 3154 8.836268 ATGGTCTTAATTTAACGTGACACTTA 57.164 30.769 3.68 0.00 0.00 2.24
2983 3155 8.659925 TGGTCTTAATTTAACGTGACACTTAA 57.340 30.769 3.68 5.31 0.00 1.85
2984 3156 8.767085 TGGTCTTAATTTAACGTGACACTTAAG 58.233 33.333 12.95 12.95 0.00 1.85
2985 3157 7.743400 GGTCTTAATTTAACGTGACACTTAAGC 59.257 37.037 13.79 10.48 0.00 3.09
2986 3158 8.277713 GTCTTAATTTAACGTGACACTTAAGCA 58.722 33.333 13.79 0.00 0.00 3.91
2987 3159 8.492748 TCTTAATTTAACGTGACACTTAAGCAG 58.507 33.333 13.79 0.00 0.00 4.24
2988 3160 5.607119 ATTTAACGTGACACTTAAGCAGG 57.393 39.130 1.29 1.30 0.00 4.85
2989 3161 2.902705 AACGTGACACTTAAGCAGGA 57.097 45.000 1.29 0.00 0.00 3.86
2990 3162 3.402628 AACGTGACACTTAAGCAGGAT 57.597 42.857 1.29 0.00 0.00 3.24
2991 3163 2.688507 ACGTGACACTTAAGCAGGATG 58.311 47.619 1.29 0.00 40.87 3.51
2992 3164 2.299013 ACGTGACACTTAAGCAGGATGA 59.701 45.455 1.29 0.00 39.69 2.92
2993 3165 3.055819 ACGTGACACTTAAGCAGGATGAT 60.056 43.478 1.29 0.00 39.69 2.45
2994 3166 3.553511 CGTGACACTTAAGCAGGATGATC 59.446 47.826 1.29 0.00 39.69 2.92
2995 3167 3.873952 GTGACACTTAAGCAGGATGATCC 59.126 47.826 2.46 2.46 39.69 3.36
2996 3168 3.519107 TGACACTTAAGCAGGATGATCCA 59.481 43.478 14.90 0.00 39.61 3.41
2997 3169 4.164796 TGACACTTAAGCAGGATGATCCAT 59.835 41.667 14.90 0.00 39.61 3.41
2998 3170 5.121380 ACACTTAAGCAGGATGATCCATT 57.879 39.130 14.90 7.92 39.61 3.16
2999 3171 4.885907 ACACTTAAGCAGGATGATCCATTG 59.114 41.667 14.90 5.27 39.61 2.82
3000 3172 4.885907 CACTTAAGCAGGATGATCCATTGT 59.114 41.667 14.90 0.00 39.61 2.71
3001 3173 5.008415 CACTTAAGCAGGATGATCCATTGTC 59.992 44.000 14.90 1.30 39.61 3.18
3002 3174 2.653234 AGCAGGATGATCCATTGTCC 57.347 50.000 14.90 0.00 39.61 4.02
3003 3175 1.848388 AGCAGGATGATCCATTGTCCA 59.152 47.619 14.90 0.00 39.61 4.02
3004 3176 2.445905 AGCAGGATGATCCATTGTCCAT 59.554 45.455 14.90 0.00 39.61 3.41
3005 3177 3.117246 AGCAGGATGATCCATTGTCCATT 60.117 43.478 14.90 0.00 39.61 3.16
3006 3178 3.640029 GCAGGATGATCCATTGTCCATTT 59.360 43.478 14.90 0.00 39.61 2.32
3007 3179 4.828939 GCAGGATGATCCATTGTCCATTTA 59.171 41.667 14.90 0.00 39.61 1.40
3008 3180 5.048224 GCAGGATGATCCATTGTCCATTTAG 60.048 44.000 14.90 0.00 39.61 1.85
3009 3181 6.301486 CAGGATGATCCATTGTCCATTTAGA 58.699 40.000 14.90 0.00 39.61 2.10
3010 3182 6.946583 CAGGATGATCCATTGTCCATTTAGAT 59.053 38.462 14.90 0.00 39.61 1.98
3011 3183 7.120873 CAGGATGATCCATTGTCCATTTAGATC 59.879 40.741 14.90 0.00 39.61 2.75
3012 3184 6.944290 GGATGATCCATTGTCCATTTAGATCA 59.056 38.462 6.60 0.00 41.85 2.92
3013 3185 7.614583 GGATGATCCATTGTCCATTTAGATCAT 59.385 37.037 6.60 11.29 46.97 2.45
3014 3186 8.951614 ATGATCCATTGTCCATTTAGATCATT 57.048 30.769 6.74 0.00 43.78 2.57
3015 3187 8.771521 TGATCCATTGTCCATTTAGATCATTT 57.228 30.769 0.00 0.00 35.09 2.32
3016 3188 9.865152 TGATCCATTGTCCATTTAGATCATTTA 57.135 29.630 0.00 0.00 35.09 1.40
3018 3190 8.153479 TCCATTGTCCATTTAGATCATTTACG 57.847 34.615 0.00 0.00 0.00 3.18
3019 3191 7.990314 TCCATTGTCCATTTAGATCATTTACGA 59.010 33.333 0.00 0.00 0.00 3.43
3020 3192 8.070171 CCATTGTCCATTTAGATCATTTACGAC 58.930 37.037 0.00 0.00 0.00 4.34
3021 3193 8.611757 CATTGTCCATTTAGATCATTTACGACA 58.388 33.333 0.00 0.00 0.00 4.35
3022 3194 7.534085 TGTCCATTTAGATCATTTACGACAC 57.466 36.000 0.00 0.00 0.00 3.67
3023 3195 7.327975 TGTCCATTTAGATCATTTACGACACT 58.672 34.615 0.00 0.00 0.00 3.55
3024 3196 7.491372 TGTCCATTTAGATCATTTACGACACTC 59.509 37.037 0.00 0.00 0.00 3.51
3025 3197 7.491372 GTCCATTTAGATCATTTACGACACTCA 59.509 37.037 0.00 0.00 0.00 3.41
3026 3198 8.038351 TCCATTTAGATCATTTACGACACTCAA 58.962 33.333 0.00 0.00 0.00 3.02
3027 3199 8.331022 CCATTTAGATCATTTACGACACTCAAG 58.669 37.037 0.00 0.00 0.00 3.02
3028 3200 7.827819 TTTAGATCATTTACGACACTCAAGG 57.172 36.000 0.00 0.00 0.00 3.61
3029 3201 4.184629 AGATCATTTACGACACTCAAGGC 58.815 43.478 0.00 0.00 0.00 4.35
3030 3202 2.695359 TCATTTACGACACTCAAGGCC 58.305 47.619 0.00 0.00 0.00 5.19
3031 3203 2.301870 TCATTTACGACACTCAAGGCCT 59.698 45.455 0.00 0.00 0.00 5.19
3032 3204 3.512329 TCATTTACGACACTCAAGGCCTA 59.488 43.478 5.16 0.00 0.00 3.93
3033 3205 4.020928 TCATTTACGACACTCAAGGCCTAA 60.021 41.667 5.16 0.00 0.00 2.69
3034 3206 4.546829 TTTACGACACTCAAGGCCTAAT 57.453 40.909 5.16 0.00 0.00 1.73
3035 3207 4.546829 TTACGACACTCAAGGCCTAATT 57.453 40.909 5.16 0.00 0.00 1.40
3036 3208 5.664294 TTACGACACTCAAGGCCTAATTA 57.336 39.130 5.16 0.00 0.00 1.40
3037 3209 4.546829 ACGACACTCAAGGCCTAATTAA 57.453 40.909 5.16 0.00 0.00 1.40
3038 3210 4.901868 ACGACACTCAAGGCCTAATTAAA 58.098 39.130 5.16 0.00 0.00 1.52
3039 3211 4.935808 ACGACACTCAAGGCCTAATTAAAG 59.064 41.667 5.16 0.00 0.00 1.85
3040 3212 5.175859 CGACACTCAAGGCCTAATTAAAGA 58.824 41.667 5.16 0.00 0.00 2.52
3041 3213 5.292101 CGACACTCAAGGCCTAATTAAAGAG 59.708 44.000 5.16 7.72 0.00 2.85
3042 3214 6.128138 ACACTCAAGGCCTAATTAAAGAGT 57.872 37.500 5.16 8.37 35.66 3.24
3043 3215 6.428385 CACTCAAGGCCTAATTAAAGAGTG 57.572 41.667 5.16 16.13 43.62 3.51
3044 3216 5.940470 CACTCAAGGCCTAATTAAAGAGTGT 59.060 40.000 22.69 0.00 43.92 3.55
3045 3217 6.431234 CACTCAAGGCCTAATTAAAGAGTGTT 59.569 38.462 22.69 0.00 43.92 3.32
3046 3218 7.606456 CACTCAAGGCCTAATTAAAGAGTGTTA 59.394 37.037 22.69 0.00 43.92 2.41
3047 3219 7.606839 ACTCAAGGCCTAATTAAAGAGTGTTAC 59.393 37.037 5.16 0.00 34.17 2.50
3048 3220 6.882678 TCAAGGCCTAATTAAAGAGTGTTACC 59.117 38.462 5.16 0.00 0.00 2.85
3049 3221 5.752650 AGGCCTAATTAAAGAGTGTTACCC 58.247 41.667 1.29 0.00 0.00 3.69
3050 3222 4.885907 GGCCTAATTAAAGAGTGTTACCCC 59.114 45.833 0.00 0.00 0.00 4.95
3051 3223 4.885907 GCCTAATTAAAGAGTGTTACCCCC 59.114 45.833 0.00 0.00 0.00 5.40
3052 3224 5.339778 GCCTAATTAAAGAGTGTTACCCCCT 60.340 44.000 0.00 0.00 0.00 4.79
3053 3225 6.354938 CCTAATTAAAGAGTGTTACCCCCTC 58.645 44.000 0.00 0.00 0.00 4.30
3054 3226 4.857130 ATTAAAGAGTGTTACCCCCTCC 57.143 45.455 0.00 0.00 0.00 4.30
3055 3227 1.369403 AAAGAGTGTTACCCCCTCCC 58.631 55.000 0.00 0.00 0.00 4.30
3056 3228 0.549413 AAGAGTGTTACCCCCTCCCC 60.549 60.000 0.00 0.00 0.00 4.81
3057 3229 1.999568 GAGTGTTACCCCCTCCCCC 61.000 68.421 0.00 0.00 0.00 5.40
3058 3230 2.126603 GTGTTACCCCCTCCCCCT 59.873 66.667 0.00 0.00 0.00 4.79
3059 3231 1.999568 GTGTTACCCCCTCCCCCTC 61.000 68.421 0.00 0.00 0.00 4.30
3060 3232 2.367920 GTTACCCCCTCCCCCTCC 60.368 72.222 0.00 0.00 0.00 4.30
3061 3233 3.714090 TTACCCCCTCCCCCTCCC 61.714 72.222 0.00 0.00 0.00 4.30
3062 3234 4.773222 TACCCCCTCCCCCTCCCT 62.773 72.222 0.00 0.00 0.00 4.20
3065 3237 4.179599 CCCCTCCCCCTCCCTCTC 62.180 77.778 0.00 0.00 0.00 3.20
3066 3238 3.039526 CCCTCCCCCTCCCTCTCT 61.040 72.222 0.00 0.00 0.00 3.10
3067 3239 2.612251 CCTCCCCCTCCCTCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
3068 3240 2.612251 CTCCCCCTCCCTCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
3069 3241 2.018086 CTCCCCCTCCCTCTCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
3070 3242 0.703056 CTCCCCCTCCCTCTCTCCTA 60.703 65.000 0.00 0.00 0.00 2.94
3071 3243 0.254638 TCCCCCTCCCTCTCTCCTAA 60.255 60.000 0.00 0.00 0.00 2.69
3072 3244 0.642710 CCCCCTCCCTCTCTCCTAAA 59.357 60.000 0.00 0.00 0.00 1.85
3073 3245 1.224381 CCCCCTCCCTCTCTCCTAAAT 59.776 57.143 0.00 0.00 0.00 1.40
3074 3246 2.615391 CCCCTCCCTCTCTCCTAAATC 58.385 57.143 0.00 0.00 0.00 2.17
3075 3247 2.181196 CCCCTCCCTCTCTCCTAAATCT 59.819 54.545 0.00 0.00 0.00 2.40
3076 3248 3.403051 CCCCTCCCTCTCTCCTAAATCTA 59.597 52.174 0.00 0.00 0.00 1.98
3077 3249 4.412843 CCCTCCCTCTCTCCTAAATCTAC 58.587 52.174 0.00 0.00 0.00 2.59
3078 3250 4.107311 CCCTCCCTCTCTCCTAAATCTACT 59.893 50.000 0.00 0.00 0.00 2.57
3079 3251 5.321927 CCTCCCTCTCTCCTAAATCTACTC 58.678 50.000 0.00 0.00 0.00 2.59
3080 3252 4.975631 TCCCTCTCTCCTAAATCTACTCG 58.024 47.826 0.00 0.00 0.00 4.18
3081 3253 4.076394 CCCTCTCTCCTAAATCTACTCGG 58.924 52.174 0.00 0.00 0.00 4.63
3082 3254 4.076394 CCTCTCTCCTAAATCTACTCGGG 58.924 52.174 0.00 0.00 0.00 5.14
3083 3255 3.488363 TCTCTCCTAAATCTACTCGGGC 58.512 50.000 0.00 0.00 0.00 6.13
3084 3256 2.226912 CTCTCCTAAATCTACTCGGGCG 59.773 54.545 0.00 0.00 0.00 6.13
3085 3257 1.269998 CTCCTAAATCTACTCGGGCGG 59.730 57.143 0.00 0.00 0.00 6.13
3086 3258 0.319641 CCTAAATCTACTCGGGCGGC 60.320 60.000 0.00 0.00 0.00 6.53
3087 3259 0.387929 CTAAATCTACTCGGGCGGCA 59.612 55.000 12.47 0.00 0.00 5.69
3088 3260 0.103572 TAAATCTACTCGGGCGGCAC 59.896 55.000 12.47 0.00 0.00 5.01
3089 3261 2.588856 AAATCTACTCGGGCGGCACC 62.589 60.000 12.47 0.00 37.93 5.01
3101 3273 4.162690 GGCACCGCCTCCCTGTAG 62.163 72.222 0.00 0.00 46.69 2.74
3102 3274 4.840005 GCACCGCCTCCCTGTAGC 62.840 72.222 0.00 0.00 0.00 3.58
3103 3275 4.162690 CACCGCCTCCCTGTAGCC 62.163 72.222 0.00 0.00 0.00 3.93
3106 3278 3.399181 CGCCTCCCTGTAGCCCAA 61.399 66.667 0.00 0.00 0.00 4.12
3107 3279 2.272471 GCCTCCCTGTAGCCCAAC 59.728 66.667 0.00 0.00 0.00 3.77
3108 3280 2.998949 CCTCCCTGTAGCCCAACC 59.001 66.667 0.00 0.00 0.00 3.77
3109 3281 1.616628 CCTCCCTGTAGCCCAACCT 60.617 63.158 0.00 0.00 0.00 3.50
3110 3282 1.627297 CCTCCCTGTAGCCCAACCTC 61.627 65.000 0.00 0.00 0.00 3.85
3111 3283 1.615424 TCCCTGTAGCCCAACCTCC 60.615 63.158 0.00 0.00 0.00 4.30
3112 3284 2.680370 CCCTGTAGCCCAACCTCCC 61.680 68.421 0.00 0.00 0.00 4.30
3113 3285 2.680370 CCTGTAGCCCAACCTCCCC 61.680 68.421 0.00 0.00 0.00 4.81
3114 3286 1.616628 CTGTAGCCCAACCTCCCCT 60.617 63.158 0.00 0.00 0.00 4.79
3115 3287 1.615424 TGTAGCCCAACCTCCCCTC 60.615 63.158 0.00 0.00 0.00 4.30
3116 3288 1.615424 GTAGCCCAACCTCCCCTCA 60.615 63.158 0.00 0.00 0.00 3.86
3117 3289 1.615424 TAGCCCAACCTCCCCTCAC 60.615 63.158 0.00 0.00 0.00 3.51
3118 3290 2.409984 TAGCCCAACCTCCCCTCACA 62.410 60.000 0.00 0.00 0.00 3.58
3119 3291 2.757077 CCCAACCTCCCCTCACAC 59.243 66.667 0.00 0.00 0.00 3.82
3120 3292 1.847968 CCCAACCTCCCCTCACACT 60.848 63.158 0.00 0.00 0.00 3.55
3121 3293 1.679898 CCAACCTCCCCTCACACTC 59.320 63.158 0.00 0.00 0.00 3.51
3122 3294 1.679898 CAACCTCCCCTCACACTCC 59.320 63.158 0.00 0.00 0.00 3.85
3123 3295 1.539124 AACCTCCCCTCACACTCCC 60.539 63.158 0.00 0.00 0.00 4.30
3124 3296 2.049792 AACCTCCCCTCACACTCCCT 62.050 60.000 0.00 0.00 0.00 4.20
3125 3297 1.687493 CCTCCCCTCACACTCCCTC 60.687 68.421 0.00 0.00 0.00 4.30
3126 3298 1.687493 CTCCCCTCACACTCCCTCC 60.687 68.421 0.00 0.00 0.00 4.30
3127 3299 2.174876 CTCCCCTCACACTCCCTCCT 62.175 65.000 0.00 0.00 0.00 3.69
3128 3300 1.229658 CCCCTCACACTCCCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
3129 3301 1.268283 CCCCTCACACTCCCTCCTTC 61.268 65.000 0.00 0.00 0.00 3.46
3130 3302 1.268283 CCCTCACACTCCCTCCTTCC 61.268 65.000 0.00 0.00 0.00 3.46
3131 3303 0.252467 CCTCACACTCCCTCCTTCCT 60.252 60.000 0.00 0.00 0.00 3.36
3132 3304 1.190643 CTCACACTCCCTCCTTCCTC 58.809 60.000 0.00 0.00 0.00 3.71
3133 3305 0.252284 TCACACTCCCTCCTTCCTCC 60.252 60.000 0.00 0.00 0.00 4.30
3134 3306 1.081277 ACACTCCCTCCTTCCTCCC 59.919 63.158 0.00 0.00 0.00 4.30
3135 3307 1.690985 CACTCCCTCCTTCCTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
3136 3308 2.444895 CTCCCTCCTTCCTCCCCG 60.445 72.222 0.00 0.00 0.00 5.73
3137 3309 4.798682 TCCCTCCTTCCTCCCCGC 62.799 72.222 0.00 0.00 0.00 6.13
3170 3342 4.183686 CCGCCGGCAAAGCTCATG 62.184 66.667 28.98 6.19 0.00 3.07
3171 3343 4.842091 CGCCGGCAAAGCTCATGC 62.842 66.667 28.98 14.38 43.08 4.06
3172 3344 4.842091 GCCGGCAAAGCTCATGCG 62.842 66.667 24.80 11.70 44.75 4.73
3173 3345 4.183686 CCGGCAAAGCTCATGCGG 62.184 66.667 19.09 19.09 44.75 5.69
3174 3346 4.183686 CGGCAAAGCTCATGCGGG 62.184 66.667 18.57 10.37 44.75 6.13
3175 3347 4.503314 GGCAAAGCTCATGCGGGC 62.503 66.667 15.76 2.00 44.75 6.13
3176 3348 4.842091 GCAAAGCTCATGCGGGCG 62.842 66.667 8.50 0.00 45.42 6.13
3177 3349 3.126879 CAAAGCTCATGCGGGCGA 61.127 61.111 0.00 0.00 45.42 5.54
3178 3350 3.127533 AAAGCTCATGCGGGCGAC 61.128 61.111 0.00 0.00 45.42 5.19
3212 3384 4.838486 CTCGTCGGCGACCTGCTC 62.838 72.222 31.86 8.67 42.81 4.26
3215 3387 4.500116 GTCGGCGACCTGCTCCTC 62.500 72.222 28.72 0.05 45.43 3.71
3227 3399 3.842923 CTCCTCCCGCGAGCATGT 61.843 66.667 8.23 0.00 34.49 3.21
3228 3400 4.147449 TCCTCCCGCGAGCATGTG 62.147 66.667 8.23 0.00 34.49 3.21
3240 3412 4.033776 CATGTGGGTGCGGGACCT 62.034 66.667 18.54 0.00 45.33 3.85
3241 3413 4.033776 ATGTGGGTGCGGGACCTG 62.034 66.667 18.54 0.00 45.33 4.00
3246 3418 4.699522 GGTGCGGGACCTGGTGAC 62.700 72.222 11.87 0.00 42.25 3.67
3250 3422 3.075005 CGGGACCTGGTGACGGAT 61.075 66.667 2.82 0.00 39.98 4.18
3251 3423 2.901042 GGGACCTGGTGACGGATC 59.099 66.667 2.82 0.00 39.98 3.36
3252 3424 1.686110 GGGACCTGGTGACGGATCT 60.686 63.158 2.82 0.00 39.98 2.75
3253 3425 1.677637 GGGACCTGGTGACGGATCTC 61.678 65.000 2.82 0.00 39.98 2.75
3254 3426 0.970937 GGACCTGGTGACGGATCTCA 60.971 60.000 2.82 0.00 39.98 3.27
3255 3427 0.895530 GACCTGGTGACGGATCTCAA 59.104 55.000 2.82 0.00 39.98 3.02
3256 3428 0.608640 ACCTGGTGACGGATCTCAAC 59.391 55.000 0.00 0.00 39.98 3.18
3257 3429 0.458543 CCTGGTGACGGATCTCAACG 60.459 60.000 0.00 0.00 39.98 4.10
3258 3430 1.078759 CTGGTGACGGATCTCAACGC 61.079 60.000 0.00 0.00 39.98 4.84
3259 3431 1.810030 GGTGACGGATCTCAACGCC 60.810 63.158 0.00 0.00 0.00 5.68
3260 3432 1.810030 GTGACGGATCTCAACGCCC 60.810 63.158 0.00 0.00 0.00 6.13
3261 3433 2.279810 TGACGGATCTCAACGCCCA 61.280 57.895 0.00 0.00 0.00 5.36
3262 3434 1.079405 GACGGATCTCAACGCCCAA 60.079 57.895 0.00 0.00 0.00 4.12
3263 3435 1.359459 GACGGATCTCAACGCCCAAC 61.359 60.000 0.00 0.00 0.00 3.77
3264 3436 1.375396 CGGATCTCAACGCCCAACA 60.375 57.895 0.00 0.00 0.00 3.33
3265 3437 1.361668 CGGATCTCAACGCCCAACAG 61.362 60.000 0.00 0.00 0.00 3.16
3266 3438 0.036388 GGATCTCAACGCCCAACAGA 60.036 55.000 0.00 0.00 0.00 3.41
3267 3439 1.363744 GATCTCAACGCCCAACAGAG 58.636 55.000 0.00 0.00 0.00 3.35
3268 3440 0.036010 ATCTCAACGCCCAACAGAGG 60.036 55.000 0.00 0.00 0.00 3.69
3269 3441 1.071471 CTCAACGCCCAACAGAGGT 59.929 57.895 0.00 0.00 0.00 3.85
3270 3442 1.227823 TCAACGCCCAACAGAGGTG 60.228 57.895 0.00 0.00 40.87 4.00
3271 3443 1.227823 CAACGCCCAACAGAGGTGA 60.228 57.895 0.00 0.00 38.31 4.02
3272 3444 1.227853 AACGCCCAACAGAGGTGAC 60.228 57.895 0.00 0.00 38.31 3.67
3273 3445 2.738521 CGCCCAACAGAGGTGACG 60.739 66.667 0.00 0.00 37.02 4.35
3274 3446 2.358737 GCCCAACAGAGGTGACGG 60.359 66.667 0.00 0.00 0.00 4.79
3275 3447 2.347490 CCCAACAGAGGTGACGGG 59.653 66.667 0.00 0.00 33.95 5.28
3276 3448 2.347490 CCAACAGAGGTGACGGGG 59.653 66.667 0.00 0.00 0.00 5.73
3277 3449 2.358737 CAACAGAGGTGACGGGGC 60.359 66.667 0.00 0.00 0.00 5.80
3278 3450 2.526873 AACAGAGGTGACGGGGCT 60.527 61.111 0.00 0.00 0.00 5.19
3279 3451 1.229082 AACAGAGGTGACGGGGCTA 60.229 57.895 0.00 0.00 0.00 3.93
3280 3452 1.542187 AACAGAGGTGACGGGGCTAC 61.542 60.000 0.00 0.00 0.00 3.58
3281 3453 1.682684 CAGAGGTGACGGGGCTACT 60.683 63.158 0.00 0.00 0.00 2.57
3282 3454 1.380112 AGAGGTGACGGGGCTACTC 60.380 63.158 0.00 0.00 0.00 2.59
3283 3455 2.754658 AGGTGACGGGGCTACTCG 60.755 66.667 0.00 0.00 0.00 4.18
3284 3456 3.066814 GGTGACGGGGCTACTCGT 61.067 66.667 0.00 0.00 42.67 4.18
3285 3457 2.181021 GTGACGGGGCTACTCGTG 59.819 66.667 0.00 0.00 39.88 4.35
3286 3458 2.282674 TGACGGGGCTACTCGTGT 60.283 61.111 0.00 0.00 39.88 4.49
3287 3459 2.181021 GACGGGGCTACTCGTGTG 59.819 66.667 0.00 0.00 39.88 3.82
3288 3460 3.352338 GACGGGGCTACTCGTGTGG 62.352 68.421 0.00 0.00 39.88 4.17
3289 3461 3.379445 CGGGGCTACTCGTGTGGT 61.379 66.667 0.00 0.00 0.00 4.16
3290 3462 2.264794 GGGGCTACTCGTGTGGTG 59.735 66.667 0.00 0.00 0.00 4.17
3291 3463 2.280552 GGGGCTACTCGTGTGGTGA 61.281 63.158 0.00 0.00 0.00 4.02
3292 3464 1.614241 GGGGCTACTCGTGTGGTGAT 61.614 60.000 0.00 0.00 0.00 3.06
3293 3465 0.460284 GGGCTACTCGTGTGGTGATG 60.460 60.000 0.00 0.00 0.00 3.07
3294 3466 0.460284 GGCTACTCGTGTGGTGATGG 60.460 60.000 0.00 0.00 0.00 3.51
3295 3467 0.460284 GCTACTCGTGTGGTGATGGG 60.460 60.000 0.00 0.00 0.00 4.00
3296 3468 0.175760 CTACTCGTGTGGTGATGGGG 59.824 60.000 0.00 0.00 0.00 4.96
3297 3469 0.543410 TACTCGTGTGGTGATGGGGT 60.543 55.000 0.00 0.00 0.00 4.95
3298 3470 1.375908 CTCGTGTGGTGATGGGGTG 60.376 63.158 0.00 0.00 0.00 4.61
3299 3471 3.055719 CGTGTGGTGATGGGGTGC 61.056 66.667 0.00 0.00 0.00 5.01
3300 3472 2.436109 GTGTGGTGATGGGGTGCT 59.564 61.111 0.00 0.00 0.00 4.40
3301 3473 1.675641 GTGTGGTGATGGGGTGCTC 60.676 63.158 0.00 0.00 0.00 4.26
3302 3474 2.436646 GTGGTGATGGGGTGCTCG 60.437 66.667 0.00 0.00 0.00 5.03
3303 3475 2.606213 TGGTGATGGGGTGCTCGA 60.606 61.111 0.00 0.00 0.00 4.04
3304 3476 2.125106 GGTGATGGGGTGCTCGAC 60.125 66.667 0.00 0.00 0.00 4.20
3305 3477 2.125106 GTGATGGGGTGCTCGACC 60.125 66.667 0.00 0.00 45.28 4.79
3306 3478 2.284625 TGATGGGGTGCTCGACCT 60.285 61.111 0.00 0.00 45.33 3.85
3307 3479 2.187946 GATGGGGTGCTCGACCTG 59.812 66.667 0.00 0.00 45.33 4.00
3308 3480 3.391665 GATGGGGTGCTCGACCTGG 62.392 68.421 0.00 0.00 45.33 4.45
3309 3481 4.954118 TGGGGTGCTCGACCTGGT 62.954 66.667 0.00 0.00 45.33 4.00
3310 3482 4.394712 GGGGTGCTCGACCTGGTG 62.395 72.222 2.82 0.00 45.33 4.17
3312 3484 4.314440 GGTGCTCGACCTGGTGCA 62.314 66.667 2.82 4.93 42.25 4.57
3313 3485 2.740055 GTGCTCGACCTGGTGCAG 60.740 66.667 2.82 0.00 36.03 4.41
3321 3493 2.192979 CCTGGTGCAGGTGTGTGT 59.807 61.111 0.00 0.00 45.82 3.72
3322 3494 2.188829 CCTGGTGCAGGTGTGTGTG 61.189 63.158 0.00 0.00 45.82 3.82
3323 3495 2.828095 TGGTGCAGGTGTGTGTGC 60.828 61.111 0.00 0.00 40.29 4.57
3326 3498 3.748623 TGCAGGTGTGTGTGCATC 58.251 55.556 0.00 0.00 44.70 3.91
3327 3499 1.898094 TGCAGGTGTGTGTGCATCC 60.898 57.895 0.00 0.00 44.70 3.51
3328 3500 1.601759 GCAGGTGTGTGTGCATCCT 60.602 57.895 0.00 0.00 39.62 3.24
3329 3501 1.580845 GCAGGTGTGTGTGCATCCTC 61.581 60.000 0.00 0.00 39.62 3.71
3330 3502 0.250424 CAGGTGTGTGTGCATCCTCA 60.250 55.000 0.00 0.00 32.47 3.86
3331 3503 0.694771 AGGTGTGTGTGCATCCTCAT 59.305 50.000 0.00 0.00 30.23 2.90
3332 3504 1.089920 GGTGTGTGTGCATCCTCATC 58.910 55.000 0.00 0.00 0.00 2.92
3333 3505 0.723414 GTGTGTGTGCATCCTCATCG 59.277 55.000 0.00 0.00 0.00 3.84
3334 3506 0.607620 TGTGTGTGCATCCTCATCGA 59.392 50.000 0.00 0.00 0.00 3.59
3335 3507 1.207811 TGTGTGTGCATCCTCATCGAT 59.792 47.619 0.00 0.00 0.00 3.59
3336 3508 1.596260 GTGTGTGCATCCTCATCGATG 59.404 52.381 19.61 19.61 42.20 3.84
3341 3513 3.881953 CATCCTCATCGATGCTCGT 57.118 52.632 20.81 4.10 41.35 4.18
3342 3514 1.416373 CATCCTCATCGATGCTCGTG 58.584 55.000 20.81 12.34 41.35 4.35
3343 3515 1.035923 ATCCTCATCGATGCTCGTGT 58.964 50.000 20.81 1.62 41.35 4.49
3344 3516 1.675552 TCCTCATCGATGCTCGTGTA 58.324 50.000 20.81 0.36 41.35 2.90
3345 3517 1.333931 TCCTCATCGATGCTCGTGTAC 59.666 52.381 20.81 0.00 41.35 2.90
3346 3518 1.389853 CTCATCGATGCTCGTGTACG 58.610 55.000 20.81 0.00 41.35 3.67
3347 3519 0.730840 TCATCGATGCTCGTGTACGT 59.269 50.000 20.81 0.00 41.35 3.57
3348 3520 0.840103 CATCGATGCTCGTGTACGTG 59.160 55.000 13.37 3.27 41.35 4.49
3349 3521 0.248498 ATCGATGCTCGTGTACGTGG 60.248 55.000 0.00 0.80 41.35 4.94
3350 3522 1.872234 CGATGCTCGTGTACGTGGG 60.872 63.158 0.00 0.00 40.80 4.61
3351 3523 2.125673 ATGCTCGTGTACGTGGGC 60.126 61.111 0.00 2.23 40.80 5.36
3352 3524 2.558554 GATGCTCGTGTACGTGGGCT 62.559 60.000 10.01 0.00 40.80 5.19
3353 3525 2.809601 GCTCGTGTACGTGGGCTG 60.810 66.667 0.00 0.00 40.80 4.85
3354 3526 2.809601 CTCGTGTACGTGGGCTGC 60.810 66.667 0.00 0.00 40.80 5.25
3355 3527 4.367023 TCGTGTACGTGGGCTGCC 62.367 66.667 11.05 11.05 40.80 4.85
3356 3528 4.673298 CGTGTACGTGGGCTGCCA 62.673 66.667 22.05 3.69 34.11 4.92
3357 3529 2.046314 GTGTACGTGGGCTGCCAT 60.046 61.111 22.05 5.11 0.00 4.40
3358 3530 2.046411 TGTACGTGGGCTGCCATG 60.046 61.111 22.05 13.94 0.00 3.66
3359 3531 2.824041 GTACGTGGGCTGCCATGG 60.824 66.667 22.05 7.63 0.00 3.66
3360 3532 3.006133 TACGTGGGCTGCCATGGA 61.006 61.111 22.05 6.09 0.00 3.41
3361 3533 3.030168 TACGTGGGCTGCCATGGAG 62.030 63.158 22.05 11.30 0.00 3.86
3363 3535 4.828296 GTGGGCTGCCATGGAGGG 62.828 72.222 22.05 5.25 38.09 4.30
3371 3543 2.190578 CCATGGAGGGCTTCGTCC 59.809 66.667 5.56 0.00 43.67 4.79
3375 3547 4.303257 GGAGGGCTTCGTCCAAAG 57.697 61.111 0.00 0.00 43.08 2.77
3382 3554 2.596263 GCTTCGTCCAAAGCTTGTAC 57.404 50.000 0.00 0.00 46.51 2.90
3383 3555 1.871039 GCTTCGTCCAAAGCTTGTACA 59.129 47.619 0.00 0.00 46.51 2.90
3384 3556 2.289547 GCTTCGTCCAAAGCTTGTACAA 59.710 45.455 8.28 8.28 46.51 2.41
3385 3557 3.848554 GCTTCGTCCAAAGCTTGTACAAC 60.849 47.826 3.59 2.24 46.51 3.32
3386 3558 2.215196 TCGTCCAAAGCTTGTACAACC 58.785 47.619 3.59 0.00 0.00 3.77
3387 3559 1.944024 CGTCCAAAGCTTGTACAACCA 59.056 47.619 3.59 0.00 0.00 3.67
3388 3560 2.032030 CGTCCAAAGCTTGTACAACCAG 60.032 50.000 3.59 0.00 0.00 4.00
3389 3561 2.293399 GTCCAAAGCTTGTACAACCAGG 59.707 50.000 3.59 2.83 0.00 4.45
3390 3562 2.092103 TCCAAAGCTTGTACAACCAGGT 60.092 45.455 3.59 0.00 0.00 4.00
3391 3563 2.293399 CCAAAGCTTGTACAACCAGGTC 59.707 50.000 3.59 0.00 0.00 3.85
3392 3564 3.214328 CAAAGCTTGTACAACCAGGTCT 58.786 45.455 3.59 0.00 0.00 3.85
3393 3565 4.385825 CAAAGCTTGTACAACCAGGTCTA 58.614 43.478 3.59 0.00 0.00 2.59
3394 3566 3.679824 AGCTTGTACAACCAGGTCTAC 57.320 47.619 3.59 0.00 0.00 2.59
3395 3567 2.302157 AGCTTGTACAACCAGGTCTACC 59.698 50.000 3.59 0.00 0.00 3.18
3396 3568 2.038033 GCTTGTACAACCAGGTCTACCA 59.962 50.000 3.59 0.00 38.89 3.25
3397 3569 3.864921 GCTTGTACAACCAGGTCTACCAG 60.865 52.174 3.59 0.00 38.89 4.00
3398 3570 3.247948 TGTACAACCAGGTCTACCAGA 57.752 47.619 1.26 0.00 38.89 3.86
3399 3571 3.786553 TGTACAACCAGGTCTACCAGAT 58.213 45.455 1.26 0.00 38.89 2.90
3400 3572 3.513912 TGTACAACCAGGTCTACCAGATG 59.486 47.826 1.26 0.49 38.89 2.90
3401 3573 1.909302 ACAACCAGGTCTACCAGATGG 59.091 52.381 1.26 3.27 38.89 3.51
3402 3574 1.210478 CAACCAGGTCTACCAGATGGG 59.790 57.143 3.48 2.73 44.81 4.00
3403 3575 0.326618 ACCAGGTCTACCAGATGGGG 60.327 60.000 3.48 0.00 42.91 4.96
3404 3576 1.056700 CCAGGTCTACCAGATGGGGG 61.057 65.000 3.48 0.00 42.91 5.40
3405 3577 1.384643 AGGTCTACCAGATGGGGGC 60.385 63.158 3.48 0.00 42.91 5.80
3406 3578 2.452937 GGTCTACCAGATGGGGGCC 61.453 68.421 3.48 0.00 42.91 5.80
3407 3579 1.384643 GTCTACCAGATGGGGGCCT 60.385 63.158 0.84 0.00 42.91 5.19
3408 3580 1.074471 TCTACCAGATGGGGGCCTC 60.074 63.158 0.84 0.00 42.91 4.70
3409 3581 2.039831 TACCAGATGGGGGCCTCC 60.040 66.667 17.64 17.64 42.91 4.30
3410 3582 2.914734 CTACCAGATGGGGGCCTCCA 62.915 65.000 31.20 31.20 42.91 3.86
3412 3584 1.464001 CCAGATGGGGGCCTCCATA 60.464 63.158 37.90 11.57 46.67 2.74
3413 3585 1.495579 CCAGATGGGGGCCTCCATAG 61.496 65.000 37.90 29.79 46.67 2.23
3414 3586 1.849823 AGATGGGGGCCTCCATAGC 60.850 63.158 37.90 25.42 46.67 2.97
3415 3587 3.252284 ATGGGGGCCTCCATAGCG 61.252 66.667 37.12 0.00 45.03 4.26
3416 3588 4.815973 TGGGGGCCTCCATAGCGT 62.816 66.667 24.63 0.00 37.22 5.07
3417 3589 4.256180 GGGGGCCTCCATAGCGTG 62.256 72.222 20.04 0.00 37.22 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.709115 GGGTCCCCTAAAAACAGAGGT 59.291 52.381 0.00 0.00 0.00 3.85
2 3 1.005569 GGGGTCCCCTAAAAACAGAGG 59.994 57.143 21.13 0.00 41.34 3.69
4 5 0.694196 CGGGGTCCCCTAAAAACAGA 59.306 55.000 25.34 0.00 42.67 3.41
5 6 0.402887 ACGGGGTCCCCTAAAAACAG 59.597 55.000 25.34 8.98 42.67 3.16
6 7 1.739750 TACGGGGTCCCCTAAAAACA 58.260 50.000 25.34 0.00 42.67 2.83
7 8 4.502105 TTATACGGGGTCCCCTAAAAAC 57.498 45.455 25.34 0.00 42.67 2.43
8 9 5.193325 TGAATTATACGGGGTCCCCTAAAAA 59.807 40.000 25.34 13.83 42.67 1.94
9 10 4.725810 TGAATTATACGGGGTCCCCTAAAA 59.274 41.667 25.34 13.48 42.67 1.52
10 11 4.102996 GTGAATTATACGGGGTCCCCTAAA 59.897 45.833 25.34 13.13 42.67 1.85
11 12 3.647590 GTGAATTATACGGGGTCCCCTAA 59.352 47.826 25.34 16.53 42.67 2.69
12 13 3.242011 GTGAATTATACGGGGTCCCCTA 58.758 50.000 25.34 15.78 42.67 3.53
13 14 2.052468 GTGAATTATACGGGGTCCCCT 58.948 52.381 25.34 14.09 42.67 4.79
14 15 1.072806 GGTGAATTATACGGGGTCCCC 59.927 57.143 18.34 18.34 41.09 4.81
15 16 1.072806 GGGTGAATTATACGGGGTCCC 59.927 57.143 0.00 0.00 0.00 4.46
16 17 1.072806 GGGGTGAATTATACGGGGTCC 59.927 57.143 0.00 0.00 0.00 4.46
17 18 1.770061 TGGGGTGAATTATACGGGGTC 59.230 52.381 0.00 0.00 0.00 4.46
18 19 1.896085 TGGGGTGAATTATACGGGGT 58.104 50.000 0.00 0.00 0.00 4.95
19 20 2.173996 AGTTGGGGTGAATTATACGGGG 59.826 50.000 0.00 0.00 0.00 5.73
20 21 3.570912 AGTTGGGGTGAATTATACGGG 57.429 47.619 0.00 0.00 0.00 5.28
21 22 4.337274 GGAAAGTTGGGGTGAATTATACGG 59.663 45.833 0.00 0.00 0.00 4.02
22 23 5.190677 AGGAAAGTTGGGGTGAATTATACG 58.809 41.667 0.00 0.00 0.00 3.06
23 24 6.184789 TGAGGAAAGTTGGGGTGAATTATAC 58.815 40.000 0.00 0.00 0.00 1.47
24 25 6.395780 TGAGGAAAGTTGGGGTGAATTATA 57.604 37.500 0.00 0.00 0.00 0.98
25 26 5.264395 CTGAGGAAAGTTGGGGTGAATTAT 58.736 41.667 0.00 0.00 0.00 1.28
26 27 4.662278 CTGAGGAAAGTTGGGGTGAATTA 58.338 43.478 0.00 0.00 0.00 1.40
27 28 3.500343 CTGAGGAAAGTTGGGGTGAATT 58.500 45.455 0.00 0.00 0.00 2.17
28 29 2.819348 GCTGAGGAAAGTTGGGGTGAAT 60.819 50.000 0.00 0.00 0.00 2.57
29 30 1.478654 GCTGAGGAAAGTTGGGGTGAA 60.479 52.381 0.00 0.00 0.00 3.18
30 31 0.110486 GCTGAGGAAAGTTGGGGTGA 59.890 55.000 0.00 0.00 0.00 4.02
31 32 0.111253 AGCTGAGGAAAGTTGGGGTG 59.889 55.000 0.00 0.00 0.00 4.61
32 33 0.853530 AAGCTGAGGAAAGTTGGGGT 59.146 50.000 0.00 0.00 0.00 4.95
42 43 4.335416 CCATTTTCCTGTAAAGCTGAGGA 58.665 43.478 0.00 0.00 33.90 3.71
43 44 3.119352 GCCATTTTCCTGTAAAGCTGAGG 60.119 47.826 0.00 0.00 0.00 3.86
52 53 1.006639 GGGAAGGGCCATTTTCCTGTA 59.993 52.381 23.95 0.00 42.03 2.74
53 54 0.252239 GGGAAGGGCCATTTTCCTGT 60.252 55.000 23.95 0.00 42.03 4.00
55 56 0.718408 ATGGGAAGGGCCATTTTCCT 59.282 50.000 23.95 9.67 42.03 3.36
56 57 0.832626 CATGGGAAGGGCCATTTTCC 59.167 55.000 19.41 19.41 41.71 3.13
57 58 1.571955 ACATGGGAAGGGCCATTTTC 58.428 50.000 3.12 4.65 38.95 2.29
60 61 3.040477 CAAATACATGGGAAGGGCCATT 58.960 45.455 0.07 0.07 38.95 3.16
70 71 0.748450 CTGCCAGCCAAATACATGGG 59.252 55.000 0.00 0.00 41.01 4.00
74 75 2.961741 TGTTTTCTGCCAGCCAAATACA 59.038 40.909 0.00 0.00 0.00 2.29
75 76 3.578688 CTGTTTTCTGCCAGCCAAATAC 58.421 45.455 0.00 0.00 0.00 1.89
95 97 1.302832 CGCCCAGAACTTTCAGGCT 60.303 57.895 16.60 0.00 43.03 4.58
154 156 3.033764 TTTGACGCGACGAGTGGC 61.034 61.111 15.93 0.00 39.32 5.01
162 164 1.372004 CGGTAGTGGTTTGACGCGA 60.372 57.895 15.93 0.00 0.00 5.87
165 167 1.134226 GTGTCGGTAGTGGTTTGACG 58.866 55.000 0.00 0.00 32.32 4.35
166 168 1.862827 GTGTGTCGGTAGTGGTTTGAC 59.137 52.381 0.00 0.00 0.00 3.18
167 169 1.481363 TGTGTGTCGGTAGTGGTTTGA 59.519 47.619 0.00 0.00 0.00 2.69
168 170 1.942677 TGTGTGTCGGTAGTGGTTTG 58.057 50.000 0.00 0.00 0.00 2.93
169 171 2.103432 TCATGTGTGTCGGTAGTGGTTT 59.897 45.455 0.00 0.00 0.00 3.27
176 178 0.606096 CAGGGTCATGTGTGTCGGTA 59.394 55.000 0.00 0.00 0.00 4.02
177 179 1.371183 CAGGGTCATGTGTGTCGGT 59.629 57.895 0.00 0.00 0.00 4.69
179 181 1.301637 TGCAGGGTCATGTGTGTCG 60.302 57.895 0.00 0.00 0.00 4.35
182 184 2.327343 CGGTGCAGGGTCATGTGTG 61.327 63.158 0.00 0.00 0.00 3.82
185 187 4.722700 GGCGGTGCAGGGTCATGT 62.723 66.667 0.00 0.00 0.00 3.21
187 189 4.722700 GTGGCGGTGCAGGGTCAT 62.723 66.667 0.00 0.00 0.00 3.06
308 310 7.574607 ACTTTCCTCAGTTCCTTTCTCTAAAA 58.425 34.615 0.00 0.00 0.00 1.52
317 319 3.974642 ACACCTACTTTCCTCAGTTCCTT 59.025 43.478 0.00 0.00 0.00 3.36
318 320 3.325135 CACACCTACTTTCCTCAGTTCCT 59.675 47.826 0.00 0.00 0.00 3.36
328 330 6.148976 GGGTAAATTGTCTCACACCTACTTTC 59.851 42.308 0.00 0.00 0.00 2.62
361 363 6.692809 AAGTCGTCTTACGGGATGTCCCTA 62.693 50.000 15.79 5.11 42.07 3.53
363 365 3.786523 AAGTCGTCTTACGGGATGTCCC 61.787 54.545 8.09 8.09 42.81 4.46
372 374 4.089065 CCTTTCCGTAAAAGTCGTCTTACG 59.911 45.833 9.72 9.72 46.23 3.18
377 379 2.759191 ACCCTTTCCGTAAAAGTCGTC 58.241 47.619 6.74 0.00 42.46 4.20
383 385 3.140623 CTCCGAAACCCTTTCCGTAAAA 58.859 45.455 0.00 0.00 36.30 1.52
390 392 3.545366 ATAGCTCTCCGAAACCCTTTC 57.455 47.619 0.00 0.00 36.32 2.62
391 393 3.610911 CAATAGCTCTCCGAAACCCTTT 58.389 45.455 0.00 0.00 0.00 3.11
399 401 1.137086 GCAACTCCAATAGCTCTCCGA 59.863 52.381 0.00 0.00 0.00 4.55
400 402 1.137872 AGCAACTCCAATAGCTCTCCG 59.862 52.381 0.00 0.00 30.05 4.63
418 420 6.529220 AGAATAGTGATTGGATGGTTAGAGC 58.471 40.000 0.00 0.00 0.00 4.09
419 421 7.961351 AGAGAATAGTGATTGGATGGTTAGAG 58.039 38.462 0.00 0.00 0.00 2.43
464 474 4.991776 TGGATTTGTGGTCCTATGTTCAA 58.008 39.130 0.00 0.00 36.68 2.69
475 485 3.897141 AAAACCGTTTGGATTTGTGGT 57.103 38.095 0.00 0.00 38.66 4.16
479 489 6.198216 CAGAGTGTAAAAACCGTTTGGATTTG 59.802 38.462 0.00 0.00 39.12 2.32
586 603 9.638239 GATTCTAATCAAGCTTAATCTCTCGAT 57.362 33.333 0.00 0.00 35.49 3.59
599 657 1.876156 CCCGCCAGATTCTAATCAAGC 59.124 52.381 5.55 6.27 37.89 4.01
603 661 1.056660 TCCCCCGCCAGATTCTAATC 58.943 55.000 0.00 0.00 35.64 1.75
612 670 2.045926 CTTCACTTCCCCCGCCAG 60.046 66.667 0.00 0.00 0.00 4.85
686 744 0.657659 CGACCGCGACAGCATACTAG 60.658 60.000 8.23 0.00 45.49 2.57
731 789 0.107897 AATCCATACGTCCGCTTGCA 60.108 50.000 0.00 0.00 0.00 4.08
747 808 1.062587 CAACAACCTCGATCGGCAATC 59.937 52.381 16.41 0.00 0.00 2.67
859 927 2.355444 GAGCGTGAGGACCTAAGTAGAC 59.645 54.545 0.00 0.00 0.00 2.59
862 930 2.089980 GTGAGCGTGAGGACCTAAGTA 58.910 52.381 0.00 0.00 0.00 2.24
890 958 4.435518 CCGTCCGTTCAGATGTAACAAATG 60.436 45.833 0.00 0.00 0.00 2.32
1419 1516 3.884350 TCGCGCGCGTAGGAGAAT 61.884 61.111 46.54 0.00 40.74 2.40
1500 1597 0.389556 CAGGATGATCGGCGATCCAG 60.390 60.000 38.11 22.98 40.72 3.86
1613 1710 4.704833 TGAGGTTCAGGCCTGCGC 62.705 66.667 28.91 21.12 39.34 6.09
1616 1713 1.001641 CCCTTGAGGTTCAGGCCTG 60.002 63.158 27.87 27.87 39.34 4.85
1833 1948 2.040544 CAGGATGTGCACCGGGTTC 61.041 63.158 15.69 0.00 0.00 3.62
2016 2140 4.813526 CTCACCTCCGCGTCGTCG 62.814 72.222 4.92 0.00 40.37 5.12
2430 2554 2.930385 TAGTACTCCGTCGGCCGAGG 62.930 65.000 34.92 34.92 39.56 4.63
2432 2556 0.392706 TATAGTACTCCGTCGGCCGA 59.607 55.000 27.28 27.28 39.56 5.54
2433 2557 0.514691 GTATAGTACTCCGTCGGCCG 59.485 60.000 22.12 22.12 0.00 6.13
2435 2559 1.069364 GCAGTATAGTACTCCGTCGGC 60.069 57.143 6.34 0.00 36.76 5.54
2436 2560 2.216046 TGCAGTATAGTACTCCGTCGG 58.784 52.381 4.39 4.39 36.76 4.79
2439 2563 4.635223 TCGTATGCAGTATAGTACTCCGT 58.365 43.478 0.00 0.00 36.76 4.69
2441 2565 6.648310 TGTACTCGTATGCAGTATAGTACTCC 59.352 42.308 22.34 7.17 36.76 3.85
2442 2566 7.649370 TGTACTCGTATGCAGTATAGTACTC 57.351 40.000 22.34 7.65 36.76 2.59
2443 2567 8.442632 TTTGTACTCGTATGCAGTATAGTACT 57.557 34.615 22.34 0.00 40.28 2.73
2444 2568 9.114965 CATTTGTACTCGTATGCAGTATAGTAC 57.885 37.037 18.27 18.27 33.61 2.73
2445 2569 9.059260 TCATTTGTACTCGTATGCAGTATAGTA 57.941 33.333 0.00 0.00 0.00 1.82
2446 2570 7.937649 TCATTTGTACTCGTATGCAGTATAGT 58.062 34.615 0.00 0.00 0.00 2.12
2447 2571 8.076781 ACTCATTTGTACTCGTATGCAGTATAG 58.923 37.037 0.00 0.00 0.00 1.31
2474 2622 7.041780 GCACTGATCCAAATCGAATTATACAGT 60.042 37.037 0.00 0.00 34.39 3.55
2475 2623 7.172190 AGCACTGATCCAAATCGAATTATACAG 59.828 37.037 0.00 0.00 34.39 2.74
2494 2648 4.160252 TGATGTGAACAGCTATAGCACTGA 59.840 41.667 26.07 1.78 45.16 3.41
2498 2652 6.114767 TGAAATGATGTGAACAGCTATAGCA 58.885 36.000 26.07 4.29 45.16 3.49
2603 2766 2.484264 CGTGGAAAGACTCAATGGAACC 59.516 50.000 0.00 0.00 0.00 3.62
2611 2774 1.511850 CATGCACGTGGAAAGACTCA 58.488 50.000 15.51 1.83 0.00 3.41
2623 2786 2.509336 GTCTCGACCCCATGCACG 60.509 66.667 0.00 0.00 0.00 5.34
2624 2787 2.125106 GGTCTCGACCCCATGCAC 60.125 66.667 4.73 0.00 45.68 4.57
2654 2821 2.684374 TGTATGCAGACGTACGTGGTAT 59.316 45.455 28.16 22.41 40.57 2.73
2657 2824 1.135489 ACTGTATGCAGACGTACGTGG 60.135 52.381 28.16 18.36 45.28 4.94
2669 2836 4.151689 TGTTTTCGCTAACTGACTGTATGC 59.848 41.667 0.00 0.00 0.00 3.14
2704 2871 0.235926 GGTTGCTCACTCTTTCGTGC 59.764 55.000 0.00 0.00 34.92 5.34
2705 2872 0.868406 GGGTTGCTCACTCTTTCGTG 59.132 55.000 0.00 0.00 36.25 4.35
2758 2925 2.684001 TCGCTTCATTCGTACCCATT 57.316 45.000 0.00 0.00 0.00 3.16
2766 2933 3.194861 TCCCAGTTTATCGCTTCATTCG 58.805 45.455 0.00 0.00 0.00 3.34
2775 2942 3.808728 ACCATGTCATCCCAGTTTATCG 58.191 45.455 0.00 0.00 0.00 2.92
2776 2943 6.174720 TCTACCATGTCATCCCAGTTTATC 57.825 41.667 0.00 0.00 0.00 1.75
2778 2945 6.575244 AATCTACCATGTCATCCCAGTTTA 57.425 37.500 0.00 0.00 0.00 2.01
2780 2947 6.329986 TCATAATCTACCATGTCATCCCAGTT 59.670 38.462 0.00 0.00 0.00 3.16
2781 2948 5.846164 TCATAATCTACCATGTCATCCCAGT 59.154 40.000 0.00 0.00 0.00 4.00
2782 2949 6.364568 TCATAATCTACCATGTCATCCCAG 57.635 41.667 0.00 0.00 0.00 4.45
2783 2950 6.296605 CCATCATAATCTACCATGTCATCCCA 60.297 42.308 0.00 0.00 0.00 4.37
2794 2961 6.202954 GCTGTTGTACACCATCATAATCTACC 59.797 42.308 0.00 0.00 0.00 3.18
2796 2963 5.983118 CGCTGTTGTACACCATCATAATCTA 59.017 40.000 0.00 0.00 0.00 1.98
2812 2979 0.874607 GTCACCTTCGTCGCTGTTGT 60.875 55.000 0.00 0.00 0.00 3.32
2827 2994 4.068599 CAAGGGGAAGAAGAAGAAGTCAC 58.931 47.826 0.00 0.00 0.00 3.67
2828 2995 3.073062 CCAAGGGGAAGAAGAAGAAGTCA 59.927 47.826 0.00 0.00 35.59 3.41
2831 2998 3.329225 AGACCAAGGGGAAGAAGAAGAAG 59.671 47.826 0.00 0.00 38.05 2.85
2832 2999 3.327439 AGACCAAGGGGAAGAAGAAGAA 58.673 45.455 0.00 0.00 38.05 2.52
2833 3000 2.907042 GAGACCAAGGGGAAGAAGAAGA 59.093 50.000 0.00 0.00 38.05 2.87
2850 3020 5.795441 GCAAACAATTTGAGTAATCGGAGAC 59.205 40.000 2.79 0.00 41.05 3.36
2860 3030 7.042791 CGGTTTAATTCAGCAAACAATTTGAGT 60.043 33.333 2.79 0.00 43.26 3.41
2861 3031 7.168972 TCGGTTTAATTCAGCAAACAATTTGAG 59.831 33.333 2.79 0.00 43.26 3.02
2863 3033 7.171447 TCGGTTTAATTCAGCAAACAATTTG 57.829 32.000 4.44 0.00 43.44 2.32
2864 3034 7.778470 TTCGGTTTAATTCAGCAAACAATTT 57.222 28.000 4.44 0.00 36.56 1.82
2874 3045 6.820470 TTTGCAAGTTTCGGTTTAATTCAG 57.180 33.333 0.00 0.00 0.00 3.02
2877 3048 9.497030 GAAAATTTTGCAAGTTTCGGTTTAATT 57.503 25.926 8.47 5.09 37.27 1.40
2881 3052 6.403092 CCTGAAAATTTTGCAAGTTTCGGTTT 60.403 34.615 24.61 12.02 45.69 3.27
2885 3056 5.290643 TGTCCTGAAAATTTTGCAAGTTTCG 59.709 36.000 8.47 15.37 45.78 3.46
2889 3060 5.916318 TCATGTCCTGAAAATTTTGCAAGT 58.084 33.333 8.47 0.00 0.00 3.16
2891 3062 5.984926 GTCTCATGTCCTGAAAATTTTGCAA 59.015 36.000 8.47 0.00 32.14 4.08
2892 3063 5.509501 GGTCTCATGTCCTGAAAATTTTGCA 60.510 40.000 8.47 5.64 32.14 4.08
2920 3091 5.296748 ACATTTTTCATTAGCCCACACAAC 58.703 37.500 0.00 0.00 0.00 3.32
2925 3096 8.872845 CAATAGAAACATTTTTCATTAGCCCAC 58.127 33.333 7.08 0.00 43.29 4.61
2928 3099 7.612266 CGCAATAGAAACATTTTTCATTAGCC 58.388 34.615 7.08 0.00 43.29 3.93
2929 3100 7.113027 GCGCAATAGAAACATTTTTCATTAGC 58.887 34.615 0.30 8.96 43.29 3.09
2943 3114 2.627945 AGACCATTCGCGCAATAGAAA 58.372 42.857 8.75 0.00 0.00 2.52
2953 3124 5.731263 GTCACGTTAAATTAAGACCATTCGC 59.269 40.000 0.00 0.00 0.00 4.70
2954 3125 6.735063 GTGTCACGTTAAATTAAGACCATTCG 59.265 38.462 0.00 0.00 0.00 3.34
2955 3126 7.803724 AGTGTCACGTTAAATTAAGACCATTC 58.196 34.615 0.00 0.00 0.00 2.67
2961 3132 8.367943 TGCTTAAGTGTCACGTTAAATTAAGA 57.632 30.769 18.55 7.42 32.91 2.10
2964 3136 6.930164 TCCTGCTTAAGTGTCACGTTAAATTA 59.070 34.615 4.02 0.00 0.00 1.40
2966 3138 5.302360 TCCTGCTTAAGTGTCACGTTAAAT 58.698 37.500 4.02 0.00 0.00 1.40
2970 3142 2.902705 TCCTGCTTAAGTGTCACGTT 57.097 45.000 4.02 0.00 0.00 3.99
2982 3154 2.242965 TGGACAATGGATCATCCTGCTT 59.757 45.455 4.96 0.00 37.46 3.91
2983 3155 1.848388 TGGACAATGGATCATCCTGCT 59.152 47.619 4.96 0.00 37.46 4.24
2984 3156 2.353357 TGGACAATGGATCATCCTGC 57.647 50.000 4.96 0.00 37.46 4.85
2985 3157 6.301486 TCTAAATGGACAATGGATCATCCTG 58.699 40.000 4.96 0.00 37.46 3.86
2986 3158 6.520021 TCTAAATGGACAATGGATCATCCT 57.480 37.500 4.96 0.00 37.46 3.24
2987 3159 6.944290 TGATCTAAATGGACAATGGATCATCC 59.056 38.462 0.00 0.00 34.96 3.51
2988 3160 7.991084 TGATCTAAATGGACAATGGATCATC 57.009 36.000 11.00 0.00 34.96 2.92
2989 3161 8.951614 AATGATCTAAATGGACAATGGATCAT 57.048 30.769 16.95 16.95 45.39 2.45
2990 3162 8.771521 AAATGATCTAAATGGACAATGGATCA 57.228 30.769 14.89 14.89 41.05 2.92
2992 3164 8.786898 CGTAAATGATCTAAATGGACAATGGAT 58.213 33.333 0.00 0.00 0.00 3.41
2993 3165 7.990314 TCGTAAATGATCTAAATGGACAATGGA 59.010 33.333 0.00 0.00 0.00 3.41
2994 3166 8.070171 GTCGTAAATGATCTAAATGGACAATGG 58.930 37.037 0.00 0.00 0.00 3.16
2995 3167 8.611757 TGTCGTAAATGATCTAAATGGACAATG 58.388 33.333 0.00 0.00 0.00 2.82
2996 3168 8.612619 GTGTCGTAAATGATCTAAATGGACAAT 58.387 33.333 8.14 0.00 33.14 2.71
2997 3169 7.822334 AGTGTCGTAAATGATCTAAATGGACAA 59.178 33.333 8.14 0.00 33.14 3.18
2998 3170 7.327975 AGTGTCGTAAATGATCTAAATGGACA 58.672 34.615 0.00 0.00 0.00 4.02
2999 3171 7.491372 TGAGTGTCGTAAATGATCTAAATGGAC 59.509 37.037 0.00 0.00 0.00 4.02
3000 3172 7.552459 TGAGTGTCGTAAATGATCTAAATGGA 58.448 34.615 0.00 0.00 0.00 3.41
3001 3173 7.770801 TGAGTGTCGTAAATGATCTAAATGG 57.229 36.000 0.00 0.00 0.00 3.16
3002 3174 8.331022 CCTTGAGTGTCGTAAATGATCTAAATG 58.669 37.037 0.00 0.00 0.00 2.32
3003 3175 7.011482 GCCTTGAGTGTCGTAAATGATCTAAAT 59.989 37.037 0.00 0.00 0.00 1.40
3004 3176 6.312918 GCCTTGAGTGTCGTAAATGATCTAAA 59.687 38.462 0.00 0.00 0.00 1.85
3005 3177 5.810587 GCCTTGAGTGTCGTAAATGATCTAA 59.189 40.000 0.00 0.00 0.00 2.10
3006 3178 5.348986 GCCTTGAGTGTCGTAAATGATCTA 58.651 41.667 0.00 0.00 0.00 1.98
3007 3179 4.184629 GCCTTGAGTGTCGTAAATGATCT 58.815 43.478 0.00 0.00 0.00 2.75
3008 3180 3.309954 GGCCTTGAGTGTCGTAAATGATC 59.690 47.826 0.00 0.00 0.00 2.92
3009 3181 3.055094 AGGCCTTGAGTGTCGTAAATGAT 60.055 43.478 0.00 0.00 0.00 2.45
3010 3182 2.301870 AGGCCTTGAGTGTCGTAAATGA 59.698 45.455 0.00 0.00 0.00 2.57
3011 3183 2.699954 AGGCCTTGAGTGTCGTAAATG 58.300 47.619 0.00 0.00 0.00 2.32
3012 3184 4.546829 TTAGGCCTTGAGTGTCGTAAAT 57.453 40.909 12.58 0.00 0.00 1.40
3013 3185 4.546829 ATTAGGCCTTGAGTGTCGTAAA 57.453 40.909 12.58 0.00 0.00 2.01
3014 3186 4.546829 AATTAGGCCTTGAGTGTCGTAA 57.453 40.909 12.58 0.00 0.00 3.18
3015 3187 5.664294 TTAATTAGGCCTTGAGTGTCGTA 57.336 39.130 12.58 0.00 0.00 3.43
3016 3188 4.546829 TTAATTAGGCCTTGAGTGTCGT 57.453 40.909 12.58 0.00 0.00 4.34
3017 3189 5.175859 TCTTTAATTAGGCCTTGAGTGTCG 58.824 41.667 12.58 0.00 0.00 4.35
3018 3190 6.092807 CACTCTTTAATTAGGCCTTGAGTGTC 59.907 42.308 12.58 0.00 42.71 3.67
3019 3191 5.940470 CACTCTTTAATTAGGCCTTGAGTGT 59.060 40.000 12.58 4.75 42.71 3.55
3020 3192 6.428385 CACTCTTTAATTAGGCCTTGAGTG 57.572 41.667 12.58 17.84 42.29 3.51
3021 3193 6.128138 ACACTCTTTAATTAGGCCTTGAGT 57.872 37.500 12.58 10.63 34.38 3.41
3022 3194 7.065923 GGTAACACTCTTTAATTAGGCCTTGAG 59.934 40.741 12.58 10.00 0.00 3.02
3023 3195 6.882678 GGTAACACTCTTTAATTAGGCCTTGA 59.117 38.462 12.58 0.00 0.00 3.02
3024 3196 6.095021 GGGTAACACTCTTTAATTAGGCCTTG 59.905 42.308 12.58 0.30 39.74 3.61
3025 3197 6.185511 GGGTAACACTCTTTAATTAGGCCTT 58.814 40.000 12.58 0.00 39.74 4.35
3026 3198 5.339778 GGGGTAACACTCTTTAATTAGGCCT 60.340 44.000 11.78 11.78 36.63 5.19
3027 3199 4.885907 GGGGTAACACTCTTTAATTAGGCC 59.114 45.833 0.00 0.00 36.63 5.19
3028 3200 4.885907 GGGGGTAACACTCTTTAATTAGGC 59.114 45.833 0.00 0.00 42.80 3.93
3029 3201 6.323210 AGGGGGTAACACTCTTTAATTAGG 57.677 41.667 0.00 0.00 42.80 2.69
3030 3202 6.354938 GGAGGGGGTAACACTCTTTAATTAG 58.645 44.000 2.30 0.00 42.80 1.73
3031 3203 5.192321 GGGAGGGGGTAACACTCTTTAATTA 59.808 44.000 2.30 0.00 42.80 1.40
3032 3204 4.017775 GGGAGGGGGTAACACTCTTTAATT 60.018 45.833 2.30 0.00 42.80 1.40
3033 3205 3.526430 GGGAGGGGGTAACACTCTTTAAT 59.474 47.826 2.30 0.00 42.80 1.40
3034 3206 2.914941 GGGAGGGGGTAACACTCTTTAA 59.085 50.000 2.30 0.00 42.80 1.52
3035 3207 2.554563 GGGAGGGGGTAACACTCTTTA 58.445 52.381 2.30 0.00 42.80 1.85
3036 3208 1.369403 GGGAGGGGGTAACACTCTTT 58.631 55.000 2.30 0.00 42.80 2.52
3037 3209 0.549413 GGGGAGGGGGTAACACTCTT 60.549 60.000 2.30 0.00 42.80 2.85
3038 3210 1.082392 GGGGAGGGGGTAACACTCT 59.918 63.158 2.30 0.00 42.80 3.24
3039 3211 1.999568 GGGGGAGGGGGTAACACTC 61.000 68.421 0.00 0.00 42.80 3.51
3040 3212 2.126603 GGGGGAGGGGGTAACACT 59.873 66.667 0.00 0.00 42.80 3.55
3041 3213 1.999568 GAGGGGGAGGGGGTAACAC 61.000 68.421 0.00 0.00 42.03 3.32
3042 3214 2.457794 GAGGGGGAGGGGGTAACA 59.542 66.667 0.00 0.00 39.74 2.41
3043 3215 2.367920 GGAGGGGGAGGGGGTAAC 60.368 72.222 0.00 0.00 0.00 2.50
3044 3216 3.714090 GGGAGGGGGAGGGGGTAA 61.714 72.222 0.00 0.00 0.00 2.85
3045 3217 4.773222 AGGGAGGGGGAGGGGGTA 62.773 72.222 0.00 0.00 0.00 3.69
3048 3220 4.179599 GAGAGGGAGGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
3049 3221 3.039526 AGAGAGGGAGGGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
3050 3222 2.612251 GAGAGAGGGAGGGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
3051 3223 0.703056 TAGGAGAGAGGGAGGGGGAG 60.703 65.000 0.00 0.00 0.00 4.30
3052 3224 0.254638 TTAGGAGAGAGGGAGGGGGA 60.255 60.000 0.00 0.00 0.00 4.81
3053 3225 0.642710 TTTAGGAGAGAGGGAGGGGG 59.357 60.000 0.00 0.00 0.00 5.40
3054 3226 2.181196 AGATTTAGGAGAGAGGGAGGGG 59.819 54.545 0.00 0.00 0.00 4.79
3055 3227 3.628832 AGATTTAGGAGAGAGGGAGGG 57.371 52.381 0.00 0.00 0.00 4.30
3056 3228 5.321927 GAGTAGATTTAGGAGAGAGGGAGG 58.678 50.000 0.00 0.00 0.00 4.30
3057 3229 5.001232 CGAGTAGATTTAGGAGAGAGGGAG 58.999 50.000 0.00 0.00 0.00 4.30
3058 3230 4.202482 CCGAGTAGATTTAGGAGAGAGGGA 60.202 50.000 0.00 0.00 0.00 4.20
3059 3231 4.076394 CCGAGTAGATTTAGGAGAGAGGG 58.924 52.174 0.00 0.00 0.00 4.30
3060 3232 4.076394 CCCGAGTAGATTTAGGAGAGAGG 58.924 52.174 0.00 0.00 0.00 3.69
3061 3233 3.504520 GCCCGAGTAGATTTAGGAGAGAG 59.495 52.174 0.00 0.00 0.00 3.20
3062 3234 3.488363 GCCCGAGTAGATTTAGGAGAGA 58.512 50.000 0.00 0.00 0.00 3.10
3063 3235 2.226912 CGCCCGAGTAGATTTAGGAGAG 59.773 54.545 0.00 0.00 0.00 3.20
3064 3236 2.228059 CGCCCGAGTAGATTTAGGAGA 58.772 52.381 0.00 0.00 0.00 3.71
3065 3237 1.269998 CCGCCCGAGTAGATTTAGGAG 59.730 57.143 0.00 0.00 0.00 3.69
3066 3238 1.325355 CCGCCCGAGTAGATTTAGGA 58.675 55.000 0.00 0.00 0.00 2.94
3067 3239 0.319641 GCCGCCCGAGTAGATTTAGG 60.320 60.000 0.00 0.00 0.00 2.69
3068 3240 0.387929 TGCCGCCCGAGTAGATTTAG 59.612 55.000 0.00 0.00 0.00 1.85
3069 3241 0.103572 GTGCCGCCCGAGTAGATTTA 59.896 55.000 0.00 0.00 0.00 1.40
3070 3242 1.153429 GTGCCGCCCGAGTAGATTT 60.153 57.895 0.00 0.00 0.00 2.17
3071 3243 2.499685 GTGCCGCCCGAGTAGATT 59.500 61.111 0.00 0.00 0.00 2.40
3072 3244 3.537874 GGTGCCGCCCGAGTAGAT 61.538 66.667 0.00 0.00 0.00 1.98
3085 3257 4.840005 GCTACAGGGAGGCGGTGC 62.840 72.222 0.00 0.00 0.00 5.01
3086 3258 4.162690 GGCTACAGGGAGGCGGTG 62.163 72.222 0.00 0.00 31.65 4.94
3089 3261 3.399181 TTGGGCTACAGGGAGGCG 61.399 66.667 0.00 0.00 42.82 5.52
3090 3262 2.272471 GTTGGGCTACAGGGAGGC 59.728 66.667 0.00 0.00 41.20 4.70
3091 3263 1.616628 AGGTTGGGCTACAGGGAGG 60.617 63.158 0.00 0.00 0.00 4.30
3092 3264 1.627297 GGAGGTTGGGCTACAGGGAG 61.627 65.000 0.00 0.00 0.00 4.30
3093 3265 1.615424 GGAGGTTGGGCTACAGGGA 60.615 63.158 0.00 0.00 0.00 4.20
3094 3266 2.680370 GGGAGGTTGGGCTACAGGG 61.680 68.421 0.00 0.00 0.00 4.45
3095 3267 2.680370 GGGGAGGTTGGGCTACAGG 61.680 68.421 0.00 0.00 0.00 4.00
3096 3268 1.616628 AGGGGAGGTTGGGCTACAG 60.617 63.158 0.00 0.00 0.00 2.74
3097 3269 1.615424 GAGGGGAGGTTGGGCTACA 60.615 63.158 0.00 0.00 0.00 2.74
3098 3270 1.615424 TGAGGGGAGGTTGGGCTAC 60.615 63.158 0.00 0.00 0.00 3.58
3099 3271 1.615424 GTGAGGGGAGGTTGGGCTA 60.615 63.158 0.00 0.00 0.00 3.93
3100 3272 2.936032 GTGAGGGGAGGTTGGGCT 60.936 66.667 0.00 0.00 0.00 5.19
3101 3273 3.256960 TGTGAGGGGAGGTTGGGC 61.257 66.667 0.00 0.00 0.00 5.36
3102 3274 1.842381 GAGTGTGAGGGGAGGTTGGG 61.842 65.000 0.00 0.00 0.00 4.12
3103 3275 1.679898 GAGTGTGAGGGGAGGTTGG 59.320 63.158 0.00 0.00 0.00 3.77
3104 3276 1.679898 GGAGTGTGAGGGGAGGTTG 59.320 63.158 0.00 0.00 0.00 3.77
3105 3277 1.539124 GGGAGTGTGAGGGGAGGTT 60.539 63.158 0.00 0.00 0.00 3.50
3106 3278 2.122954 GGGAGTGTGAGGGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
3107 3279 1.687493 GAGGGAGTGTGAGGGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
3108 3280 1.687493 GGAGGGAGTGTGAGGGGAG 60.687 68.421 0.00 0.00 0.00 4.30
3109 3281 1.751143 AAGGAGGGAGTGTGAGGGGA 61.751 60.000 0.00 0.00 0.00 4.81
3110 3282 1.229658 AAGGAGGGAGTGTGAGGGG 60.230 63.158 0.00 0.00 0.00 4.79
3111 3283 1.268283 GGAAGGAGGGAGTGTGAGGG 61.268 65.000 0.00 0.00 0.00 4.30
3112 3284 0.252467 AGGAAGGAGGGAGTGTGAGG 60.252 60.000 0.00 0.00 0.00 3.86
3113 3285 1.190643 GAGGAAGGAGGGAGTGTGAG 58.809 60.000 0.00 0.00 0.00 3.51
3114 3286 0.252284 GGAGGAAGGAGGGAGTGTGA 60.252 60.000 0.00 0.00 0.00 3.58
3115 3287 1.268283 GGGAGGAAGGAGGGAGTGTG 61.268 65.000 0.00 0.00 0.00 3.82
3116 3288 1.081277 GGGAGGAAGGAGGGAGTGT 59.919 63.158 0.00 0.00 0.00 3.55
3117 3289 1.690985 GGGGAGGAAGGAGGGAGTG 60.691 68.421 0.00 0.00 0.00 3.51
3118 3290 2.788589 GGGGAGGAAGGAGGGAGT 59.211 66.667 0.00 0.00 0.00 3.85
3119 3291 2.444895 CGGGGAGGAAGGAGGGAG 60.445 72.222 0.00 0.00 0.00 4.30
3120 3292 4.798682 GCGGGGAGGAAGGAGGGA 62.799 72.222 0.00 0.00 0.00 4.20
3153 3325 4.183686 CATGAGCTTTGCCGGCGG 62.184 66.667 24.35 24.35 34.52 6.13
3154 3326 4.842091 GCATGAGCTTTGCCGGCG 62.842 66.667 23.90 8.96 37.91 6.46
3155 3327 4.842091 CGCATGAGCTTTGCCGGC 62.842 66.667 22.73 22.73 39.10 6.13
3156 3328 4.183686 CCGCATGAGCTTTGCCGG 62.184 66.667 14.73 14.45 39.10 6.13
3157 3329 4.183686 CCCGCATGAGCTTTGCCG 62.184 66.667 14.73 9.55 39.10 5.69
3158 3330 4.503314 GCCCGCATGAGCTTTGCC 62.503 66.667 14.73 0.73 39.10 4.52
3159 3331 4.842091 CGCCCGCATGAGCTTTGC 62.842 66.667 11.46 11.46 39.10 3.68
3160 3332 3.126879 TCGCCCGCATGAGCTTTG 61.127 61.111 0.00 0.00 39.10 2.77
3161 3333 3.127533 GTCGCCCGCATGAGCTTT 61.128 61.111 0.00 0.00 39.10 3.51
3164 3336 3.841379 TATCGTCGCCCGCATGAGC 62.841 63.158 0.00 0.00 36.19 4.26
3165 3337 1.730902 CTATCGTCGCCCGCATGAG 60.731 63.158 0.00 0.00 36.19 2.90
3166 3338 2.335011 CTATCGTCGCCCGCATGA 59.665 61.111 0.00 0.00 36.19 3.07
3167 3339 3.406361 GCTATCGTCGCCCGCATG 61.406 66.667 0.00 0.00 36.19 4.06
3198 3370 4.500116 GAGGAGCAGGTCGCCGAC 62.500 72.222 9.15 9.15 44.04 4.79
3210 3382 3.842923 ACATGCTCGCGGGAGGAG 61.843 66.667 28.26 20.72 44.30 3.69
3211 3383 4.147449 CACATGCTCGCGGGAGGA 62.147 66.667 28.26 26.75 45.22 3.71
3220 3392 4.408821 TCCCGCACCCACATGCTC 62.409 66.667 0.00 0.00 43.80 4.26
3221 3393 4.722700 GTCCCGCACCCACATGCT 62.723 66.667 0.00 0.00 43.80 3.79
3233 3405 3.075005 ATCCGTCACCAGGTCCCG 61.075 66.667 0.00 0.00 0.00 5.14
3234 3406 1.677637 GAGATCCGTCACCAGGTCCC 61.678 65.000 0.00 0.00 0.00 4.46
3235 3407 0.970937 TGAGATCCGTCACCAGGTCC 60.971 60.000 0.00 0.00 0.00 4.46
3236 3408 0.895530 TTGAGATCCGTCACCAGGTC 59.104 55.000 0.00 0.00 0.00 3.85
3237 3409 0.608640 GTTGAGATCCGTCACCAGGT 59.391 55.000 0.00 0.00 0.00 4.00
3238 3410 0.458543 CGTTGAGATCCGTCACCAGG 60.459 60.000 0.00 0.00 0.00 4.45
3239 3411 1.078759 GCGTTGAGATCCGTCACCAG 61.079 60.000 0.00 0.00 0.00 4.00
3240 3412 1.080093 GCGTTGAGATCCGTCACCA 60.080 57.895 0.00 0.00 0.00 4.17
3241 3413 1.810030 GGCGTTGAGATCCGTCACC 60.810 63.158 0.00 0.00 0.00 4.02
3242 3414 1.810030 GGGCGTTGAGATCCGTCAC 60.810 63.158 0.00 0.00 0.00 3.67
3243 3415 1.822114 TTGGGCGTTGAGATCCGTCA 61.822 55.000 0.00 0.00 0.00 4.35
3244 3416 1.079405 TTGGGCGTTGAGATCCGTC 60.079 57.895 0.00 0.00 0.00 4.79
3245 3417 1.375523 GTTGGGCGTTGAGATCCGT 60.376 57.895 0.00 0.00 0.00 4.69
3246 3418 1.361668 CTGTTGGGCGTTGAGATCCG 61.362 60.000 0.00 0.00 0.00 4.18
3247 3419 0.036388 TCTGTTGGGCGTTGAGATCC 60.036 55.000 0.00 0.00 0.00 3.36
3248 3420 1.363744 CTCTGTTGGGCGTTGAGATC 58.636 55.000 0.00 0.00 0.00 2.75
3249 3421 0.036010 CCTCTGTTGGGCGTTGAGAT 60.036 55.000 0.00 0.00 0.00 2.75
3250 3422 1.371183 CCTCTGTTGGGCGTTGAGA 59.629 57.895 0.00 0.00 0.00 3.27
3251 3423 1.071471 ACCTCTGTTGGGCGTTGAG 59.929 57.895 0.00 0.00 0.00 3.02
3252 3424 1.227823 CACCTCTGTTGGGCGTTGA 60.228 57.895 0.00 0.00 0.00 3.18
3253 3425 1.227823 TCACCTCTGTTGGGCGTTG 60.228 57.895 0.00 0.00 0.00 4.10
3254 3426 1.227853 GTCACCTCTGTTGGGCGTT 60.228 57.895 0.00 0.00 0.00 4.84
3255 3427 2.426023 GTCACCTCTGTTGGGCGT 59.574 61.111 0.00 0.00 0.00 5.68
3256 3428 2.738521 CGTCACCTCTGTTGGGCG 60.739 66.667 0.00 0.00 0.00 6.13
3257 3429 2.358737 CCGTCACCTCTGTTGGGC 60.359 66.667 0.00 0.00 0.00 5.36
3258 3430 2.347490 CCCGTCACCTCTGTTGGG 59.653 66.667 0.00 0.00 0.00 4.12
3259 3431 2.347490 CCCCGTCACCTCTGTTGG 59.653 66.667 0.00 0.00 0.00 3.77
3260 3432 1.541310 TAGCCCCGTCACCTCTGTTG 61.541 60.000 0.00 0.00 0.00 3.33
3261 3433 1.229082 TAGCCCCGTCACCTCTGTT 60.229 57.895 0.00 0.00 0.00 3.16
3262 3434 1.982938 GTAGCCCCGTCACCTCTGT 60.983 63.158 0.00 0.00 0.00 3.41
3263 3435 1.668101 GAGTAGCCCCGTCACCTCTG 61.668 65.000 0.00 0.00 0.00 3.35
3264 3436 1.380112 GAGTAGCCCCGTCACCTCT 60.380 63.158 0.00 0.00 0.00 3.69
3265 3437 2.772691 CGAGTAGCCCCGTCACCTC 61.773 68.421 0.00 0.00 0.00 3.85
3266 3438 2.754658 CGAGTAGCCCCGTCACCT 60.755 66.667 0.00 0.00 0.00 4.00
3267 3439 3.066814 ACGAGTAGCCCCGTCACC 61.067 66.667 0.00 0.00 33.23 4.02
3268 3440 2.181021 CACGAGTAGCCCCGTCAC 59.819 66.667 0.00 0.00 36.83 3.67
3269 3441 2.282674 ACACGAGTAGCCCCGTCA 60.283 61.111 0.00 0.00 36.83 4.35
3270 3442 2.181021 CACACGAGTAGCCCCGTC 59.819 66.667 0.00 0.00 36.83 4.79
3271 3443 3.379445 CCACACGAGTAGCCCCGT 61.379 66.667 0.00 0.00 39.88 5.28
3272 3444 3.379445 ACCACACGAGTAGCCCCG 61.379 66.667 0.00 0.00 0.00 5.73
3273 3445 1.614241 ATCACCACACGAGTAGCCCC 61.614 60.000 0.00 0.00 0.00 5.80
3274 3446 0.460284 CATCACCACACGAGTAGCCC 60.460 60.000 0.00 0.00 0.00 5.19
3275 3447 0.460284 CCATCACCACACGAGTAGCC 60.460 60.000 0.00 0.00 0.00 3.93
3276 3448 0.460284 CCCATCACCACACGAGTAGC 60.460 60.000 0.00 0.00 0.00 3.58
3277 3449 0.175760 CCCCATCACCACACGAGTAG 59.824 60.000 0.00 0.00 0.00 2.57
3278 3450 0.543410 ACCCCATCACCACACGAGTA 60.543 55.000 0.00 0.00 0.00 2.59
3279 3451 1.841556 ACCCCATCACCACACGAGT 60.842 57.895 0.00 0.00 0.00 4.18
3280 3452 1.375908 CACCCCATCACCACACGAG 60.376 63.158 0.00 0.00 0.00 4.18
3281 3453 2.747022 CACCCCATCACCACACGA 59.253 61.111 0.00 0.00 0.00 4.35
3282 3454 3.055719 GCACCCCATCACCACACG 61.056 66.667 0.00 0.00 0.00 4.49
3283 3455 1.675641 GAGCACCCCATCACCACAC 60.676 63.158 0.00 0.00 0.00 3.82
3284 3456 2.756400 GAGCACCCCATCACCACA 59.244 61.111 0.00 0.00 0.00 4.17
3285 3457 2.436646 CGAGCACCCCATCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
3286 3458 2.606213 TCGAGCACCCCATCACCA 60.606 61.111 0.00 0.00 0.00 4.17
3287 3459 2.125106 GTCGAGCACCCCATCACC 60.125 66.667 0.00 0.00 0.00 4.02
3288 3460 2.125106 GGTCGAGCACCCCATCAC 60.125 66.667 10.30 0.00 39.69 3.06
3296 3468 2.740055 CTGCACCAGGTCGAGCAC 60.740 66.667 18.15 1.21 32.87 4.40
3297 3469 4.007644 CCTGCACCAGGTCGAGCA 62.008 66.667 18.15 5.97 45.82 4.26
3305 3477 2.837883 GCACACACACCTGCACCAG 61.838 63.158 0.00 0.00 33.31 4.00
3306 3478 2.828095 GCACACACACCTGCACCA 60.828 61.111 0.00 0.00 33.31 4.17
3307 3479 2.133742 GATGCACACACACCTGCACC 62.134 60.000 0.00 0.00 45.91 5.01
3308 3480 1.283793 GATGCACACACACCTGCAC 59.716 57.895 0.00 0.00 45.91 4.57
3310 3482 1.580845 GAGGATGCACACACACCTGC 61.581 60.000 0.00 0.00 36.46 4.85
3311 3483 0.250424 TGAGGATGCACACACACCTG 60.250 55.000 0.00 0.00 36.46 4.00
3312 3484 0.694771 ATGAGGATGCACACACACCT 59.305 50.000 0.00 0.00 38.24 4.00
3313 3485 1.089920 GATGAGGATGCACACACACC 58.910 55.000 0.00 0.00 0.00 4.16
3314 3486 0.723414 CGATGAGGATGCACACACAC 59.277 55.000 0.00 0.00 0.00 3.82
3315 3487 0.607620 TCGATGAGGATGCACACACA 59.392 50.000 0.00 0.00 0.00 3.72
3316 3488 1.596260 CATCGATGAGGATGCACACAC 59.404 52.381 21.02 0.00 37.59 3.82
3317 3489 1.944032 CATCGATGAGGATGCACACA 58.056 50.000 21.02 0.00 37.59 3.72
3333 3505 2.165301 GCCCACGTACACGAGCATC 61.165 63.158 9.04 0.00 43.02 3.91
3334 3506 2.125673 GCCCACGTACACGAGCAT 60.126 61.111 9.04 0.00 43.02 3.79
3335 3507 3.299977 AGCCCACGTACACGAGCA 61.300 61.111 9.04 0.00 43.02 4.26
3336 3508 2.809601 CAGCCCACGTACACGAGC 60.810 66.667 9.04 8.22 43.02 5.03
3337 3509 2.809601 GCAGCCCACGTACACGAG 60.810 66.667 9.04 0.00 43.02 4.18
3338 3510 4.367023 GGCAGCCCACGTACACGA 62.367 66.667 9.04 0.00 43.02 4.35
3339 3511 3.950794 ATGGCAGCCCACGTACACG 62.951 63.158 9.64 0.00 45.77 4.49
3340 3512 2.046314 ATGGCAGCCCACGTACAC 60.046 61.111 9.64 0.00 45.77 2.90
3341 3513 2.046411 CATGGCAGCCCACGTACA 60.046 61.111 9.64 0.00 45.77 2.90
3342 3514 2.824041 CCATGGCAGCCCACGTAC 60.824 66.667 9.64 0.00 45.77 3.67
3343 3515 3.006133 TCCATGGCAGCCCACGTA 61.006 61.111 9.64 0.00 45.77 3.57
3344 3516 4.415150 CTCCATGGCAGCCCACGT 62.415 66.667 9.64 0.00 45.77 4.49
3346 3518 4.828296 CCCTCCATGGCAGCCCAC 62.828 72.222 9.64 0.00 45.77 4.61
3354 3526 2.190578 GGACGAAGCCCTCCATGG 59.809 66.667 4.97 4.97 0.00 3.66
3355 3527 0.322456 TTTGGACGAAGCCCTCCATG 60.322 55.000 0.00 0.00 36.42 3.66
3356 3528 0.035056 CTTTGGACGAAGCCCTCCAT 60.035 55.000 0.00 0.00 36.42 3.41
3357 3529 1.374947 CTTTGGACGAAGCCCTCCA 59.625 57.895 0.00 0.00 34.58 3.86
3358 3530 2.041115 GCTTTGGACGAAGCCCTCC 61.041 63.158 12.29 0.00 44.85 4.30
3359 3531 3.579685 GCTTTGGACGAAGCCCTC 58.420 61.111 12.29 0.00 44.85 4.30
3368 3540 2.293399 CCTGGTTGTACAAGCTTTGGAC 59.707 50.000 31.38 9.98 44.98 4.02
3369 3541 2.092103 ACCTGGTTGTACAAGCTTTGGA 60.092 45.455 31.36 17.74 39.38 3.53
3370 3542 2.293399 GACCTGGTTGTACAAGCTTTGG 59.707 50.000 31.38 28.90 39.38 3.28
3371 3543 3.214328 AGACCTGGTTGTACAAGCTTTG 58.786 45.455 31.38 22.72 39.38 2.77
3372 3544 3.577805 AGACCTGGTTGTACAAGCTTT 57.422 42.857 31.38 18.83 39.38 3.51
3373 3545 3.244457 GGTAGACCTGGTTGTACAAGCTT 60.244 47.826 31.38 19.14 39.38 3.74
3374 3546 2.302157 GGTAGACCTGGTTGTACAAGCT 59.698 50.000 31.38 16.61 39.38 3.74
3375 3547 2.038033 TGGTAGACCTGGTTGTACAAGC 59.962 50.000 26.90 26.90 39.12 4.01
3376 3548 3.576982 TCTGGTAGACCTGGTTGTACAAG 59.423 47.826 8.98 15.85 35.87 3.16
3377 3549 3.578978 TCTGGTAGACCTGGTTGTACAA 58.421 45.455 17.30 3.59 35.87 2.41
3378 3550 3.247948 TCTGGTAGACCTGGTTGTACA 57.752 47.619 17.30 0.00 35.87 2.90
3379 3551 3.118738 CCATCTGGTAGACCTGGTTGTAC 60.119 52.174 0.00 6.28 35.87 2.90
3380 3552 3.104512 CCATCTGGTAGACCTGGTTGTA 58.895 50.000 0.00 0.00 35.87 2.41
3381 3553 1.909302 CCATCTGGTAGACCTGGTTGT 59.091 52.381 0.00 0.00 35.87 3.32
3382 3554 1.210478 CCCATCTGGTAGACCTGGTTG 59.790 57.143 0.00 0.00 35.87 3.77
3383 3555 1.584724 CCCATCTGGTAGACCTGGTT 58.415 55.000 0.00 0.00 35.87 3.67
3384 3556 0.326618 CCCCATCTGGTAGACCTGGT 60.327 60.000 0.00 0.00 35.87 4.00
3385 3557 1.056700 CCCCCATCTGGTAGACCTGG 61.057 65.000 5.82 2.62 35.87 4.45
3386 3558 1.700042 GCCCCCATCTGGTAGACCTG 61.700 65.000 0.00 0.00 36.82 4.00
3387 3559 1.384643 GCCCCCATCTGGTAGACCT 60.385 63.158 0.00 0.00 36.82 3.85
3388 3560 2.452937 GGCCCCCATCTGGTAGACC 61.453 68.421 0.00 0.00 0.00 3.85
3389 3561 1.384643 AGGCCCCCATCTGGTAGAC 60.385 63.158 0.00 0.00 0.00 2.59
3390 3562 1.074471 GAGGCCCCCATCTGGTAGA 60.074 63.158 0.00 0.00 0.00 2.59
3391 3563 2.150051 GGAGGCCCCCATCTGGTAG 61.150 68.421 0.00 0.00 0.00 3.18
3392 3564 2.039831 GGAGGCCCCCATCTGGTA 60.040 66.667 0.00 0.00 0.00 3.25
3393 3565 2.284211 TATGGAGGCCCCCATCTGGT 62.284 60.000 24.09 0.95 43.07 4.00
3394 3566 1.464001 TATGGAGGCCCCCATCTGG 60.464 63.158 24.09 0.00 43.07 3.86
3395 3567 2.073232 CTATGGAGGCCCCCATCTG 58.927 63.158 24.09 13.17 43.07 2.90
3396 3568 1.849823 GCTATGGAGGCCCCCATCT 60.850 63.158 24.09 2.73 43.07 2.90
3397 3569 2.759795 GCTATGGAGGCCCCCATC 59.240 66.667 24.09 5.54 43.07 3.51
3399 3571 4.815973 ACGCTATGGAGGCCCCCA 62.816 66.667 9.14 9.14 41.05 4.96
3400 3572 4.256180 CACGCTATGGAGGCCCCC 62.256 72.222 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.