Multiple sequence alignment - TraesCS5D01G311700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G311700 chr5D 100.000 5586 0 0 1 5586 407970918 407965333 0.000000e+00 10316.0
1 TraesCS5D01G311700 chr5D 85.380 342 26 11 1 319 407973483 407973143 3.230000e-87 333.0
2 TraesCS5D01G311700 chr5D 100.000 35 0 0 2690 2724 407967905 407967871 1.300000e-06 65.8
3 TraesCS5D01G311700 chr5D 100.000 35 0 0 3014 3048 407968229 407968195 1.300000e-06 65.8
4 TraesCS5D01G311700 chr5B 91.402 3117 156 43 2513 5586 489284617 489281570 0.000000e+00 4169.0
5 TraesCS5D01G311700 chr5B 91.784 998 43 10 763 1754 489286101 489285137 0.000000e+00 1352.0
6 TraesCS5D01G311700 chr5B 88.168 262 20 5 770 1031 489303947 489303697 9.090000e-78 302.0
7 TraesCS5D01G311700 chr5B 92.593 189 13 1 2328 2516 489284847 489284660 2.560000e-68 270.0
8 TraesCS5D01G311700 chr5B 96.552 58 2 0 2626 2683 489284362 489284305 4.610000e-16 97.1
9 TraesCS5D01G311700 chr5A 92.896 2562 123 26 3054 5586 513846602 513844071 0.000000e+00 3668.0
10 TraesCS5D01G311700 chr5A 90.142 1339 87 15 763 2078 513848741 513847425 0.000000e+00 1700.0
11 TraesCS5D01G311700 chr5A 85.320 688 60 19 1 665 513852711 513852042 0.000000e+00 673.0
12 TraesCS5D01G311700 chr5A 81.699 306 26 14 2336 2632 513847417 513847133 1.570000e-55 228.0
13 TraesCS5D01G311700 chr5A 91.964 112 9 0 2718 2829 513847123 513847012 2.080000e-34 158.0
14 TraesCS5D01G311700 chr5A 94.186 86 5 0 653 738 513848887 513848802 1.260000e-26 132.0
15 TraesCS5D01G311700 chr5A 96.226 53 2 0 3003 3055 513846768 513846716 2.770000e-13 87.9
16 TraesCS5D01G311700 chr5A 90.769 65 5 1 2618 2682 513847075 513847012 9.970000e-13 86.1
17 TraesCS5D01G311700 chr4B 89.928 139 13 1 2078 2216 250725508 250725371 1.600000e-40 178.0
18 TraesCS5D01G311700 chr4D 96.078 102 4 0 2231 2332 36603110 36603211 3.460000e-37 167.0
19 TraesCS5D01G311700 chr7D 95.960 99 4 0 2231 2329 500775520 500775618 1.610000e-35 161.0
20 TraesCS5D01G311700 chr7D 95.960 99 4 0 2231 2329 525768031 525768129 1.610000e-35 161.0
21 TraesCS5D01G311700 chr7D 95.960 99 4 0 2231 2329 619400736 619400834 1.610000e-35 161.0
22 TraesCS5D01G311700 chr7D 85.211 142 20 1 2089 2230 635468815 635468675 1.620000e-30 145.0
23 TraesCS5D01G311700 chr4A 95.960 99 4 0 2231 2329 37306964 37306866 1.610000e-35 161.0
24 TraesCS5D01G311700 chr4A 95.960 99 4 0 2231 2329 137967042 137967140 1.610000e-35 161.0
25 TraesCS5D01G311700 chr3D 95.960 99 4 0 2231 2329 187836406 187836308 1.610000e-35 161.0
26 TraesCS5D01G311700 chr3D 95.960 99 4 0 2231 2329 567266321 567266223 1.610000e-35 161.0
27 TraesCS5D01G311700 chr3A 95.960 99 4 0 2231 2329 520435959 520436057 1.610000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G311700 chr5D 407965333 407970918 5585 True 3482.533333 10316 100.00000 1 5586 3 chr5D.!!$R2 5585
1 TraesCS5D01G311700 chr5B 489281570 489286101 4531 True 1472.025000 4169 93.08275 763 5586 4 chr5B.!!$R2 4823
2 TraesCS5D01G311700 chr5A 513844071 513852711 8640 True 841.625000 3668 90.40025 1 5586 8 chr5A.!!$R1 5585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 4158 0.036306 CCTACTTTCCACCGCACCTT 59.964 55.0 0.0 0.0 0.0 3.50 F
2103 5366 0.106419 AAAGACCTGGCCGAAAACCA 60.106 50.0 0.0 0.0 35.4 3.67 F
3553 7065 0.035458 CTCCAGTGAACCGCCTTTCT 59.965 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 5470 0.036010 CTCGAAAGCACCCCACATCT 60.036 55.0 0.00 0.0 0.00 2.90 R
3672 7184 0.612229 CTTCAGCCTCTCAGCCTCAA 59.388 55.0 0.00 0.0 0.00 3.02 R
5519 9080 0.247736 AGGACGTCAGCAGGATGAAC 59.752 55.0 18.91 0.0 39.69 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.657840 GGCTATTAGCGTGCAGTTGG 59.342 55.000 9.50 0.00 43.62 3.77
34 35 1.882989 GCAGTTGGAGCCGAGTCTCT 61.883 60.000 0.00 0.00 33.70 3.10
35 36 0.172352 CAGTTGGAGCCGAGTCTCTC 59.828 60.000 0.00 1.83 33.70 3.20
68 69 6.487299 ACAGTTATCTATCCACCTCCTTTC 57.513 41.667 0.00 0.00 0.00 2.62
81 82 2.290514 CCTCCTTTCCTCTTGTGCATCA 60.291 50.000 0.00 0.00 0.00 3.07
114 115 2.557924 AGGTTGTGTGCACATGTTATGG 59.442 45.455 24.69 0.00 41.52 2.74
129 130 7.447545 CACATGTTATGGAAGATCATGGAGATT 59.552 37.037 0.00 0.00 39.76 2.40
131 132 9.163899 CATGTTATGGAAGATCATGGAGATTAG 57.836 37.037 0.00 0.00 37.00 1.73
138 139 5.991933 AGATCATGGAGATTAGCACGTAT 57.008 39.130 0.00 0.00 37.00 3.06
171 172 2.188062 TTTGGGACGCGGAGTATTTT 57.812 45.000 12.47 0.00 0.00 1.82
177 178 1.395954 GACGCGGAGTATTTTGAACCC 59.604 52.381 12.47 0.00 0.00 4.11
181 182 2.675889 GCGGAGTATTTTGAACCCGAGA 60.676 50.000 0.00 0.00 39.31 4.04
203 204 2.240414 TCACATGCTCCCTGATGAACAT 59.760 45.455 0.00 0.00 0.00 2.71
204 205 3.455543 TCACATGCTCCCTGATGAACATA 59.544 43.478 0.00 0.00 0.00 2.29
205 206 4.103627 TCACATGCTCCCTGATGAACATAT 59.896 41.667 0.00 0.00 0.00 1.78
206 207 4.825634 CACATGCTCCCTGATGAACATATT 59.174 41.667 0.00 0.00 0.00 1.28
207 208 4.825634 ACATGCTCCCTGATGAACATATTG 59.174 41.667 0.00 0.00 0.00 1.90
208 209 4.508551 TGCTCCCTGATGAACATATTGT 57.491 40.909 0.00 0.00 0.00 2.71
209 210 5.628797 TGCTCCCTGATGAACATATTGTA 57.371 39.130 0.00 0.00 0.00 2.41
210 211 6.000246 TGCTCCCTGATGAACATATTGTAA 58.000 37.500 0.00 0.00 0.00 2.41
211 212 6.604171 TGCTCCCTGATGAACATATTGTAAT 58.396 36.000 0.00 0.00 0.00 1.89
212 213 6.487668 TGCTCCCTGATGAACATATTGTAATG 59.512 38.462 0.00 0.00 0.00 1.90
213 214 6.488006 GCTCCCTGATGAACATATTGTAATGT 59.512 38.462 0.00 0.00 41.87 2.71
237 260 3.777106 TTAGGGAGCATATGAGCTTGG 57.223 47.619 6.97 0.00 46.75 3.61
242 265 2.344950 GAGCATATGAGCTTGGGATCG 58.655 52.381 6.97 0.00 46.75 3.69
441 465 7.758528 CCACTCAATTTTCATCTTTTCCATCTC 59.241 37.037 0.00 0.00 0.00 2.75
452 476 5.454062 TCTTTTCCATCTCCAGGTTTTGAA 58.546 37.500 0.00 0.00 0.00 2.69
453 477 6.077322 TCTTTTCCATCTCCAGGTTTTGAAT 58.923 36.000 0.00 0.00 0.00 2.57
465 489 5.949354 CCAGGTTTTGAATAGGTGGTATCAA 59.051 40.000 0.00 0.00 0.00 2.57
478 502 7.448748 AGGTGGTATCAAACTTTACATTGTC 57.551 36.000 0.00 0.00 0.00 3.18
479 503 7.001674 AGGTGGTATCAAACTTTACATTGTCA 58.998 34.615 0.00 0.00 0.00 3.58
480 504 7.504238 AGGTGGTATCAAACTTTACATTGTCAA 59.496 33.333 0.00 0.00 0.00 3.18
481 505 8.138712 GGTGGTATCAAACTTTACATTGTCAAA 58.861 33.333 0.00 0.00 0.00 2.69
482 506 9.522804 GTGGTATCAAACTTTACATTGTCAAAA 57.477 29.630 0.00 0.00 0.00 2.44
507 531 8.419076 AAAGGTGTGTCAAACATTTAATTGTC 57.581 30.769 3.97 0.00 41.97 3.18
512 536 8.113675 GTGTGTCAAACATTTAATTGTCCAAAC 58.886 33.333 3.60 1.90 41.97 2.93
531 555 6.038825 TCCAAACTTTTAGAACGAAGATGCAA 59.961 34.615 0.00 0.00 0.00 4.08
553 577 8.301002 TGCAAGAAACACCCAACTTTATTATAC 58.699 33.333 0.00 0.00 0.00 1.47
554 578 8.520351 GCAAGAAACACCCAACTTTATTATACT 58.480 33.333 0.00 0.00 0.00 2.12
556 580 8.803397 AGAAACACCCAACTTTATTATACTCC 57.197 34.615 0.00 0.00 0.00 3.85
557 581 7.551617 AGAAACACCCAACTTTATTATACTCCG 59.448 37.037 0.00 0.00 0.00 4.63
558 582 6.303903 ACACCCAACTTTATTATACTCCGT 57.696 37.500 0.00 0.00 0.00 4.69
559 583 7.422465 ACACCCAACTTTATTATACTCCGTA 57.578 36.000 0.00 0.00 0.00 4.02
560 584 8.026396 ACACCCAACTTTATTATACTCCGTAT 57.974 34.615 0.00 0.00 33.05 3.06
585 609 8.956533 TTATAAAGCACATAGTAGCATGAACA 57.043 30.769 0.00 0.00 0.00 3.18
589 613 5.248640 AGCACATAGTAGCATGAACAAAGT 58.751 37.500 0.00 0.00 0.00 2.66
595 619 8.604035 ACATAGTAGCATGAACAAAGTATTTCG 58.396 33.333 0.00 0.00 35.03 3.46
647 671 9.424659 CAAAGTTCAAACAACAAATAAAGCATC 57.575 29.630 0.00 0.00 0.00 3.91
651 675 9.986833 GTTCAAACAACAAATAAAGCATCTTTT 57.013 25.926 0.00 0.00 0.00 2.27
738 3937 6.851222 TGCTATTTGAATTTCCTCGATCTC 57.149 37.500 0.00 0.00 0.00 2.75
792 4018 3.655481 CACCGGTGCTTTCTGGAC 58.345 61.111 24.02 0.00 37.31 4.02
793 4019 1.227823 CACCGGTGCTTTCTGGACA 60.228 57.895 24.02 0.00 38.87 4.02
887 4113 1.525535 AGGATAGACCCGACGACCG 60.526 63.158 0.00 0.00 40.05 4.79
928 4154 1.290955 CGTCCTACTTTCCACCGCA 59.709 57.895 0.00 0.00 0.00 5.69
929 4155 1.012486 CGTCCTACTTTCCACCGCAC 61.012 60.000 0.00 0.00 0.00 5.34
930 4156 0.672711 GTCCTACTTTCCACCGCACC 60.673 60.000 0.00 0.00 0.00 5.01
931 4157 0.834687 TCCTACTTTCCACCGCACCT 60.835 55.000 0.00 0.00 0.00 4.00
932 4158 0.036306 CCTACTTTCCACCGCACCTT 59.964 55.000 0.00 0.00 0.00 3.50
933 4159 1.156736 CTACTTTCCACCGCACCTTG 58.843 55.000 0.00 0.00 0.00 3.61
934 4160 0.250553 TACTTTCCACCGCACCTTGG 60.251 55.000 0.00 0.00 0.00 3.61
935 4161 2.909965 TTTCCACCGCACCTTGGC 60.910 61.111 0.00 0.00 32.37 4.52
936 4162 4.966787 TTCCACCGCACCTTGGCC 62.967 66.667 0.00 0.00 32.37 5.36
967 4204 1.407437 GCCATCAAACCTCCGTCATCT 60.407 52.381 0.00 0.00 0.00 2.90
1305 4551 2.363975 GCCCGGGATGTACCACTCA 61.364 63.158 29.31 0.00 41.20 3.41
1412 4658 1.004560 CGGAGCTGCTCACCAAGAA 60.005 57.895 28.95 0.00 31.08 2.52
1568 4814 4.330944 TCGCCGTCAAGGTATTATCATT 57.669 40.909 0.00 0.00 43.70 2.57
1570 4816 6.032956 TCGCCGTCAAGGTATTATCATTAT 57.967 37.500 0.00 0.00 43.70 1.28
1572 4818 7.604549 TCGCCGTCAAGGTATTATCATTATTA 58.395 34.615 0.00 0.00 43.70 0.98
1573 4819 8.255206 TCGCCGTCAAGGTATTATCATTATTAT 58.745 33.333 0.00 0.00 43.70 1.28
1574 4820 8.879759 CGCCGTCAAGGTATTATCATTATTATT 58.120 33.333 0.00 0.00 43.70 1.40
1618 4864 6.017275 GCTACTCATTTCTCATCAAATCAGGG 60.017 42.308 0.00 0.00 0.00 4.45
1623 4869 5.627499 TTTCTCATCAAATCAGGGAAACG 57.373 39.130 0.00 0.00 0.00 3.60
1625 4871 4.905429 TCTCATCAAATCAGGGAAACGAA 58.095 39.130 0.00 0.00 0.00 3.85
1643 4889 3.439129 ACGAATCGAAACAAAATCCCCTC 59.561 43.478 10.55 0.00 0.00 4.30
1711 4957 1.267038 CGTTTCGATGTGAATGCGAGG 60.267 52.381 0.00 0.00 37.45 4.63
1712 4958 0.726827 TTTCGATGTGAATGCGAGGC 59.273 50.000 0.00 0.00 36.22 4.70
1754 5005 6.070951 AGAGGAAAGGTTGAATCATGATCA 57.929 37.500 9.06 0.00 0.00 2.92
1755 5006 6.670617 AGAGGAAAGGTTGAATCATGATCAT 58.329 36.000 9.06 1.18 0.00 2.45
1762 5014 8.812513 AAGGTTGAATCATGATCATCTTTGTA 57.187 30.769 9.06 0.00 0.00 2.41
1814 5067 4.511617 TGCAAGATTAACCATTTCGCAA 57.488 36.364 0.00 0.00 0.00 4.85
1816 5069 4.233789 GCAAGATTAACCATTTCGCAACA 58.766 39.130 0.00 0.00 0.00 3.33
1821 5074 6.512297 AGATTAACCATTTCGCAACAAACTT 58.488 32.000 0.00 0.00 0.00 2.66
1826 5079 4.202111 ACCATTTCGCAACAAACTTTAGCT 60.202 37.500 0.00 0.00 0.00 3.32
1831 5084 4.987832 TCGCAACAAACTTTAGCTGAAAA 58.012 34.783 0.00 0.00 0.00 2.29
1832 5085 5.034152 TCGCAACAAACTTTAGCTGAAAAG 58.966 37.500 7.32 7.32 41.35 2.27
1897 5152 4.279169 GGGTATTCCATCACCATCACAATG 59.721 45.833 0.00 0.00 36.48 2.82
1908 5164 1.064505 CATCACAATGCGGCCACTAAG 59.935 52.381 2.24 0.00 0.00 2.18
1968 5224 0.896940 CTTGGCATGGGCTTGACACT 60.897 55.000 0.00 0.00 40.87 3.55
1995 5258 2.613977 CCACCTCGCTTTTCAGATCACT 60.614 50.000 0.00 0.00 0.00 3.41
1996 5259 2.670414 CACCTCGCTTTTCAGATCACTC 59.330 50.000 0.00 0.00 0.00 3.51
1997 5260 2.564947 ACCTCGCTTTTCAGATCACTCT 59.435 45.455 0.00 0.00 0.00 3.24
1998 5261 3.186119 CCTCGCTTTTCAGATCACTCTC 58.814 50.000 0.00 0.00 0.00 3.20
1999 5262 3.119173 CCTCGCTTTTCAGATCACTCTCT 60.119 47.826 0.00 0.00 0.00 3.10
2000 5263 4.097135 CCTCGCTTTTCAGATCACTCTCTA 59.903 45.833 0.00 0.00 0.00 2.43
2001 5264 5.242069 TCGCTTTTCAGATCACTCTCTAG 57.758 43.478 0.00 0.00 0.00 2.43
2002 5265 4.702612 TCGCTTTTCAGATCACTCTCTAGT 59.297 41.667 0.00 0.00 35.91 2.57
2029 5292 3.123804 ACTGTCAGTCGTGTTGATGAAC 58.876 45.455 0.00 0.00 0.00 3.18
2070 5333 7.823745 AGAAATGATGAGGTTGTACTTTGTT 57.176 32.000 0.00 0.00 0.00 2.83
2078 5341 9.095065 GATGAGGTTGTACTTTGTTACGATATT 57.905 33.333 0.00 0.00 0.00 1.28
2092 5355 9.529325 TTGTTACGATATTATGAGAAAGACCTG 57.471 33.333 0.00 0.00 0.00 4.00
2093 5356 8.141909 TGTTACGATATTATGAGAAAGACCTGG 58.858 37.037 0.00 0.00 0.00 4.45
2094 5357 5.542779 ACGATATTATGAGAAAGACCTGGC 58.457 41.667 0.00 0.00 0.00 4.85
2095 5358 4.932200 CGATATTATGAGAAAGACCTGGCC 59.068 45.833 0.00 0.00 0.00 5.36
2096 5359 2.691409 TTATGAGAAAGACCTGGCCG 57.309 50.000 0.00 0.00 0.00 6.13
2097 5360 1.860641 TATGAGAAAGACCTGGCCGA 58.139 50.000 0.00 0.00 0.00 5.54
2098 5361 0.984230 ATGAGAAAGACCTGGCCGAA 59.016 50.000 0.00 0.00 0.00 4.30
2099 5362 0.762418 TGAGAAAGACCTGGCCGAAA 59.238 50.000 0.00 0.00 0.00 3.46
2100 5363 1.142060 TGAGAAAGACCTGGCCGAAAA 59.858 47.619 0.00 0.00 0.00 2.29
2101 5364 1.535896 GAGAAAGACCTGGCCGAAAAC 59.464 52.381 0.00 0.00 0.00 2.43
2102 5365 0.596577 GAAAGACCTGGCCGAAAACC 59.403 55.000 0.00 0.00 0.00 3.27
2103 5366 0.106419 AAAGACCTGGCCGAAAACCA 60.106 50.000 0.00 0.00 35.40 3.67
2104 5367 0.112412 AAGACCTGGCCGAAAACCAT 59.888 50.000 0.00 0.00 36.36 3.55
2105 5368 0.988832 AGACCTGGCCGAAAACCATA 59.011 50.000 0.00 0.00 36.36 2.74
2106 5369 1.092348 GACCTGGCCGAAAACCATAC 58.908 55.000 0.00 0.00 36.36 2.39
2107 5370 0.402504 ACCTGGCCGAAAACCATACA 59.597 50.000 0.00 0.00 36.36 2.29
2108 5371 1.094785 CCTGGCCGAAAACCATACAG 58.905 55.000 0.00 0.00 36.36 2.74
2109 5372 1.094785 CTGGCCGAAAACCATACAGG 58.905 55.000 0.00 0.00 45.67 4.00
2119 5382 3.403936 CCATACAGGTAGCAAGGGC 57.596 57.895 0.00 0.00 41.61 5.19
2120 5383 0.546122 CCATACAGGTAGCAAGGGCA 59.454 55.000 0.00 0.00 44.61 5.36
2121 5384 1.064758 CCATACAGGTAGCAAGGGCAA 60.065 52.381 0.00 0.00 44.61 4.52
2122 5385 2.620367 CCATACAGGTAGCAAGGGCAAA 60.620 50.000 0.00 0.00 44.61 3.68
2123 5386 2.961531 TACAGGTAGCAAGGGCAAAA 57.038 45.000 0.00 0.00 44.61 2.44
2124 5387 1.620822 ACAGGTAGCAAGGGCAAAAG 58.379 50.000 0.00 0.00 44.61 2.27
2125 5388 1.144913 ACAGGTAGCAAGGGCAAAAGA 59.855 47.619 0.00 0.00 44.61 2.52
2126 5389 2.238521 CAGGTAGCAAGGGCAAAAGAA 58.761 47.619 0.00 0.00 44.61 2.52
2127 5390 2.229784 CAGGTAGCAAGGGCAAAAGAAG 59.770 50.000 0.00 0.00 44.61 2.85
2128 5391 2.108250 AGGTAGCAAGGGCAAAAGAAGA 59.892 45.455 0.00 0.00 44.61 2.87
2129 5392 3.092301 GGTAGCAAGGGCAAAAGAAGAT 58.908 45.455 0.00 0.00 44.61 2.40
2130 5393 3.119352 GGTAGCAAGGGCAAAAGAAGATG 60.119 47.826 0.00 0.00 44.61 2.90
2131 5394 2.880443 AGCAAGGGCAAAAGAAGATGA 58.120 42.857 0.00 0.00 44.61 2.92
2132 5395 2.824341 AGCAAGGGCAAAAGAAGATGAG 59.176 45.455 0.00 0.00 44.61 2.90
2133 5396 2.821969 GCAAGGGCAAAAGAAGATGAGA 59.178 45.455 0.00 0.00 40.72 3.27
2134 5397 3.256631 GCAAGGGCAAAAGAAGATGAGAA 59.743 43.478 0.00 0.00 40.72 2.87
2135 5398 4.262164 GCAAGGGCAAAAGAAGATGAGAAA 60.262 41.667 0.00 0.00 40.72 2.52
2136 5399 5.739935 GCAAGGGCAAAAGAAGATGAGAAAA 60.740 40.000 0.00 0.00 40.72 2.29
2137 5400 6.282930 CAAGGGCAAAAGAAGATGAGAAAAA 58.717 36.000 0.00 0.00 0.00 1.94
2158 5421 1.150536 TGGACACCCAAGACAAGGC 59.849 57.895 0.00 0.00 40.09 4.35
2159 5422 1.150536 GGACACCCAAGACAAGGCA 59.849 57.895 0.00 0.00 0.00 4.75
2160 5423 0.251341 GGACACCCAAGACAAGGCAT 60.251 55.000 0.00 0.00 0.00 4.40
2161 5424 1.004277 GGACACCCAAGACAAGGCATA 59.996 52.381 0.00 0.00 0.00 3.14
2162 5425 2.554344 GGACACCCAAGACAAGGCATAA 60.554 50.000 0.00 0.00 0.00 1.90
2163 5426 2.488153 GACACCCAAGACAAGGCATAAC 59.512 50.000 0.00 0.00 0.00 1.89
2164 5427 1.818674 CACCCAAGACAAGGCATAACC 59.181 52.381 0.00 0.00 39.61 2.85
2176 5439 3.033368 GGCATAACCTAGCTAGCAGAC 57.967 52.381 18.83 1.02 34.51 3.51
2177 5440 2.630580 GGCATAACCTAGCTAGCAGACT 59.369 50.000 18.83 0.00 34.51 3.24
2178 5441 3.553922 GGCATAACCTAGCTAGCAGACTG 60.554 52.174 18.83 9.21 34.51 3.51
2179 5442 3.319405 GCATAACCTAGCTAGCAGACTGA 59.681 47.826 18.83 0.00 0.00 3.41
2180 5443 4.202161 GCATAACCTAGCTAGCAGACTGAA 60.202 45.833 18.83 0.00 0.00 3.02
2181 5444 5.682471 GCATAACCTAGCTAGCAGACTGAAA 60.682 44.000 18.83 0.00 0.00 2.69
2182 5445 4.464069 AACCTAGCTAGCAGACTGAAAG 57.536 45.455 18.83 3.38 42.29 2.62
2183 5446 3.702792 ACCTAGCTAGCAGACTGAAAGA 58.297 45.455 18.83 0.00 37.43 2.52
2184 5447 3.445805 ACCTAGCTAGCAGACTGAAAGAC 59.554 47.826 18.83 0.00 37.43 3.01
2185 5448 3.181480 CCTAGCTAGCAGACTGAAAGACC 60.181 52.174 18.83 0.00 37.43 3.85
2186 5449 2.251818 AGCTAGCAGACTGAAAGACCA 58.748 47.619 18.83 0.00 37.43 4.02
2187 5450 2.836981 AGCTAGCAGACTGAAAGACCAT 59.163 45.455 18.83 0.00 37.43 3.55
2188 5451 3.118811 AGCTAGCAGACTGAAAGACCATC 60.119 47.826 18.83 0.00 37.43 3.51
2189 5452 3.368843 GCTAGCAGACTGAAAGACCATCA 60.369 47.826 10.63 0.00 37.43 3.07
2190 5453 3.051081 AGCAGACTGAAAGACCATCAC 57.949 47.619 6.65 0.00 37.43 3.06
2191 5454 2.079925 GCAGACTGAAAGACCATCACC 58.920 52.381 6.65 0.00 37.43 4.02
2192 5455 2.550855 GCAGACTGAAAGACCATCACCA 60.551 50.000 6.65 0.00 37.43 4.17
2193 5456 3.871463 GCAGACTGAAAGACCATCACCAT 60.871 47.826 6.65 0.00 37.43 3.55
2194 5457 3.688185 CAGACTGAAAGACCATCACCATG 59.312 47.826 0.00 0.00 37.43 3.66
2195 5458 3.584406 AGACTGAAAGACCATCACCATGA 59.416 43.478 0.00 0.00 37.43 3.07
2196 5459 3.937706 GACTGAAAGACCATCACCATGAG 59.062 47.826 0.00 0.00 37.43 2.90
2197 5460 3.584406 ACTGAAAGACCATCACCATGAGA 59.416 43.478 0.00 0.00 37.43 3.27
2198 5461 4.190001 CTGAAAGACCATCACCATGAGAG 58.810 47.826 0.00 0.00 34.07 3.20
2199 5462 3.840078 TGAAAGACCATCACCATGAGAGA 59.160 43.478 0.00 0.00 30.57 3.10
2200 5463 3.902881 AAGACCATCACCATGAGAGAC 57.097 47.619 0.00 0.00 30.57 3.36
2201 5464 2.825223 AGACCATCACCATGAGAGACA 58.175 47.619 0.00 0.00 30.57 3.41
2202 5465 2.765135 AGACCATCACCATGAGAGACAG 59.235 50.000 0.00 0.00 30.57 3.51
2203 5466 2.762887 GACCATCACCATGAGAGACAGA 59.237 50.000 0.00 0.00 30.57 3.41
2204 5467 3.176411 ACCATCACCATGAGAGACAGAA 58.824 45.455 0.00 0.00 30.57 3.02
2205 5468 3.197333 ACCATCACCATGAGAGACAGAAG 59.803 47.826 0.00 0.00 30.57 2.85
2206 5469 3.197333 CCATCACCATGAGAGACAGAAGT 59.803 47.826 0.00 0.00 30.57 3.01
2207 5470 4.403752 CCATCACCATGAGAGACAGAAGTA 59.596 45.833 0.00 0.00 30.57 2.24
2208 5471 5.451659 CCATCACCATGAGAGACAGAAGTAG 60.452 48.000 0.00 0.00 30.57 2.57
2209 5472 4.923415 TCACCATGAGAGACAGAAGTAGA 58.077 43.478 0.00 0.00 0.00 2.59
2210 5473 5.514169 TCACCATGAGAGACAGAAGTAGAT 58.486 41.667 0.00 0.00 0.00 1.98
2211 5474 5.359292 TCACCATGAGAGACAGAAGTAGATG 59.641 44.000 0.00 0.00 0.00 2.90
2212 5475 5.126869 CACCATGAGAGACAGAAGTAGATGT 59.873 44.000 0.00 0.00 0.00 3.06
2213 5476 5.126869 ACCATGAGAGACAGAAGTAGATGTG 59.873 44.000 0.00 0.00 0.00 3.21
2214 5477 5.451659 CCATGAGAGACAGAAGTAGATGTGG 60.452 48.000 0.00 0.00 0.00 4.17
2215 5478 4.019858 TGAGAGACAGAAGTAGATGTGGG 58.980 47.826 0.00 0.00 0.00 4.61
2216 5479 3.370104 AGAGACAGAAGTAGATGTGGGG 58.630 50.000 0.00 0.00 0.00 4.96
2217 5480 3.100671 GAGACAGAAGTAGATGTGGGGT 58.899 50.000 0.00 0.00 0.00 4.95
2218 5481 2.834549 AGACAGAAGTAGATGTGGGGTG 59.165 50.000 0.00 0.00 0.00 4.61
2219 5482 1.279271 ACAGAAGTAGATGTGGGGTGC 59.721 52.381 0.00 0.00 0.00 5.01
2220 5483 1.556911 CAGAAGTAGATGTGGGGTGCT 59.443 52.381 0.00 0.00 0.00 4.40
2221 5484 2.026822 CAGAAGTAGATGTGGGGTGCTT 60.027 50.000 0.00 0.00 0.00 3.91
2222 5485 2.644798 AGAAGTAGATGTGGGGTGCTTT 59.355 45.455 0.00 0.00 0.00 3.51
2223 5486 2.789409 AGTAGATGTGGGGTGCTTTC 57.211 50.000 0.00 0.00 0.00 2.62
2224 5487 1.066143 AGTAGATGTGGGGTGCTTTCG 60.066 52.381 0.00 0.00 0.00 3.46
2225 5488 1.066430 GTAGATGTGGGGTGCTTTCGA 60.066 52.381 0.00 0.00 0.00 3.71
2226 5489 0.036010 AGATGTGGGGTGCTTTCGAG 60.036 55.000 0.00 0.00 0.00 4.04
2227 5490 1.002134 ATGTGGGGTGCTTTCGAGG 60.002 57.895 0.00 0.00 0.00 4.63
2228 5491 2.359975 GTGGGGTGCTTTCGAGGG 60.360 66.667 0.00 0.00 0.00 4.30
2229 5492 2.528127 TGGGGTGCTTTCGAGGGA 60.528 61.111 0.00 0.00 0.00 4.20
2230 5493 2.150719 TGGGGTGCTTTCGAGGGAA 61.151 57.895 0.00 0.00 0.00 3.97
2231 5494 1.303282 GGGGTGCTTTCGAGGGAAT 59.697 57.895 0.00 0.00 30.88 3.01
2232 5495 0.544697 GGGGTGCTTTCGAGGGAATA 59.455 55.000 0.00 0.00 30.88 1.75
2233 5496 1.143073 GGGGTGCTTTCGAGGGAATAT 59.857 52.381 0.00 0.00 30.88 1.28
2234 5497 2.370849 GGGGTGCTTTCGAGGGAATATA 59.629 50.000 0.00 0.00 30.88 0.86
2235 5498 3.400255 GGGTGCTTTCGAGGGAATATAC 58.600 50.000 0.00 0.00 30.88 1.47
2236 5499 3.181458 GGGTGCTTTCGAGGGAATATACA 60.181 47.826 0.00 0.00 30.88 2.29
2237 5500 3.808174 GGTGCTTTCGAGGGAATATACAC 59.192 47.826 0.00 0.00 30.88 2.90
2238 5501 3.489785 GTGCTTTCGAGGGAATATACACG 59.510 47.826 0.00 0.00 30.88 4.49
2239 5502 3.131577 TGCTTTCGAGGGAATATACACGT 59.868 43.478 0.00 0.00 30.88 4.49
2240 5503 4.338964 TGCTTTCGAGGGAATATACACGTA 59.661 41.667 0.00 0.00 30.88 3.57
2241 5504 4.678742 GCTTTCGAGGGAATATACACGTAC 59.321 45.833 0.00 0.00 30.88 3.67
2242 5505 5.506982 GCTTTCGAGGGAATATACACGTACT 60.507 44.000 0.00 0.00 30.88 2.73
2243 5506 6.455360 TTTCGAGGGAATATACACGTACTT 57.545 37.500 0.00 0.00 30.88 2.24
2244 5507 6.455360 TTCGAGGGAATATACACGTACTTT 57.545 37.500 0.00 0.00 0.00 2.66
2245 5508 7.566760 TTCGAGGGAATATACACGTACTTTA 57.433 36.000 0.00 0.00 0.00 1.85
2246 5509 7.194607 TCGAGGGAATATACACGTACTTTAG 57.805 40.000 0.00 0.00 0.00 1.85
2247 5510 6.992123 TCGAGGGAATATACACGTACTTTAGA 59.008 38.462 0.00 0.00 0.00 2.10
2248 5511 7.172190 TCGAGGGAATATACACGTACTTTAGAG 59.828 40.741 0.00 0.00 0.00 2.43
2249 5512 7.041508 CGAGGGAATATACACGTACTTTAGAGT 60.042 40.741 0.00 0.00 39.97 3.24
2250 5513 7.938715 AGGGAATATACACGTACTTTAGAGTG 58.061 38.462 0.00 0.00 36.60 3.51
2258 5521 7.444629 ACACGTACTTTAGAGTGTAGATTCA 57.555 36.000 0.00 0.00 44.79 2.57
2259 5522 7.303998 ACACGTACTTTAGAGTGTAGATTCAC 58.696 38.462 0.00 0.00 44.79 3.18
2270 5533 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2271 5534 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2272 5535 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2273 5536 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2274 5537 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2275 5538 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2276 5539 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2277 5540 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2278 5541 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2279 5542 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2280 5543 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2281 5544 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2282 5545 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2283 5546 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
2284 5547 1.466856 TTGCTCCGTATGTAGTCCGT 58.533 50.000 0.00 0.00 0.00 4.69
2285 5548 2.330440 TGCTCCGTATGTAGTCCGTA 57.670 50.000 0.00 0.00 0.00 4.02
2286 5549 2.854963 TGCTCCGTATGTAGTCCGTAT 58.145 47.619 0.00 0.00 0.00 3.06
2287 5550 3.216800 TGCTCCGTATGTAGTCCGTATT 58.783 45.455 0.00 0.00 0.00 1.89
2288 5551 3.004002 TGCTCCGTATGTAGTCCGTATTG 59.996 47.826 0.00 0.00 0.00 1.90
2289 5552 3.611057 GCTCCGTATGTAGTCCGTATTGG 60.611 52.174 0.00 0.00 40.09 3.16
2305 5568 7.848128 TCCGTATTGGAATCTCTAAAAAGACT 58.152 34.615 0.00 0.00 46.38 3.24
2306 5569 8.319146 TCCGTATTGGAATCTCTAAAAAGACTT 58.681 33.333 0.00 0.00 46.38 3.01
2307 5570 8.391106 CCGTATTGGAATCTCTAAAAAGACTTG 58.609 37.037 0.00 0.00 42.00 3.16
2308 5571 8.936864 CGTATTGGAATCTCTAAAAAGACTTGT 58.063 33.333 0.00 0.00 0.00 3.16
2320 5583 9.211485 TCTAAAAAGACTTGTATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
2321 5584 9.211485 CTAAAAAGACTTGTATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
2322 5585 7.668525 AAAAGACTTGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
2323 5586 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2324 5587 4.161754 AGACTTGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2325 5588 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2326 5589 4.161754 ACTTGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2327 5590 3.716431 TGTATTTAGGAACGGAGGGAGT 58.284 45.455 0.00 0.00 0.00 3.85
2333 5596 1.142097 GAACGGAGGGAGTAGCTGC 59.858 63.158 0.00 0.00 0.00 5.25
2334 5597 2.299503 GAACGGAGGGAGTAGCTGCC 62.300 65.000 0.00 0.00 42.52 4.85
2367 5630 2.667969 CACAACTCTCGCAATCAATCGA 59.332 45.455 0.00 0.00 0.00 3.59
2374 5637 0.298707 CGCAATCAATCGACTGGACG 59.701 55.000 0.00 0.00 0.00 4.79
2377 5640 2.606108 CAATCAATCGACTGGACGACA 58.394 47.619 0.00 0.00 44.84 4.35
2399 5662 0.884704 ACTGGCACTGGCTGTTTACG 60.885 55.000 9.06 0.00 36.99 3.18
2403 5666 1.874872 GGCACTGGCTGTTTACGTAAA 59.125 47.619 16.59 16.59 40.87 2.01
2404 5667 2.291190 GGCACTGGCTGTTTACGTAAAA 59.709 45.455 21.67 11.43 40.87 1.52
2428 5700 3.431415 AGTAAAAGTCAGGATTTGGGGC 58.569 45.455 0.00 0.00 0.00 5.80
2544 5862 5.757320 ACTGAGATGGATGATTCATTCGAAC 59.243 40.000 0.00 0.00 32.81 3.95
2545 5863 4.746611 TGAGATGGATGATTCATTCGAACG 59.253 41.667 0.00 0.00 32.81 3.95
2546 5864 4.697514 AGATGGATGATTCATTCGAACGT 58.302 39.130 0.00 0.00 32.81 3.99
2547 5865 5.842907 AGATGGATGATTCATTCGAACGTA 58.157 37.500 0.00 0.00 32.81 3.57
2548 5866 6.459066 AGATGGATGATTCATTCGAACGTAT 58.541 36.000 0.00 0.00 32.81 3.06
2549 5867 6.931281 AGATGGATGATTCATTCGAACGTATT 59.069 34.615 0.00 0.00 32.81 1.89
2550 5868 6.525121 TGGATGATTCATTCGAACGTATTC 57.475 37.500 0.00 0.00 32.81 1.75
2551 5869 6.045955 TGGATGATTCATTCGAACGTATTCA 58.954 36.000 0.00 0.97 34.14 2.57
2567 5885 7.387119 ACGTATTCAGTATTCACTACTCACA 57.613 36.000 0.00 0.00 38.68 3.58
2675 5994 4.659529 AGGCCTTTAGTAGCTTTCCTTT 57.340 40.909 0.00 0.00 0.00 3.11
2696 6015 0.531657 CTTTTGCCCGCAATGGATGA 59.468 50.000 2.42 0.00 42.00 2.92
2702 6021 1.543208 GCCCGCAATGGATGACAGATA 60.543 52.381 0.00 0.00 42.00 1.98
2781 6100 2.225467 CCCTTTAGCTAGCTCAATGGC 58.775 52.381 23.26 0.00 0.00 4.40
2804 6123 9.899661 TGGCACATACTGTTAAATAAGTAAGAT 57.100 29.630 0.00 0.00 32.84 2.40
2834 6182 5.675684 AGCTTTCCTTTCCTTTTGAACAA 57.324 34.783 0.00 0.00 31.05 2.83
3058 6568 6.932356 AAGGCTGTCAGTTCAACATATATG 57.068 37.500 11.29 11.29 0.00 1.78
3063 6573 7.360691 GGCTGTCAGTTCAACATATATGCTATG 60.361 40.741 12.79 9.53 0.00 2.23
3067 6577 9.212641 GTCAGTTCAACATATATGCTATGACAT 57.787 33.333 12.79 0.00 33.97 3.06
3270 6780 4.866508 TCGTCTGGACACTGAAGTAAAT 57.133 40.909 1.63 0.00 0.00 1.40
3387 6898 9.720769 TTGTAGATCCCCTTATTTATTCGATTC 57.279 33.333 0.00 0.00 0.00 2.52
3472 6984 2.504585 AGATGGTGATGTGCAGTCAGAT 59.495 45.455 2.11 0.00 0.00 2.90
3553 7065 0.035458 CTCCAGTGAACCGCCTTTCT 59.965 55.000 0.00 0.00 0.00 2.52
3672 7184 0.611896 GGGGTGCATAAGCTTGGTGT 60.612 55.000 9.86 0.00 42.74 4.16
3886 7398 0.747255 TCTCGACTGCCTATGCCTTC 59.253 55.000 0.00 0.00 36.33 3.46
3900 7412 0.318762 GCCTTCGTTGGACAGAGACT 59.681 55.000 0.91 0.00 0.00 3.24
3910 7422 4.060038 TGGACAGAGACTGTGTTTTCTC 57.940 45.455 6.71 0.00 45.44 2.87
3940 7452 3.244422 ACCATGTCGACTTCTTAAAGCCA 60.244 43.478 17.92 0.00 35.81 4.75
3948 7460 6.527372 GTCGACTTCTTAAAGCCAGTAAGTAG 59.473 42.308 8.70 0.00 35.81 2.57
3958 7470 4.443913 GCCAGTAAGTAGCTAGGCTATC 57.556 50.000 11.22 0.00 43.30 2.08
3970 7483 2.134789 AGGCTATCTTTTGGGTGCAG 57.865 50.000 0.00 0.00 0.00 4.41
3973 7486 2.562738 GGCTATCTTTTGGGTGCAGTTT 59.437 45.455 0.00 0.00 0.00 2.66
3989 7502 6.293955 GGTGCAGTTTTGAGTAATTAAGCTCA 60.294 38.462 2.48 2.48 39.66 4.26
3999 7512 9.770097 TTGAGTAATTAAGCTCATATCTTCAGG 57.230 33.333 6.62 0.00 40.83 3.86
4042 7557 8.265055 TCTATTTAAGAAGTACTGTTCCATGGG 58.735 37.037 13.02 0.00 0.00 4.00
4063 7578 3.621715 GGTGCTTCTTGGTAATTACCTCG 59.378 47.826 30.09 21.54 46.58 4.63
4069 7584 6.255237 GCTTCTTGGTAATTACCTCGAGTTAC 59.745 42.308 30.09 12.60 46.58 2.50
4113 7637 2.292267 GGATCATGGTAGCAGTTGTGG 58.708 52.381 0.00 0.00 0.00 4.17
4156 7681 5.461032 AATTGCTTTTCCCGTAATGTGAA 57.539 34.783 0.00 0.00 0.00 3.18
4276 7801 2.878526 GCCCCTGGTAAATGTCGAAGTT 60.879 50.000 0.00 0.00 0.00 2.66
4297 7822 0.613260 TCGCTCATGTAACAAGGCCT 59.387 50.000 0.00 0.00 0.00 5.19
4361 7886 5.323371 AGAAACTGTTTTAACTGCAGCAA 57.677 34.783 15.27 5.33 33.87 3.91
4373 7898 4.657436 ACTGCAGCAACTATACCTCTAC 57.343 45.455 15.27 0.00 0.00 2.59
4376 7901 4.537751 TGCAGCAACTATACCTCTACTCT 58.462 43.478 0.00 0.00 0.00 3.24
4386 7911 8.522542 ACTATACCTCTACTCTTTTGTACCTG 57.477 38.462 0.00 0.00 0.00 4.00
4501 8031 0.693049 ACGCCCTGAAGAATGGAGTT 59.307 50.000 0.00 0.00 0.00 3.01
4553 8083 3.057456 AGAAGAGGCACGCCGTATATTAG 60.057 47.826 1.61 0.00 41.95 1.73
4597 8127 1.956170 CGATTGATCCTTCGGCGGG 60.956 63.158 7.21 0.32 0.00 6.13
4676 8206 6.332635 TGGGAGATGTACCCTATGATTTGAAT 59.667 38.462 0.00 0.00 46.82 2.57
4677 8207 6.656693 GGGAGATGTACCCTATGATTTGAATG 59.343 42.308 0.00 0.00 43.65 2.67
4678 8208 7.453393 GGAGATGTACCCTATGATTTGAATGA 58.547 38.462 0.00 0.00 0.00 2.57
4679 8209 7.939039 GGAGATGTACCCTATGATTTGAATGAA 59.061 37.037 0.00 0.00 0.00 2.57
4697 8227 4.476628 TGAACATCAGCAGCAGATAAGA 57.523 40.909 0.00 0.00 0.00 2.10
4840 8371 1.357137 TGTGAGGGCACTGTCCATTA 58.643 50.000 0.00 0.00 45.36 1.90
4921 8468 0.252881 AGGTCAGAGGGGAATGCAGA 60.253 55.000 0.00 0.00 0.00 4.26
4992 8539 2.832129 CTGAAAGGTGGTAGCTGGAGTA 59.168 50.000 0.00 0.00 0.00 2.59
5002 8555 6.127253 GGTGGTAGCTGGAGTAAGTAAATGTA 60.127 42.308 0.00 0.00 0.00 2.29
5051 8604 6.875726 TCATGTGATGGTTCTTTTAGACTGAG 59.124 38.462 0.00 0.00 0.00 3.35
5095 8648 4.749598 ACGGTCAATTTGCCAAAAGATTTC 59.250 37.500 0.00 0.00 0.00 2.17
5123 8680 8.409371 TCTACTACTGCTAGTGATTGATTCTTG 58.591 37.037 0.00 0.00 34.79 3.02
5202 8759 1.381928 GGTGCTGGTGGATGATGCTG 61.382 60.000 0.00 0.00 0.00 4.41
5219 8776 1.196354 GCTGTAGCATGCGGAATCATC 59.804 52.381 13.01 0.96 41.59 2.92
5220 8777 2.486918 CTGTAGCATGCGGAATCATCA 58.513 47.619 13.01 3.45 0.00 3.07
5221 8778 3.072211 CTGTAGCATGCGGAATCATCAT 58.928 45.455 13.01 0.00 0.00 2.45
5222 8779 3.069289 TGTAGCATGCGGAATCATCATC 58.931 45.455 13.01 0.00 0.00 2.92
5223 8780 2.265589 AGCATGCGGAATCATCATCA 57.734 45.000 13.01 0.00 0.00 3.07
5224 8781 2.791655 AGCATGCGGAATCATCATCAT 58.208 42.857 13.01 0.00 0.00 2.45
5235 8792 7.593825 CGGAATCATCATCATGTACTACTACA 58.406 38.462 0.00 0.00 37.28 2.74
5236 8793 8.246871 CGGAATCATCATCATGTACTACTACAT 58.753 37.037 0.00 0.00 43.30 2.29
5267 8825 5.236047 GGCTTTGATCTACACTTATCTGCTG 59.764 44.000 0.00 0.00 0.00 4.41
5282 8840 8.656849 ACTTATCTGCTGAAGTTACAAAATACG 58.343 33.333 0.00 0.00 31.83 3.06
5283 8841 5.856126 TCTGCTGAAGTTACAAAATACGG 57.144 39.130 0.00 0.00 0.00 4.02
5284 8842 5.543714 TCTGCTGAAGTTACAAAATACGGA 58.456 37.500 0.00 0.00 0.00 4.69
5285 8843 5.992829 TCTGCTGAAGTTACAAAATACGGAA 59.007 36.000 0.00 0.00 0.00 4.30
5290 8848 7.903431 GCTGAAGTTACAAAATACGGAATACTG 59.097 37.037 0.00 0.00 0.00 2.74
5293 8851 8.625786 AAGTTACAAAATACGGAATACTGGTT 57.374 30.769 0.00 0.00 0.00 3.67
5299 8857 9.052759 ACAAAATACGGAATACTGGTTATGATC 57.947 33.333 0.00 0.00 0.00 2.92
5311 8869 5.193728 ACTGGTTATGATCATAGGTTGGGTT 59.806 40.000 14.86 0.00 0.00 4.11
5313 8871 5.070685 GGTTATGATCATAGGTTGGGTTCC 58.929 45.833 14.86 5.34 0.00 3.62
5314 8872 5.163088 GGTTATGATCATAGGTTGGGTTCCT 60.163 44.000 14.86 0.00 38.91 3.36
5315 8873 3.931907 TGATCATAGGTTGGGTTCCTG 57.068 47.619 0.00 0.00 36.60 3.86
5316 8874 2.092429 TGATCATAGGTTGGGTTCCTGC 60.092 50.000 0.00 0.00 36.60 4.85
5317 8875 1.367346 TCATAGGTTGGGTTCCTGCA 58.633 50.000 0.00 0.00 36.60 4.41
5318 8876 1.922447 TCATAGGTTGGGTTCCTGCAT 59.078 47.619 0.00 0.00 36.60 3.96
5320 8878 2.214376 TAGGTTGGGTTCCTGCATTG 57.786 50.000 0.00 0.00 36.60 2.82
5370 8930 4.259356 CAGATTCCAAGCTGAGACATTCA 58.741 43.478 0.00 0.00 44.83 2.57
5417 8978 0.391395 ACGATGACGACGAGGTCTCT 60.391 55.000 0.00 0.85 42.66 3.10
5454 9015 3.352222 GCGCTGCTGCACTGAACT 61.352 61.111 16.29 0.00 39.64 3.01
5465 9026 1.884235 CACTGAACTGTGGAGGAACC 58.116 55.000 4.35 0.00 39.54 3.62
5502 9063 4.704833 GCGAGGTGCTGAAGCCCA 62.705 66.667 11.02 0.00 41.73 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.047274 GGCTCCAACTGCACGCTA 60.047 61.111 0.00 0.00 0.00 4.26
16 17 0.172352 GAGAGACTCGGCTCCAACTG 59.828 60.000 0.00 0.00 35.49 3.16
34 35 7.491372 GTGGATAGATAACTGTTTCATCAACGA 59.509 37.037 0.00 0.00 38.36 3.85
35 36 7.254455 GGTGGATAGATAACTGTTTCATCAACG 60.254 40.741 0.00 0.00 38.36 4.10
68 69 2.815503 TCACACAATGATGCACAAGAGG 59.184 45.455 0.00 0.00 29.99 3.69
81 82 4.340666 TGCACACAACCTTAATCACACAAT 59.659 37.500 0.00 0.00 0.00 2.71
114 115 4.626042 ACGTGCTAATCTCCATGATCTTC 58.374 43.478 0.00 0.00 33.57 2.87
138 139 6.973474 CCGCGTCCCAAATATTGTTATTAAAA 59.027 34.615 4.92 0.00 0.00 1.52
160 161 1.664151 CTCGGGTTCAAAATACTCCGC 59.336 52.381 0.00 0.00 37.65 5.54
171 172 0.904649 AGCATGTGATCTCGGGTTCA 59.095 50.000 0.00 0.00 0.00 3.18
177 178 0.749049 TCAGGGAGCATGTGATCTCG 59.251 55.000 0.00 0.00 35.78 4.04
181 182 2.240414 TGTTCATCAGGGAGCATGTGAT 59.760 45.455 0.00 0.00 0.00 3.06
204 205 9.017509 CATATGCTCCCTAATGAACATTACAAT 57.982 33.333 3.52 0.00 32.50 2.71
205 206 8.217111 TCATATGCTCCCTAATGAACATTACAA 58.783 33.333 0.00 0.00 32.50 2.41
206 207 7.744733 TCATATGCTCCCTAATGAACATTACA 58.255 34.615 0.00 1.56 32.50 2.41
207 208 7.148340 GCTCATATGCTCCCTAATGAACATTAC 60.148 40.741 0.00 0.00 32.50 1.89
208 209 6.881065 GCTCATATGCTCCCTAATGAACATTA 59.119 38.462 0.00 6.99 32.50 1.90
209 210 5.709164 GCTCATATGCTCCCTAATGAACATT 59.291 40.000 0.00 5.40 34.93 2.71
210 211 5.013913 AGCTCATATGCTCCCTAATGAACAT 59.986 40.000 0.00 0.00 39.34 2.71
211 212 4.349048 AGCTCATATGCTCCCTAATGAACA 59.651 41.667 0.00 0.00 39.34 3.18
212 213 4.904241 AGCTCATATGCTCCCTAATGAAC 58.096 43.478 0.00 0.00 39.34 3.18
213 214 5.311265 CAAGCTCATATGCTCCCTAATGAA 58.689 41.667 0.00 0.00 43.24 2.57
214 215 4.263199 CCAAGCTCATATGCTCCCTAATGA 60.263 45.833 0.00 0.00 43.24 2.57
215 216 4.008330 CCAAGCTCATATGCTCCCTAATG 58.992 47.826 0.00 0.00 43.24 1.90
217 218 2.373169 CCCAAGCTCATATGCTCCCTAA 59.627 50.000 0.00 0.00 43.24 2.69
218 219 1.980765 CCCAAGCTCATATGCTCCCTA 59.019 52.381 0.00 0.00 43.24 3.53
219 220 0.769873 CCCAAGCTCATATGCTCCCT 59.230 55.000 0.00 0.00 43.24 4.20
220 221 0.767375 TCCCAAGCTCATATGCTCCC 59.233 55.000 0.00 0.00 43.24 4.30
221 222 2.709213 GATCCCAAGCTCATATGCTCC 58.291 52.381 0.00 0.00 43.24 4.70
228 251 2.744494 GCTCTTTCGATCCCAAGCTCAT 60.744 50.000 0.00 0.00 0.00 2.90
299 323 9.469097 TGAAGGCCTAAAAATAGTTTTATGCTA 57.531 29.630 24.63 12.85 44.13 3.49
316 340 8.535335 CATATTAGAAGCTAATCTGAAGGCCTA 58.465 37.037 5.16 0.00 0.00 3.93
318 342 7.390027 TCATATTAGAAGCTAATCTGAAGGCC 58.610 38.462 10.81 0.00 0.00 5.19
405 429 6.817765 TGAAAATTGAGTGGACCTGTATTC 57.182 37.500 0.00 0.00 0.00 1.75
406 430 7.177878 AGATGAAAATTGAGTGGACCTGTATT 58.822 34.615 0.00 0.00 0.00 1.89
412 436 6.159293 GGAAAAGATGAAAATTGAGTGGACC 58.841 40.000 0.00 0.00 0.00 4.46
413 437 6.748132 TGGAAAAGATGAAAATTGAGTGGAC 58.252 36.000 0.00 0.00 0.00 4.02
415 439 7.609056 AGATGGAAAAGATGAAAATTGAGTGG 58.391 34.615 0.00 0.00 0.00 4.00
417 441 7.452501 TGGAGATGGAAAAGATGAAAATTGAGT 59.547 33.333 0.00 0.00 0.00 3.41
441 465 5.505780 TGATACCACCTATTCAAAACCTGG 58.494 41.667 0.00 0.00 0.00 4.45
452 476 9.174166 GACAATGTAAAGTTTGATACCACCTAT 57.826 33.333 0.00 0.00 0.00 2.57
453 477 8.158132 TGACAATGTAAAGTTTGATACCACCTA 58.842 33.333 0.00 0.00 0.00 3.08
480 504 9.225436 ACAATTAAATGTTTGACACACCTTTTT 57.775 25.926 1.19 0.00 38.61 1.94
481 505 8.785329 ACAATTAAATGTTTGACACACCTTTT 57.215 26.923 1.19 0.00 38.61 2.27
482 506 7.494298 GGACAATTAAATGTTTGACACACCTTT 59.506 33.333 0.00 1.50 38.61 3.11
486 510 7.763172 TTGGACAATTAAATGTTTGACACAC 57.237 32.000 0.00 0.00 38.61 3.82
507 531 5.757886 TGCATCTTCGTTCTAAAAGTTTGG 58.242 37.500 0.00 0.00 0.00 3.28
512 536 7.112148 GTGTTTCTTGCATCTTCGTTCTAAAAG 59.888 37.037 0.00 0.00 0.00 2.27
531 555 7.551617 CGGAGTATAATAAAGTTGGGTGTTTCT 59.448 37.037 0.00 0.00 0.00 2.52
553 577 8.027189 TGCTACTATGTGCTTTATAATACGGAG 58.973 37.037 0.00 0.00 0.00 4.63
554 578 7.888424 TGCTACTATGTGCTTTATAATACGGA 58.112 34.615 0.00 0.00 0.00 4.69
555 579 8.595533 CATGCTACTATGTGCTTTATAATACGG 58.404 37.037 0.00 0.00 0.00 4.02
556 580 9.353999 TCATGCTACTATGTGCTTTATAATACG 57.646 33.333 0.00 0.00 0.00 3.06
559 583 9.559732 TGTTCATGCTACTATGTGCTTTATAAT 57.440 29.630 0.00 0.00 0.00 1.28
560 584 8.956533 TGTTCATGCTACTATGTGCTTTATAA 57.043 30.769 0.00 0.00 0.00 0.98
572 596 8.942338 ATCGAAATACTTTGTTCATGCTACTA 57.058 30.769 0.00 0.00 0.00 1.82
573 597 7.849804 ATCGAAATACTTTGTTCATGCTACT 57.150 32.000 0.00 0.00 0.00 2.57
574 598 8.600625 TGTATCGAAATACTTTGTTCATGCTAC 58.399 33.333 0.00 0.00 38.87 3.58
614 638 4.814147 TGTTGTTTGAACTTTGTGCATCA 58.186 34.783 0.00 0.00 0.00 3.07
618 642 7.216130 GCTTTATTTGTTGTTTGAACTTTGTGC 59.784 33.333 0.00 0.00 0.00 4.57
621 645 9.424659 GATGCTTTATTTGTTGTTTGAACTTTG 57.575 29.630 0.00 0.00 0.00 2.77
622 646 9.382275 AGATGCTTTATTTGTTGTTTGAACTTT 57.618 25.926 0.00 0.00 0.00 2.66
624 648 8.947055 AAGATGCTTTATTTGTTGTTTGAACT 57.053 26.923 0.00 0.00 0.00 3.01
625 649 9.986833 AAAAGATGCTTTATTTGTTGTTTGAAC 57.013 25.926 0.00 0.00 0.00 3.18
738 3937 4.400567 GTGAAATGGGAATTCTCTCTTGGG 59.599 45.833 6.92 0.00 0.00 4.12
750 3949 1.430853 TCATGGTGGGTGAAATGGGAA 59.569 47.619 0.00 0.00 0.00 3.97
753 3952 2.234414 CCTTTCATGGTGGGTGAAATGG 59.766 50.000 2.22 3.35 42.68 3.16
754 3953 2.354003 GCCTTTCATGGTGGGTGAAATG 60.354 50.000 2.22 1.70 42.68 2.32
936 4162 4.720902 TGATGGCCAGTGGGTGCG 62.721 66.667 13.05 0.00 36.17 5.34
937 4163 1.907807 TTTGATGGCCAGTGGGTGC 60.908 57.895 13.05 0.00 36.17 5.01
938 4164 1.535204 GGTTTGATGGCCAGTGGGTG 61.535 60.000 13.05 0.00 36.17 4.61
946 4183 0.394352 ATGACGGAGGTTTGATGGCC 60.394 55.000 0.00 0.00 0.00 5.36
967 4204 4.424711 GCTCCGGCCATGTGGGAA 62.425 66.667 2.24 0.00 40.01 3.97
1109 4346 4.554363 ACGCGGCTCTCGATTCGG 62.554 66.667 12.47 0.00 42.43 4.30
1618 4864 4.619760 GGGGATTTTGTTTCGATTCGTTTC 59.380 41.667 5.89 0.00 0.00 2.78
1623 4869 3.687698 TCGAGGGGATTTTGTTTCGATTC 59.312 43.478 0.00 0.00 32.80 2.52
1625 4871 3.343941 TCGAGGGGATTTTGTTTCGAT 57.656 42.857 0.00 0.00 32.80 3.59
1643 4889 6.668541 AACAGGACATATTCTGAAACATCG 57.331 37.500 0.00 0.00 35.20 3.84
1711 4957 7.836842 TCCTCTAAAAGGGATTTACATTTTGC 58.163 34.615 0.00 0.00 46.23 3.68
1744 4995 8.963725 TGCTTTCTTACAAAGATGATCATGATT 58.036 29.630 14.30 4.90 37.38 2.57
1814 5067 6.524101 TGTTCCTTTTCAGCTAAAGTTTGT 57.476 33.333 7.93 0.00 34.11 2.83
1816 5069 6.811665 GTGTTGTTCCTTTTCAGCTAAAGTTT 59.188 34.615 7.93 0.00 34.11 2.66
1821 5074 3.634910 GGGTGTTGTTCCTTTTCAGCTAA 59.365 43.478 0.00 0.00 0.00 3.09
1826 5079 2.808919 TGTGGGTGTTGTTCCTTTTCA 58.191 42.857 0.00 0.00 0.00 2.69
1831 5084 1.039856 GCAATGTGGGTGTTGTTCCT 58.960 50.000 0.00 0.00 0.00 3.36
1832 5085 0.749649 TGCAATGTGGGTGTTGTTCC 59.250 50.000 0.00 0.00 0.00 3.62
1917 5173 0.242017 ACAGCTGGAAAATGCTTCGC 59.758 50.000 19.93 0.00 37.44 4.70
1932 5188 3.305403 GCCAAGGAGAAGGTAAAAACAGC 60.305 47.826 0.00 0.00 0.00 4.40
1968 5224 0.534203 GAAAAGCGAGGTGGTGGACA 60.534 55.000 0.00 0.00 0.00 4.02
1995 5258 4.320023 GACTGACAGTCTGACACTAGAGA 58.680 47.826 25.33 0.00 41.88 3.10
1996 5259 3.124466 CGACTGACAGTCTGACACTAGAG 59.876 52.174 28.34 9.18 42.92 2.43
1997 5260 3.067833 CGACTGACAGTCTGACACTAGA 58.932 50.000 28.34 0.00 42.92 2.43
1998 5261 2.809119 ACGACTGACAGTCTGACACTAG 59.191 50.000 28.34 15.28 42.92 2.57
1999 5262 2.548480 CACGACTGACAGTCTGACACTA 59.452 50.000 28.34 0.00 42.92 2.74
2000 5263 1.335182 CACGACTGACAGTCTGACACT 59.665 52.381 28.34 7.86 42.92 3.55
2001 5264 1.065701 ACACGACTGACAGTCTGACAC 59.934 52.381 28.34 6.82 42.92 3.67
2002 5265 1.389555 ACACGACTGACAGTCTGACA 58.610 50.000 28.34 5.79 42.92 3.58
2003 5266 2.120232 CAACACGACTGACAGTCTGAC 58.880 52.381 28.34 7.84 42.92 3.51
2005 5268 2.492019 TCAACACGACTGACAGTCTG 57.508 50.000 28.34 25.14 42.92 3.51
2006 5269 2.623416 TCATCAACACGACTGACAGTCT 59.377 45.455 28.34 15.52 42.92 3.24
2008 5271 3.123804 GTTCATCAACACGACTGACAGT 58.876 45.455 8.12 8.12 32.14 3.55
2009 5272 2.476619 GGTTCATCAACACGACTGACAG 59.523 50.000 0.00 0.00 33.70 3.51
2010 5273 2.159028 TGGTTCATCAACACGACTGACA 60.159 45.455 0.00 0.00 33.70 3.58
2011 5274 2.479837 TGGTTCATCAACACGACTGAC 58.520 47.619 0.00 0.00 33.70 3.51
2012 5275 2.900716 TGGTTCATCAACACGACTGA 57.099 45.000 0.00 0.00 33.70 3.41
2024 5287 4.028993 ACACGACCCTAAAATGGTTCAT 57.971 40.909 0.00 0.00 35.85 2.57
2029 5292 5.878116 TCATTTCTACACGACCCTAAAATGG 59.122 40.000 0.00 0.00 34.81 3.16
2042 5305 7.907214 AAGTACAACCTCATCATTTCTACAC 57.093 36.000 0.00 0.00 0.00 2.90
2070 5333 6.295123 GGCCAGGTCTTTCTCATAATATCGTA 60.295 42.308 0.00 0.00 0.00 3.43
2078 5341 1.860641 TCGGCCAGGTCTTTCTCATA 58.139 50.000 2.24 0.00 0.00 2.15
2079 5342 0.984230 TTCGGCCAGGTCTTTCTCAT 59.016 50.000 2.24 0.00 0.00 2.90
2080 5343 0.762418 TTTCGGCCAGGTCTTTCTCA 59.238 50.000 2.24 0.00 0.00 3.27
2081 5344 1.535896 GTTTTCGGCCAGGTCTTTCTC 59.464 52.381 2.24 0.00 0.00 2.87
2082 5345 1.605753 GTTTTCGGCCAGGTCTTTCT 58.394 50.000 2.24 0.00 0.00 2.52
2083 5346 0.596577 GGTTTTCGGCCAGGTCTTTC 59.403 55.000 2.24 0.00 0.00 2.62
2084 5347 0.106419 TGGTTTTCGGCCAGGTCTTT 60.106 50.000 2.24 0.00 0.00 2.52
2085 5348 0.112412 ATGGTTTTCGGCCAGGTCTT 59.888 50.000 2.24 0.00 39.65 3.01
2086 5349 0.988832 TATGGTTTTCGGCCAGGTCT 59.011 50.000 2.24 0.00 39.65 3.85
2087 5350 1.092348 GTATGGTTTTCGGCCAGGTC 58.908 55.000 2.24 0.00 39.65 3.85
2088 5351 0.402504 TGTATGGTTTTCGGCCAGGT 59.597 50.000 2.24 0.00 39.65 4.00
2089 5352 1.094785 CTGTATGGTTTTCGGCCAGG 58.905 55.000 2.24 0.00 39.65 4.45
2090 5353 1.094785 CCTGTATGGTTTTCGGCCAG 58.905 55.000 2.24 0.00 39.65 4.85
2091 5354 3.257935 CCTGTATGGTTTTCGGCCA 57.742 52.632 2.24 0.00 40.68 5.36
2097 5360 6.590184 TGCCCTTGCTACCTGTATGGTTTT 62.590 45.833 0.00 0.00 42.10 2.43
2098 5361 5.162503 TGCCCTTGCTACCTGTATGGTTT 62.163 47.826 0.00 0.00 42.10 3.27
2099 5362 3.695605 TGCCCTTGCTACCTGTATGGTT 61.696 50.000 0.00 0.00 42.10 3.67
2100 5363 2.183839 TGCCCTTGCTACCTGTATGGT 61.184 52.381 0.00 0.00 43.53 3.55
2101 5364 0.546122 TGCCCTTGCTACCTGTATGG 59.454 55.000 0.00 0.00 39.22 2.74
2102 5365 2.418368 TTGCCCTTGCTACCTGTATG 57.582 50.000 0.00 0.00 38.71 2.39
2103 5366 3.010138 TCTTTTGCCCTTGCTACCTGTAT 59.990 43.478 0.00 0.00 38.71 2.29
2104 5367 2.373836 TCTTTTGCCCTTGCTACCTGTA 59.626 45.455 0.00 0.00 38.71 2.74
2105 5368 1.144913 TCTTTTGCCCTTGCTACCTGT 59.855 47.619 0.00 0.00 38.71 4.00
2106 5369 1.909700 TCTTTTGCCCTTGCTACCTG 58.090 50.000 0.00 0.00 38.71 4.00
2107 5370 2.108250 TCTTCTTTTGCCCTTGCTACCT 59.892 45.455 0.00 0.00 38.71 3.08
2108 5371 2.514803 TCTTCTTTTGCCCTTGCTACC 58.485 47.619 0.00 0.00 38.71 3.18
2109 5372 3.758554 TCATCTTCTTTTGCCCTTGCTAC 59.241 43.478 0.00 0.00 38.71 3.58
2110 5373 4.012374 CTCATCTTCTTTTGCCCTTGCTA 58.988 43.478 0.00 0.00 38.71 3.49
2111 5374 2.824341 CTCATCTTCTTTTGCCCTTGCT 59.176 45.455 0.00 0.00 38.71 3.91
2112 5375 2.821969 TCTCATCTTCTTTTGCCCTTGC 59.178 45.455 0.00 0.00 38.26 4.01
2113 5376 5.458041 TTTCTCATCTTCTTTTGCCCTTG 57.542 39.130 0.00 0.00 0.00 3.61
2114 5377 6.484364 TTTTTCTCATCTTCTTTTGCCCTT 57.516 33.333 0.00 0.00 0.00 3.95
2135 5398 3.387699 CCTTGTCTTGGGTGTCCATTTTT 59.612 43.478 0.00 0.00 43.63 1.94
2136 5399 2.965147 CCTTGTCTTGGGTGTCCATTTT 59.035 45.455 0.00 0.00 43.63 1.82
2137 5400 2.597455 CCTTGTCTTGGGTGTCCATTT 58.403 47.619 0.00 0.00 43.63 2.32
2138 5401 1.823250 GCCTTGTCTTGGGTGTCCATT 60.823 52.381 0.00 0.00 43.63 3.16
2139 5402 0.251341 GCCTTGTCTTGGGTGTCCAT 60.251 55.000 0.00 0.00 43.63 3.41
2140 5403 1.150536 GCCTTGTCTTGGGTGTCCA 59.849 57.895 0.00 0.00 42.25 4.02
2141 5404 0.251341 ATGCCTTGTCTTGGGTGTCC 60.251 55.000 0.00 0.00 0.00 4.02
2142 5405 2.488153 GTTATGCCTTGTCTTGGGTGTC 59.512 50.000 0.00 0.00 0.00 3.67
2143 5406 2.514803 GTTATGCCTTGTCTTGGGTGT 58.485 47.619 0.00 0.00 0.00 4.16
2144 5407 1.818674 GGTTATGCCTTGTCTTGGGTG 59.181 52.381 0.00 0.00 0.00 4.61
2145 5408 2.215942 GGTTATGCCTTGTCTTGGGT 57.784 50.000 0.00 0.00 0.00 4.51
2156 5419 2.630580 AGTCTGCTAGCTAGGTTATGCC 59.369 50.000 22.10 4.24 37.58 4.40
2157 5420 3.319405 TCAGTCTGCTAGCTAGGTTATGC 59.681 47.826 22.10 8.11 0.00 3.14
2158 5421 5.521906 TTCAGTCTGCTAGCTAGGTTATG 57.478 43.478 22.10 5.95 0.00 1.90
2159 5422 5.894393 TCTTTCAGTCTGCTAGCTAGGTTAT 59.106 40.000 22.10 0.00 0.00 1.89
2160 5423 5.125739 GTCTTTCAGTCTGCTAGCTAGGTTA 59.874 44.000 22.10 0.00 0.00 2.85
2161 5424 4.081917 GTCTTTCAGTCTGCTAGCTAGGTT 60.082 45.833 22.10 1.69 0.00 3.50
2162 5425 3.445805 GTCTTTCAGTCTGCTAGCTAGGT 59.554 47.826 22.10 0.00 0.00 3.08
2163 5426 3.181480 GGTCTTTCAGTCTGCTAGCTAGG 60.181 52.174 22.10 6.77 0.00 3.02
2164 5427 3.445450 TGGTCTTTCAGTCTGCTAGCTAG 59.555 47.826 16.84 16.84 0.00 3.42
2165 5428 3.431415 TGGTCTTTCAGTCTGCTAGCTA 58.569 45.455 17.23 0.72 0.00 3.32
2166 5429 2.251818 TGGTCTTTCAGTCTGCTAGCT 58.748 47.619 17.23 0.00 0.00 3.32
2167 5430 2.751166 TGGTCTTTCAGTCTGCTAGC 57.249 50.000 8.10 8.10 0.00 3.42
2168 5431 4.180057 GTGATGGTCTTTCAGTCTGCTAG 58.820 47.826 0.00 0.00 0.00 3.42
2169 5432 3.055819 GGTGATGGTCTTTCAGTCTGCTA 60.056 47.826 0.00 0.00 0.00 3.49
2170 5433 2.289945 GGTGATGGTCTTTCAGTCTGCT 60.290 50.000 0.00 0.00 0.00 4.24
2171 5434 2.079925 GGTGATGGTCTTTCAGTCTGC 58.920 52.381 0.00 0.00 0.00 4.26
2172 5435 3.407424 TGGTGATGGTCTTTCAGTCTG 57.593 47.619 0.00 0.00 0.00 3.51
2173 5436 3.584406 TCATGGTGATGGTCTTTCAGTCT 59.416 43.478 0.00 0.00 0.00 3.24
2174 5437 3.937706 CTCATGGTGATGGTCTTTCAGTC 59.062 47.826 0.00 0.00 0.00 3.51
2175 5438 3.584406 TCTCATGGTGATGGTCTTTCAGT 59.416 43.478 0.00 0.00 0.00 3.41
2176 5439 4.081254 TCTCTCATGGTGATGGTCTTTCAG 60.081 45.833 0.00 0.00 0.00 3.02
2177 5440 3.840078 TCTCTCATGGTGATGGTCTTTCA 59.160 43.478 0.00 0.00 0.00 2.69
2178 5441 4.187694 GTCTCTCATGGTGATGGTCTTTC 58.812 47.826 0.00 0.00 0.00 2.62
2179 5442 3.584406 TGTCTCTCATGGTGATGGTCTTT 59.416 43.478 0.00 0.00 0.00 2.52
2180 5443 3.176411 TGTCTCTCATGGTGATGGTCTT 58.824 45.455 0.00 0.00 0.00 3.01
2181 5444 2.765135 CTGTCTCTCATGGTGATGGTCT 59.235 50.000 0.00 0.00 0.00 3.85
2182 5445 2.762887 TCTGTCTCTCATGGTGATGGTC 59.237 50.000 0.00 0.00 0.00 4.02
2183 5446 2.825223 TCTGTCTCTCATGGTGATGGT 58.175 47.619 0.00 0.00 0.00 3.55
2184 5447 3.197333 ACTTCTGTCTCTCATGGTGATGG 59.803 47.826 0.00 0.00 0.00 3.51
2185 5448 4.468765 ACTTCTGTCTCTCATGGTGATG 57.531 45.455 0.00 0.00 0.00 3.07
2186 5449 5.514169 TCTACTTCTGTCTCTCATGGTGAT 58.486 41.667 0.00 0.00 0.00 3.06
2187 5450 4.923415 TCTACTTCTGTCTCTCATGGTGA 58.077 43.478 0.00 0.00 0.00 4.02
2188 5451 5.126869 ACATCTACTTCTGTCTCTCATGGTG 59.873 44.000 0.00 0.00 0.00 4.17
2189 5452 5.126869 CACATCTACTTCTGTCTCTCATGGT 59.873 44.000 0.00 0.00 0.00 3.55
2190 5453 5.451659 CCACATCTACTTCTGTCTCTCATGG 60.452 48.000 0.00 0.00 0.00 3.66
2191 5454 5.451659 CCCACATCTACTTCTGTCTCTCATG 60.452 48.000 0.00 0.00 0.00 3.07
2192 5455 4.648762 CCCACATCTACTTCTGTCTCTCAT 59.351 45.833 0.00 0.00 0.00 2.90
2193 5456 4.019858 CCCACATCTACTTCTGTCTCTCA 58.980 47.826 0.00 0.00 0.00 3.27
2194 5457 3.383185 CCCCACATCTACTTCTGTCTCTC 59.617 52.174 0.00 0.00 0.00 3.20
2195 5458 3.245803 ACCCCACATCTACTTCTGTCTCT 60.246 47.826 0.00 0.00 0.00 3.10
2196 5459 3.100671 ACCCCACATCTACTTCTGTCTC 58.899 50.000 0.00 0.00 0.00 3.36
2197 5460 2.834549 CACCCCACATCTACTTCTGTCT 59.165 50.000 0.00 0.00 0.00 3.41
2198 5461 2.678190 GCACCCCACATCTACTTCTGTC 60.678 54.545 0.00 0.00 0.00 3.51
2199 5462 1.279271 GCACCCCACATCTACTTCTGT 59.721 52.381 0.00 0.00 0.00 3.41
2200 5463 1.556911 AGCACCCCACATCTACTTCTG 59.443 52.381 0.00 0.00 0.00 3.02
2201 5464 1.958288 AGCACCCCACATCTACTTCT 58.042 50.000 0.00 0.00 0.00 2.85
2202 5465 2.789409 AAGCACCCCACATCTACTTC 57.211 50.000 0.00 0.00 0.00 3.01
2203 5466 2.615493 CGAAAGCACCCCACATCTACTT 60.615 50.000 0.00 0.00 0.00 2.24
2204 5467 1.066143 CGAAAGCACCCCACATCTACT 60.066 52.381 0.00 0.00 0.00 2.57
2205 5468 1.066430 TCGAAAGCACCCCACATCTAC 60.066 52.381 0.00 0.00 0.00 2.59
2206 5469 1.207089 CTCGAAAGCACCCCACATCTA 59.793 52.381 0.00 0.00 0.00 1.98
2207 5470 0.036010 CTCGAAAGCACCCCACATCT 60.036 55.000 0.00 0.00 0.00 2.90
2208 5471 1.026718 CCTCGAAAGCACCCCACATC 61.027 60.000 0.00 0.00 0.00 3.06
2209 5472 1.002134 CCTCGAAAGCACCCCACAT 60.002 57.895 0.00 0.00 0.00 3.21
2210 5473 2.429930 CCTCGAAAGCACCCCACA 59.570 61.111 0.00 0.00 0.00 4.17
2211 5474 2.359975 CCCTCGAAAGCACCCCAC 60.360 66.667 0.00 0.00 0.00 4.61
2212 5475 1.497309 ATTCCCTCGAAAGCACCCCA 61.497 55.000 0.00 0.00 0.00 4.96
2213 5476 0.544697 TATTCCCTCGAAAGCACCCC 59.455 55.000 0.00 0.00 0.00 4.95
2214 5477 2.640316 ATATTCCCTCGAAAGCACCC 57.360 50.000 0.00 0.00 0.00 4.61
2215 5478 3.808174 GTGTATATTCCCTCGAAAGCACC 59.192 47.826 0.00 0.00 0.00 5.01
2216 5479 3.489785 CGTGTATATTCCCTCGAAAGCAC 59.510 47.826 0.00 0.00 0.00 4.40
2217 5480 3.131577 ACGTGTATATTCCCTCGAAAGCA 59.868 43.478 0.00 0.00 0.00 3.91
2218 5481 3.714391 ACGTGTATATTCCCTCGAAAGC 58.286 45.455 0.00 0.00 0.00 3.51
2219 5482 6.069684 AGTACGTGTATATTCCCTCGAAAG 57.930 41.667 0.00 0.00 0.00 2.62
2220 5483 6.455360 AAGTACGTGTATATTCCCTCGAAA 57.545 37.500 0.00 0.00 0.00 3.46
2221 5484 6.455360 AAAGTACGTGTATATTCCCTCGAA 57.545 37.500 0.00 0.00 0.00 3.71
2222 5485 6.992123 TCTAAAGTACGTGTATATTCCCTCGA 59.008 38.462 0.00 0.00 0.00 4.04
2223 5486 7.041508 ACTCTAAAGTACGTGTATATTCCCTCG 60.042 40.741 0.00 0.00 32.59 4.63
2224 5487 8.074972 CACTCTAAAGTACGTGTATATTCCCTC 58.925 40.741 0.00 0.00 33.25 4.30
2225 5488 7.559170 ACACTCTAAAGTACGTGTATATTCCCT 59.441 37.037 0.00 0.00 38.69 4.20
2226 5489 7.710896 ACACTCTAAAGTACGTGTATATTCCC 58.289 38.462 0.00 0.00 38.69 3.97
2227 5490 9.875675 CTACACTCTAAAGTACGTGTATATTCC 57.124 37.037 0.00 0.00 40.71 3.01
2232 5495 9.170734 TGAATCTACACTCTAAAGTACGTGTAT 57.829 33.333 0.00 0.00 40.71 2.29
2233 5496 8.446273 GTGAATCTACACTCTAAAGTACGTGTA 58.554 37.037 0.00 8.33 40.66 2.90
2234 5497 7.174599 AGTGAATCTACACTCTAAAGTACGTGT 59.825 37.037 0.00 7.08 46.36 4.49
2235 5498 7.528307 AGTGAATCTACACTCTAAAGTACGTG 58.472 38.462 0.00 0.00 46.36 4.49
2236 5499 7.684937 AGTGAATCTACACTCTAAAGTACGT 57.315 36.000 0.00 0.00 46.36 3.57
2248 5511 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2249 5512 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2250 5513 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2251 5514 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2252 5515 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2253 5516 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2254 5517 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2255 5518 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2256 5519 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2257 5520 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2258 5521 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2259 5522 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2260 5523 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
2261 5524 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
2262 5525 3.118884 ACGGACTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
2263 5526 2.231964 ACGGACTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
2264 5527 1.820519 ACGGACTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
2265 5528 1.466856 ACGGACTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
2266 5529 2.330440 TACGGACTACATACGGAGCA 57.670 50.000 0.00 0.00 0.00 4.26
2267 5530 3.562505 CAATACGGACTACATACGGAGC 58.437 50.000 0.00 0.00 0.00 4.70
2268 5531 3.817084 TCCAATACGGACTACATACGGAG 59.183 47.826 0.00 0.00 39.64 4.63
2269 5532 3.819368 TCCAATACGGACTACATACGGA 58.181 45.455 0.00 0.00 39.64 4.69
2270 5533 4.572985 TTCCAATACGGACTACATACGG 57.427 45.455 0.00 0.00 46.36 4.02
2271 5534 6.010294 AGATTCCAATACGGACTACATACG 57.990 41.667 0.00 0.00 46.36 3.06
2272 5535 7.216973 AGAGATTCCAATACGGACTACATAC 57.783 40.000 0.00 0.00 46.36 2.39
2273 5536 8.929260 TTAGAGATTCCAATACGGACTACATA 57.071 34.615 0.00 0.00 46.36 2.29
2274 5537 7.834881 TTAGAGATTCCAATACGGACTACAT 57.165 36.000 0.00 0.00 46.36 2.29
2275 5538 7.649533 TTTAGAGATTCCAATACGGACTACA 57.350 36.000 0.00 0.00 46.36 2.74
2276 5539 8.937634 TTTTTAGAGATTCCAATACGGACTAC 57.062 34.615 0.00 0.00 46.36 2.73
2277 5540 8.974238 TCTTTTTAGAGATTCCAATACGGACTA 58.026 33.333 0.00 0.00 46.36 2.59
2278 5541 7.764901 GTCTTTTTAGAGATTCCAATACGGACT 59.235 37.037 0.00 0.00 46.36 3.85
2279 5542 7.764901 AGTCTTTTTAGAGATTCCAATACGGAC 59.235 37.037 0.00 0.00 46.36 4.79
2280 5543 7.848128 AGTCTTTTTAGAGATTCCAATACGGA 58.152 34.615 0.00 0.00 44.40 4.69
2281 5544 8.391106 CAAGTCTTTTTAGAGATTCCAATACGG 58.609 37.037 0.00 0.00 0.00 4.02
2282 5545 8.936864 ACAAGTCTTTTTAGAGATTCCAATACG 58.063 33.333 0.00 0.00 0.00 3.06
2294 5557 9.211485 CCGTTCCTAAATACAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 34.90 2.10
2295 5558 9.211485 TCCGTTCCTAAATACAAGTCTTTTTAG 57.789 33.333 7.75 7.75 33.47 1.85
2296 5559 9.211485 CTCCGTTCCTAAATACAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
2297 5560 7.174426 CCTCCGTTCCTAAATACAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
2298 5561 6.653740 CCTCCGTTCCTAAATACAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
2299 5562 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2300 5563 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2301 5564 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2302 5565 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2303 5566 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
2304 5567 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
2305 5568 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
2306 5569 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
2307 5570 4.261952 GCTACTCCCTCCGTTCCTAAATAC 60.262 50.000 0.00 0.00 0.00 1.89
2308 5571 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
2309 5572 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
2310 5573 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
2311 5574 1.287146 AGCTACTCCCTCCGTTCCTAA 59.713 52.381 0.00 0.00 0.00 2.69
2312 5575 0.924823 AGCTACTCCCTCCGTTCCTA 59.075 55.000 0.00 0.00 0.00 2.94
2313 5576 0.684805 CAGCTACTCCCTCCGTTCCT 60.685 60.000 0.00 0.00 0.00 3.36
2314 5577 1.817209 CAGCTACTCCCTCCGTTCC 59.183 63.158 0.00 0.00 0.00 3.62
2315 5578 1.142097 GCAGCTACTCCCTCCGTTC 59.858 63.158 0.00 0.00 0.00 3.95
2316 5579 2.359967 GGCAGCTACTCCCTCCGTT 61.360 63.158 0.00 0.00 0.00 4.44
2317 5580 2.760385 GGCAGCTACTCCCTCCGT 60.760 66.667 0.00 0.00 0.00 4.69
2318 5581 2.443016 AGGCAGCTACTCCCTCCG 60.443 66.667 0.00 0.00 0.00 4.63
2319 5582 1.381872 TGAGGCAGCTACTCCCTCC 60.382 63.158 13.32 1.72 43.56 4.30
2320 5583 0.686112 AGTGAGGCAGCTACTCCCTC 60.686 60.000 13.32 12.89 44.28 4.30
2321 5584 0.686112 GAGTGAGGCAGCTACTCCCT 60.686 60.000 13.32 8.34 35.86 4.20
2322 5585 0.972983 TGAGTGAGGCAGCTACTCCC 60.973 60.000 16.90 4.04 39.98 4.30
2323 5586 1.118838 ATGAGTGAGGCAGCTACTCC 58.881 55.000 16.90 3.39 39.98 3.85
2324 5587 2.430332 AGAATGAGTGAGGCAGCTACTC 59.570 50.000 14.31 14.31 40.85 2.59
2325 5588 2.430332 GAGAATGAGTGAGGCAGCTACT 59.570 50.000 0.00 0.00 0.00 2.57
2326 5589 2.167281 TGAGAATGAGTGAGGCAGCTAC 59.833 50.000 0.00 0.00 0.00 3.58
2327 5590 2.167281 GTGAGAATGAGTGAGGCAGCTA 59.833 50.000 0.00 0.00 0.00 3.32
2333 5596 4.493547 GAGAGTTGTGAGAATGAGTGAGG 58.506 47.826 0.00 0.00 0.00 3.86
2334 5597 4.165036 CGAGAGTTGTGAGAATGAGTGAG 58.835 47.826 0.00 0.00 0.00 3.51
2367 5630 1.367840 GCCAGTTCTGTCGTCCAGT 59.632 57.895 5.09 0.00 42.19 4.00
2374 5637 1.072159 AGCCAGTGCCAGTTCTGTC 59.928 57.895 0.00 0.00 38.69 3.51
2377 5640 0.106519 AAACAGCCAGTGCCAGTTCT 60.107 50.000 0.00 0.00 35.82 3.01
2403 5666 6.687901 GCCCCAAATCCTGACTTTTACTTTTT 60.688 38.462 0.00 0.00 0.00 1.94
2404 5667 5.221641 GCCCCAAATCCTGACTTTTACTTTT 60.222 40.000 0.00 0.00 0.00 2.27
2411 5674 2.043526 AGATGCCCCAAATCCTGACTTT 59.956 45.455 0.00 0.00 0.00 2.66
2428 5700 4.318332 TGAGCACCTAGAAACAACAGATG 58.682 43.478 0.00 0.00 0.00 2.90
2544 5862 7.753580 TGTTGTGAGTAGTGAATACTGAATACG 59.246 37.037 0.00 0.00 45.06 3.06
2545 5863 8.981724 TGTTGTGAGTAGTGAATACTGAATAC 57.018 34.615 0.00 0.00 45.06 1.89
2546 5864 9.803315 GATGTTGTGAGTAGTGAATACTGAATA 57.197 33.333 0.00 0.00 45.06 1.75
2547 5865 7.766278 GGATGTTGTGAGTAGTGAATACTGAAT 59.234 37.037 0.00 0.00 45.06 2.57
2548 5866 7.097192 GGATGTTGTGAGTAGTGAATACTGAA 58.903 38.462 0.00 0.00 45.06 3.02
2549 5867 6.210584 TGGATGTTGTGAGTAGTGAATACTGA 59.789 38.462 0.00 0.00 45.06 3.41
2550 5868 6.398095 TGGATGTTGTGAGTAGTGAATACTG 58.602 40.000 0.00 0.00 45.06 2.74
2567 5885 6.942005 TGACACAGTGATATTTTCTGGATGTT 59.058 34.615 7.81 0.00 34.02 2.71
2635 5953 9.969001 AAAGGCCTTACTTATTTAACAGTATGA 57.031 29.630 20.84 0.00 39.69 2.15
2652 5970 5.774102 AAGGAAAGCTACTAAAGGCCTTA 57.226 39.130 20.84 1.13 33.08 2.69
2675 5994 0.614415 ATCCATTGCGGGCAAAAGGA 60.614 50.000 23.94 23.94 43.33 3.36
2702 6021 4.899352 AACTGACAGCCTTATCAGAGTT 57.101 40.909 9.26 0.00 44.32 3.01
2803 6122 8.797438 CAAAAGGAAAGGAAAGCTACTAAAGAT 58.203 33.333 0.00 0.00 0.00 2.40
2804 6123 7.996644 TCAAAAGGAAAGGAAAGCTACTAAAGA 59.003 33.333 0.00 0.00 0.00 2.52
2834 6182 3.467803 GAAGGAATGCTACTTATGCCGT 58.532 45.455 0.00 0.00 0.00 5.68
2890 6238 1.683011 GCTGCAGCCATTTCCCTCTAA 60.683 52.381 28.76 0.00 34.31 2.10
2891 6239 0.107017 GCTGCAGCCATTTCCCTCTA 60.107 55.000 28.76 0.00 34.31 2.43
2892 6240 1.379576 GCTGCAGCCATTTCCCTCT 60.380 57.895 28.76 0.00 34.31 3.69
2893 6241 3.204418 GCTGCAGCCATTTCCCTC 58.796 61.111 28.76 0.00 34.31 4.30
2951 6299 7.926018 AGCTTTTACTTTCCCAAATAAGTTGTG 59.074 33.333 0.00 0.00 36.16 3.33
3067 6577 9.908152 CGGTTATCTGTCATACATAAGTATCAA 57.092 33.333 0.00 0.00 38.88 2.57
3363 6874 9.372369 CAGAATCGAATAAATAAGGGGATCTAC 57.628 37.037 0.00 0.00 0.00 2.59
3365 6876 8.207350 TCAGAATCGAATAAATAAGGGGATCT 57.793 34.615 0.00 0.00 0.00 2.75
3370 6881 8.893727 AGTTGTTCAGAATCGAATAAATAAGGG 58.106 33.333 0.00 0.00 29.30 3.95
3387 6898 8.883954 ATCTATCATACATGACAGTTGTTCAG 57.116 34.615 0.00 0.00 40.03 3.02
3424 6935 5.101628 GCAAGTTGTGAAATGTCAGACAAA 58.898 37.500 7.50 0.00 33.27 2.83
3553 7065 2.881111 TCTCTCTCTCGGTTTCTGGA 57.119 50.000 0.00 0.00 0.00 3.86
3672 7184 0.612229 CTTCAGCCTCTCAGCCTCAA 59.388 55.000 0.00 0.00 0.00 3.02
3700 7212 0.759346 AGAAAACACGACCCTCTGCT 59.241 50.000 0.00 0.00 0.00 4.24
3886 7398 2.225068 AACACAGTCTCTGTCCAACG 57.775 50.000 0.00 0.00 43.43 4.10
3940 7452 6.042208 CCCAAAAGATAGCCTAGCTACTTACT 59.958 42.308 0.00 0.00 44.24 2.24
3948 7460 1.950216 GCACCCAAAAGATAGCCTAGC 59.050 52.381 0.00 0.00 0.00 3.42
3958 7470 3.525268 ACTCAAAACTGCACCCAAAAG 57.475 42.857 0.00 0.00 0.00 2.27
3973 7486 9.770097 CCTGAAGATATGAGCTTAATTACTCAA 57.230 33.333 9.20 2.03 45.49 3.02
3989 7502 4.820716 GCTGACTTGATTGCCTGAAGATAT 59.179 41.667 0.00 0.00 0.00 1.63
3999 7512 8.915871 TTAAATAGAAATGCTGACTTGATTGC 57.084 30.769 0.00 0.00 0.00 3.56
4063 7578 9.035607 CATACATAACATCTTCAGTGGTAACTC 57.964 37.037 0.00 0.00 32.98 3.01
4069 7584 6.481313 CCAGTCATACATAACATCTTCAGTGG 59.519 42.308 0.00 0.00 0.00 4.00
4139 7664 6.959311 CGTTATTCTTCACATTACGGGAAAAG 59.041 38.462 0.00 0.00 0.00 2.27
4156 7681 7.485913 GCAATCACAATTTGACATCGTTATTCT 59.514 33.333 2.79 0.00 36.92 2.40
4276 7801 1.438651 GCCTTGTTACATGAGCGACA 58.561 50.000 0.00 0.00 0.00 4.35
4297 7822 0.670546 CCTCGCTTTTTCGGAGCTCA 60.671 55.000 17.19 0.00 37.99 4.26
4361 7886 7.560626 CCAGGTACAAAAGAGTAGAGGTATAGT 59.439 40.741 0.00 0.00 0.00 2.12
4373 7898 7.745620 AAGTATTCAACCAGGTACAAAAGAG 57.254 36.000 0.00 0.00 0.00 2.85
4486 8016 4.572389 CGGATGTTAACTCCATTCTTCAGG 59.428 45.833 18.33 0.00 32.72 3.86
4501 8031 1.532007 GGAACAACGTTGCGGATGTTA 59.468 47.619 27.61 0.00 39.62 2.41
4597 8127 0.618458 TATGGCTGGAACCAGTGACC 59.382 55.000 19.97 13.85 44.71 4.02
4676 8206 4.476628 TCTTATCTGCTGCTGATGTTCA 57.523 40.909 26.15 8.56 0.00 3.18
4677 8207 4.260702 GCTTCTTATCTGCTGCTGATGTTC 60.261 45.833 26.15 9.88 0.00 3.18
4678 8208 3.626670 GCTTCTTATCTGCTGCTGATGTT 59.373 43.478 26.15 8.88 0.00 2.71
4679 8209 3.204526 GCTTCTTATCTGCTGCTGATGT 58.795 45.455 26.15 9.52 0.00 3.06
4867 8403 5.220931 GCCTCTATCTTTGTTTACATGCTGG 60.221 44.000 0.00 0.00 0.00 4.85
4921 8468 5.374921 CCCATGCTGACAAGAGAATTATCT 58.625 41.667 0.00 0.00 39.10 1.98
5051 8604 6.037610 ACCGTTCTGAATCTCATGATAAAAGC 59.962 38.462 0.00 0.00 31.70 3.51
5095 8648 8.575589 AGAATCAATCACTAGCAGTAGTAGATG 58.424 37.037 0.00 0.00 37.40 2.90
5123 8680 4.818005 TGTACATGATGATTCAGACATGCC 59.182 41.667 23.95 18.46 42.28 4.40
5184 8741 0.679002 ACAGCATCATCCACCAGCAC 60.679 55.000 0.00 0.00 0.00 4.40
5185 8742 0.911053 TACAGCATCATCCACCAGCA 59.089 50.000 0.00 0.00 0.00 4.41
5186 8743 1.590932 CTACAGCATCATCCACCAGC 58.409 55.000 0.00 0.00 0.00 4.85
5187 8744 1.590932 GCTACAGCATCATCCACCAG 58.409 55.000 0.00 0.00 41.59 4.00
5188 8745 3.786656 GCTACAGCATCATCCACCA 57.213 52.632 0.00 0.00 41.59 4.17
5202 8759 3.069289 TGATGATGATTCCGCATGCTAC 58.931 45.455 17.13 3.05 0.00 3.58
5243 8800 5.236047 CAGCAGATAAGTGTAGATCAAAGCC 59.764 44.000 0.00 0.00 0.00 4.35
5244 8801 6.045318 TCAGCAGATAAGTGTAGATCAAAGC 58.955 40.000 0.00 0.00 0.00 3.51
5245 8802 7.763528 ACTTCAGCAGATAAGTGTAGATCAAAG 59.236 37.037 0.00 0.00 34.70 2.77
5247 8804 7.175347 ACTTCAGCAGATAAGTGTAGATCAA 57.825 36.000 0.00 0.00 34.70 2.57
5267 8825 8.260270 ACCAGTATTCCGTATTTTGTAACTTC 57.740 34.615 0.00 0.00 0.00 3.01
5282 8840 7.607991 CCAACCTATGATCATAACCAGTATTCC 59.392 40.741 16.08 0.00 0.00 3.01
5283 8841 7.607991 CCCAACCTATGATCATAACCAGTATTC 59.392 40.741 16.08 0.00 0.00 1.75
5284 8842 7.073725 ACCCAACCTATGATCATAACCAGTATT 59.926 37.037 16.08 1.55 0.00 1.89
5285 8843 6.562608 ACCCAACCTATGATCATAACCAGTAT 59.437 38.462 16.08 0.00 0.00 2.12
5290 8848 5.070685 GGAACCCAACCTATGATCATAACC 58.929 45.833 16.08 5.68 0.00 2.85
5293 8851 4.202461 GCAGGAACCCAACCTATGATCATA 60.202 45.833 14.64 14.64 35.84 2.15
5299 8857 2.428171 CAATGCAGGAACCCAACCTATG 59.572 50.000 0.00 0.00 35.84 2.23
5311 8869 1.077930 GAGGAGCAGCAATGCAGGA 60.078 57.895 8.35 0.00 37.25 3.86
5313 8871 1.138464 TCTAGAGGAGCAGCAATGCAG 59.862 52.381 8.35 0.00 37.25 4.41
5314 8872 1.134580 GTCTAGAGGAGCAGCAATGCA 60.135 52.381 8.35 0.00 37.25 3.96
5315 8873 1.134580 TGTCTAGAGGAGCAGCAATGC 60.135 52.381 0.00 0.00 0.00 3.56
5316 8874 2.975732 TGTCTAGAGGAGCAGCAATG 57.024 50.000 0.00 0.00 0.00 2.82
5317 8875 4.502950 GCTATTGTCTAGAGGAGCAGCAAT 60.503 45.833 0.00 0.15 0.00 3.56
5318 8876 3.181471 GCTATTGTCTAGAGGAGCAGCAA 60.181 47.826 0.00 0.00 0.00 3.91
5320 8878 2.627699 AGCTATTGTCTAGAGGAGCAGC 59.372 50.000 14.28 10.11 32.28 5.25
5370 8930 1.341531 GCCGTCAGTAGCCATGATACT 59.658 52.381 0.00 0.00 34.97 2.12
5412 8973 1.140804 GCAGCTCCGAGGAAGAGAC 59.859 63.158 0.00 0.00 32.86 3.36
5417 8978 2.283894 TCCAGCAGCTCCGAGGAA 60.284 61.111 0.00 0.00 0.00 3.36
5447 9008 0.393077 CGGTTCCTCCACAGTTCAGT 59.607 55.000 0.00 0.00 35.57 3.41
5448 9009 0.951040 GCGGTTCCTCCACAGTTCAG 60.951 60.000 0.00 0.00 35.57 3.02
5511 9072 0.320374 AGCAGGATGAACGAACGGAA 59.680 50.000 0.00 0.00 39.69 4.30
5519 9080 0.247736 AGGACGTCAGCAGGATGAAC 59.752 55.000 18.91 0.00 39.69 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.