Multiple sequence alignment - TraesCS5D01G311400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G311400 chr5D 100.000 3062 0 0 1 3062 407780273 407777212 0.000000e+00 5655.0
1 TraesCS5D01G311400 chr5D 90.339 590 24 7 272 841 531428572 531429148 0.000000e+00 743.0
2 TraesCS5D01G311400 chr5D 91.087 460 29 3 988 1441 407761758 407761305 2.020000e-171 612.0
3 TraesCS5D01G311400 chr5D 82.759 580 72 17 1420 1994 407761419 407760863 2.740000e-135 492.0
4 TraesCS5D01G311400 chr5D 91.638 287 16 6 1 279 531428250 531428536 1.030000e-104 390.0
5 TraesCS5D01G311400 chr5D 87.549 257 29 3 272 525 334002104 334001848 8.300000e-76 294.0
6 TraesCS5D01G311400 chr3D 89.950 597 33 6 272 844 438937774 438938367 0.000000e+00 745.0
7 TraesCS5D01G311400 chr3D 88.694 628 36 13 2467 3062 481517097 481517721 0.000000e+00 734.0
8 TraesCS5D01G311400 chr3D 81.261 587 48 26 2468 3017 385435302 385435863 4.720000e-113 418.0
9 TraesCS5D01G311400 chr3D 91.349 289 15 6 1 279 438937450 438937738 1.330000e-103 387.0
10 TraesCS5D01G311400 chr3D 83.945 218 27 7 272 482 5670332 5670548 5.180000e-48 202.0
11 TraesCS5D01G311400 chr7D 88.942 624 39 12 2468 3062 580170695 580170073 0.000000e+00 743.0
12 TraesCS5D01G311400 chr7D 85.714 637 44 17 2471 3062 263971549 263970915 2.000000e-176 628.0
13 TraesCS5D01G311400 chr7D 90.000 340 27 4 272 611 612684226 612683894 1.690000e-117 433.0
14 TraesCS5D01G311400 chr7D 88.274 307 24 5 2768 3062 101778755 101778449 1.040000e-94 357.0
15 TraesCS5D01G311400 chr7D 89.347 291 19 7 1 279 612684552 612684262 3.760000e-94 355.0
16 TraesCS5D01G311400 chr7D 94.000 100 3 3 747 843 612665501 612665402 6.840000e-32 148.0
17 TraesCS5D01G311400 chr7B 86.478 636 44 20 2467 3062 74585719 74586352 0.000000e+00 660.0
18 TraesCS5D01G311400 chr6D 85.849 636 43 23 2471 3062 473514599 473513967 1.550000e-177 632.0
19 TraesCS5D01G311400 chr5A 85.940 633 41 20 2471 3062 36023131 36023756 1.550000e-177 632.0
20 TraesCS5D01G311400 chr5A 90.239 461 33 5 987 1441 513232528 513232074 2.630000e-165 592.0
21 TraesCS5D01G311400 chr5A 82.305 616 73 22 1420 2028 513232188 513231602 4.560000e-138 501.0
22 TraesCS5D01G311400 chr5A 87.500 256 30 2 272 525 524960670 524960925 8.300000e-76 294.0
23 TraesCS5D01G311400 chr1B 85.648 648 39 17 2455 3062 264764274 264764907 1.550000e-177 632.0
24 TraesCS5D01G311400 chr5B 88.368 533 46 9 916 1439 488825935 488825410 7.210000e-176 627.0
25 TraesCS5D01G311400 chr5B 83.622 635 61 15 2460 3062 507687090 507687713 9.590000e-155 556.0
26 TraesCS5D01G311400 chr5B 82.131 610 69 25 1428 2028 488825514 488824936 1.280000e-133 486.0
27 TraesCS5D01G311400 chr6B 84.154 650 43 29 2468 3062 693998203 693998847 2.650000e-160 575.0
28 TraesCS5D01G311400 chr6B 85.305 524 38 15 2468 2958 693952331 693952848 3.520000e-139 505.0
29 TraesCS5D01G311400 chr6B 85.143 525 38 16 2468 2958 693957893 693958411 4.560000e-138 501.0
30 TraesCS5D01G311400 chr6B 82.362 635 54 34 2468 3062 58071823 58072439 1.640000e-137 499.0
31 TraesCS5D01G311400 chr6B 84.924 524 40 15 2468 2958 693975904 693976421 7.630000e-136 494.0
32 TraesCS5D01G311400 chr6B 84.762 525 40 16 2468 2958 693981091 693981609 9.870000e-135 490.0
33 TraesCS5D01G311400 chr6B 88.261 230 16 2 608 837 4812554 4812772 6.510000e-67 265.0
34 TraesCS5D01G311400 chrUn 84.762 525 40 16 2468 2958 419198904 419199422 9.870000e-135 490.0
35 TraesCS5D01G311400 chrUn 87.160 257 30 3 272 525 29894614 29894358 3.860000e-74 289.0
36 TraesCS5D01G311400 chr1D 81.250 640 63 28 2468 3062 492483155 492483782 5.980000e-127 464.0
37 TraesCS5D01G311400 chr2A 83.376 391 39 17 2692 3062 133681413 133681797 3.780000e-89 339.0
38 TraesCS5D01G311400 chr3A 87.636 275 21 11 23 285 126055439 126055712 1.070000e-79 307.0
39 TraesCS5D01G311400 chr3A 85.827 254 33 3 272 522 694945205 694944952 1.810000e-67 267.0
40 TraesCS5D01G311400 chr3A 88.333 180 14 1 659 838 126086231 126086403 3.090000e-50 209.0
41 TraesCS5D01G311400 chr3A 100.000 31 0 0 1 31 126037526 126037556 1.190000e-04 58.4
42 TraesCS5D01G311400 chr6A 86.381 257 32 3 272 525 502545554 502545298 8.360000e-71 278.0
43 TraesCS5D01G311400 chr2B 92.453 159 12 0 2466 2624 58088561 58088719 8.540000e-56 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G311400 chr5D 407777212 407780273 3061 True 5655.0 5655 100.0000 1 3062 1 chr5D.!!$R2 3061
1 TraesCS5D01G311400 chr5D 531428250 531429148 898 False 566.5 743 90.9885 1 841 2 chr5D.!!$F1 840
2 TraesCS5D01G311400 chr5D 407760863 407761758 895 True 552.0 612 86.9230 988 1994 2 chr5D.!!$R3 1006
3 TraesCS5D01G311400 chr3D 481517097 481517721 624 False 734.0 734 88.6940 2467 3062 1 chr3D.!!$F3 595
4 TraesCS5D01G311400 chr3D 438937450 438938367 917 False 566.0 745 90.6495 1 844 2 chr3D.!!$F4 843
5 TraesCS5D01G311400 chr3D 385435302 385435863 561 False 418.0 418 81.2610 2468 3017 1 chr3D.!!$F2 549
6 TraesCS5D01G311400 chr7D 580170073 580170695 622 True 743.0 743 88.9420 2468 3062 1 chr7D.!!$R3 594
7 TraesCS5D01G311400 chr7D 263970915 263971549 634 True 628.0 628 85.7140 2471 3062 1 chr7D.!!$R2 591
8 TraesCS5D01G311400 chr7D 612683894 612684552 658 True 394.0 433 89.6735 1 611 2 chr7D.!!$R5 610
9 TraesCS5D01G311400 chr7B 74585719 74586352 633 False 660.0 660 86.4780 2467 3062 1 chr7B.!!$F1 595
10 TraesCS5D01G311400 chr6D 473513967 473514599 632 True 632.0 632 85.8490 2471 3062 1 chr6D.!!$R1 591
11 TraesCS5D01G311400 chr5A 36023131 36023756 625 False 632.0 632 85.9400 2471 3062 1 chr5A.!!$F1 591
12 TraesCS5D01G311400 chr5A 513231602 513232528 926 True 546.5 592 86.2720 987 2028 2 chr5A.!!$R1 1041
13 TraesCS5D01G311400 chr1B 264764274 264764907 633 False 632.0 632 85.6480 2455 3062 1 chr1B.!!$F1 607
14 TraesCS5D01G311400 chr5B 488824936 488825935 999 True 556.5 627 85.2495 916 2028 2 chr5B.!!$R1 1112
15 TraesCS5D01G311400 chr5B 507687090 507687713 623 False 556.0 556 83.6220 2460 3062 1 chr5B.!!$F1 602
16 TraesCS5D01G311400 chr6B 693998203 693998847 644 False 575.0 575 84.1540 2468 3062 1 chr6B.!!$F7 594
17 TraesCS5D01G311400 chr6B 693952331 693952848 517 False 505.0 505 85.3050 2468 2958 1 chr6B.!!$F3 490
18 TraesCS5D01G311400 chr6B 693957893 693958411 518 False 501.0 501 85.1430 2468 2958 1 chr6B.!!$F4 490
19 TraesCS5D01G311400 chr6B 58071823 58072439 616 False 499.0 499 82.3620 2468 3062 1 chr6B.!!$F2 594
20 TraesCS5D01G311400 chr6B 693975904 693976421 517 False 494.0 494 84.9240 2468 2958 1 chr6B.!!$F5 490
21 TraesCS5D01G311400 chr6B 693981091 693981609 518 False 490.0 490 84.7620 2468 2958 1 chr6B.!!$F6 490
22 TraesCS5D01G311400 chrUn 419198904 419199422 518 False 490.0 490 84.7620 2468 2958 1 chrUn.!!$F1 490
23 TraesCS5D01G311400 chr1D 492483155 492483782 627 False 464.0 464 81.2500 2468 3062 1 chr1D.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 967 0.105090 TAGTACCACCACCACCACCA 60.105 55.0 0.0 0.0 0.0 4.17 F
1515 1620 0.038159 AGCAGCAGTACAACGTCTCC 60.038 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2142 0.038159 AGGCTTGAGCTCGTACACAC 60.038 55.0 9.64 0.0 41.7 3.82 R
2628 2755 0.743688 TGCACGCACCAAAATTCAGT 59.256 45.0 0.00 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.830741 CCAAGAAATCCCCATATCTTATACTCT 58.169 37.037 0.00 0.00 31.25 3.24
62 63 4.107622 GCACAAGATAAATCACACATGCC 58.892 43.478 0.00 0.00 0.00 4.40
340 402 4.425577 AACTAGCACTGCATTAACTTGC 57.574 40.909 3.30 0.00 43.07 4.01
377 439 3.291584 TGGGTTTGTTGCATCACAGTAA 58.708 40.909 0.00 0.00 0.00 2.24
383 445 4.071961 TGTTGCATCACAGTAACTGAGT 57.928 40.909 0.00 0.00 35.50 3.41
384 446 3.809279 TGTTGCATCACAGTAACTGAGTG 59.191 43.478 0.00 0.00 35.50 3.51
458 520 6.127535 ACAGAAATGCCAAATGATTACCTGAG 60.128 38.462 0.00 0.00 0.00 3.35
519 582 0.610174 ATCGCTCATGTCCAGTGTGT 59.390 50.000 0.00 0.00 0.00 3.72
550 613 2.360350 CGACCTGTGCATGGCCTT 60.360 61.111 3.32 0.00 0.00 4.35
562 625 3.577848 TGCATGGCCTTCAAGTAAATGTT 59.422 39.130 3.32 0.00 0.00 2.71
564 627 5.421693 TGCATGGCCTTCAAGTAAATGTTAT 59.578 36.000 3.32 0.00 0.00 1.89
638 720 6.688637 TGTGGAAAATTCATATCTGCTCTG 57.311 37.500 0.00 0.00 0.00 3.35
642 724 6.060788 GGAAAATTCATATCTGCTCTGGAGT 58.939 40.000 0.00 0.00 0.00 3.85
692 774 3.367932 CGTGTACAAATCTAGCACACCAG 59.632 47.826 0.00 0.00 36.91 4.00
711 793 1.185315 GCCATGGCACCTGTGTATTT 58.815 50.000 32.08 0.00 41.49 1.40
726 808 6.260936 CCTGTGTATTTCCACTTAATAGCCAG 59.739 42.308 0.00 0.00 36.30 4.85
757 850 9.265938 CATGCATCGTAAATGTACTATAAATGC 57.734 33.333 0.00 0.00 0.00 3.56
758 851 8.371770 TGCATCGTAAATGTACTATAAATGCA 57.628 30.769 11.86 11.86 0.00 3.96
759 852 8.279800 TGCATCGTAAATGTACTATAAATGCAC 58.720 33.333 11.86 0.00 0.00 4.57
843 936 2.298163 CCAAAATGCTCCACTCTGCTTT 59.702 45.455 0.00 0.00 0.00 3.51
844 937 3.572584 CAAAATGCTCCACTCTGCTTTC 58.427 45.455 0.00 0.00 0.00 2.62
845 938 2.875094 AATGCTCCACTCTGCTTTCT 57.125 45.000 0.00 0.00 0.00 2.52
846 939 2.399916 ATGCTCCACTCTGCTTTCTC 57.600 50.000 0.00 0.00 0.00 2.87
847 940 0.322975 TGCTCCACTCTGCTTTCTCC 59.677 55.000 0.00 0.00 0.00 3.71
848 941 0.322975 GCTCCACTCTGCTTTCTCCA 59.677 55.000 0.00 0.00 0.00 3.86
849 942 1.943507 GCTCCACTCTGCTTTCTCCAC 60.944 57.143 0.00 0.00 0.00 4.02
850 943 0.687354 TCCACTCTGCTTTCTCCACC 59.313 55.000 0.00 0.00 0.00 4.61
851 944 0.689623 CCACTCTGCTTTCTCCACCT 59.310 55.000 0.00 0.00 0.00 4.00
852 945 1.902508 CCACTCTGCTTTCTCCACCTA 59.097 52.381 0.00 0.00 0.00 3.08
853 946 2.503356 CCACTCTGCTTTCTCCACCTAT 59.497 50.000 0.00 0.00 0.00 2.57
854 947 3.706594 CCACTCTGCTTTCTCCACCTATA 59.293 47.826 0.00 0.00 0.00 1.31
855 948 4.346418 CCACTCTGCTTTCTCCACCTATAT 59.654 45.833 0.00 0.00 0.00 0.86
856 949 5.540337 CCACTCTGCTTTCTCCACCTATATA 59.460 44.000 0.00 0.00 0.00 0.86
857 950 6.295011 CCACTCTGCTTTCTCCACCTATATAG 60.295 46.154 2.46 2.46 0.00 1.31
858 951 6.266558 CACTCTGCTTTCTCCACCTATATAGT 59.733 42.308 8.92 0.00 0.00 2.12
859 952 7.448777 CACTCTGCTTTCTCCACCTATATAGTA 59.551 40.741 8.92 0.00 0.00 1.82
860 953 7.449086 ACTCTGCTTTCTCCACCTATATAGTAC 59.551 40.741 8.92 0.00 0.00 2.73
861 954 6.720288 TCTGCTTTCTCCACCTATATAGTACC 59.280 42.308 8.92 0.00 0.00 3.34
862 955 6.378745 TGCTTTCTCCACCTATATAGTACCA 58.621 40.000 8.92 0.00 0.00 3.25
863 956 6.267014 TGCTTTCTCCACCTATATAGTACCAC 59.733 42.308 8.92 0.00 0.00 4.16
864 957 6.295180 GCTTTCTCCACCTATATAGTACCACC 60.295 46.154 8.92 0.00 0.00 4.61
865 958 5.935668 TCTCCACCTATATAGTACCACCA 57.064 43.478 8.92 0.00 0.00 4.17
866 959 5.638133 TCTCCACCTATATAGTACCACCAC 58.362 45.833 8.92 0.00 0.00 4.16
867 960 4.744237 TCCACCTATATAGTACCACCACC 58.256 47.826 8.92 0.00 0.00 4.61
868 961 4.170449 TCCACCTATATAGTACCACCACCA 59.830 45.833 8.92 0.00 0.00 4.17
869 962 4.282703 CCACCTATATAGTACCACCACCAC 59.717 50.000 8.92 0.00 0.00 4.16
870 963 4.282703 CACCTATATAGTACCACCACCACC 59.717 50.000 8.92 0.00 0.00 4.61
871 964 4.078454 ACCTATATAGTACCACCACCACCA 60.078 45.833 8.92 0.00 0.00 4.17
872 965 4.282703 CCTATATAGTACCACCACCACCAC 59.717 50.000 8.92 0.00 0.00 4.16
873 966 1.282382 ATAGTACCACCACCACCACC 58.718 55.000 0.00 0.00 0.00 4.61
874 967 0.105090 TAGTACCACCACCACCACCA 60.105 55.000 0.00 0.00 0.00 4.17
875 968 1.228033 GTACCACCACCACCACCAC 60.228 63.158 0.00 0.00 0.00 4.16
876 969 2.453812 TACCACCACCACCACCACC 61.454 63.158 0.00 0.00 0.00 4.61
877 970 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
878 971 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
879 972 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
880 973 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
881 974 2.520458 CACCACCACCACCACCAT 59.480 61.111 0.00 0.00 0.00 3.55
882 975 1.603455 CACCACCACCACCACCATC 60.603 63.158 0.00 0.00 0.00 3.51
883 976 2.035626 CCACCACCACCACCATCC 59.964 66.667 0.00 0.00 0.00 3.51
884 977 2.035626 CACCACCACCACCATCCC 59.964 66.667 0.00 0.00 0.00 3.85
885 978 3.264845 ACCACCACCACCATCCCC 61.265 66.667 0.00 0.00 0.00 4.81
886 979 4.424711 CCACCACCACCATCCCCG 62.425 72.222 0.00 0.00 0.00 5.73
887 980 4.424711 CACCACCACCATCCCCGG 62.425 72.222 0.00 0.00 0.00 5.73
888 981 4.995058 ACCACCACCATCCCCGGT 62.995 66.667 0.00 0.00 41.07 5.28
889 982 3.657350 CCACCACCATCCCCGGTT 61.657 66.667 0.00 0.00 37.07 4.44
890 983 2.045340 CACCACCATCCCCGGTTC 60.045 66.667 0.00 0.00 37.07 3.62
891 984 2.530661 ACCACCATCCCCGGTTCA 60.531 61.111 0.00 0.00 37.07 3.18
892 985 2.045340 CCACCATCCCCGGTTCAC 60.045 66.667 0.00 0.00 37.07 3.18
893 986 2.045340 CACCATCCCCGGTTCACC 60.045 66.667 0.00 0.00 37.07 4.02
894 987 2.530661 ACCATCCCCGGTTCACCA 60.531 61.111 0.00 0.00 34.91 4.17
895 988 2.045340 CCATCCCCGGTTCACCAC 60.045 66.667 0.00 0.00 35.14 4.16
896 989 2.045340 CATCCCCGGTTCACCACC 60.045 66.667 0.00 0.00 43.16 4.61
903 996 2.598467 GGTTCACCACCACCACCA 59.402 61.111 0.00 0.00 46.42 4.17
904 997 1.826487 GGTTCACCACCACCACCAC 60.826 63.158 0.00 0.00 46.42 4.16
905 998 1.826487 GTTCACCACCACCACCACC 60.826 63.158 0.00 0.00 0.00 4.61
906 999 2.309504 TTCACCACCACCACCACCA 61.310 57.895 0.00 0.00 0.00 4.17
907 1000 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
908 1001 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
909 1002 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
910 1003 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
911 1004 4.183858 ACCACCACCACCACCACG 62.184 66.667 0.00 0.00 0.00 4.94
912 1005 3.867783 CCACCACCACCACCACGA 61.868 66.667 0.00 0.00 0.00 4.35
913 1006 2.280797 CACCACCACCACCACGAG 60.281 66.667 0.00 0.00 0.00 4.18
914 1007 3.556306 ACCACCACCACCACGAGG 61.556 66.667 0.00 0.00 42.21 4.63
961 1054 4.715892 TGCACATCGCGAGCACGA 62.716 61.111 16.66 2.95 46.97 4.35
962 1055 3.478394 GCACATCGCGAGCACGAA 61.478 61.111 16.66 0.00 46.59 3.85
971 1064 1.540407 GCGAGCACGAAGAGAACTAG 58.460 55.000 8.01 0.00 42.66 2.57
972 1065 1.135632 GCGAGCACGAAGAGAACTAGT 60.136 52.381 8.01 0.00 42.66 2.57
973 1066 2.095532 GCGAGCACGAAGAGAACTAGTA 59.904 50.000 8.01 0.00 42.66 1.82
974 1067 3.242804 GCGAGCACGAAGAGAACTAGTAT 60.243 47.826 8.01 0.00 42.66 2.12
975 1068 4.520078 CGAGCACGAAGAGAACTAGTATC 58.480 47.826 0.00 0.00 42.66 2.24
976 1069 4.271533 CGAGCACGAAGAGAACTAGTATCT 59.728 45.833 0.00 0.00 42.66 1.98
977 1070 5.557514 CGAGCACGAAGAGAACTAGTATCTC 60.558 48.000 19.27 19.27 41.55 2.75
978 1071 5.186942 AGCACGAAGAGAACTAGTATCTCA 58.813 41.667 24.48 0.00 44.64 3.27
982 1075 6.537301 CACGAAGAGAACTAGTATCTCACTCT 59.463 42.308 24.48 12.24 44.64 3.24
1115 1214 2.037367 CGTCCAGAGGGAGGTGGA 59.963 66.667 0.00 0.00 46.12 4.02
1275 1380 0.875728 ACTGTCTCCTCGACTTCACG 59.124 55.000 0.00 0.00 43.25 4.35
1377 1482 3.706373 AAGGCCAGCGTCGTGGAT 61.706 61.111 5.01 3.24 40.44 3.41
1393 1498 1.648467 GGATCTCAACCAGCGCAACC 61.648 60.000 11.47 0.00 0.00 3.77
1417 1522 3.210223 TACAACGTCTTCGCCGCCA 62.210 57.895 0.00 0.00 41.18 5.69
1455 1560 3.917760 GCCGACCTCATCCGGGAG 61.918 72.222 0.00 0.20 45.42 4.30
1456 1561 3.917760 CCGACCTCATCCGGGAGC 61.918 72.222 0.00 0.00 41.89 4.70
1457 1562 2.835431 CGACCTCATCCGGGAGCT 60.835 66.667 0.00 0.00 33.47 4.09
1458 1563 2.851071 CGACCTCATCCGGGAGCTC 61.851 68.421 4.71 4.71 33.47 4.09
1459 1564 1.758514 GACCTCATCCGGGAGCTCA 60.759 63.158 17.19 0.00 33.47 4.26
1460 1565 1.306141 ACCTCATCCGGGAGCTCAA 60.306 57.895 17.19 0.00 33.47 3.02
1461 1566 1.333636 ACCTCATCCGGGAGCTCAAG 61.334 60.000 17.19 8.39 33.47 3.02
1462 1567 1.445095 CTCATCCGGGAGCTCAAGG 59.555 63.158 17.19 17.47 0.00 3.61
1463 1568 2.203126 CATCCGGGAGCTCAAGGC 60.203 66.667 17.19 0.00 42.19 4.35
1464 1569 3.483869 ATCCGGGAGCTCAAGGCC 61.484 66.667 17.19 6.35 43.05 5.19
1466 1571 3.801997 CCGGGAGCTCAAGGCCAT 61.802 66.667 17.19 0.00 43.05 4.40
1467 1572 2.203126 CGGGAGCTCAAGGCCATC 60.203 66.667 17.19 0.00 43.05 3.51
1468 1573 2.203126 GGGAGCTCAAGGCCATCG 60.203 66.667 17.19 0.00 43.05 3.84
1469 1574 2.586792 GGAGCTCAAGGCCATCGT 59.413 61.111 17.19 0.00 43.05 3.73
1470 1575 1.522580 GGAGCTCAAGGCCATCGTC 60.523 63.158 17.19 0.00 43.05 4.20
1471 1576 1.880340 GAGCTCAAGGCCATCGTCG 60.880 63.158 9.40 0.00 43.05 5.12
1472 1577 2.125512 GCTCAAGGCCATCGTCGT 60.126 61.111 5.01 0.00 34.27 4.34
1473 1578 2.456119 GCTCAAGGCCATCGTCGTG 61.456 63.158 5.01 0.00 34.27 4.35
1474 1579 1.811266 CTCAAGGCCATCGTCGTGG 60.811 63.158 5.01 8.85 42.35 4.94
1475 1580 2.225791 CTCAAGGCCATCGTCGTGGA 62.226 60.000 5.01 0.00 42.02 4.02
1476 1581 1.811266 CAAGGCCATCGTCGTGGAG 60.811 63.158 5.01 1.78 42.02 3.86
1477 1582 3.665675 AAGGCCATCGTCGTGGAGC 62.666 63.158 5.01 4.82 42.02 4.70
1478 1583 4.148825 GGCCATCGTCGTGGAGCT 62.149 66.667 15.29 0.00 42.02 4.09
1479 1584 2.583593 GCCATCGTCGTGGAGCTC 60.584 66.667 4.71 4.71 42.02 4.09
1480 1585 2.885113 CCATCGTCGTGGAGCTCA 59.115 61.111 17.19 0.00 42.02 4.26
1481 1586 1.215382 CCATCGTCGTGGAGCTCAA 59.785 57.895 17.19 0.00 42.02 3.02
1482 1587 1.078759 CCATCGTCGTGGAGCTCAAC 61.079 60.000 17.19 14.34 42.02 3.18
1483 1588 1.078759 CATCGTCGTGGAGCTCAACC 61.079 60.000 15.83 1.51 0.00 3.77
1484 1589 1.532604 ATCGTCGTGGAGCTCAACCA 61.533 55.000 15.83 0.00 34.84 3.67
1485 1590 1.734477 CGTCGTGGAGCTCAACCAG 60.734 63.158 15.83 2.69 38.14 4.00
1493 1598 3.286751 GCTCAACCAGCGCAACCA 61.287 61.111 11.47 0.00 38.76 3.67
1494 1599 2.949106 CTCAACCAGCGCAACCAG 59.051 61.111 11.47 0.00 0.00 4.00
1495 1600 3.259425 CTCAACCAGCGCAACCAGC 62.259 63.158 11.47 0.00 40.87 4.85
1496 1601 3.594775 CAACCAGCGCAACCAGCA 61.595 61.111 11.47 0.00 46.13 4.41
1497 1602 3.289834 AACCAGCGCAACCAGCAG 61.290 61.111 11.47 0.00 46.13 4.24
1500 1605 4.400109 CAGCGCAACCAGCAGCAG 62.400 66.667 11.47 0.00 46.13 4.24
1503 1608 4.400109 CGCAACCAGCAGCAGCAG 62.400 66.667 3.17 0.00 46.13 4.24
1504 1609 3.292936 GCAACCAGCAGCAGCAGT 61.293 61.111 3.17 0.00 45.49 4.40
1505 1610 1.968017 GCAACCAGCAGCAGCAGTA 60.968 57.895 3.17 0.00 45.49 2.74
1506 1611 1.871772 CAACCAGCAGCAGCAGTAC 59.128 57.895 3.17 0.00 45.49 2.73
1507 1612 0.886043 CAACCAGCAGCAGCAGTACA 60.886 55.000 3.17 0.00 45.49 2.90
1508 1613 0.179020 AACCAGCAGCAGCAGTACAA 60.179 50.000 3.17 0.00 45.49 2.41
1509 1614 0.886490 ACCAGCAGCAGCAGTACAAC 60.886 55.000 3.17 0.00 45.49 3.32
1510 1615 1.494628 CAGCAGCAGCAGTACAACG 59.505 57.895 3.17 0.00 45.49 4.10
1511 1616 1.069765 AGCAGCAGCAGTACAACGT 59.930 52.632 3.17 0.00 45.49 3.99
1512 1617 0.946221 AGCAGCAGCAGTACAACGTC 60.946 55.000 3.17 0.00 45.49 4.34
1513 1618 0.946221 GCAGCAGCAGTACAACGTCT 60.946 55.000 0.00 0.00 41.58 4.18
1514 1619 1.063806 CAGCAGCAGTACAACGTCTC 58.936 55.000 0.00 0.00 0.00 3.36
1515 1620 0.038159 AGCAGCAGTACAACGTCTCC 60.038 55.000 0.00 0.00 0.00 3.71
1516 1621 1.344942 GCAGCAGTACAACGTCTCCG 61.345 60.000 0.00 0.00 40.83 4.63
1517 1622 1.080705 AGCAGTACAACGTCTCCGC 60.081 57.895 0.00 0.00 37.70 5.54
1518 1623 2.092882 GCAGTACAACGTCTCCGCC 61.093 63.158 0.00 0.00 37.70 6.13
1519 1624 1.800315 CAGTACAACGTCTCCGCCG 60.800 63.158 0.00 0.00 37.70 6.46
1520 1625 3.177249 GTACAACGTCTCCGCCGC 61.177 66.667 0.00 0.00 37.70 6.53
1521 1626 3.367743 TACAACGTCTCCGCCGCT 61.368 61.111 0.00 0.00 37.70 5.52
1522 1627 2.039974 TACAACGTCTCCGCCGCTA 61.040 57.895 0.00 0.00 37.70 4.26
1523 1628 2.257286 TACAACGTCTCCGCCGCTAC 62.257 60.000 0.00 0.00 37.70 3.58
1524 1629 4.125695 AACGTCTCCGCCGCTACC 62.126 66.667 0.00 0.00 37.70 3.18
1531 1636 3.973516 CCGCCGCTACCGCAGATA 61.974 66.667 0.00 0.00 35.30 1.98
1532 1637 2.429236 CGCCGCTACCGCAGATAG 60.429 66.667 0.00 0.00 35.30 2.08
1533 1638 2.735100 GCCGCTACCGCAGATAGC 60.735 66.667 1.65 1.65 40.87 2.97
1534 1639 2.049063 CCGCTACCGCAGATAGCC 60.049 66.667 5.54 0.00 41.38 3.93
1535 1640 2.728180 CGCTACCGCAGATAGCCA 59.272 61.111 5.54 0.00 41.38 4.75
1536 1641 1.661821 CGCTACCGCAGATAGCCAC 60.662 63.158 5.54 0.00 41.38 5.01
1537 1642 1.301009 GCTACCGCAGATAGCCACC 60.301 63.158 0.43 0.00 41.38 4.61
1538 1643 2.028125 GCTACCGCAGATAGCCACCA 62.028 60.000 0.43 0.00 41.38 4.17
1539 1644 0.249489 CTACCGCAGATAGCCACCAC 60.249 60.000 0.00 0.00 41.38 4.16
1540 1645 2.011741 TACCGCAGATAGCCACCACG 62.012 60.000 0.00 0.00 41.38 4.94
1541 1646 3.264897 CGCAGATAGCCACCACGC 61.265 66.667 0.00 0.00 41.38 5.34
1542 1647 2.187946 GCAGATAGCCACCACGCT 59.812 61.111 0.00 0.00 43.09 5.07
1543 1648 2.176273 GCAGATAGCCACCACGCTG 61.176 63.158 0.00 0.00 40.08 5.18
1544 1649 2.176273 CAGATAGCCACCACGCTGC 61.176 63.158 0.00 0.00 40.08 5.25
1545 1650 2.897350 GATAGCCACCACGCTGCC 60.897 66.667 0.00 0.00 40.08 4.85
1546 1651 4.838152 ATAGCCACCACGCTGCCG 62.838 66.667 0.00 0.00 40.08 5.69
1637 1742 4.148825 GCAGGACATCGAGCGGGT 62.149 66.667 0.00 0.00 0.00 5.28
1658 1763 1.285578 GAAGAGACGAAGCATCTGGC 58.714 55.000 0.00 0.00 45.30 4.85
1660 1765 1.880340 GAGACGAAGCATCTGGCCG 60.880 63.158 0.00 0.00 46.50 6.13
1662 1767 1.227380 GACGAAGCATCTGGCCGAT 60.227 57.895 0.00 0.60 46.50 4.18
1673 1778 4.225497 GGCCGATCTGGTCAAAGG 57.775 61.111 3.73 0.00 44.04 3.11
1674 1779 2.115291 GGCCGATCTGGTCAAAGGC 61.115 63.158 3.73 0.00 44.04 4.35
1675 1780 2.464459 GCCGATCTGGTCAAAGGCG 61.464 63.158 5.66 0.00 41.21 5.52
1676 1781 1.218047 CCGATCTGGTCAAAGGCGA 59.782 57.895 0.00 0.00 0.00 5.54
1679 1787 1.079127 ATCTGGTCAAAGGCGACGG 60.079 57.895 0.00 0.00 36.73 4.79
1757 1865 0.973632 ATGCTGTACAACGACAGGGA 59.026 50.000 0.00 0.00 45.85 4.20
1759 1867 0.317479 GCTGTACAACGACAGGGACT 59.683 55.000 0.00 0.00 45.85 3.85
1798 1906 4.980805 GCGCCTGGTTCACCGTGA 62.981 66.667 0.00 0.00 39.43 4.35
1825 1933 1.803519 CTTGAGAGCACCGACGAGC 60.804 63.158 0.00 0.00 0.00 5.03
1859 1967 2.258591 GAAGCAGCTCGTCGTGGA 59.741 61.111 0.00 0.00 0.00 4.02
1894 2002 3.626924 GCACCGTCCAGGAGTGGT 61.627 66.667 7.41 7.41 45.28 4.16
1901 2009 2.224159 TCCAGGAGTGGTTGGAGGC 61.224 63.158 0.00 0.00 45.28 4.70
1905 2013 1.376037 GGAGTGGTTGGAGGCGAAG 60.376 63.158 0.00 0.00 0.00 3.79
1941 2049 4.034258 GACGACGTGTCCTCGCCA 62.034 66.667 4.58 0.00 42.04 5.69
1953 2061 1.760086 CTCGCCAGAGGAGTGGGAT 60.760 63.158 0.00 0.00 40.75 3.85
1961 2069 3.514706 CCAGAGGAGTGGGATCTCATATG 59.485 52.174 0.00 0.00 37.26 1.78
2022 2130 2.879462 GTCATCGTGACGACGGGC 60.879 66.667 10.91 3.17 46.11 6.13
2023 2131 3.366915 TCATCGTGACGACGGGCA 61.367 61.111 10.91 0.00 46.11 5.36
2026 2134 3.338126 ATCGTGACGACGGGCAGAC 62.338 63.158 10.91 0.00 46.11 3.51
2034 2142 4.003788 ACGGGCAGACGTGAAGGG 62.004 66.667 0.00 0.00 46.64 3.95
2035 2143 4.003788 CGGGCAGACGTGAAGGGT 62.004 66.667 0.00 0.00 0.00 4.34
2036 2144 2.358737 GGGCAGACGTGAAGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
2037 2145 2.426023 GGCAGACGTGAAGGGTGT 59.574 61.111 0.00 0.00 0.00 4.16
2038 2146 1.961277 GGCAGACGTGAAGGGTGTG 60.961 63.158 0.00 0.00 0.00 3.82
2039 2147 1.227556 GCAGACGTGAAGGGTGTGT 60.228 57.895 0.00 0.00 31.83 3.72
2040 2148 0.032952 GCAGACGTGAAGGGTGTGTA 59.967 55.000 0.00 0.00 31.83 2.90
2041 2149 1.779569 CAGACGTGAAGGGTGTGTAC 58.220 55.000 0.00 0.00 0.00 2.90
2042 2150 0.313043 AGACGTGAAGGGTGTGTACG 59.687 55.000 0.00 0.00 40.30 3.67
2043 2151 0.311790 GACGTGAAGGGTGTGTACGA 59.688 55.000 0.00 0.00 38.08 3.43
2044 2152 0.313043 ACGTGAAGGGTGTGTACGAG 59.687 55.000 0.00 0.00 38.08 4.18
2045 2153 1.007336 CGTGAAGGGTGTGTACGAGC 61.007 60.000 0.00 0.00 36.94 5.03
2046 2154 0.317479 GTGAAGGGTGTGTACGAGCT 59.683 55.000 0.00 0.00 0.00 4.09
2047 2155 0.601558 TGAAGGGTGTGTACGAGCTC 59.398 55.000 2.73 2.73 0.00 4.09
2048 2156 0.601558 GAAGGGTGTGTACGAGCTCA 59.398 55.000 15.40 0.00 0.00 4.26
2049 2157 1.000506 GAAGGGTGTGTACGAGCTCAA 59.999 52.381 15.40 0.00 0.00 3.02
2050 2158 0.603569 AGGGTGTGTACGAGCTCAAG 59.396 55.000 15.40 0.13 0.00 3.02
2051 2159 1.014564 GGGTGTGTACGAGCTCAAGC 61.015 60.000 15.40 2.98 42.49 4.01
2052 2160 1.014564 GGTGTGTACGAGCTCAAGCC 61.015 60.000 15.40 1.84 43.38 4.35
2053 2161 0.038159 GTGTGTACGAGCTCAAGCCT 60.038 55.000 15.40 0.00 43.38 4.58
2054 2162 0.243907 TGTGTACGAGCTCAAGCCTC 59.756 55.000 15.40 0.00 43.38 4.70
2055 2163 0.528470 GTGTACGAGCTCAAGCCTCT 59.472 55.000 15.40 0.00 43.38 3.69
2056 2164 1.743958 GTGTACGAGCTCAAGCCTCTA 59.256 52.381 15.40 0.00 43.38 2.43
2057 2165 2.017782 TGTACGAGCTCAAGCCTCTAG 58.982 52.381 15.40 0.00 43.38 2.43
2058 2166 2.290464 GTACGAGCTCAAGCCTCTAGA 58.710 52.381 15.40 0.00 43.38 2.43
2059 2167 2.065899 ACGAGCTCAAGCCTCTAGAT 57.934 50.000 15.40 0.00 43.38 1.98
2060 2168 1.680735 ACGAGCTCAAGCCTCTAGATG 59.319 52.381 15.40 0.00 43.38 2.90
2061 2169 1.952990 CGAGCTCAAGCCTCTAGATGA 59.047 52.381 15.40 0.00 43.38 2.92
2062 2170 2.557924 CGAGCTCAAGCCTCTAGATGAT 59.442 50.000 15.40 0.00 43.38 2.45
2063 2171 3.755905 CGAGCTCAAGCCTCTAGATGATA 59.244 47.826 15.40 0.00 43.38 2.15
2064 2172 4.217334 CGAGCTCAAGCCTCTAGATGATAA 59.783 45.833 15.40 0.00 43.38 1.75
2065 2173 5.619757 CGAGCTCAAGCCTCTAGATGATAAG 60.620 48.000 15.40 0.00 43.38 1.73
2066 2174 4.527816 AGCTCAAGCCTCTAGATGATAAGG 59.472 45.833 0.00 0.00 43.38 2.69
2067 2175 4.526262 GCTCAAGCCTCTAGATGATAAGGA 59.474 45.833 0.00 0.00 34.31 3.36
2068 2176 5.336690 GCTCAAGCCTCTAGATGATAAGGAG 60.337 48.000 0.00 2.96 34.31 3.69
2069 2177 5.083122 TCAAGCCTCTAGATGATAAGGAGG 58.917 45.833 0.00 0.00 44.41 4.30
2070 2178 4.059773 AGCCTCTAGATGATAAGGAGGG 57.940 50.000 8.99 0.00 42.54 4.30
2071 2179 2.499693 GCCTCTAGATGATAAGGAGGGC 59.500 54.545 8.99 0.00 42.54 5.19
2072 2180 3.103742 CCTCTAGATGATAAGGAGGGCC 58.896 54.545 0.00 0.00 39.67 5.80
2073 2181 2.757868 CTCTAGATGATAAGGAGGGCCG 59.242 54.545 0.00 0.00 39.96 6.13
2074 2182 1.827969 CTAGATGATAAGGAGGGCCGG 59.172 57.143 0.00 0.00 39.96 6.13
2075 2183 0.191064 AGATGATAAGGAGGGCCGGA 59.809 55.000 5.05 0.00 39.96 5.14
2076 2184 1.056660 GATGATAAGGAGGGCCGGAA 58.943 55.000 5.05 0.00 39.96 4.30
2077 2185 1.420138 GATGATAAGGAGGGCCGGAAA 59.580 52.381 5.05 0.00 39.96 3.13
2078 2186 0.544697 TGATAAGGAGGGCCGGAAAC 59.455 55.000 5.05 0.00 39.96 2.78
2079 2187 0.837940 GATAAGGAGGGCCGGAAACT 59.162 55.000 5.05 0.00 39.96 2.66
2080 2188 0.546598 ATAAGGAGGGCCGGAAACTG 59.453 55.000 5.05 0.00 39.96 3.16
2081 2189 2.193087 TAAGGAGGGCCGGAAACTGC 62.193 60.000 5.05 4.53 39.96 4.40
2082 2190 4.035102 GGAGGGCCGGAAACTGCT 62.035 66.667 5.05 0.00 40.83 4.24
2083 2191 2.436824 GAGGGCCGGAAACTGCTC 60.437 66.667 5.05 0.00 42.11 4.26
2085 2193 2.987125 GGGCCGGAAACTGCTCTA 59.013 61.111 5.05 0.00 38.15 2.43
2086 2194 1.527370 GGGCCGGAAACTGCTCTAT 59.473 57.895 5.05 0.00 38.15 1.98
2087 2195 0.533085 GGGCCGGAAACTGCTCTATC 60.533 60.000 5.05 0.00 38.15 2.08
2088 2196 0.178068 GGCCGGAAACTGCTCTATCA 59.822 55.000 5.05 0.00 40.83 2.15
2089 2197 1.406887 GGCCGGAAACTGCTCTATCAA 60.407 52.381 5.05 0.00 40.83 2.57
2090 2198 2.356135 GCCGGAAACTGCTCTATCAAA 58.644 47.619 5.05 0.00 37.61 2.69
2091 2199 2.747446 GCCGGAAACTGCTCTATCAAAA 59.253 45.455 5.05 0.00 37.61 2.44
2092 2200 3.181506 GCCGGAAACTGCTCTATCAAAAG 60.182 47.826 5.05 0.00 37.61 2.27
2093 2201 3.375299 CCGGAAACTGCTCTATCAAAAGG 59.625 47.826 0.00 0.00 0.00 3.11
2094 2202 4.003648 CGGAAACTGCTCTATCAAAAGGT 58.996 43.478 0.00 0.00 0.00 3.50
2095 2203 5.175859 CGGAAACTGCTCTATCAAAAGGTA 58.824 41.667 0.00 0.00 0.00 3.08
2096 2204 5.063564 CGGAAACTGCTCTATCAAAAGGTAC 59.936 44.000 0.00 0.00 0.00 3.34
2097 2205 5.938125 GGAAACTGCTCTATCAAAAGGTACA 59.062 40.000 0.00 0.00 0.00 2.90
2098 2206 6.430000 GGAAACTGCTCTATCAAAAGGTACAA 59.570 38.462 0.00 0.00 0.00 2.41
2099 2207 7.121315 GGAAACTGCTCTATCAAAAGGTACAAT 59.879 37.037 0.00 0.00 0.00 2.71
2100 2208 9.162764 GAAACTGCTCTATCAAAAGGTACAATA 57.837 33.333 0.00 0.00 0.00 1.90
2101 2209 8.494016 AACTGCTCTATCAAAAGGTACAATAC 57.506 34.615 0.00 0.00 0.00 1.89
2102 2210 7.852263 ACTGCTCTATCAAAAGGTACAATACT 58.148 34.615 0.00 0.00 0.00 2.12
2103 2211 8.978472 ACTGCTCTATCAAAAGGTACAATACTA 58.022 33.333 0.00 0.00 0.00 1.82
2104 2212 9.250624 CTGCTCTATCAAAAGGTACAATACTAC 57.749 37.037 0.00 0.00 0.00 2.73
2105 2213 8.978472 TGCTCTATCAAAAGGTACAATACTACT 58.022 33.333 0.00 0.00 0.00 2.57
2106 2214 9.465985 GCTCTATCAAAAGGTACAATACTACTC 57.534 37.037 0.00 0.00 0.00 2.59
2107 2215 9.968870 CTCTATCAAAAGGTACAATACTACTCC 57.031 37.037 0.00 0.00 0.00 3.85
2108 2216 8.921205 TCTATCAAAAGGTACAATACTACTCCC 58.079 37.037 0.00 0.00 0.00 4.30
2109 2217 7.750947 ATCAAAAGGTACAATACTACTCCCT 57.249 36.000 0.00 0.00 0.00 4.20
2110 2218 7.179076 TCAAAAGGTACAATACTACTCCCTC 57.821 40.000 0.00 0.00 0.00 4.30
2111 2219 6.155737 TCAAAAGGTACAATACTACTCCCTCC 59.844 42.308 0.00 0.00 0.00 4.30
2112 2220 4.894252 AGGTACAATACTACTCCCTCCA 57.106 45.455 0.00 0.00 0.00 3.86
2113 2221 5.420215 AGGTACAATACTACTCCCTCCAT 57.580 43.478 0.00 0.00 0.00 3.41
2114 2222 6.541264 AGGTACAATACTACTCCCTCCATA 57.459 41.667 0.00 0.00 0.00 2.74
2115 2223 6.930475 AGGTACAATACTACTCCCTCCATAA 58.070 40.000 0.00 0.00 0.00 1.90
2116 2224 7.367828 AGGTACAATACTACTCCCTCCATAAA 58.632 38.462 0.00 0.00 0.00 1.40
2117 2225 7.847848 AGGTACAATACTACTCCCTCCATAAAA 59.152 37.037 0.00 0.00 0.00 1.52
2118 2226 8.488668 GGTACAATACTACTCCCTCCATAAAAA 58.511 37.037 0.00 0.00 0.00 1.94
2159 2267 7.687941 AGATCACTAATTTGTTTACAGTGGG 57.312 36.000 0.00 0.00 0.00 4.61
2160 2268 7.458397 AGATCACTAATTTGTTTACAGTGGGA 58.542 34.615 0.00 0.00 0.00 4.37
2161 2269 7.607991 AGATCACTAATTTGTTTACAGTGGGAG 59.392 37.037 0.00 0.00 0.00 4.30
2162 2270 6.597562 TCACTAATTTGTTTACAGTGGGAGT 58.402 36.000 0.00 0.00 0.00 3.85
2163 2271 7.737869 TCACTAATTTGTTTACAGTGGGAGTA 58.262 34.615 0.00 0.00 0.00 2.59
2164 2272 7.658575 TCACTAATTTGTTTACAGTGGGAGTAC 59.341 37.037 0.00 0.00 0.00 2.73
2165 2273 7.660208 CACTAATTTGTTTACAGTGGGAGTACT 59.340 37.037 0.00 0.00 0.00 2.73
2166 2274 8.215736 ACTAATTTGTTTACAGTGGGAGTACTT 58.784 33.333 0.00 0.00 0.00 2.24
2167 2275 7.891498 AATTTGTTTACAGTGGGAGTACTTT 57.109 32.000 0.00 0.00 0.00 2.66
2168 2276 7.891498 ATTTGTTTACAGTGGGAGTACTTTT 57.109 32.000 0.00 0.00 0.00 2.27
2169 2277 6.687081 TTGTTTACAGTGGGAGTACTTTTG 57.313 37.500 0.00 0.00 0.00 2.44
2170 2278 5.747342 TGTTTACAGTGGGAGTACTTTTGT 58.253 37.500 0.00 0.78 0.00 2.83
2171 2279 6.181908 TGTTTACAGTGGGAGTACTTTTGTT 58.818 36.000 0.00 0.00 0.00 2.83
2172 2280 6.660094 TGTTTACAGTGGGAGTACTTTTGTTT 59.340 34.615 0.00 0.00 0.00 2.83
2173 2281 6.687081 TTACAGTGGGAGTACTTTTGTTTG 57.313 37.500 0.00 0.00 0.00 2.93
2174 2282 3.380320 ACAGTGGGAGTACTTTTGTTTGC 59.620 43.478 0.00 0.00 0.00 3.68
2175 2283 3.380004 CAGTGGGAGTACTTTTGTTTGCA 59.620 43.478 0.00 0.00 0.00 4.08
2176 2284 3.380320 AGTGGGAGTACTTTTGTTTGCAC 59.620 43.478 0.00 0.00 0.00 4.57
2177 2285 3.380320 GTGGGAGTACTTTTGTTTGCACT 59.620 43.478 0.00 0.00 0.00 4.40
2178 2286 4.577283 GTGGGAGTACTTTTGTTTGCACTA 59.423 41.667 0.00 0.00 0.00 2.74
2179 2287 4.819630 TGGGAGTACTTTTGTTTGCACTAG 59.180 41.667 0.00 0.00 0.00 2.57
2180 2288 5.061179 GGGAGTACTTTTGTTTGCACTAGA 58.939 41.667 0.00 0.00 0.00 2.43
2181 2289 5.049612 GGGAGTACTTTTGTTTGCACTAGAC 60.050 44.000 0.00 0.00 0.00 2.59
2182 2290 5.758784 GGAGTACTTTTGTTTGCACTAGACT 59.241 40.000 0.00 0.00 0.00 3.24
2183 2291 6.927381 GGAGTACTTTTGTTTGCACTAGACTA 59.073 38.462 0.00 0.00 0.00 2.59
2184 2292 7.116519 GGAGTACTTTTGTTTGCACTAGACTAG 59.883 40.741 8.00 8.00 0.00 2.57
2185 2293 7.723324 AGTACTTTTGTTTGCACTAGACTAGA 58.277 34.615 16.55 0.00 0.00 2.43
2186 2294 8.368668 AGTACTTTTGTTTGCACTAGACTAGAT 58.631 33.333 16.55 0.00 0.00 1.98
2187 2295 7.426929 ACTTTTGTTTGCACTAGACTAGATG 57.573 36.000 16.55 11.13 0.00 2.90
2188 2296 5.862924 TTTGTTTGCACTAGACTAGATGC 57.137 39.130 16.55 19.24 35.13 3.91
2189 2297 4.535526 TGTTTGCACTAGACTAGATGCA 57.464 40.909 23.99 23.99 39.37 3.96
2190 2298 4.245660 TGTTTGCACTAGACTAGATGCAC 58.754 43.478 25.97 19.75 40.15 4.57
2191 2299 4.245660 GTTTGCACTAGACTAGATGCACA 58.754 43.478 25.97 20.87 40.15 4.57
2192 2300 3.790152 TGCACTAGACTAGATGCACAG 57.210 47.619 23.99 0.67 37.66 3.66
2193 2301 2.159184 TGCACTAGACTAGATGCACAGC 60.159 50.000 23.99 13.76 37.66 4.40
2194 2302 2.100584 GCACTAGACTAGATGCACAGCT 59.899 50.000 21.91 0.00 34.87 4.24
2195 2303 3.430098 GCACTAGACTAGATGCACAGCTT 60.430 47.826 21.91 0.00 34.87 3.74
2196 2304 4.111198 CACTAGACTAGATGCACAGCTTG 58.889 47.826 16.55 0.00 0.00 4.01
2197 2305 3.766591 ACTAGACTAGATGCACAGCTTGT 59.233 43.478 16.55 2.73 35.67 3.16
2198 2306 3.692257 AGACTAGATGCACAGCTTGTT 57.308 42.857 4.60 0.00 33.35 2.83
2199 2307 4.808414 AGACTAGATGCACAGCTTGTTA 57.192 40.909 4.60 0.00 33.35 2.41
2200 2308 5.152623 AGACTAGATGCACAGCTTGTTAA 57.847 39.130 4.60 0.00 33.35 2.01
2201 2309 5.551233 AGACTAGATGCACAGCTTGTTAAA 58.449 37.500 4.60 0.00 33.35 1.52
2202 2310 5.997746 AGACTAGATGCACAGCTTGTTAAAA 59.002 36.000 4.60 0.00 33.35 1.52
2203 2311 6.656693 AGACTAGATGCACAGCTTGTTAAAAT 59.343 34.615 4.60 0.00 33.35 1.82
2204 2312 7.824289 AGACTAGATGCACAGCTTGTTAAAATA 59.176 33.333 4.60 0.00 33.35 1.40
2205 2313 8.511604 ACTAGATGCACAGCTTGTTAAAATAT 57.488 30.769 0.00 0.00 29.16 1.28
2206 2314 8.400947 ACTAGATGCACAGCTTGTTAAAATATG 58.599 33.333 0.00 0.00 29.16 1.78
2207 2315 7.161773 AGATGCACAGCTTGTTAAAATATGT 57.838 32.000 0.00 0.00 0.00 2.29
2208 2316 7.031372 AGATGCACAGCTTGTTAAAATATGTG 58.969 34.615 0.00 0.00 39.55 3.21
2209 2317 6.083098 TGCACAGCTTGTTAAAATATGTGT 57.917 33.333 0.00 0.00 38.95 3.72
2210 2318 5.919707 TGCACAGCTTGTTAAAATATGTGTG 59.080 36.000 0.00 0.00 38.95 3.82
2211 2319 6.148948 GCACAGCTTGTTAAAATATGTGTGA 58.851 36.000 0.00 0.00 38.95 3.58
2212 2320 6.640499 GCACAGCTTGTTAAAATATGTGTGAA 59.360 34.615 0.00 0.00 38.95 3.18
2213 2321 7.329226 GCACAGCTTGTTAAAATATGTGTGAAT 59.671 33.333 0.00 0.00 38.95 2.57
2214 2322 9.838975 CACAGCTTGTTAAAATATGTGTGAATA 57.161 29.630 0.00 0.00 35.82 1.75
2256 2364 8.702163 AGGAACAAGTTTGTAAAATCAACTTG 57.298 30.769 18.11 18.11 41.31 3.16
2257 2365 7.763985 AGGAACAAGTTTGTAAAATCAACTTGG 59.236 33.333 21.78 9.19 41.31 3.61
2258 2366 7.762159 GGAACAAGTTTGTAAAATCAACTTGGA 59.238 33.333 21.78 0.00 41.31 3.53
2259 2367 9.145865 GAACAAGTTTGTAAAATCAACTTGGAA 57.854 29.630 21.78 0.00 41.31 3.53
2260 2368 9.665719 AACAAGTTTGTAAAATCAACTTGGAAT 57.334 25.926 21.78 9.73 41.31 3.01
2261 2369 9.665719 ACAAGTTTGTAAAATCAACTTGGAATT 57.334 25.926 21.78 4.66 40.16 2.17
2305 2413 7.730364 TTTTGCGACTAGATTTTCTCTTTCT 57.270 32.000 0.00 0.00 35.28 2.52
2306 2414 6.952935 TTGCGACTAGATTTTCTCTTTCTC 57.047 37.500 0.00 0.00 35.28 2.87
2307 2415 6.025749 TGCGACTAGATTTTCTCTTTCTCA 57.974 37.500 0.00 0.00 35.28 3.27
2308 2416 6.634805 TGCGACTAGATTTTCTCTTTCTCAT 58.365 36.000 0.00 0.00 35.28 2.90
2309 2417 6.754209 TGCGACTAGATTTTCTCTTTCTCATC 59.246 38.462 0.00 0.00 35.28 2.92
2310 2418 6.754209 GCGACTAGATTTTCTCTTTCTCATCA 59.246 38.462 0.00 0.00 35.28 3.07
2311 2419 7.276658 GCGACTAGATTTTCTCTTTCTCATCAA 59.723 37.037 0.00 0.00 35.28 2.57
2312 2420 9.311916 CGACTAGATTTTCTCTTTCTCATCAAT 57.688 33.333 0.00 0.00 35.28 2.57
2323 2431 8.616942 TCTCTTTCTCATCAATCTACTAAGACG 58.383 37.037 0.00 0.00 33.57 4.18
2324 2432 8.507524 TCTTTCTCATCAATCTACTAAGACGA 57.492 34.615 0.00 0.00 33.57 4.20
2325 2433 8.399425 TCTTTCTCATCAATCTACTAAGACGAC 58.601 37.037 0.00 0.00 33.57 4.34
2326 2434 7.625828 TTCTCATCAATCTACTAAGACGACA 57.374 36.000 0.00 0.00 33.57 4.35
2327 2435 7.017498 TCTCATCAATCTACTAAGACGACAC 57.983 40.000 0.00 0.00 33.57 3.67
2328 2436 6.598064 TCTCATCAATCTACTAAGACGACACA 59.402 38.462 0.00 0.00 33.57 3.72
2329 2437 7.120726 TCTCATCAATCTACTAAGACGACACAA 59.879 37.037 0.00 0.00 33.57 3.33
2330 2438 7.599171 TCATCAATCTACTAAGACGACACAAA 58.401 34.615 0.00 0.00 33.57 2.83
2331 2439 7.541091 TCATCAATCTACTAAGACGACACAAAC 59.459 37.037 0.00 0.00 33.57 2.93
2332 2440 6.154445 TCAATCTACTAAGACGACACAAACC 58.846 40.000 0.00 0.00 33.57 3.27
2333 2441 4.510038 TCTACTAAGACGACACAAACCC 57.490 45.455 0.00 0.00 0.00 4.11
2334 2442 4.147321 TCTACTAAGACGACACAAACCCT 58.853 43.478 0.00 0.00 0.00 4.34
2335 2443 3.832615 ACTAAGACGACACAAACCCTT 57.167 42.857 0.00 0.00 0.00 3.95
2336 2444 4.942761 ACTAAGACGACACAAACCCTTA 57.057 40.909 0.00 0.00 0.00 2.69
2337 2445 5.479124 ACTAAGACGACACAAACCCTTAT 57.521 39.130 0.00 0.00 0.00 1.73
2338 2446 6.594788 ACTAAGACGACACAAACCCTTATA 57.405 37.500 0.00 0.00 0.00 0.98
2339 2447 6.996509 ACTAAGACGACACAAACCCTTATAA 58.003 36.000 0.00 0.00 0.00 0.98
2340 2448 7.444299 ACTAAGACGACACAAACCCTTATAAA 58.556 34.615 0.00 0.00 0.00 1.40
2341 2449 6.796705 AAGACGACACAAACCCTTATAAAG 57.203 37.500 0.00 0.00 0.00 1.85
2342 2450 6.105397 AGACGACACAAACCCTTATAAAGA 57.895 37.500 0.00 0.00 0.00 2.52
2343 2451 6.708285 AGACGACACAAACCCTTATAAAGAT 58.292 36.000 0.00 0.00 0.00 2.40
2344 2452 7.166167 AGACGACACAAACCCTTATAAAGATT 58.834 34.615 0.00 0.00 0.00 2.40
2345 2453 7.664318 AGACGACACAAACCCTTATAAAGATTT 59.336 33.333 0.00 0.00 0.00 2.17
2346 2454 7.590279 ACGACACAAACCCTTATAAAGATTTG 58.410 34.615 0.08 0.08 34.10 2.32
2347 2455 7.229907 ACGACACAAACCCTTATAAAGATTTGT 59.770 33.333 1.28 1.28 40.04 2.83
2348 2456 8.079809 CGACACAAACCCTTATAAAGATTTGTT 58.920 33.333 4.10 0.00 37.99 2.83
2387 2495 9.283768 TCTGAAAAATAGTTCTATCAAGTTGCA 57.716 29.630 0.00 0.00 0.00 4.08
2388 2496 9.334693 CTGAAAAATAGTTCTATCAAGTTGCAC 57.665 33.333 0.00 0.00 0.00 4.57
2389 2497 8.845227 TGAAAAATAGTTCTATCAAGTTGCACA 58.155 29.630 0.00 0.00 0.00 4.57
2390 2498 9.846248 GAAAAATAGTTCTATCAAGTTGCACAT 57.154 29.630 0.00 0.00 0.00 3.21
2391 2499 9.846248 AAAAATAGTTCTATCAAGTTGCACATC 57.154 29.630 0.00 0.00 0.00 3.06
2392 2500 8.565896 AAATAGTTCTATCAAGTTGCACATCA 57.434 30.769 0.00 0.00 0.00 3.07
2393 2501 8.743085 AATAGTTCTATCAAGTTGCACATCAT 57.257 30.769 0.00 0.00 0.00 2.45
2394 2502 6.432607 AGTTCTATCAAGTTGCACATCATG 57.567 37.500 0.00 0.00 0.00 3.07
2395 2503 6.175471 AGTTCTATCAAGTTGCACATCATGA 58.825 36.000 0.00 0.00 0.00 3.07
2396 2504 6.656270 AGTTCTATCAAGTTGCACATCATGAA 59.344 34.615 0.00 0.00 0.00 2.57
2397 2505 6.673154 TCTATCAAGTTGCACATCATGAAG 57.327 37.500 0.00 0.00 0.00 3.02
2398 2506 6.175471 TCTATCAAGTTGCACATCATGAAGT 58.825 36.000 0.00 0.00 0.00 3.01
2399 2507 4.754372 TCAAGTTGCACATCATGAAGTC 57.246 40.909 0.00 0.00 0.00 3.01
2400 2508 3.503363 TCAAGTTGCACATCATGAAGTCC 59.497 43.478 0.00 0.00 0.00 3.85
2401 2509 3.430042 AGTTGCACATCATGAAGTCCT 57.570 42.857 0.00 0.00 0.00 3.85
2402 2510 3.759581 AGTTGCACATCATGAAGTCCTT 58.240 40.909 0.00 0.00 0.00 3.36
2403 2511 4.147321 AGTTGCACATCATGAAGTCCTTT 58.853 39.130 0.00 0.00 0.00 3.11
2404 2512 5.316167 AGTTGCACATCATGAAGTCCTTTA 58.684 37.500 0.00 0.00 0.00 1.85
2405 2513 5.769662 AGTTGCACATCATGAAGTCCTTTAA 59.230 36.000 0.00 0.00 0.00 1.52
2406 2514 6.265196 AGTTGCACATCATGAAGTCCTTTAAA 59.735 34.615 0.00 0.00 0.00 1.52
2407 2515 6.647334 TGCACATCATGAAGTCCTTTAAAA 57.353 33.333 0.00 0.00 0.00 1.52
2408 2516 7.048629 TGCACATCATGAAGTCCTTTAAAAA 57.951 32.000 0.00 0.00 0.00 1.94
2428 2536 4.325028 AAAAGTTGCACATCATGAAGCA 57.675 36.364 14.49 14.49 32.31 3.91
2429 2537 3.570926 AAGTTGCACATCATGAAGCAG 57.429 42.857 16.83 4.31 34.68 4.24
2430 2538 2.786777 AGTTGCACATCATGAAGCAGA 58.213 42.857 16.83 8.84 34.68 4.26
2431 2539 3.353557 AGTTGCACATCATGAAGCAGAT 58.646 40.909 16.83 9.73 34.68 2.90
2432 2540 4.520179 AGTTGCACATCATGAAGCAGATA 58.480 39.130 16.83 4.60 34.68 1.98
2433 2541 4.334759 AGTTGCACATCATGAAGCAGATAC 59.665 41.667 16.83 13.63 34.68 2.24
2434 2542 3.876341 TGCACATCATGAAGCAGATACA 58.124 40.909 14.49 0.00 31.12 2.29
2435 2543 4.263435 TGCACATCATGAAGCAGATACAA 58.737 39.130 14.49 0.00 31.12 2.41
2436 2544 4.701171 TGCACATCATGAAGCAGATACAAA 59.299 37.500 14.49 0.00 31.12 2.83
2437 2545 5.183522 TGCACATCATGAAGCAGATACAAAA 59.816 36.000 14.49 0.00 31.12 2.44
2438 2546 6.094719 GCACATCATGAAGCAGATACAAAAA 58.905 36.000 0.00 0.00 0.00 1.94
2439 2547 6.755141 GCACATCATGAAGCAGATACAAAAAT 59.245 34.615 0.00 0.00 0.00 1.82
2440 2548 7.916977 GCACATCATGAAGCAGATACAAAAATA 59.083 33.333 0.00 0.00 0.00 1.40
2441 2549 9.961265 CACATCATGAAGCAGATACAAAAATAT 57.039 29.630 0.00 0.00 0.00 1.28
2489 2597 8.485976 AATCACTTTAGCTAGATTTCAGTCAC 57.514 34.615 0.00 0.00 0.00 3.67
2544 2652 4.219115 TGACCCTTGGATTGTGCTTTAAA 58.781 39.130 0.00 0.00 0.00 1.52
2626 2753 5.163754 CGATTGACACCTATTTTGGGTCTTC 60.164 44.000 0.00 0.00 34.44 2.87
2628 2755 3.325425 TGACACCTATTTTGGGTCTTCGA 59.675 43.478 0.00 0.00 34.44 3.71
2656 2783 0.670706 TGGTGCGTGCATGCTTTTTA 59.329 45.000 29.83 8.15 35.36 1.52
2676 2804 7.475771 TTTTATCCATGTGTTTGCTTTTGTC 57.524 32.000 0.00 0.00 0.00 3.18
2759 2903 2.118228 TGTTGAGTGCGTGAAAATGC 57.882 45.000 0.00 0.00 0.00 3.56
2771 2923 5.106357 TGCGTGAAAATGCATACACTACATT 60.106 36.000 20.84 1.26 35.90 2.71
2908 3080 9.430623 GGTAATACCAATGCTAATTGTTTTGTT 57.569 29.630 4.24 0.00 41.46 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.476254 TGTGTGATTTATCTTGTGCCAATGA 59.524 36.000 0.00 0.00 0.00 2.57
80 82 1.004758 ATCCTTGGCTAGAGGGGCA 59.995 57.895 0.00 0.00 39.99 5.36
105 107 3.190744 TGAAGAGCGTGAATAGTCGAACT 59.809 43.478 0.00 0.00 0.00 3.01
135 137 2.092103 TGGGTAACATCTATGGTTGGCC 60.092 50.000 0.00 0.00 39.74 5.36
137 139 4.199310 CACTGGGTAACATCTATGGTTGG 58.801 47.826 0.00 0.00 39.74 3.77
340 402 3.629438 ACCCAAAAACGGTTATTCGTG 57.371 42.857 0.00 0.00 43.07 4.35
377 439 2.842462 TGTGCGGGGACACTCAGT 60.842 61.111 0.00 0.00 41.30 3.41
383 445 4.572571 GTTGGGTGTGCGGGGACA 62.573 66.667 0.00 0.00 0.00 4.02
384 446 4.265056 AGTTGGGTGTGCGGGGAC 62.265 66.667 0.00 0.00 0.00 4.46
458 520 0.522180 TCTTCTTCGAGGAGTGCGAC 59.478 55.000 0.00 0.00 37.52 5.19
482 545 4.019051 AGCGATTTCATCATGGATGGGATA 60.019 41.667 6.39 0.00 40.15 2.59
519 582 0.041238 AGGTCGTCCCCTTCATCTGA 59.959 55.000 0.00 0.00 0.00 3.27
550 613 7.956420 ACAAGTCACGATAACATTTACTTGA 57.044 32.000 16.62 0.00 43.01 3.02
562 625 6.273071 CCAACTGATGATACAAGTCACGATA 58.727 40.000 0.00 0.00 0.00 2.92
564 627 4.494484 CCAACTGATGATACAAGTCACGA 58.506 43.478 0.00 0.00 0.00 4.35
638 720 1.544691 ACAGGTACGTGATGTGACTCC 59.455 52.381 21.70 0.00 0.00 3.85
642 724 4.703093 TGAGATTACAGGTACGTGATGTGA 59.297 41.667 21.70 4.58 0.00 3.58
692 774 1.134946 GAAATACACAGGTGCCATGGC 59.865 52.381 30.54 30.54 42.35 4.40
700 782 6.120220 GGCTATTAAGTGGAAATACACAGGT 58.880 40.000 0.00 0.00 43.72 4.00
702 784 6.238484 GCTGGCTATTAAGTGGAAATACACAG 60.238 42.308 0.00 0.00 43.72 3.66
711 793 5.308014 CATGTATGCTGGCTATTAAGTGGA 58.692 41.667 0.00 0.00 0.00 4.02
726 808 6.228273 AGTACATTTACGATGCATGTATGC 57.772 37.500 2.46 9.82 42.50 3.14
738 820 6.785633 CAGCGTGCATTTATAGTACATTTACG 59.214 38.462 0.00 0.00 32.93 3.18
756 849 2.127118 GTGATGTGTGCAGCGTGC 60.127 61.111 0.00 3.44 45.29 5.34
757 850 1.205820 CTGTGATGTGTGCAGCGTG 59.794 57.895 0.00 0.00 32.92 5.34
758 851 2.610694 GCTGTGATGTGTGCAGCGT 61.611 57.895 0.00 0.00 44.64 5.07
759 852 2.175078 GCTGTGATGTGTGCAGCG 59.825 61.111 0.00 0.00 44.64 5.18
843 936 5.458654 GGTGGTGGTACTATATAGGTGGAGA 60.459 48.000 14.25 0.00 0.00 3.71
844 937 4.771054 GGTGGTGGTACTATATAGGTGGAG 59.229 50.000 14.25 0.00 0.00 3.86
845 938 4.170449 TGGTGGTGGTACTATATAGGTGGA 59.830 45.833 14.25 0.00 0.00 4.02
846 939 4.282703 GTGGTGGTGGTACTATATAGGTGG 59.717 50.000 14.25 0.00 0.00 4.61
847 940 4.282703 GGTGGTGGTGGTACTATATAGGTG 59.717 50.000 14.25 0.00 0.00 4.00
848 941 4.078454 TGGTGGTGGTGGTACTATATAGGT 60.078 45.833 14.25 2.93 0.00 3.08
849 942 4.282703 GTGGTGGTGGTGGTACTATATAGG 59.717 50.000 14.25 0.00 0.00 2.57
850 943 4.282703 GGTGGTGGTGGTGGTACTATATAG 59.717 50.000 8.27 8.27 0.00 1.31
851 944 4.225573 GGTGGTGGTGGTGGTACTATATA 58.774 47.826 0.00 0.00 0.00 0.86
852 945 3.043418 GGTGGTGGTGGTGGTACTATAT 58.957 50.000 0.00 0.00 0.00 0.86
853 946 2.225573 TGGTGGTGGTGGTGGTACTATA 60.226 50.000 0.00 0.00 0.00 1.31
854 947 1.282382 GGTGGTGGTGGTGGTACTAT 58.718 55.000 0.00 0.00 0.00 2.12
855 948 0.105090 TGGTGGTGGTGGTGGTACTA 60.105 55.000 0.00 0.00 0.00 1.82
856 949 1.384783 TGGTGGTGGTGGTGGTACT 60.385 57.895 0.00 0.00 0.00 2.73
857 950 1.228033 GTGGTGGTGGTGGTGGTAC 60.228 63.158 0.00 0.00 0.00 3.34
858 951 2.453812 GGTGGTGGTGGTGGTGGTA 61.454 63.158 0.00 0.00 0.00 3.25
859 952 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
860 953 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
861 954 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
862 955 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
863 956 3.145473 ATGGTGGTGGTGGTGGTGG 62.145 63.158 0.00 0.00 0.00 4.61
864 957 1.603455 GATGGTGGTGGTGGTGGTG 60.603 63.158 0.00 0.00 0.00 4.17
865 958 2.840753 GGATGGTGGTGGTGGTGGT 61.841 63.158 0.00 0.00 0.00 4.16
866 959 2.035626 GGATGGTGGTGGTGGTGG 59.964 66.667 0.00 0.00 0.00 4.61
867 960 2.035626 GGGATGGTGGTGGTGGTG 59.964 66.667 0.00 0.00 0.00 4.17
868 961 3.264845 GGGGATGGTGGTGGTGGT 61.265 66.667 0.00 0.00 0.00 4.16
869 962 4.424711 CGGGGATGGTGGTGGTGG 62.425 72.222 0.00 0.00 0.00 4.61
870 963 4.424711 CCGGGGATGGTGGTGGTG 62.425 72.222 0.00 0.00 0.00 4.17
871 964 4.995058 ACCGGGGATGGTGGTGGT 62.995 66.667 6.32 0.00 41.85 4.16
872 965 3.638592 GAACCGGGGATGGTGGTGG 62.639 68.421 6.32 0.00 42.89 4.61
873 966 2.045340 GAACCGGGGATGGTGGTG 60.045 66.667 6.32 0.00 42.89 4.17
874 967 2.530661 TGAACCGGGGATGGTGGT 60.531 61.111 6.32 0.00 42.89 4.16
875 968 2.045340 GTGAACCGGGGATGGTGG 60.045 66.667 6.32 0.00 42.89 4.61
876 969 2.045340 GGTGAACCGGGGATGGTG 60.045 66.667 6.32 0.00 42.89 4.17
877 970 2.530661 TGGTGAACCGGGGATGGT 60.531 61.111 6.32 0.00 46.67 3.55
878 971 2.045340 GTGGTGAACCGGGGATGG 60.045 66.667 6.32 0.00 39.43 3.51
879 972 2.045340 GGTGGTGAACCGGGGATG 60.045 66.667 6.32 0.00 39.81 3.51
887 980 1.826487 GGTGGTGGTGGTGGTGAAC 60.826 63.158 0.00 0.00 0.00 3.18
888 981 2.309504 TGGTGGTGGTGGTGGTGAA 61.310 57.895 0.00 0.00 0.00 3.18
889 982 2.692741 TGGTGGTGGTGGTGGTGA 60.693 61.111 0.00 0.00 0.00 4.02
890 983 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
891 984 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
892 985 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
893 986 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
894 987 4.183858 CGTGGTGGTGGTGGTGGT 62.184 66.667 0.00 0.00 0.00 4.16
895 988 3.825160 CTCGTGGTGGTGGTGGTGG 62.825 68.421 0.00 0.00 0.00 4.61
896 989 2.280797 CTCGTGGTGGTGGTGGTG 60.281 66.667 0.00 0.00 0.00 4.17
897 990 3.556306 CCTCGTGGTGGTGGTGGT 61.556 66.667 0.00 0.00 0.00 4.16
899 992 4.248842 TGCCTCGTGGTGGTGGTG 62.249 66.667 5.26 0.00 35.27 4.17
900 993 4.250305 GTGCCTCGTGGTGGTGGT 62.250 66.667 5.26 0.00 35.27 4.16
911 1004 2.985512 CTAGATGCTGCCGGTGCCTC 62.986 65.000 16.68 15.81 36.33 4.70
912 1005 3.083349 TAGATGCTGCCGGTGCCT 61.083 61.111 16.68 8.72 36.33 4.75
913 1006 2.590007 CTAGATGCTGCCGGTGCC 60.590 66.667 16.68 4.84 36.33 5.01
914 1007 3.275338 GCTAGATGCTGCCGGTGC 61.275 66.667 13.41 13.41 38.95 5.01
927 1020 5.188327 TGTGCACTGCTAGTAATAGCTAG 57.812 43.478 21.63 18.07 43.20 3.42
934 1027 1.640428 GCGATGTGCACTGCTAGTAA 58.360 50.000 19.41 0.00 45.45 2.24
935 1028 0.525455 CGCGATGTGCACTGCTAGTA 60.525 55.000 19.41 0.00 46.97 1.82
936 1029 1.807165 CGCGATGTGCACTGCTAGT 60.807 57.895 19.41 0.00 46.97 2.57
937 1030 1.477826 CTCGCGATGTGCACTGCTAG 61.478 60.000 19.41 15.67 46.97 3.42
941 1034 3.113979 TGCTCGCGATGTGCACTG 61.114 61.111 19.41 9.10 46.97 3.66
944 1037 4.715892 TCGTGCTCGCGATGTGCA 62.716 61.111 16.47 16.47 46.97 4.57
960 1053 7.551262 TGTGAGAGTGAGATACTAGTTCTCTTC 59.449 40.741 23.59 20.88 40.53 2.87
961 1054 7.398829 TGTGAGAGTGAGATACTAGTTCTCTT 58.601 38.462 23.59 16.65 40.53 2.85
962 1055 6.953101 TGTGAGAGTGAGATACTAGTTCTCT 58.047 40.000 23.59 16.94 40.53 3.10
982 1075 2.091939 CCATCTCTCCCTCTCTCTGTGA 60.092 54.545 0.00 0.00 0.00 3.58
992 1085 1.456705 GTCGCCTCCATCTCTCCCT 60.457 63.158 0.00 0.00 0.00 4.20
1103 1202 1.623834 GGATGAAGTCCACCTCCCTCT 60.624 57.143 0.00 0.00 46.96 3.69
1115 1214 2.510238 GCTCGCTGCGGATGAAGT 60.510 61.111 23.03 0.00 0.00 3.01
1160 1259 4.803426 GCGTGGAGGAGGACTGCG 62.803 72.222 0.00 0.00 41.01 5.18
1243 1348 3.053849 GACAGTCCTCGAGGTCGCC 62.054 68.421 30.17 16.42 39.60 5.54
1367 1472 1.078759 CTGGTTGAGATCCACGACGC 61.079 60.000 0.00 0.00 0.00 5.19
1377 1482 1.597854 CTGGTTGCGCTGGTTGAGA 60.598 57.895 9.73 0.00 0.00 3.27
1393 1498 1.941476 GCGAAGACGTTGTACCGCTG 61.941 60.000 12.17 0.00 41.98 5.18
1442 1547 1.306141 TTGAGCTCCCGGATGAGGT 60.306 57.895 12.15 11.60 45.27 3.85
1443 1548 1.445095 CTTGAGCTCCCGGATGAGG 59.555 63.158 12.15 0.00 32.81 3.86
1445 1550 2.735772 GCCTTGAGCTCCCGGATGA 61.736 63.158 19.40 0.00 38.99 2.92
1446 1551 2.203126 GCCTTGAGCTCCCGGATG 60.203 66.667 19.40 0.00 38.99 3.51
1447 1552 3.483869 GGCCTTGAGCTCCCGGAT 61.484 66.667 19.40 0.00 43.05 4.18
1449 1554 3.764160 GATGGCCTTGAGCTCCCGG 62.764 68.421 12.15 12.48 43.05 5.73
1450 1555 2.203126 GATGGCCTTGAGCTCCCG 60.203 66.667 12.15 1.49 43.05 5.14
1451 1556 2.203126 CGATGGCCTTGAGCTCCC 60.203 66.667 12.15 5.46 43.05 4.30
1452 1557 1.522580 GACGATGGCCTTGAGCTCC 60.523 63.158 12.15 0.00 43.05 4.70
1453 1558 1.880340 CGACGATGGCCTTGAGCTC 60.880 63.158 6.82 6.82 43.05 4.09
1454 1559 2.185350 CGACGATGGCCTTGAGCT 59.815 61.111 3.32 0.00 43.05 4.09
1455 1560 2.125512 ACGACGATGGCCTTGAGC 60.126 61.111 3.32 0.00 42.60 4.26
1456 1561 1.811266 CCACGACGATGGCCTTGAG 60.811 63.158 3.32 0.00 31.52 3.02
1457 1562 2.225791 CTCCACGACGATGGCCTTGA 62.226 60.000 3.32 0.00 39.85 3.02
1458 1563 1.811266 CTCCACGACGATGGCCTTG 60.811 63.158 3.32 0.00 39.85 3.61
1459 1564 2.579201 CTCCACGACGATGGCCTT 59.421 61.111 3.32 0.00 39.85 4.35
1460 1565 4.148825 GCTCCACGACGATGGCCT 62.149 66.667 3.32 0.00 39.85 5.19
1461 1566 4.148825 AGCTCCACGACGATGGCC 62.149 66.667 0.00 0.00 39.85 5.36
1462 1567 2.583593 GAGCTCCACGACGATGGC 60.584 66.667 0.87 0.18 39.85 4.40
1463 1568 1.078759 GTTGAGCTCCACGACGATGG 61.079 60.000 12.15 5.98 41.57 3.51
1464 1569 1.078759 GGTTGAGCTCCACGACGATG 61.079 60.000 12.15 0.00 0.00 3.84
1465 1570 1.215647 GGTTGAGCTCCACGACGAT 59.784 57.895 12.15 0.00 0.00 3.73
1466 1571 2.142357 CTGGTTGAGCTCCACGACGA 62.142 60.000 12.15 1.58 0.00 4.20
1467 1572 1.734477 CTGGTTGAGCTCCACGACG 60.734 63.158 12.15 0.00 0.00 5.12
1468 1573 2.029844 GCTGGTTGAGCTCCACGAC 61.030 63.158 12.15 4.75 45.21 4.34
1469 1574 2.343758 GCTGGTTGAGCTCCACGA 59.656 61.111 12.15 6.88 45.21 4.35
1470 1575 3.114616 CGCTGGTTGAGCTCCACG 61.115 66.667 12.15 5.97 46.64 4.94
1471 1576 3.426568 GCGCTGGTTGAGCTCCAC 61.427 66.667 12.15 10.68 46.64 4.02
1472 1577 3.474486 TTGCGCTGGTTGAGCTCCA 62.474 57.895 12.15 1.22 46.64 3.86
1473 1578 2.669569 TTGCGCTGGTTGAGCTCC 60.670 61.111 12.15 0.00 46.64 4.70
1474 1579 2.558313 GTTGCGCTGGTTGAGCTC 59.442 61.111 9.73 6.82 46.64 4.09
1475 1580 2.980233 GGTTGCGCTGGTTGAGCT 60.980 61.111 9.73 0.00 46.64 4.09
1476 1581 3.259425 CTGGTTGCGCTGGTTGAGC 62.259 63.158 9.73 0.00 45.20 4.26
1477 1582 2.949106 CTGGTTGCGCTGGTTGAG 59.051 61.111 9.73 0.00 0.00 3.02
1478 1583 3.286751 GCTGGTTGCGCTGGTTGA 61.287 61.111 9.73 0.00 0.00 3.18
1479 1584 3.547249 CTGCTGGTTGCGCTGGTTG 62.547 63.158 9.73 0.00 46.63 3.77
1480 1585 3.289834 CTGCTGGTTGCGCTGGTT 61.290 61.111 9.73 0.00 46.63 3.67
1483 1588 4.400109 CTGCTGCTGGTTGCGCTG 62.400 66.667 9.73 0.00 46.63 5.18
1486 1591 4.400109 CTGCTGCTGCTGGTTGCG 62.400 66.667 17.00 0.00 46.63 4.85
1487 1592 1.968017 TACTGCTGCTGCTGGTTGC 60.968 57.895 22.83 2.57 41.57 4.17
1488 1593 0.886043 TGTACTGCTGCTGCTGGTTG 60.886 55.000 22.83 8.79 41.57 3.77
1489 1594 0.179020 TTGTACTGCTGCTGCTGGTT 60.179 50.000 22.83 8.64 41.57 3.67
1490 1595 0.886490 GTTGTACTGCTGCTGCTGGT 60.886 55.000 22.83 19.00 41.57 4.00
1491 1596 1.871772 GTTGTACTGCTGCTGCTGG 59.128 57.895 22.83 14.99 41.57 4.85
1492 1597 1.224069 ACGTTGTACTGCTGCTGCTG 61.224 55.000 18.66 18.66 42.70 4.41
1493 1598 0.946221 GACGTTGTACTGCTGCTGCT 60.946 55.000 17.00 0.00 40.48 4.24
1494 1599 0.946221 AGACGTTGTACTGCTGCTGC 60.946 55.000 8.89 8.89 40.20 5.25
1495 1600 1.063806 GAGACGTTGTACTGCTGCTG 58.936 55.000 4.89 4.89 0.00 4.41
1496 1601 0.038159 GGAGACGTTGTACTGCTGCT 60.038 55.000 0.00 0.00 0.00 4.24
1497 1602 2.446341 GGAGACGTTGTACTGCTGC 58.554 57.895 0.00 0.00 0.00 5.25
1519 1624 1.301009 GGTGGCTATCTGCGGTAGC 60.301 63.158 14.96 14.96 44.05 3.58
1520 1625 0.249489 GTGGTGGCTATCTGCGGTAG 60.249 60.000 0.00 0.00 44.05 3.18
1521 1626 1.820581 GTGGTGGCTATCTGCGGTA 59.179 57.895 0.00 0.00 44.05 4.02
1522 1627 2.584608 GTGGTGGCTATCTGCGGT 59.415 61.111 0.00 0.00 44.05 5.68
1523 1628 2.586079 CGTGGTGGCTATCTGCGG 60.586 66.667 0.00 0.00 44.05 5.69
1524 1629 3.264897 GCGTGGTGGCTATCTGCG 61.265 66.667 0.00 0.00 44.05 5.18
1525 1630 2.176273 CAGCGTGGTGGCTATCTGC 61.176 63.158 0.00 0.00 42.53 4.26
1526 1631 2.176273 GCAGCGTGGTGGCTATCTG 61.176 63.158 0.82 0.00 42.53 2.90
1527 1632 2.187946 GCAGCGTGGTGGCTATCT 59.812 61.111 0.82 0.00 42.53 1.98
1528 1633 2.897350 GGCAGCGTGGTGGCTATC 60.897 66.667 17.06 0.00 42.53 2.08
1529 1634 4.838152 CGGCAGCGTGGTGGCTAT 62.838 66.667 20.84 0.00 42.53 2.97
1546 1651 4.208686 CTGCCCCTCGTCCGCTAC 62.209 72.222 0.00 0.00 0.00 3.58
1612 1717 2.501610 GATGTCCTGCCCCTCGTC 59.498 66.667 0.00 0.00 0.00 4.20
1618 1723 4.899239 CCGCTCGATGTCCTGCCC 62.899 72.222 0.00 0.00 0.00 5.36
1637 1742 1.133216 CCAGATGCTTCGTCTCTTCGA 59.867 52.381 0.00 0.00 38.08 3.71
1640 1745 0.107945 GGCCAGATGCTTCGTCTCTT 60.108 55.000 0.00 0.00 40.92 2.85
1641 1746 1.519719 GGCCAGATGCTTCGTCTCT 59.480 57.895 0.00 0.00 40.92 3.10
1646 1751 1.068753 AGATCGGCCAGATGCTTCG 59.931 57.895 13.68 0.00 40.26 3.79
1648 1753 1.147824 CCAGATCGGCCAGATGCTT 59.852 57.895 13.68 0.00 40.26 3.91
1650 1755 1.596477 GACCAGATCGGCCAGATGC 60.596 63.158 13.68 6.80 40.26 3.91
1651 1756 0.178767 TTGACCAGATCGGCCAGATG 59.821 55.000 13.68 1.46 40.26 2.90
1653 1758 0.250234 CTTTGACCAGATCGGCCAGA 59.750 55.000 2.24 0.78 39.03 3.86
1658 1763 1.084370 GTCGCCTTTGACCAGATCGG 61.084 60.000 2.55 2.55 42.50 4.18
1660 1765 1.084370 CCGTCGCCTTTGACCAGATC 61.084 60.000 0.00 0.00 35.40 2.75
1662 1767 2.342279 CCGTCGCCTTTGACCAGA 59.658 61.111 0.00 0.00 35.40 3.86
1684 1792 2.507854 CCCACACCGACACCACTCT 61.508 63.158 0.00 0.00 0.00 3.24
1686 1794 3.556306 CCCCACACCGACACCACT 61.556 66.667 0.00 0.00 0.00 4.00
1754 1862 0.806492 GAAGCCGTCGATGAAGTCCC 60.806 60.000 6.11 0.00 0.00 4.46
1789 1897 4.953868 CGGGTGCGTCACGGTGAA 62.954 66.667 13.23 0.00 39.57 3.18
1809 1917 2.673341 AGCTCGTCGGTGCTCTCA 60.673 61.111 7.63 0.00 38.57 3.27
1876 1984 4.394712 CCACTCCTGGACGGTGCC 62.395 72.222 9.88 0.00 40.55 5.01
1886 1994 1.831652 CTTCGCCTCCAACCACTCCT 61.832 60.000 0.00 0.00 0.00 3.69
1889 1997 2.032681 GCTTCGCCTCCAACCACT 59.967 61.111 0.00 0.00 0.00 4.00
1940 2048 3.514706 CCATATGAGATCCCACTCCTCTG 59.485 52.174 3.65 0.00 36.22 3.35
1941 2049 3.788933 CCATATGAGATCCCACTCCTCT 58.211 50.000 3.65 0.00 36.22 3.69
2016 2124 2.432628 CCTTCACGTCTGCCCGTC 60.433 66.667 0.00 0.00 39.45 4.79
2020 2128 1.961277 CACACCCTTCACGTCTGCC 60.961 63.158 0.00 0.00 0.00 4.85
2022 2130 1.779569 GTACACACCCTTCACGTCTG 58.220 55.000 0.00 0.00 0.00 3.51
2023 2131 0.313043 CGTACACACCCTTCACGTCT 59.687 55.000 0.00 0.00 0.00 4.18
2026 2134 1.007336 GCTCGTACACACCCTTCACG 61.007 60.000 0.00 0.00 0.00 4.35
2027 2135 0.317479 AGCTCGTACACACCCTTCAC 59.683 55.000 0.00 0.00 0.00 3.18
2028 2136 0.601558 GAGCTCGTACACACCCTTCA 59.398 55.000 0.00 0.00 0.00 3.02
2030 2138 1.000955 CTTGAGCTCGTACACACCCTT 59.999 52.381 9.64 0.00 0.00 3.95
2031 2139 0.603569 CTTGAGCTCGTACACACCCT 59.396 55.000 9.64 0.00 0.00 4.34
2032 2140 1.014564 GCTTGAGCTCGTACACACCC 61.015 60.000 9.64 0.00 38.21 4.61
2033 2141 1.014564 GGCTTGAGCTCGTACACACC 61.015 60.000 9.64 0.00 41.70 4.16
2034 2142 0.038159 AGGCTTGAGCTCGTACACAC 60.038 55.000 9.64 0.00 41.70 3.82
2035 2143 0.243907 GAGGCTTGAGCTCGTACACA 59.756 55.000 9.64 0.00 41.70 3.72
2036 2144 0.528470 AGAGGCTTGAGCTCGTACAC 59.472 55.000 9.64 0.00 41.70 2.90
2037 2145 2.017782 CTAGAGGCTTGAGCTCGTACA 58.982 52.381 9.64 0.00 41.70 2.90
2038 2146 2.290464 TCTAGAGGCTTGAGCTCGTAC 58.710 52.381 9.64 0.00 41.70 3.67
2039 2147 2.711978 TCTAGAGGCTTGAGCTCGTA 57.288 50.000 9.64 0.00 41.70 3.43
2040 2148 1.680735 CATCTAGAGGCTTGAGCTCGT 59.319 52.381 9.64 0.00 41.70 4.18
2041 2149 1.952990 TCATCTAGAGGCTTGAGCTCG 59.047 52.381 9.64 0.00 41.70 5.03
2042 2150 5.336690 CCTTATCATCTAGAGGCTTGAGCTC 60.337 48.000 6.82 6.82 41.70 4.09
2043 2151 4.527816 CCTTATCATCTAGAGGCTTGAGCT 59.472 45.833 0.00 0.00 41.70 4.09
2044 2152 4.526262 TCCTTATCATCTAGAGGCTTGAGC 59.474 45.833 0.00 0.00 41.14 4.26
2045 2153 5.185635 CCTCCTTATCATCTAGAGGCTTGAG 59.814 48.000 0.00 1.68 37.88 3.02
2046 2154 5.083122 CCTCCTTATCATCTAGAGGCTTGA 58.917 45.833 0.00 0.00 37.88 3.02
2047 2155 4.222588 CCCTCCTTATCATCTAGAGGCTTG 59.777 50.000 0.00 0.00 42.36 4.01
2048 2156 4.424842 CCCTCCTTATCATCTAGAGGCTT 58.575 47.826 0.00 0.00 42.36 4.35
2049 2157 3.821219 GCCCTCCTTATCATCTAGAGGCT 60.821 52.174 0.00 0.00 42.36 4.58
2050 2158 2.499693 GCCCTCCTTATCATCTAGAGGC 59.500 54.545 0.00 0.00 42.36 4.70
2051 2159 3.103742 GGCCCTCCTTATCATCTAGAGG 58.896 54.545 0.00 0.00 43.16 3.69
2052 2160 2.757868 CGGCCCTCCTTATCATCTAGAG 59.242 54.545 0.00 0.00 0.00 2.43
2053 2161 2.557676 CCGGCCCTCCTTATCATCTAGA 60.558 54.545 0.00 0.00 0.00 2.43
2054 2162 1.827969 CCGGCCCTCCTTATCATCTAG 59.172 57.143 0.00 0.00 0.00 2.43
2055 2163 1.431633 TCCGGCCCTCCTTATCATCTA 59.568 52.381 0.00 0.00 0.00 1.98
2056 2164 0.191064 TCCGGCCCTCCTTATCATCT 59.809 55.000 0.00 0.00 0.00 2.90
2057 2165 1.056660 TTCCGGCCCTCCTTATCATC 58.943 55.000 0.00 0.00 0.00 2.92
2058 2166 1.143073 GTTTCCGGCCCTCCTTATCAT 59.857 52.381 0.00 0.00 0.00 2.45
2059 2167 0.544697 GTTTCCGGCCCTCCTTATCA 59.455 55.000 0.00 0.00 0.00 2.15
2060 2168 0.837940 AGTTTCCGGCCCTCCTTATC 59.162 55.000 0.00 0.00 0.00 1.75
2061 2169 0.546598 CAGTTTCCGGCCCTCCTTAT 59.453 55.000 0.00 0.00 0.00 1.73
2062 2170 1.988015 CAGTTTCCGGCCCTCCTTA 59.012 57.895 0.00 0.00 0.00 2.69
2063 2171 2.757077 CAGTTTCCGGCCCTCCTT 59.243 61.111 0.00 0.00 0.00 3.36
2064 2172 4.035102 GCAGTTTCCGGCCCTCCT 62.035 66.667 0.00 0.00 0.00 3.69
2065 2173 3.978571 GAGCAGTTTCCGGCCCTCC 62.979 68.421 0.00 0.00 31.47 4.30
2066 2174 1.614241 TAGAGCAGTTTCCGGCCCTC 61.614 60.000 0.00 0.00 31.47 4.30
2067 2175 0.983378 ATAGAGCAGTTTCCGGCCCT 60.983 55.000 0.00 0.00 31.47 5.19
2068 2176 0.533085 GATAGAGCAGTTTCCGGCCC 60.533 60.000 0.00 0.00 31.47 5.80
2069 2177 0.178068 TGATAGAGCAGTTTCCGGCC 59.822 55.000 0.00 0.00 31.47 6.13
2070 2178 2.024176 TTGATAGAGCAGTTTCCGGC 57.976 50.000 0.00 0.00 0.00 6.13
2071 2179 3.375299 CCTTTTGATAGAGCAGTTTCCGG 59.625 47.826 0.00 0.00 0.00 5.14
2072 2180 4.003648 ACCTTTTGATAGAGCAGTTTCCG 58.996 43.478 0.00 0.00 0.00 4.30
2073 2181 5.938125 TGTACCTTTTGATAGAGCAGTTTCC 59.062 40.000 0.00 0.00 0.00 3.13
2074 2182 7.435068 TTGTACCTTTTGATAGAGCAGTTTC 57.565 36.000 0.00 0.00 0.00 2.78
2075 2183 8.947115 GTATTGTACCTTTTGATAGAGCAGTTT 58.053 33.333 0.00 0.00 0.00 2.66
2076 2184 8.322091 AGTATTGTACCTTTTGATAGAGCAGTT 58.678 33.333 0.00 0.00 0.00 3.16
2077 2185 7.852263 AGTATTGTACCTTTTGATAGAGCAGT 58.148 34.615 0.00 0.00 0.00 4.40
2078 2186 9.250624 GTAGTATTGTACCTTTTGATAGAGCAG 57.749 37.037 0.00 0.00 0.00 4.24
2079 2187 8.978472 AGTAGTATTGTACCTTTTGATAGAGCA 58.022 33.333 0.00 0.00 0.00 4.26
2080 2188 9.465985 GAGTAGTATTGTACCTTTTGATAGAGC 57.534 37.037 0.00 0.00 0.00 4.09
2081 2189 9.968870 GGAGTAGTATTGTACCTTTTGATAGAG 57.031 37.037 0.00 0.00 0.00 2.43
2082 2190 8.921205 GGGAGTAGTATTGTACCTTTTGATAGA 58.079 37.037 0.00 0.00 0.00 1.98
2083 2191 8.925338 AGGGAGTAGTATTGTACCTTTTGATAG 58.075 37.037 0.00 0.00 0.00 2.08
2084 2192 8.849543 AGGGAGTAGTATTGTACCTTTTGATA 57.150 34.615 0.00 0.00 0.00 2.15
2085 2193 7.147532 GGAGGGAGTAGTATTGTACCTTTTGAT 60.148 40.741 0.00 0.00 0.00 2.57
2086 2194 6.155737 GGAGGGAGTAGTATTGTACCTTTTGA 59.844 42.308 0.00 0.00 0.00 2.69
2087 2195 6.070424 TGGAGGGAGTAGTATTGTACCTTTTG 60.070 42.308 0.00 0.00 0.00 2.44
2088 2196 6.027482 TGGAGGGAGTAGTATTGTACCTTTT 58.973 40.000 0.00 0.00 0.00 2.27
2089 2197 5.596763 TGGAGGGAGTAGTATTGTACCTTT 58.403 41.667 0.00 0.00 0.00 3.11
2090 2198 5.216665 TGGAGGGAGTAGTATTGTACCTT 57.783 43.478 0.00 0.00 0.00 3.50
2091 2199 4.894252 TGGAGGGAGTAGTATTGTACCT 57.106 45.455 0.00 0.00 0.00 3.08
2092 2200 7.607615 TTTATGGAGGGAGTAGTATTGTACC 57.392 40.000 0.00 0.00 0.00 3.34
2133 2241 9.226606 CCCACTGTAAACAAATTAGTGATCTAA 57.773 33.333 0.00 0.00 40.80 2.10
2134 2242 8.598916 TCCCACTGTAAACAAATTAGTGATCTA 58.401 33.333 0.00 0.00 40.80 1.98
2135 2243 7.458397 TCCCACTGTAAACAAATTAGTGATCT 58.542 34.615 0.00 0.00 40.80 2.75
2136 2244 7.390718 ACTCCCACTGTAAACAAATTAGTGATC 59.609 37.037 0.00 0.00 40.80 2.92
2137 2245 7.231467 ACTCCCACTGTAAACAAATTAGTGAT 58.769 34.615 0.00 0.00 40.80 3.06
2138 2246 6.597562 ACTCCCACTGTAAACAAATTAGTGA 58.402 36.000 0.00 0.00 40.80 3.41
2139 2247 6.877611 ACTCCCACTGTAAACAAATTAGTG 57.122 37.500 0.00 0.00 38.70 2.74
2140 2248 7.742767 AGTACTCCCACTGTAAACAAATTAGT 58.257 34.615 0.00 0.00 0.00 2.24
2141 2249 8.617290 AAGTACTCCCACTGTAAACAAATTAG 57.383 34.615 0.00 0.00 0.00 1.73
2142 2250 8.983702 AAAGTACTCCCACTGTAAACAAATTA 57.016 30.769 0.00 0.00 0.00 1.40
2143 2251 7.891498 AAAGTACTCCCACTGTAAACAAATT 57.109 32.000 0.00 0.00 0.00 1.82
2144 2252 7.340999 ACAAAAGTACTCCCACTGTAAACAAAT 59.659 33.333 0.00 0.00 0.00 2.32
2145 2253 6.660094 ACAAAAGTACTCCCACTGTAAACAAA 59.340 34.615 0.00 0.00 0.00 2.83
2146 2254 6.181908 ACAAAAGTACTCCCACTGTAAACAA 58.818 36.000 0.00 0.00 0.00 2.83
2147 2255 5.747342 ACAAAAGTACTCCCACTGTAAACA 58.253 37.500 0.00 0.00 0.00 2.83
2148 2256 6.688637 AACAAAAGTACTCCCACTGTAAAC 57.311 37.500 0.00 0.00 0.00 2.01
2149 2257 6.404954 GCAAACAAAAGTACTCCCACTGTAAA 60.405 38.462 0.00 0.00 0.00 2.01
2150 2258 5.066764 GCAAACAAAAGTACTCCCACTGTAA 59.933 40.000 0.00 0.00 0.00 2.41
2151 2259 4.577283 GCAAACAAAAGTACTCCCACTGTA 59.423 41.667 0.00 0.00 0.00 2.74
2152 2260 3.380320 GCAAACAAAAGTACTCCCACTGT 59.620 43.478 0.00 0.00 0.00 3.55
2153 2261 3.380004 TGCAAACAAAAGTACTCCCACTG 59.620 43.478 0.00 0.00 0.00 3.66
2154 2262 3.380320 GTGCAAACAAAAGTACTCCCACT 59.620 43.478 0.00 0.00 0.00 4.00
2155 2263 3.380320 AGTGCAAACAAAAGTACTCCCAC 59.620 43.478 0.00 0.00 0.00 4.61
2156 2264 3.626930 AGTGCAAACAAAAGTACTCCCA 58.373 40.909 0.00 0.00 0.00 4.37
2157 2265 5.049612 GTCTAGTGCAAACAAAAGTACTCCC 60.050 44.000 0.00 0.00 32.86 4.30
2158 2266 5.758784 AGTCTAGTGCAAACAAAAGTACTCC 59.241 40.000 0.00 0.00 32.86 3.85
2159 2267 6.846325 AGTCTAGTGCAAACAAAAGTACTC 57.154 37.500 0.00 0.00 32.86 2.59
2160 2268 7.723324 TCTAGTCTAGTGCAAACAAAAGTACT 58.277 34.615 6.77 0.00 34.97 2.73
2161 2269 7.941795 TCTAGTCTAGTGCAAACAAAAGTAC 57.058 36.000 6.77 0.00 0.00 2.73
2162 2270 7.117812 GCATCTAGTCTAGTGCAAACAAAAGTA 59.882 37.037 20.45 0.00 34.87 2.24
2163 2271 6.073003 GCATCTAGTCTAGTGCAAACAAAAGT 60.073 38.462 20.45 0.00 34.87 2.66
2164 2272 6.073058 TGCATCTAGTCTAGTGCAAACAAAAG 60.073 38.462 23.43 0.00 38.72 2.27
2165 2273 5.762711 TGCATCTAGTCTAGTGCAAACAAAA 59.237 36.000 23.43 8.41 38.72 2.44
2166 2274 5.179368 GTGCATCTAGTCTAGTGCAAACAAA 59.821 40.000 25.53 10.14 41.17 2.83
2167 2275 4.690748 GTGCATCTAGTCTAGTGCAAACAA 59.309 41.667 25.53 10.62 41.17 2.83
2168 2276 4.245660 GTGCATCTAGTCTAGTGCAAACA 58.754 43.478 25.53 10.87 41.17 2.83
2169 2277 4.245660 TGTGCATCTAGTCTAGTGCAAAC 58.754 43.478 25.53 18.86 41.17 2.93
2170 2278 4.498241 CTGTGCATCTAGTCTAGTGCAAA 58.502 43.478 25.53 21.96 41.17 3.68
2171 2279 3.677148 GCTGTGCATCTAGTCTAGTGCAA 60.677 47.826 25.53 18.45 41.17 4.08
2172 2280 2.159184 GCTGTGCATCTAGTCTAGTGCA 60.159 50.000 22.54 22.54 39.07 4.57
2173 2281 2.100584 AGCTGTGCATCTAGTCTAGTGC 59.899 50.000 19.37 19.37 35.13 4.40
2174 2282 4.111198 CAAGCTGTGCATCTAGTCTAGTG 58.889 47.826 6.77 6.06 0.00 2.74
2175 2283 3.766591 ACAAGCTGTGCATCTAGTCTAGT 59.233 43.478 6.77 0.00 0.00 2.57
2176 2284 4.383850 ACAAGCTGTGCATCTAGTCTAG 57.616 45.455 0.00 0.00 0.00 2.43
2177 2285 4.808414 AACAAGCTGTGCATCTAGTCTA 57.192 40.909 0.00 0.00 0.00 2.59
2178 2286 3.692257 AACAAGCTGTGCATCTAGTCT 57.308 42.857 0.00 0.00 0.00 3.24
2179 2287 5.862924 TTTAACAAGCTGTGCATCTAGTC 57.137 39.130 0.00 0.00 0.00 2.59
2180 2288 6.824305 ATTTTAACAAGCTGTGCATCTAGT 57.176 33.333 0.00 0.00 0.00 2.57
2181 2289 8.400947 ACATATTTTAACAAGCTGTGCATCTAG 58.599 33.333 0.00 0.00 0.00 2.43
2182 2290 8.183536 CACATATTTTAACAAGCTGTGCATCTA 58.816 33.333 0.00 0.00 0.00 1.98
2183 2291 7.031372 CACATATTTTAACAAGCTGTGCATCT 58.969 34.615 0.00 0.00 0.00 2.90
2184 2292 6.808212 ACACATATTTTAACAAGCTGTGCATC 59.192 34.615 0.00 0.00 36.79 3.91
2185 2293 6.587226 CACACATATTTTAACAAGCTGTGCAT 59.413 34.615 0.00 0.00 36.79 3.96
2186 2294 5.919707 CACACATATTTTAACAAGCTGTGCA 59.080 36.000 0.00 0.00 36.79 4.57
2187 2295 6.148948 TCACACATATTTTAACAAGCTGTGC 58.851 36.000 0.00 0.00 36.79 4.57
2188 2296 8.746922 ATTCACACATATTTTAACAAGCTGTG 57.253 30.769 0.00 0.00 38.69 3.66
2218 2326 9.213777 ACAAACTTGTTCCTATATGGATCTAGA 57.786 33.333 0.00 0.00 45.68 2.43
2230 2338 9.796120 CAAGTTGATTTTACAAACTTGTTCCTA 57.204 29.630 15.81 0.00 42.35 2.94
2231 2339 7.763985 CCAAGTTGATTTTACAAACTTGTTCCT 59.236 33.333 20.13 0.00 42.35 3.36
2232 2340 7.762159 TCCAAGTTGATTTTACAAACTTGTTCC 59.238 33.333 20.13 0.00 42.35 3.62
2233 2341 8.696410 TCCAAGTTGATTTTACAAACTTGTTC 57.304 30.769 20.13 0.00 42.35 3.18
2234 2342 9.665719 ATTCCAAGTTGATTTTACAAACTTGTT 57.334 25.926 20.13 7.48 42.35 2.83
2235 2343 9.665719 AATTCCAAGTTGATTTTACAAACTTGT 57.334 25.926 20.13 0.07 44.86 3.16
2280 2388 8.154649 AGAAAGAGAAAATCTAGTCGCAAAAA 57.845 30.769 0.00 0.00 37.23 1.94
2281 2389 7.441157 TGAGAAAGAGAAAATCTAGTCGCAAAA 59.559 33.333 0.00 0.00 37.23 2.44
2282 2390 6.929049 TGAGAAAGAGAAAATCTAGTCGCAAA 59.071 34.615 0.00 0.00 37.23 3.68
2283 2391 6.455647 TGAGAAAGAGAAAATCTAGTCGCAA 58.544 36.000 0.00 0.00 37.23 4.85
2284 2392 6.025749 TGAGAAAGAGAAAATCTAGTCGCA 57.974 37.500 0.00 0.00 37.23 5.10
2285 2393 6.754209 TGATGAGAAAGAGAAAATCTAGTCGC 59.246 38.462 0.00 0.00 37.23 5.19
2286 2394 8.694975 TTGATGAGAAAGAGAAAATCTAGTCG 57.305 34.615 0.00 0.00 37.23 4.18
2297 2405 8.616942 CGTCTTAGTAGATTGATGAGAAAGAGA 58.383 37.037 0.00 0.00 31.86 3.10
2298 2406 8.616942 TCGTCTTAGTAGATTGATGAGAAAGAG 58.383 37.037 0.00 0.00 31.86 2.85
2299 2407 8.399425 GTCGTCTTAGTAGATTGATGAGAAAGA 58.601 37.037 0.00 0.00 31.86 2.52
2300 2408 8.184848 TGTCGTCTTAGTAGATTGATGAGAAAG 58.815 37.037 0.00 0.00 31.86 2.62
2301 2409 7.968956 GTGTCGTCTTAGTAGATTGATGAGAAA 59.031 37.037 0.00 0.00 31.86 2.52
2302 2410 7.120726 TGTGTCGTCTTAGTAGATTGATGAGAA 59.879 37.037 0.00 0.00 31.86 2.87
2303 2411 6.598064 TGTGTCGTCTTAGTAGATTGATGAGA 59.402 38.462 0.00 0.00 31.86 3.27
2304 2412 6.786207 TGTGTCGTCTTAGTAGATTGATGAG 58.214 40.000 0.00 0.00 31.86 2.90
2305 2413 6.753107 TGTGTCGTCTTAGTAGATTGATGA 57.247 37.500 0.00 0.00 31.86 2.92
2306 2414 7.201444 GGTTTGTGTCGTCTTAGTAGATTGATG 60.201 40.741 0.00 0.00 31.86 3.07
2307 2415 6.812160 GGTTTGTGTCGTCTTAGTAGATTGAT 59.188 38.462 0.00 0.00 31.86 2.57
2308 2416 6.154445 GGTTTGTGTCGTCTTAGTAGATTGA 58.846 40.000 0.00 0.00 31.86 2.57
2309 2417 5.347907 GGGTTTGTGTCGTCTTAGTAGATTG 59.652 44.000 0.00 0.00 31.86 2.67
2310 2418 5.245526 AGGGTTTGTGTCGTCTTAGTAGATT 59.754 40.000 0.00 0.00 31.86 2.40
2311 2419 4.771054 AGGGTTTGTGTCGTCTTAGTAGAT 59.229 41.667 0.00 0.00 31.86 1.98
2312 2420 4.147321 AGGGTTTGTGTCGTCTTAGTAGA 58.853 43.478 0.00 0.00 0.00 2.59
2313 2421 4.516365 AGGGTTTGTGTCGTCTTAGTAG 57.484 45.455 0.00 0.00 0.00 2.57
2314 2422 4.942761 AAGGGTTTGTGTCGTCTTAGTA 57.057 40.909 0.00 0.00 0.00 1.82
2315 2423 3.832615 AAGGGTTTGTGTCGTCTTAGT 57.167 42.857 0.00 0.00 0.00 2.24
2316 2424 7.816031 TCTTTATAAGGGTTTGTGTCGTCTTAG 59.184 37.037 0.00 0.00 0.00 2.18
2317 2425 7.669427 TCTTTATAAGGGTTTGTGTCGTCTTA 58.331 34.615 0.00 0.00 0.00 2.10
2318 2426 6.527423 TCTTTATAAGGGTTTGTGTCGTCTT 58.473 36.000 0.00 0.00 0.00 3.01
2319 2427 6.105397 TCTTTATAAGGGTTTGTGTCGTCT 57.895 37.500 0.00 0.00 0.00 4.18
2320 2428 6.980051 ATCTTTATAAGGGTTTGTGTCGTC 57.020 37.500 0.00 0.00 0.00 4.20
2321 2429 7.229907 ACAAATCTTTATAAGGGTTTGTGTCGT 59.770 33.333 28.33 11.21 41.55 4.34
2322 2430 7.590279 ACAAATCTTTATAAGGGTTTGTGTCG 58.410 34.615 28.33 10.65 41.55 4.35
2361 2469 9.283768 TGCAACTTGATAGAACTATTTTTCAGA 57.716 29.630 0.00 0.00 0.00 3.27
2362 2470 9.334693 GTGCAACTTGATAGAACTATTTTTCAG 57.665 33.333 0.00 0.00 0.00 3.02
2363 2471 8.845227 TGTGCAACTTGATAGAACTATTTTTCA 58.155 29.630 0.00 0.00 38.04 2.69
2364 2472 9.846248 ATGTGCAACTTGATAGAACTATTTTTC 57.154 29.630 0.00 0.00 38.04 2.29
2365 2473 9.846248 GATGTGCAACTTGATAGAACTATTTTT 57.154 29.630 0.00 0.00 38.04 1.94
2366 2474 9.013229 TGATGTGCAACTTGATAGAACTATTTT 57.987 29.630 0.00 0.00 38.04 1.82
2367 2475 8.565896 TGATGTGCAACTTGATAGAACTATTT 57.434 30.769 0.00 0.00 38.04 1.40
2368 2476 8.618677 CATGATGTGCAACTTGATAGAACTATT 58.381 33.333 0.00 0.00 38.04 1.73
2369 2477 7.989170 TCATGATGTGCAACTTGATAGAACTAT 59.011 33.333 0.00 0.00 38.04 2.12
2370 2478 7.330262 TCATGATGTGCAACTTGATAGAACTA 58.670 34.615 0.00 0.00 38.04 2.24
2371 2479 6.175471 TCATGATGTGCAACTTGATAGAACT 58.825 36.000 0.00 0.00 38.04 3.01
2372 2480 6.426980 TCATGATGTGCAACTTGATAGAAC 57.573 37.500 0.00 0.00 38.04 3.01
2373 2481 6.656270 ACTTCATGATGTGCAACTTGATAGAA 59.344 34.615 13.08 0.00 38.04 2.10
2374 2482 6.175471 ACTTCATGATGTGCAACTTGATAGA 58.825 36.000 13.08 0.00 38.04 1.98
2375 2483 6.432607 ACTTCATGATGTGCAACTTGATAG 57.567 37.500 13.08 0.00 38.04 2.08
2376 2484 5.355071 GGACTTCATGATGTGCAACTTGATA 59.645 40.000 22.93 0.00 38.04 2.15
2377 2485 4.157289 GGACTTCATGATGTGCAACTTGAT 59.843 41.667 22.93 0.00 38.04 2.57
2378 2486 3.503363 GGACTTCATGATGTGCAACTTGA 59.497 43.478 22.93 0.00 38.04 3.02
2379 2487 3.504906 AGGACTTCATGATGTGCAACTTG 59.495 43.478 27.34 0.00 38.04 3.16
2380 2488 3.759581 AGGACTTCATGATGTGCAACTT 58.240 40.909 27.34 10.36 38.04 2.66
2381 2489 3.430042 AGGACTTCATGATGTGCAACT 57.570 42.857 27.34 14.16 38.04 3.16
2382 2490 4.510038 AAAGGACTTCATGATGTGCAAC 57.490 40.909 27.34 11.33 37.35 4.17
2383 2491 6.647334 TTTAAAGGACTTCATGATGTGCAA 57.353 33.333 27.34 14.95 30.97 4.08
2384 2492 6.647334 TTTTAAAGGACTTCATGATGTGCA 57.353 33.333 27.34 10.65 30.97 4.57
2406 2514 4.695396 TGCTTCATGATGTGCAACTTTTT 58.305 34.783 13.69 0.00 38.04 1.94
2407 2515 4.038282 TCTGCTTCATGATGTGCAACTTTT 59.962 37.500 15.86 0.00 38.04 2.27
2408 2516 3.570975 TCTGCTTCATGATGTGCAACTTT 59.429 39.130 15.86 0.00 38.04 2.66
2409 2517 3.151554 TCTGCTTCATGATGTGCAACTT 58.848 40.909 15.86 0.00 38.04 2.66
2410 2518 2.786777 TCTGCTTCATGATGTGCAACT 58.213 42.857 15.86 0.00 38.04 3.16
2411 2519 3.777465 ATCTGCTTCATGATGTGCAAC 57.223 42.857 15.86 0.00 34.90 4.17
2412 2520 4.263435 TGTATCTGCTTCATGATGTGCAA 58.737 39.130 15.86 9.79 34.90 4.08
2413 2521 3.876341 TGTATCTGCTTCATGATGTGCA 58.124 40.909 14.79 14.79 0.00 4.57
2414 2522 4.888038 TTGTATCTGCTTCATGATGTGC 57.112 40.909 10.05 9.15 0.00 4.57
2415 2523 9.961265 ATATTTTTGTATCTGCTTCATGATGTG 57.039 29.630 10.05 4.45 0.00 3.21
2463 2571 8.599774 GTGACTGAAATCTAGCTAAAGTGATTC 58.400 37.037 6.45 1.98 0.00 2.52
2464 2572 7.550906 GGTGACTGAAATCTAGCTAAAGTGATT 59.449 37.037 0.00 0.00 0.00 2.57
2489 2597 6.734104 TTGACCACAAAACAAAAATTCAGG 57.266 33.333 0.00 0.00 32.73 3.86
2626 2753 1.673760 CACGCACCAAAATTCAGTCG 58.326 50.000 0.00 0.00 0.00 4.18
2628 2755 0.743688 TGCACGCACCAAAATTCAGT 59.256 45.000 0.00 0.00 0.00 3.41
2656 2783 4.942761 AGACAAAAGCAAACACATGGAT 57.057 36.364 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.