Multiple sequence alignment - TraesCS5D01G311000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G311000 chr5D 100.000 8569 0 0 1 8569 407531167 407522599 0.000000e+00 15825.0
1 TraesCS5D01G311000 chr5D 99.123 228 1 1 4779 5005 407526167 407525940 8.010000e-110 409.0
2 TraesCS5D01G311000 chr5D 99.123 228 1 1 5001 5228 407526389 407526163 8.010000e-110 409.0
3 TraesCS5D01G311000 chr5D 96.078 51 2 0 3825 3875 547716644 547716694 5.510000e-12 84.2
4 TraesCS5D01G311000 chr5D 91.228 57 3 1 3822 3878 539963231 539963177 9.220000e-10 76.8
5 TraesCS5D01G311000 chr5A 98.027 3143 50 7 1872 5005 512833174 512830035 0.000000e+00 5450.0
6 TraesCS5D01G311000 chr5A 96.988 2988 50 10 5001 7950 512830262 512827277 0.000000e+00 4983.0
7 TraesCS5D01G311000 chr5A 95.582 1177 25 14 719 1886 512834348 512833190 0.000000e+00 1860.0
8 TraesCS5D01G311000 chr5A 94.118 187 8 2 7943 8129 512827253 512827070 1.820000e-71 281.0
9 TraesCS5D01G311000 chr5A 95.000 40 2 0 3765 3804 623220413 623220374 7.180000e-06 63.9
10 TraesCS5D01G311000 chr5A 94.595 37 1 1 6525 6560 522103457 522103421 1.000000e-03 56.5
11 TraesCS5D01G311000 chr5B 94.952 3368 128 25 1637 4975 488613643 488610289 0.000000e+00 5240.0
12 TraesCS5D01G311000 chr5B 96.206 2267 48 10 5001 7248 488610487 488608240 0.000000e+00 3675.0
13 TraesCS5D01G311000 chr5B 92.995 728 19 15 936 1652 488614392 488613686 0.000000e+00 1033.0
14 TraesCS5D01G311000 chr5B 90.525 686 32 11 7276 7950 488607937 488607274 0.000000e+00 876.0
15 TraesCS5D01G311000 chr5B 88.588 517 38 15 359 868 488615298 488614796 7.360000e-170 608.0
16 TraesCS5D01G311000 chr5B 91.584 202 14 2 7949 8149 488607245 488607046 8.470000e-70 276.0
17 TraesCS5D01G311000 chr5B 85.161 155 21 2 3715 3868 488611383 488611536 3.200000e-34 158.0
18 TraesCS5D01G311000 chr5B 94.872 39 2 0 17 55 488615321 488615283 2.580000e-05 62.1
19 TraesCS5D01G311000 chr6B 85.813 1297 152 18 5259 6535 664265008 664266292 0.000000e+00 1347.0
20 TraesCS5D01G311000 chr6B 85.675 726 90 10 2560 3278 664257050 664257768 0.000000e+00 752.0
21 TraesCS5D01G311000 chr6B 93.293 328 20 2 37 362 551769898 551770225 4.650000e-132 483.0
22 TraesCS5D01G311000 chr6B 81.102 635 80 19 4209 4833 664258340 664258944 1.010000e-128 472.0
23 TraesCS5D01G311000 chr6B 86.408 412 46 8 6766 7174 664266602 664267006 7.890000e-120 442.0
24 TraesCS5D01G311000 chr6B 86.552 290 33 5 3309 3597 664257881 664258165 1.800000e-81 315.0
25 TraesCS5D01G311000 chr6B 94.495 109 2 2 2423 2527 664256859 664256967 1.910000e-36 165.0
26 TraesCS5D01G311000 chr6B 80.556 180 34 1 6580 6758 664266271 664266450 4.170000e-28 137.0
27 TraesCS5D01G311000 chr6B 82.119 151 20 4 1008 1153 664256280 664256428 1.170000e-23 122.0
28 TraesCS5D01G311000 chr6B 94.340 53 1 2 3823 3874 534516745 534516796 7.130000e-11 80.5
29 TraesCS5D01G311000 chr6A 85.464 1314 159 21 5241 6531 587813855 587815159 0.000000e+00 1339.0
30 TraesCS5D01G311000 chr6A 82.479 702 93 23 2583 3278 587808475 587809152 9.580000e-164 588.0
31 TraesCS5D01G311000 chr6A 95.455 308 14 0 49 356 39064850 39065157 7.730000e-135 492.0
32 TraesCS5D01G311000 chr6A 81.348 638 80 22 4209 4840 587809840 587810444 4.650000e-132 483.0
33 TraesCS5D01G311000 chr6A 87.531 409 42 7 6766 7171 587815447 587815849 1.680000e-126 464.0
34 TraesCS5D01G311000 chr6A 88.889 153 7 3 2385 2527 587808247 587808399 6.830000e-41 180.0
35 TraesCS5D01G311000 chr6A 73.514 589 89 43 1008 1573 587807521 587808065 2.480000e-35 161.0
36 TraesCS5D01G311000 chr6A 81.928 166 23 4 8224 8382 536020273 536020438 5.400000e-27 134.0
37 TraesCS5D01G311000 chr6A 81.022 137 22 3 3597 3729 587809718 587809854 1.180000e-18 106.0
38 TraesCS5D01G311000 chr6A 94.340 53 2 1 3823 3874 496841961 496842013 7.130000e-11 80.5
39 TraesCS5D01G311000 chr6A 97.500 40 1 0 3728 3767 60232390 60232429 1.540000e-07 69.4
40 TraesCS5D01G311000 chr6A 94.444 36 2 0 3721 3756 88080303 88080338 1.000000e-03 56.5
41 TraesCS5D01G311000 chr6D 83.088 1289 162 23 5264 6526 438921257 438922515 0.000000e+00 1122.0
42 TraesCS5D01G311000 chr6D 83.356 721 83 22 2560 3278 438914275 438914960 4.360000e-177 632.0
43 TraesCS5D01G311000 chr6D 87.531 409 42 7 6766 7171 438922992 438923394 1.680000e-126 464.0
44 TraesCS5D01G311000 chr6D 83.686 472 56 9 4258 4721 438915448 438915906 7.950000e-115 425.0
45 TraesCS5D01G311000 chr6D 87.629 291 32 4 3309 3597 438915079 438915367 1.380000e-87 335.0
46 TraesCS5D01G311000 chr6D 80.128 312 35 12 8209 8500 354104068 354104372 3.130000e-49 207.0
47 TraesCS5D01G311000 chr6D 96.629 89 3 0 2425 2513 438914086 438914174 1.930000e-31 148.0
48 TraesCS5D01G311000 chr6D 94.444 36 2 0 3721 3756 71537423 71537458 1.000000e-03 56.5
49 TraesCS5D01G311000 chr6D 86.275 51 3 3 3765 3812 200865454 200865405 1.600000e-02 52.8
50 TraesCS5D01G311000 chr4B 88.971 680 50 12 4181 4844 662609848 662610518 0.000000e+00 817.0
51 TraesCS5D01G311000 chr4B 88.000 100 7 1 8360 8459 24915042 24915136 7.030000e-21 113.0
52 TraesCS5D01G311000 chr4B 94.872 39 2 0 6548 6586 399947045 399947083 2.580000e-05 62.1
53 TraesCS5D01G311000 chr4B 92.500 40 2 1 529 567 24675821 24675860 1.000000e-03 56.5
54 TraesCS5D01G311000 chrUn 95.192 312 14 1 46 356 48224575 48224264 7.730000e-135 492.0
55 TraesCS5D01G311000 chrUn 95.192 312 14 1 46 356 48225883 48225572 7.730000e-135 492.0
56 TraesCS5D01G311000 chrUn 95.192 312 14 1 46 356 421392536 421392225 7.730000e-135 492.0
57 TraesCS5D01G311000 chrUn 91.667 60 4 1 359 418 83389421 83389479 1.980000e-11 82.4
58 TraesCS5D01G311000 chrUn 97.222 36 1 0 3739 3774 376297021 376297056 2.580000e-05 62.1
59 TraesCS5D01G311000 chr4A 95.752 306 12 1 52 356 591931449 591931754 7.730000e-135 492.0
60 TraesCS5D01G311000 chr4A 100.000 29 0 0 6529 6557 566288133 566288161 4.000000e-03 54.7
61 TraesCS5D01G311000 chr2B 95.425 306 14 0 52 357 33847652 33847347 1.000000e-133 488.0
62 TraesCS5D01G311000 chr2B 96.970 33 0 1 3801 3833 753824061 753824092 4.000000e-03 54.7
63 TraesCS5D01G311000 chr1A 95.130 308 15 0 51 358 380580361 380580054 3.600000e-133 486.0
64 TraesCS5D01G311000 chr1A 92.945 326 23 0 33 358 537536421 537536746 7.780000e-130 475.0
65 TraesCS5D01G311000 chr1A 94.545 55 3 0 3822 3876 587861355 587861301 1.530000e-12 86.1
66 TraesCS5D01G311000 chr1A 95.652 46 2 0 3722 3767 568396077 568396122 3.320000e-09 75.0
67 TraesCS5D01G311000 chr1A 100.000 28 0 0 3801 3828 583884710 583884683 1.600000e-02 52.8
68 TraesCS5D01G311000 chr2A 81.176 255 33 8 8209 8458 33045415 33045659 3.160000e-44 191.0
69 TraesCS5D01G311000 chr3B 84.021 194 25 3 8209 8396 704258294 704258101 1.900000e-41 182.0
70 TraesCS5D01G311000 chr3B 82.474 194 10 9 8208 8389 71975765 71975584 1.930000e-31 148.0
71 TraesCS5D01G311000 chr3B 74.444 270 52 11 8224 8478 706249971 706250238 5.470000e-17 100.0
72 TraesCS5D01G311000 chr3B 87.059 85 7 1 8225 8309 6088474 6088394 9.160000e-15 93.5
73 TraesCS5D01G311000 chr3B 100.000 28 0 0 3801 3828 157237654 157237627 1.600000e-02 52.8
74 TraesCS5D01G311000 chr3A 78.457 311 33 16 8208 8512 73618286 73618568 1.140000e-38 172.0
75 TraesCS5D01G311000 chr3A 96.364 55 2 0 8149 8203 941768 941822 3.290000e-14 91.6
76 TraesCS5D01G311000 chr3A 89.286 56 6 0 8513 8568 941824 941879 4.290000e-08 71.3
77 TraesCS5D01G311000 chr7A 94.444 72 4 0 8150 8221 634450659 634450730 2.530000e-20 111.0
78 TraesCS5D01G311000 chr1B 75.893 224 40 4 8239 8461 655805773 655805563 1.520000e-17 102.0
79 TraesCS5D01G311000 chr1B 96.364 55 1 1 3822 3875 571427541 571427595 1.180000e-13 89.8
80 TraesCS5D01G311000 chr1B 97.222 36 1 0 3739 3774 24741481 24741516 2.580000e-05 62.1
81 TraesCS5D01G311000 chr7D 100.000 37 0 0 3726 3762 514070475 514070439 1.540000e-07 69.4
82 TraesCS5D01G311000 chr7D 100.000 28 0 0 3801 3828 634890896 634890923 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G311000 chr5D 407522599 407531167 8568 True 15825.000000 15825 100.000000 1 8569 1 chr5D.!!$R1 8568
1 TraesCS5D01G311000 chr5A 512827070 512834348 7278 True 3143.500000 5450 96.178750 719 8129 4 chr5A.!!$R3 7410
2 TraesCS5D01G311000 chr5B 488607046 488615321 8275 True 1681.442857 5240 92.817429 17 8149 7 chr5B.!!$R1 8132
3 TraesCS5D01G311000 chr6B 664265008 664267006 1998 False 642.000000 1347 84.259000 5259 7174 3 chr6B.!!$F4 1915
4 TraesCS5D01G311000 chr6B 664256280 664258944 2664 False 365.200000 752 85.988600 1008 4833 5 chr6B.!!$F3 3825
5 TraesCS5D01G311000 chr6A 587807521 587815849 8328 False 474.428571 1339 82.892429 1008 7171 7 chr6A.!!$F6 6163
6 TraesCS5D01G311000 chr6D 438921257 438923394 2137 False 793.000000 1122 85.309500 5264 7171 2 chr6D.!!$F4 1907
7 TraesCS5D01G311000 chr6D 438914086 438915906 1820 False 385.000000 632 87.825000 2425 4721 4 chr6D.!!$F3 2296
8 TraesCS5D01G311000 chr4B 662609848 662610518 670 False 817.000000 817 88.971000 4181 4844 1 chr4B.!!$F4 663
9 TraesCS5D01G311000 chrUn 48224264 48225883 1619 True 492.000000 492 95.192000 46 356 2 chrUn.!!$R2 310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 677 0.672401 TGAAAATCGGGGTCGCTGAC 60.672 55.000 0.00 0.79 36.13 3.51 F
1967 2549 0.744281 CGTTGCCCAAAAGGTTCTGT 59.256 50.000 0.00 0.00 38.26 3.41 F
3019 3688 2.798976 TTCAACAGCTTTGGCATGTC 57.201 45.000 0.00 0.00 41.70 3.06 F
4163 5129 0.603707 TGACTGTTACAGCTGCCAGC 60.604 55.000 21.86 9.13 42.84 4.85 F
4970 9232 1.692519 ACACGTAGTTTTCTGCTCCCT 59.307 47.619 0.00 0.00 41.61 4.20 F
5193 9456 1.692519 ACACGTAGTTTTCTGCTCCCT 59.307 47.619 0.00 0.00 41.61 4.20 F
5266 9529 1.746470 TCTCAGCAGCATCAACATGG 58.254 50.000 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2174 2757 0.251354 TCTGGCAATCCTGAGAGCAC 59.749 55.000 0.00 0.0 35.69 4.40 R
3115 3789 2.754946 TAGAGCCCTAAAACACACCG 57.245 50.000 0.00 0.0 0.00 4.94 R
4950 9212 1.692519 AGGGAGCAGAAAACTACGTGT 59.307 47.619 0.00 0.0 0.00 4.49 R
5007 9269 1.703411 AGGGCTTTAAGTTTGCAGCA 58.297 45.000 0.00 0.0 33.64 4.41 R
6075 10365 7.451501 TCTGTTATCAACTGCAAAATCATGA 57.548 32.000 0.00 0.0 0.00 3.07 R
7525 12468 1.614241 GGTGTCTGGTGCCGTATCCT 61.614 60.000 0.00 0.0 0.00 3.24 R
7622 12565 1.627297 ATCCACCGGGCCTTCTTCTC 61.627 60.000 6.32 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 2.125713 CGCGCATACACTCACCCA 60.126 61.111 8.75 0.00 0.00 4.51
118 119 4.693283 CATACACTCACCCATATGAACGT 58.307 43.478 3.65 0.00 0.00 3.99
142 143 4.245660 CACACGCATATCCTACCCTTATG 58.754 47.826 0.00 0.00 0.00 1.90
149 150 2.868964 TCCTACCCTTATGAGCACCT 57.131 50.000 0.00 0.00 0.00 4.00
154 155 0.830648 CCCTTATGAGCACCTCCGAA 59.169 55.000 0.00 0.00 0.00 4.30
178 179 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
200 201 4.696877 TGAGATTTACGAAGTCACCGTAGA 59.303 41.667 0.00 0.00 43.93 2.59
203 204 1.795768 TACGAAGTCACCGTAGACGT 58.204 50.000 0.85 0.00 43.93 4.34
255 256 2.030363 TGAAAGCACATCGCCGAAAATT 60.030 40.909 0.00 0.00 44.04 1.82
356 357 3.412722 AACCACAGGTTGATTCGCA 57.587 47.368 0.00 0.00 45.07 5.10
358 359 1.686355 ACCACAGGTTGATTCGCAAA 58.314 45.000 0.00 0.00 38.44 3.68
360 361 2.428890 ACCACAGGTTGATTCGCAAAAA 59.571 40.909 0.00 0.00 38.44 1.94
403 404 3.701205 ACTGCCATGTGACATACTTCA 57.299 42.857 0.00 0.00 0.00 3.02
408 409 5.527951 TGCCATGTGACATACTTCAAAAAC 58.472 37.500 0.00 0.00 0.00 2.43
419 420 8.502161 ACATACTTCAAAAACGAATAAACTGC 57.498 30.769 0.00 0.00 0.00 4.40
491 492 4.647424 TGAAAAAGGAAACATTCGCTGT 57.353 36.364 0.00 0.00 40.84 4.40
526 604 6.472686 AGCGACCTACTTAGAAAATCTGAT 57.527 37.500 0.00 0.00 0.00 2.90
578 674 1.376812 GGTGAAAATCGGGGTCGCT 60.377 57.895 0.00 0.00 36.13 4.93
579 675 1.644786 GGTGAAAATCGGGGTCGCTG 61.645 60.000 0.00 0.00 36.13 5.18
581 677 0.672401 TGAAAATCGGGGTCGCTGAC 60.672 55.000 0.00 0.79 36.13 3.51
582 678 1.693083 GAAAATCGGGGTCGCTGACG 61.693 60.000 0.00 0.00 42.01 4.35
583 679 3.659089 AAATCGGGGTCGCTGACGG 62.659 63.158 0.00 0.00 40.63 4.79
590 686 2.335369 GTCGCTGACGGTCACAGT 59.665 61.111 6.76 0.00 40.63 3.55
629 726 4.781934 AGGAAAAATCCCTATGTCCGAAG 58.218 43.478 0.00 0.00 30.92 3.79
649 746 5.175673 CGAAGGAAAAACAAAGAAGAATGGC 59.824 40.000 0.00 0.00 0.00 4.40
680 781 3.066760 AGAGGAAAAGCGGTTTTGACTTG 59.933 43.478 28.28 0.00 35.94 3.16
730 831 4.873129 CGACCAGCGTCCCATCCG 62.873 72.222 0.00 0.00 35.40 4.18
748 849 1.809207 GGCATTTCCCCGACACATG 59.191 57.895 0.00 0.00 0.00 3.21
749 850 1.666209 GGCATTTCCCCGACACATGG 61.666 60.000 0.00 0.00 0.00 3.66
876 977 1.916777 CCCGTAACCACCACCTCCT 60.917 63.158 0.00 0.00 0.00 3.69
878 979 1.214589 CGTAACCACCACCTCCTCG 59.785 63.158 0.00 0.00 0.00 4.63
880 981 2.288025 TAACCACCACCTCCTCGCC 61.288 63.158 0.00 0.00 0.00 5.54
884 985 4.658786 ACCACCTCCTCGCCCCTT 62.659 66.667 0.00 0.00 0.00 3.95
885 986 4.101448 CCACCTCCTCGCCCCTTG 62.101 72.222 0.00 0.00 0.00 3.61
886 987 4.785453 CACCTCCTCGCCCCTTGC 62.785 72.222 0.00 0.00 0.00 4.01
898 999 3.276081 CCTTGCCCCCTTCCCCTT 61.276 66.667 0.00 0.00 0.00 3.95
927 1028 4.021925 GCGTGCTTGTCCCTCCCT 62.022 66.667 0.00 0.00 0.00 4.20
930 1031 1.002011 GTGCTTGTCCCTCCCTTCC 60.002 63.158 0.00 0.00 0.00 3.46
932 1033 1.925972 GCTTGTCCCTCCCTTCCCT 60.926 63.158 0.00 0.00 0.00 4.20
1311 1764 2.733956 TGGTTTGGCTTTGTCTGTTCT 58.266 42.857 0.00 0.00 0.00 3.01
1589 2068 9.316730 GGTTCGGTTCAGTATTTATATGTACAA 57.683 33.333 0.00 0.00 0.00 2.41
1609 2088 4.259356 CAATCTCTTCTCCAATGCTGTCA 58.741 43.478 0.00 0.00 0.00 3.58
1927 2509 7.284489 TGTGTGAATAAACTAGGTTCAAGCTTT 59.716 33.333 0.00 0.00 34.04 3.51
1967 2549 0.744281 CGTTGCCCAAAAGGTTCTGT 59.256 50.000 0.00 0.00 38.26 3.41
2019 2601 8.301002 GGCACAGTAAAACCAAGTTAAATGATA 58.699 33.333 0.00 0.00 0.00 2.15
2174 2757 5.864418 ATTTGGAGATGAATGAATGTGGG 57.136 39.130 0.00 0.00 0.00 4.61
2322 2912 8.125728 ACGGAAACAATTTCAAATAAACACTG 57.874 30.769 3.87 0.00 41.43 3.66
2764 3430 3.775654 GAGGGGCAGAGTGGACCG 61.776 72.222 0.00 0.00 36.52 4.79
2809 3475 5.640147 TCATCAGGTCAGGTAATTGGTTTT 58.360 37.500 0.00 0.00 0.00 2.43
2837 3503 5.393461 GGAGCAACTTGGTTTATCAGAATGG 60.393 44.000 0.00 0.00 36.16 3.16
2857 3523 9.178758 AGAATGGTTATTTCTTCCAGTTATCAC 57.821 33.333 0.00 0.00 34.62 3.06
3019 3688 2.798976 TTCAACAGCTTTGGCATGTC 57.201 45.000 0.00 0.00 41.70 3.06
3948 4914 7.843490 GGCTATGCCGTCTAATAATTAATCA 57.157 36.000 0.00 0.00 39.62 2.57
4163 5129 0.603707 TGACTGTTACAGCTGCCAGC 60.604 55.000 21.86 9.13 42.84 4.85
4413 5399 9.294030 GCTTGTCTTAGAAACATATCCATTTTG 57.706 33.333 0.00 0.00 0.00 2.44
4873 9135 3.433615 GGCACTATAAATCATGACGCCTC 59.566 47.826 0.00 0.00 34.17 4.70
4874 9136 4.310769 GCACTATAAATCATGACGCCTCT 58.689 43.478 0.00 0.00 0.00 3.69
4875 9137 5.470368 GCACTATAAATCATGACGCCTCTA 58.530 41.667 0.00 0.00 0.00 2.43
4876 9138 5.926542 GCACTATAAATCATGACGCCTCTAA 59.073 40.000 0.00 0.00 0.00 2.10
4877 9139 6.591834 GCACTATAAATCATGACGCCTCTAAT 59.408 38.462 0.00 0.00 0.00 1.73
4878 9140 7.118390 GCACTATAAATCATGACGCCTCTAATT 59.882 37.037 0.00 0.00 0.00 1.40
4879 9141 8.993121 CACTATAAATCATGACGCCTCTAATTT 58.007 33.333 0.00 0.00 0.00 1.82
4880 9142 9.209175 ACTATAAATCATGACGCCTCTAATTTC 57.791 33.333 0.00 0.00 0.00 2.17
4881 9143 9.208022 CTATAAATCATGACGCCTCTAATTTCA 57.792 33.333 0.00 0.00 0.00 2.69
4882 9144 6.949352 AAATCATGACGCCTCTAATTTCAT 57.051 33.333 0.00 0.00 0.00 2.57
4883 9145 6.949352 AATCATGACGCCTCTAATTTCATT 57.051 33.333 0.00 0.00 0.00 2.57
4884 9146 8.450578 AAATCATGACGCCTCTAATTTCATTA 57.549 30.769 0.00 0.00 0.00 1.90
4885 9147 8.627208 AATCATGACGCCTCTAATTTCATTAT 57.373 30.769 0.00 0.00 0.00 1.28
4886 9148 7.425577 TCATGACGCCTCTAATTTCATTATG 57.574 36.000 0.00 0.00 0.00 1.90
4887 9149 6.427853 TCATGACGCCTCTAATTTCATTATGG 59.572 38.462 0.00 0.00 0.00 2.74
4888 9150 4.515191 TGACGCCTCTAATTTCATTATGGC 59.485 41.667 0.00 0.00 39.12 4.40
4889 9151 4.718961 ACGCCTCTAATTTCATTATGGCT 58.281 39.130 13.87 4.49 39.73 4.75
4890 9152 5.865085 ACGCCTCTAATTTCATTATGGCTA 58.135 37.500 13.87 0.00 39.73 3.93
4891 9153 6.476378 ACGCCTCTAATTTCATTATGGCTAT 58.524 36.000 13.87 0.00 39.73 2.97
4892 9154 6.595716 ACGCCTCTAATTTCATTATGGCTATC 59.404 38.462 13.87 0.00 39.73 2.08
4893 9155 6.037610 CGCCTCTAATTTCATTATGGCTATCC 59.962 42.308 13.87 0.00 39.73 2.59
4913 9175 9.411189 GCTATCCAGCTAAACTAGGTATATACT 57.589 37.037 12.54 2.10 44.93 2.12
4949 9211 8.925161 TGTGGTTTTCTCTATTTTTCAGTTTG 57.075 30.769 0.00 0.00 0.00 2.93
4950 9212 8.744652 TGTGGTTTTCTCTATTTTTCAGTTTGA 58.255 29.630 0.00 0.00 0.00 2.69
4951 9213 9.020813 GTGGTTTTCTCTATTTTTCAGTTTGAC 57.979 33.333 0.00 0.00 0.00 3.18
4952 9214 8.744652 TGGTTTTCTCTATTTTTCAGTTTGACA 58.255 29.630 0.00 0.00 0.00 3.58
4953 9215 9.020813 GGTTTTCTCTATTTTTCAGTTTGACAC 57.979 33.333 0.00 0.00 0.00 3.67
4954 9216 8.734030 GTTTTCTCTATTTTTCAGTTTGACACG 58.266 33.333 0.00 0.00 0.00 4.49
4955 9217 7.548196 TTCTCTATTTTTCAGTTTGACACGT 57.452 32.000 0.00 0.00 0.00 4.49
4956 9218 8.651391 TTCTCTATTTTTCAGTTTGACACGTA 57.349 30.769 0.00 0.00 0.00 3.57
4957 9219 8.294341 TCTCTATTTTTCAGTTTGACACGTAG 57.706 34.615 0.00 0.00 0.00 3.51
4959 9221 8.428186 TCTATTTTTCAGTTTGACACGTAGTT 57.572 30.769 0.00 0.00 41.61 2.24
4960 9222 8.885722 TCTATTTTTCAGTTTGACACGTAGTTT 58.114 29.630 0.00 0.00 41.61 2.66
4961 9223 9.498307 CTATTTTTCAGTTTGACACGTAGTTTT 57.502 29.630 0.00 0.00 41.61 2.43
4962 9224 7.784790 TTTTTCAGTTTGACACGTAGTTTTC 57.215 32.000 0.00 0.00 41.61 2.29
4963 9225 6.730960 TTTCAGTTTGACACGTAGTTTTCT 57.269 33.333 0.00 0.00 41.61 2.52
4964 9226 5.712217 TCAGTTTGACACGTAGTTTTCTG 57.288 39.130 0.00 0.00 41.61 3.02
4965 9227 4.033587 TCAGTTTGACACGTAGTTTTCTGC 59.966 41.667 0.00 0.00 41.61 4.26
4966 9228 4.034048 CAGTTTGACACGTAGTTTTCTGCT 59.966 41.667 0.00 0.00 41.61 4.24
4967 9229 4.270325 AGTTTGACACGTAGTTTTCTGCTC 59.730 41.667 0.00 0.00 41.61 4.26
4968 9230 2.750948 TGACACGTAGTTTTCTGCTCC 58.249 47.619 0.00 0.00 41.61 4.70
4969 9231 2.067013 GACACGTAGTTTTCTGCTCCC 58.933 52.381 0.00 0.00 41.61 4.30
4970 9232 1.692519 ACACGTAGTTTTCTGCTCCCT 59.307 47.619 0.00 0.00 41.61 4.20
4971 9233 2.104281 ACACGTAGTTTTCTGCTCCCTT 59.896 45.455 0.00 0.00 41.61 3.95
4972 9234 2.737252 CACGTAGTTTTCTGCTCCCTTC 59.263 50.000 0.00 0.00 41.61 3.46
4973 9235 2.289506 ACGTAGTTTTCTGCTCCCTTCC 60.290 50.000 0.00 0.00 37.78 3.46
4974 9236 2.289444 CGTAGTTTTCTGCTCCCTTCCA 60.289 50.000 0.00 0.00 0.00 3.53
4975 9237 3.751518 GTAGTTTTCTGCTCCCTTCCAA 58.248 45.455 0.00 0.00 0.00 3.53
4976 9238 3.532641 AGTTTTCTGCTCCCTTCCAAT 57.467 42.857 0.00 0.00 0.00 3.16
4977 9239 3.425659 AGTTTTCTGCTCCCTTCCAATC 58.574 45.455 0.00 0.00 0.00 2.67
4978 9240 3.075134 AGTTTTCTGCTCCCTTCCAATCT 59.925 43.478 0.00 0.00 0.00 2.40
4979 9241 3.814504 TTTCTGCTCCCTTCCAATCTT 57.185 42.857 0.00 0.00 0.00 2.40
4980 9242 2.795231 TCTGCTCCCTTCCAATCTTG 57.205 50.000 0.00 0.00 0.00 3.02
4981 9243 2.269023 TCTGCTCCCTTCCAATCTTGA 58.731 47.619 0.00 0.00 0.00 3.02
4982 9244 2.644299 TCTGCTCCCTTCCAATCTTGAA 59.356 45.455 0.00 0.00 0.00 2.69
4983 9245 2.751806 CTGCTCCCTTCCAATCTTGAAC 59.248 50.000 0.00 0.00 0.00 3.18
4984 9246 2.376518 TGCTCCCTTCCAATCTTGAACT 59.623 45.455 0.00 0.00 0.00 3.01
4985 9247 3.181429 TGCTCCCTTCCAATCTTGAACTT 60.181 43.478 0.00 0.00 0.00 2.66
4986 9248 3.441922 GCTCCCTTCCAATCTTGAACTTC 59.558 47.826 0.00 0.00 0.00 3.01
4987 9249 4.013050 CTCCCTTCCAATCTTGAACTTCC 58.987 47.826 0.00 0.00 0.00 3.46
4988 9250 3.397618 TCCCTTCCAATCTTGAACTTCCA 59.602 43.478 0.00 0.00 0.00 3.53
4989 9251 3.760684 CCCTTCCAATCTTGAACTTCCAG 59.239 47.826 0.00 0.00 0.00 3.86
4990 9252 4.401925 CCTTCCAATCTTGAACTTCCAGT 58.598 43.478 0.00 0.00 0.00 4.00
4991 9253 4.829492 CCTTCCAATCTTGAACTTCCAGTT 59.171 41.667 0.00 0.00 41.95 3.16
5001 9263 4.307443 GAACTTCCAGTTCCACCTTTTG 57.693 45.455 5.46 0.00 46.68 2.44
5002 9264 3.068165 GAACTTCCAGTTCCACCTTTTGG 59.932 47.826 5.46 0.00 46.68 3.28
5013 9275 3.872511 CACCTTTTGGATAATGCTGCA 57.127 42.857 4.13 4.13 44.07 4.41
5014 9276 4.191033 CACCTTTTGGATAATGCTGCAA 57.809 40.909 6.36 0.00 44.07 4.08
5015 9277 4.567971 CACCTTTTGGATAATGCTGCAAA 58.432 39.130 6.36 0.00 44.07 3.68
5016 9278 4.389687 CACCTTTTGGATAATGCTGCAAAC 59.610 41.667 6.36 0.00 44.07 2.93
5017 9279 4.284234 ACCTTTTGGATAATGCTGCAAACT 59.716 37.500 6.36 0.00 44.07 2.66
5018 9280 5.221702 ACCTTTTGGATAATGCTGCAAACTT 60.222 36.000 6.36 0.00 44.07 2.66
5019 9281 6.014669 ACCTTTTGGATAATGCTGCAAACTTA 60.015 34.615 6.36 1.04 44.07 2.24
5020 9282 6.873076 CCTTTTGGATAATGCTGCAAACTTAA 59.127 34.615 6.36 0.00 44.07 1.85
5021 9283 7.387397 CCTTTTGGATAATGCTGCAAACTTAAA 59.613 33.333 6.36 2.06 44.07 1.52
5022 9284 7.887996 TTTGGATAATGCTGCAAACTTAAAG 57.112 32.000 6.36 0.00 32.41 1.85
5023 9285 5.410067 TGGATAATGCTGCAAACTTAAAGC 58.590 37.500 6.36 0.00 36.18 3.51
5024 9286 4.805719 GGATAATGCTGCAAACTTAAAGCC 59.194 41.667 6.36 1.70 34.70 4.35
5025 9287 2.749280 ATGCTGCAAACTTAAAGCCC 57.251 45.000 6.36 0.00 34.70 5.19
5026 9288 1.703411 TGCTGCAAACTTAAAGCCCT 58.297 45.000 0.00 0.00 34.70 5.19
5027 9289 2.038659 TGCTGCAAACTTAAAGCCCTT 58.961 42.857 0.00 0.00 34.70 3.95
5028 9290 2.433970 TGCTGCAAACTTAAAGCCCTTT 59.566 40.909 0.00 0.00 34.70 3.11
5029 9291 3.059884 GCTGCAAACTTAAAGCCCTTTC 58.940 45.455 0.00 0.00 34.23 2.62
5030 9292 3.492482 GCTGCAAACTTAAAGCCCTTTCA 60.492 43.478 0.00 0.00 34.23 2.69
5031 9293 4.051237 CTGCAAACTTAAAGCCCTTTCAC 58.949 43.478 0.00 0.00 34.23 3.18
5032 9294 3.704061 TGCAAACTTAAAGCCCTTTCACT 59.296 39.130 0.00 0.00 34.23 3.41
5033 9295 4.051237 GCAAACTTAAAGCCCTTTCACTG 58.949 43.478 0.00 0.00 34.23 3.66
5034 9296 4.202111 GCAAACTTAAAGCCCTTTCACTGA 60.202 41.667 0.00 0.00 34.23 3.41
5035 9297 5.509670 GCAAACTTAAAGCCCTTTCACTGAT 60.510 40.000 0.00 0.00 34.23 2.90
5036 9298 6.515832 CAAACTTAAAGCCCTTTCACTGATT 58.484 36.000 0.00 0.00 34.23 2.57
5037 9299 6.731292 AACTTAAAGCCCTTTCACTGATTT 57.269 33.333 0.00 0.00 34.23 2.17
5038 9300 6.089249 ACTTAAAGCCCTTTCACTGATTTG 57.911 37.500 0.00 0.00 34.23 2.32
5039 9301 3.391506 AAAGCCCTTTCACTGATTTGC 57.608 42.857 0.00 0.00 0.00 3.68
5040 9302 1.999648 AGCCCTTTCACTGATTTGCA 58.000 45.000 0.00 0.00 0.00 4.08
5041 9303 2.318908 AGCCCTTTCACTGATTTGCAA 58.681 42.857 0.00 0.00 0.00 4.08
5042 9304 2.901839 AGCCCTTTCACTGATTTGCAAT 59.098 40.909 0.00 0.00 0.00 3.56
5043 9305 2.997986 GCCCTTTCACTGATTTGCAATG 59.002 45.455 0.00 0.00 0.00 2.82
5044 9306 2.997986 CCCTTTCACTGATTTGCAATGC 59.002 45.455 0.00 0.00 0.00 3.56
5045 9307 3.306502 CCCTTTCACTGATTTGCAATGCT 60.307 43.478 6.82 0.00 0.00 3.79
5046 9308 3.924686 CCTTTCACTGATTTGCAATGCTC 59.075 43.478 6.82 0.00 0.00 4.26
5047 9309 4.552355 CTTTCACTGATTTGCAATGCTCA 58.448 39.130 6.82 0.76 0.00 4.26
5048 9310 3.842732 TCACTGATTTGCAATGCTCAG 57.157 42.857 22.64 22.64 40.71 3.35
5049 9311 3.151554 TCACTGATTTGCAATGCTCAGT 58.848 40.909 23.56 23.56 46.92 3.41
5050 9312 3.570975 TCACTGATTTGCAATGCTCAGTT 59.429 39.130 25.35 14.76 44.39 3.16
5051 9313 3.673338 CACTGATTTGCAATGCTCAGTTG 59.327 43.478 25.35 19.43 44.39 3.16
5052 9314 3.319972 ACTGATTTGCAATGCTCAGTTGT 59.680 39.130 23.56 10.67 44.39 3.32
5053 9315 3.904571 TGATTTGCAATGCTCAGTTGTC 58.095 40.909 6.82 0.00 0.00 3.18
5054 9316 3.318557 TGATTTGCAATGCTCAGTTGTCA 59.681 39.130 6.82 0.00 0.00 3.58
5055 9317 3.797451 TTTGCAATGCTCAGTTGTCAA 57.203 38.095 6.82 0.00 0.00 3.18
5056 9318 3.797451 TTGCAATGCTCAGTTGTCAAA 57.203 38.095 6.82 0.00 0.00 2.69
5057 9319 4.325028 TTGCAATGCTCAGTTGTCAAAT 57.675 36.364 6.82 0.00 0.00 2.32
5058 9320 3.904571 TGCAATGCTCAGTTGTCAAATC 58.095 40.909 6.82 0.00 0.00 2.17
5059 9321 3.570975 TGCAATGCTCAGTTGTCAAATCT 59.429 39.130 6.82 0.00 0.00 2.40
5060 9322 4.164294 GCAATGCTCAGTTGTCAAATCTC 58.836 43.478 0.00 0.00 0.00 2.75
5061 9323 4.320714 GCAATGCTCAGTTGTCAAATCTCA 60.321 41.667 0.00 0.00 0.00 3.27
5062 9324 5.621555 GCAATGCTCAGTTGTCAAATCTCAT 60.622 40.000 0.00 0.00 0.00 2.90
5063 9325 5.814764 ATGCTCAGTTGTCAAATCTCATC 57.185 39.130 0.00 0.00 0.00 2.92
5064 9326 4.005650 TGCTCAGTTGTCAAATCTCATCC 58.994 43.478 0.00 0.00 0.00 3.51
5065 9327 4.260170 GCTCAGTTGTCAAATCTCATCCT 58.740 43.478 0.00 0.00 0.00 3.24
5066 9328 5.046376 TGCTCAGTTGTCAAATCTCATCCTA 60.046 40.000 0.00 0.00 0.00 2.94
5067 9329 6.054295 GCTCAGTTGTCAAATCTCATCCTAT 58.946 40.000 0.00 0.00 0.00 2.57
5068 9330 6.541641 GCTCAGTTGTCAAATCTCATCCTATT 59.458 38.462 0.00 0.00 0.00 1.73
5069 9331 7.466996 GCTCAGTTGTCAAATCTCATCCTATTG 60.467 40.741 0.00 0.00 0.00 1.90
5070 9332 7.397221 TCAGTTGTCAAATCTCATCCTATTGT 58.603 34.615 0.00 0.00 0.00 2.71
5071 9333 7.550551 TCAGTTGTCAAATCTCATCCTATTGTC 59.449 37.037 0.00 0.00 0.00 3.18
5072 9334 7.551974 CAGTTGTCAAATCTCATCCTATTGTCT 59.448 37.037 0.00 0.00 0.00 3.41
5073 9335 7.551974 AGTTGTCAAATCTCATCCTATTGTCTG 59.448 37.037 0.00 0.00 0.00 3.51
5074 9336 6.351711 TGTCAAATCTCATCCTATTGTCTGG 58.648 40.000 0.00 0.00 0.00 3.86
5075 9337 5.238214 GTCAAATCTCATCCTATTGTCTGGC 59.762 44.000 0.00 0.00 0.00 4.85
5076 9338 5.104402 TCAAATCTCATCCTATTGTCTGGCA 60.104 40.000 0.00 0.00 0.00 4.92
5077 9339 3.827008 TCTCATCCTATTGTCTGGCAC 57.173 47.619 0.00 0.00 0.00 5.01
5078 9340 3.378512 TCTCATCCTATTGTCTGGCACT 58.621 45.455 0.00 0.00 0.00 4.40
5079 9341 4.546674 TCTCATCCTATTGTCTGGCACTA 58.453 43.478 0.00 0.00 0.00 2.74
5080 9342 5.150715 TCTCATCCTATTGTCTGGCACTAT 58.849 41.667 0.00 0.00 0.00 2.12
5081 9343 6.314917 TCTCATCCTATTGTCTGGCACTATA 58.685 40.000 0.00 0.00 0.00 1.31
5082 9344 6.782494 TCTCATCCTATTGTCTGGCACTATAA 59.218 38.462 0.00 0.00 0.00 0.98
5083 9345 7.290014 TCTCATCCTATTGTCTGGCACTATAAA 59.710 37.037 0.00 0.00 0.00 1.40
5084 9346 7.977818 TCATCCTATTGTCTGGCACTATAAAT 58.022 34.615 0.00 0.00 0.00 1.40
5085 9347 8.097038 TCATCCTATTGTCTGGCACTATAAATC 58.903 37.037 0.00 0.00 0.00 2.17
5086 9348 7.373617 TCCTATTGTCTGGCACTATAAATCA 57.626 36.000 0.00 0.00 0.00 2.57
5087 9349 7.977818 TCCTATTGTCTGGCACTATAAATCAT 58.022 34.615 0.00 0.00 0.00 2.45
5088 9350 7.879677 TCCTATTGTCTGGCACTATAAATCATG 59.120 37.037 0.00 0.00 0.00 3.07
5089 9351 7.879677 CCTATTGTCTGGCACTATAAATCATGA 59.120 37.037 0.00 0.00 0.00 3.07
5090 9352 9.445878 CTATTGTCTGGCACTATAAATCATGAT 57.554 33.333 1.18 1.18 0.00 2.45
5091 9353 7.500720 TTGTCTGGCACTATAAATCATGATG 57.499 36.000 9.46 0.00 0.00 3.07
5092 9354 5.471116 TGTCTGGCACTATAAATCATGATGC 59.529 40.000 9.46 7.82 0.00 3.91
5093 9355 5.005740 TCTGGCACTATAAATCATGATGCC 58.994 41.667 21.93 21.93 44.00 4.40
5094 9356 4.989277 TGGCACTATAAATCATGATGCCT 58.011 39.130 26.37 11.56 44.04 4.75
5193 9456 1.692519 ACACGTAGTTTTCTGCTCCCT 59.307 47.619 0.00 0.00 41.61 4.20
5266 9529 1.746470 TCTCAGCAGCATCAACATGG 58.254 50.000 0.00 0.00 0.00 3.66
5641 9916 2.959507 TAGAGCATTGCAACGAGCTA 57.040 45.000 19.15 9.15 45.94 3.32
6075 10365 9.632638 AATGTAATGATGGCTAACTGTATCTTT 57.367 29.630 0.00 0.00 0.00 2.52
6907 11548 6.214191 TCTTCTGATCTCCATGTGTAACTC 57.786 41.667 0.00 0.00 38.04 3.01
6998 11640 9.131791 GTAATTTGATGGATATGGTGGTTACTT 57.868 33.333 0.00 0.00 0.00 2.24
7331 12273 4.943705 GCATGGGTTCAGAACTTTAGATGA 59.056 41.667 13.13 0.00 0.00 2.92
7335 12277 7.889873 TGGGTTCAGAACTTTAGATGAAAAA 57.110 32.000 13.13 0.00 33.74 1.94
7641 12584 1.616628 AGAAGAAGGCCCGGTGGAT 60.617 57.895 0.00 0.00 0.00 3.41
7680 12627 9.653287 TGTAAGTAACTTAGTCCAAATCTGATG 57.347 33.333 0.00 0.00 0.00 3.07
7707 12657 2.015587 GCTGCCTCAAAGAAGGATGAG 58.984 52.381 0.00 0.00 42.15 2.90
7743 12693 4.202419 TGGTGTATACACTGTTGGCTTCTT 60.202 41.667 29.89 0.00 45.73 2.52
7766 12716 7.387673 TCTTTATGTATATCTGTGAAATGGCCG 59.612 37.037 0.00 0.00 0.00 6.13
7811 12761 6.170506 TGTCAGTTACTGTTTCTCAAGTTGT 58.829 36.000 12.41 0.00 32.61 3.32
7842 12794 1.974236 AGCATAGAGGGGGAAAGATCG 59.026 52.381 0.00 0.00 0.00 3.69
7873 12825 7.492994 CAGTTCCGTTTTATGGGAAAAAGAAAA 59.507 33.333 0.00 0.00 43.52 2.29
7989 12977 6.956202 AAAAGCATAAGATCAATCTCCCAG 57.044 37.500 0.00 0.00 35.76 4.45
8115 13104 0.524604 AAAAGAAAAACGCGTGCGCT 60.525 45.000 14.98 5.32 44.19 5.92
8116 13105 0.524604 AAAGAAAAACGCGTGCGCTT 60.525 45.000 14.98 11.74 44.19 4.68
8137 13126 3.052082 CACACAAGCGGGCAGAGG 61.052 66.667 0.00 0.00 0.00 3.69
8179 13168 7.973048 ACTAGACTTATGGAAACCATCTACA 57.027 36.000 6.55 0.00 40.74 2.74
8180 13169 8.012957 ACTAGACTTATGGAAACCATCTACAG 57.987 38.462 6.55 2.97 40.74 2.74
8181 13170 7.839705 ACTAGACTTATGGAAACCATCTACAGA 59.160 37.037 6.55 0.00 40.74 3.41
8182 13171 7.496346 AGACTTATGGAAACCATCTACAGAA 57.504 36.000 6.55 0.00 40.74 3.02
8183 13172 8.095452 AGACTTATGGAAACCATCTACAGAAT 57.905 34.615 6.55 0.00 40.74 2.40
8184 13173 8.207545 AGACTTATGGAAACCATCTACAGAATC 58.792 37.037 6.55 0.00 40.74 2.52
8185 13174 7.283329 ACTTATGGAAACCATCTACAGAATCC 58.717 38.462 6.55 0.00 40.74 3.01
8186 13175 5.715439 ATGGAAACCATCTACAGAATCCA 57.285 39.130 0.00 0.00 40.74 3.41
8187 13176 4.843728 TGGAAACCATCTACAGAATCCAC 58.156 43.478 0.00 0.00 31.12 4.02
8188 13177 4.200092 GGAAACCATCTACAGAATCCACC 58.800 47.826 0.00 0.00 0.00 4.61
8189 13178 4.080299 GGAAACCATCTACAGAATCCACCT 60.080 45.833 0.00 0.00 0.00 4.00
8190 13179 5.130477 GGAAACCATCTACAGAATCCACCTA 59.870 44.000 0.00 0.00 0.00 3.08
8191 13180 5.615925 AACCATCTACAGAATCCACCTAC 57.384 43.478 0.00 0.00 0.00 3.18
8192 13181 3.637229 ACCATCTACAGAATCCACCTACG 59.363 47.826 0.00 0.00 0.00 3.51
8193 13182 3.005897 CCATCTACAGAATCCACCTACGG 59.994 52.174 0.00 0.00 0.00 4.02
8194 13183 3.657398 TCTACAGAATCCACCTACGGA 57.343 47.619 0.00 0.00 40.07 4.69
8195 13184 3.285484 TCTACAGAATCCACCTACGGAC 58.715 50.000 0.00 0.00 38.07 4.79
8196 13185 2.233305 ACAGAATCCACCTACGGACT 57.767 50.000 0.00 0.00 38.07 3.85
8197 13186 2.537143 ACAGAATCCACCTACGGACTT 58.463 47.619 0.00 0.00 38.07 3.01
8198 13187 2.233922 ACAGAATCCACCTACGGACTTG 59.766 50.000 0.00 0.00 38.07 3.16
8199 13188 2.233922 CAGAATCCACCTACGGACTTGT 59.766 50.000 0.00 0.00 38.07 3.16
8200 13189 2.496470 AGAATCCACCTACGGACTTGTC 59.504 50.000 0.00 0.00 38.07 3.18
8201 13190 2.233305 ATCCACCTACGGACTTGTCT 57.767 50.000 0.61 0.00 38.07 3.41
8202 13191 1.542492 TCCACCTACGGACTTGTCTC 58.458 55.000 0.61 0.00 0.00 3.36
8203 13192 0.531200 CCACCTACGGACTTGTCTCC 59.469 60.000 0.61 0.00 0.00 3.71
8204 13193 0.531200 CACCTACGGACTTGTCTCCC 59.469 60.000 0.61 0.00 0.00 4.30
8205 13194 0.614134 ACCTACGGACTTGTCTCCCC 60.614 60.000 0.61 0.00 0.00 4.81
8206 13195 0.613853 CCTACGGACTTGTCTCCCCA 60.614 60.000 0.61 0.00 0.00 4.96
8207 13196 0.531200 CTACGGACTTGTCTCCCCAC 59.469 60.000 0.61 0.00 0.00 4.61
8208 13197 0.113776 TACGGACTTGTCTCCCCACT 59.886 55.000 0.61 0.00 0.00 4.00
8209 13198 0.113776 ACGGACTTGTCTCCCCACTA 59.886 55.000 0.61 0.00 0.00 2.74
8210 13199 1.273098 ACGGACTTGTCTCCCCACTAT 60.273 52.381 0.61 0.00 0.00 2.12
8211 13200 2.024655 ACGGACTTGTCTCCCCACTATA 60.025 50.000 0.61 0.00 0.00 1.31
8212 13201 2.361438 CGGACTTGTCTCCCCACTATAC 59.639 54.545 0.61 0.00 0.00 1.47
8213 13202 2.699321 GGACTTGTCTCCCCACTATACC 59.301 54.545 0.61 0.00 0.00 2.73
8214 13203 3.630311 GGACTTGTCTCCCCACTATACCT 60.630 52.174 0.61 0.00 0.00 3.08
8215 13204 3.375699 ACTTGTCTCCCCACTATACCTG 58.624 50.000 0.00 0.00 0.00 4.00
8216 13205 2.471815 TGTCTCCCCACTATACCTGG 57.528 55.000 0.00 0.00 0.00 4.45
8217 13206 1.049402 GTCTCCCCACTATACCTGGC 58.951 60.000 0.00 0.00 0.00 4.85
8218 13207 0.105142 TCTCCCCACTATACCTGGCC 60.105 60.000 0.00 0.00 0.00 5.36
8219 13208 0.399949 CTCCCCACTATACCTGGCCA 60.400 60.000 4.71 4.71 0.00 5.36
8220 13209 0.270699 TCCCCACTATACCTGGCCAT 59.729 55.000 5.51 0.00 0.00 4.40
8221 13210 0.693049 CCCCACTATACCTGGCCATC 59.307 60.000 5.51 0.00 0.00 3.51
8222 13211 0.693049 CCCACTATACCTGGCCATCC 59.307 60.000 5.51 0.00 0.00 3.51
8223 13212 0.693049 CCACTATACCTGGCCATCCC 59.307 60.000 5.51 0.00 0.00 3.85
8224 13213 1.734655 CACTATACCTGGCCATCCCT 58.265 55.000 5.51 0.00 0.00 4.20
8225 13214 2.057922 CACTATACCTGGCCATCCCTT 58.942 52.381 5.51 0.00 0.00 3.95
8226 13215 2.057922 ACTATACCTGGCCATCCCTTG 58.942 52.381 5.51 0.00 0.00 3.61
8228 13217 1.363530 ATACCTGGCCATCCCTTGGG 61.364 60.000 5.51 4.26 46.55 4.12
8233 13222 4.847367 GCCATCCCTTGGGCTGGG 62.847 72.222 24.87 15.37 46.55 4.45
8234 13223 4.847367 CCATCCCTTGGGCTGGGC 62.847 72.222 18.33 0.00 44.23 5.36
8252 13241 4.680237 CTGACCAAGCCCGACGCA 62.680 66.667 0.00 0.00 41.38 5.24
8253 13242 4.680237 TGACCAAGCCCGACGCAG 62.680 66.667 0.00 0.00 41.38 5.18
8254 13243 4.373116 GACCAAGCCCGACGCAGA 62.373 66.667 0.00 0.00 41.38 4.26
8255 13244 3.876589 GACCAAGCCCGACGCAGAA 62.877 63.158 0.00 0.00 41.38 3.02
8256 13245 2.668212 CCAAGCCCGACGCAGAAA 60.668 61.111 0.00 0.00 41.38 2.52
8257 13246 2.040544 CCAAGCCCGACGCAGAAAT 61.041 57.895 0.00 0.00 41.38 2.17
8258 13247 1.425428 CAAGCCCGACGCAGAAATC 59.575 57.895 0.00 0.00 41.38 2.17
8259 13248 1.745489 AAGCCCGACGCAGAAATCC 60.745 57.895 0.00 0.00 41.38 3.01
8260 13249 3.202706 GCCCGACGCAGAAATCCC 61.203 66.667 0.00 0.00 37.47 3.85
8261 13250 2.267642 CCCGACGCAGAAATCCCA 59.732 61.111 0.00 0.00 0.00 4.37
8262 13251 1.815421 CCCGACGCAGAAATCCCAG 60.815 63.158 0.00 0.00 0.00 4.45
8263 13252 1.815421 CCGACGCAGAAATCCCAGG 60.815 63.158 0.00 0.00 0.00 4.45
8264 13253 2.464459 CGACGCAGAAATCCCAGGC 61.464 63.158 0.00 0.00 0.00 4.85
8265 13254 1.078143 GACGCAGAAATCCCAGGCT 60.078 57.895 0.00 0.00 0.00 4.58
8266 13255 1.078143 ACGCAGAAATCCCAGGCTC 60.078 57.895 0.00 0.00 0.00 4.70
8267 13256 2.176273 CGCAGAAATCCCAGGCTCG 61.176 63.158 0.00 0.00 0.00 5.03
8268 13257 1.821332 GCAGAAATCCCAGGCTCGG 60.821 63.158 0.00 0.00 0.00 4.63
8269 13258 1.821332 CAGAAATCCCAGGCTCGGC 60.821 63.158 0.00 0.00 0.00 5.54
8293 13282 2.441532 CGGGAGTCGGGCCTAGAA 60.442 66.667 0.84 0.00 34.75 2.10
8294 13283 2.056223 CGGGAGTCGGGCCTAGAAA 61.056 63.158 0.84 0.00 34.75 2.52
8295 13284 1.400530 CGGGAGTCGGGCCTAGAAAT 61.401 60.000 0.84 0.00 34.75 2.17
8296 13285 0.393448 GGGAGTCGGGCCTAGAAATC 59.607 60.000 0.84 4.87 0.00 2.17
8297 13286 1.120530 GGAGTCGGGCCTAGAAATCA 58.879 55.000 0.84 0.00 0.00 2.57
8298 13287 1.069358 GGAGTCGGGCCTAGAAATCAG 59.931 57.143 0.84 0.00 0.00 2.90
8299 13288 1.069358 GAGTCGGGCCTAGAAATCAGG 59.931 57.143 0.84 0.00 36.16 3.86
8306 13295 1.685148 CCTAGAAATCAGGCCCAAGC 58.315 55.000 0.00 0.00 38.76 4.01
8318 13307 4.659172 CCAAGCCTGGCCCGTCAA 62.659 66.667 16.57 0.00 35.39 3.18
8319 13308 3.365265 CAAGCCTGGCCCGTCAAC 61.365 66.667 16.57 0.00 0.00 3.18
8322 13311 4.382320 GCCTGGCCCGTCAACGTA 62.382 66.667 7.66 0.00 37.74 3.57
8323 13312 2.344500 CCTGGCCCGTCAACGTAA 59.656 61.111 0.00 0.00 37.74 3.18
8324 13313 1.301874 CCTGGCCCGTCAACGTAAA 60.302 57.895 0.00 0.00 37.74 2.01
8325 13314 0.885596 CCTGGCCCGTCAACGTAAAA 60.886 55.000 0.00 0.00 37.74 1.52
8326 13315 0.515564 CTGGCCCGTCAACGTAAAAG 59.484 55.000 0.00 0.00 37.74 2.27
8327 13316 1.208358 GGCCCGTCAACGTAAAAGC 59.792 57.895 0.00 0.00 37.74 3.51
8328 13317 1.208358 GCCCGTCAACGTAAAAGCC 59.792 57.895 1.48 0.00 37.74 4.35
8329 13318 1.871077 CCCGTCAACGTAAAAGCCC 59.129 57.895 1.48 0.00 37.74 5.19
8330 13319 0.885596 CCCGTCAACGTAAAAGCCCA 60.886 55.000 1.48 0.00 37.74 5.36
8331 13320 1.161843 CCGTCAACGTAAAAGCCCAT 58.838 50.000 1.48 0.00 37.74 4.00
8332 13321 1.538075 CCGTCAACGTAAAAGCCCATT 59.462 47.619 1.48 0.00 37.74 3.16
8333 13322 2.743126 CCGTCAACGTAAAAGCCCATTA 59.257 45.455 1.48 0.00 37.74 1.90
8334 13323 3.181514 CCGTCAACGTAAAAGCCCATTAG 60.182 47.826 1.48 0.00 37.74 1.73
8335 13324 3.181514 CGTCAACGTAAAAGCCCATTAGG 60.182 47.826 0.00 0.00 34.67 2.69
8354 13343 3.839432 CTCGGGCCGGGTCTCTTC 61.839 72.222 27.98 0.00 0.00 2.87
8357 13346 3.703127 GGGCCGGGTCTCTTCGTT 61.703 66.667 2.18 0.00 0.00 3.85
8358 13347 2.353610 GGGCCGGGTCTCTTCGTTA 61.354 63.158 2.18 0.00 0.00 3.18
8359 13348 1.593265 GGCCGGGTCTCTTCGTTAA 59.407 57.895 2.18 0.00 0.00 2.01
8360 13349 0.738762 GGCCGGGTCTCTTCGTTAAC 60.739 60.000 2.18 0.00 0.00 2.01
8361 13350 0.245813 GCCGGGTCTCTTCGTTAACT 59.754 55.000 2.18 0.00 0.00 2.24
8362 13351 1.735038 GCCGGGTCTCTTCGTTAACTC 60.735 57.143 2.18 0.00 0.00 3.01
8363 13352 1.542915 CCGGGTCTCTTCGTTAACTCA 59.457 52.381 3.71 0.00 0.00 3.41
8364 13353 2.593257 CGGGTCTCTTCGTTAACTCAC 58.407 52.381 3.71 0.00 0.00 3.51
8365 13354 2.030540 CGGGTCTCTTCGTTAACTCACA 60.031 50.000 3.71 0.00 0.00 3.58
8366 13355 3.551454 CGGGTCTCTTCGTTAACTCACAA 60.551 47.826 3.71 0.00 0.00 3.33
8367 13356 4.374399 GGGTCTCTTCGTTAACTCACAAA 58.626 43.478 3.71 0.00 0.00 2.83
8368 13357 4.995487 GGGTCTCTTCGTTAACTCACAAAT 59.005 41.667 3.71 0.00 0.00 2.32
8369 13358 6.161381 GGGTCTCTTCGTTAACTCACAAATA 58.839 40.000 3.71 0.00 0.00 1.40
8370 13359 6.817140 GGGTCTCTTCGTTAACTCACAAATAT 59.183 38.462 3.71 0.00 0.00 1.28
8371 13360 7.201530 GGGTCTCTTCGTTAACTCACAAATATG 60.202 40.741 3.71 0.00 0.00 1.78
8372 13361 7.544566 GGTCTCTTCGTTAACTCACAAATATGA 59.455 37.037 3.71 0.00 0.00 2.15
8373 13362 8.373992 GTCTCTTCGTTAACTCACAAATATGAC 58.626 37.037 3.71 0.00 0.00 3.06
8374 13363 7.272731 TCTCTTCGTTAACTCACAAATATGACG 59.727 37.037 3.71 0.00 0.00 4.35
8375 13364 6.309494 TCTTCGTTAACTCACAAATATGACGG 59.691 38.462 3.71 0.00 0.00 4.79
8376 13365 4.865925 TCGTTAACTCACAAATATGACGGG 59.134 41.667 3.71 0.00 0.00 5.28
8377 13366 4.493545 CGTTAACTCACAAATATGACGGGC 60.494 45.833 3.71 0.00 0.00 6.13
8378 13367 2.038387 ACTCACAAATATGACGGGCC 57.962 50.000 0.00 0.00 0.00 5.80
8379 13368 1.308998 CTCACAAATATGACGGGCCC 58.691 55.000 13.57 13.57 0.00 5.80
8380 13369 0.462937 TCACAAATATGACGGGCCCG 60.463 55.000 42.17 42.17 46.03 6.13
8381 13370 1.153046 ACAAATATGACGGGCCCGG 60.153 57.895 44.99 27.73 44.69 5.73
8382 13371 1.896660 CAAATATGACGGGCCCGGG 60.897 63.158 44.99 22.37 44.69 5.73
8383 13372 3.785122 AAATATGACGGGCCCGGGC 62.785 63.158 44.99 38.57 44.69 6.13
8419 13408 3.936564 CCTTCAGGCTCAATATCTAGGC 58.063 50.000 3.39 3.39 38.50 3.93
8420 13409 3.307339 CCTTCAGGCTCAATATCTAGGCC 60.307 52.174 0.00 0.00 42.74 5.19
8421 13410 2.260822 TCAGGCTCAATATCTAGGCCC 58.739 52.381 0.00 0.00 43.36 5.80
8422 13411 1.980765 CAGGCTCAATATCTAGGCCCA 59.019 52.381 0.00 0.00 43.36 5.36
8423 13412 2.027377 CAGGCTCAATATCTAGGCCCAG 60.027 54.545 0.00 0.00 43.36 4.45
8424 13413 1.280421 GGCTCAATATCTAGGCCCAGG 59.720 57.143 0.00 0.00 37.12 4.45
8425 13414 1.339535 GCTCAATATCTAGGCCCAGGC 60.340 57.143 0.00 0.00 41.06 4.85
8436 13425 3.970410 CCCAGGCCCAGCTTGTGA 61.970 66.667 0.00 0.00 33.72 3.58
8437 13426 2.360852 CCAGGCCCAGCTTGTGAG 60.361 66.667 0.00 0.00 33.72 3.51
8447 13436 3.244105 CTTGTGAGCAACGTCGGG 58.756 61.111 0.00 0.00 0.00 5.14
8448 13437 2.954753 CTTGTGAGCAACGTCGGGC 61.955 63.158 0.00 0.00 0.00 6.13
8449 13438 4.980805 TGTGAGCAACGTCGGGCC 62.981 66.667 0.00 0.00 0.00 5.80
8465 13454 3.782443 CCGGGTCGGGCTAAGCTT 61.782 66.667 3.48 3.48 44.15 3.74
8466 13455 2.267961 CGGGTCGGGCTAAGCTTT 59.732 61.111 3.20 0.00 0.00 3.51
8467 13456 1.376812 CGGGTCGGGCTAAGCTTTT 60.377 57.895 3.20 0.00 0.00 2.27
8468 13457 0.958876 CGGGTCGGGCTAAGCTTTTT 60.959 55.000 3.20 0.00 0.00 1.94
8482 13471 4.911901 TTTTTGGGTCGGGTCAGG 57.088 55.556 0.00 0.00 0.00 3.86
8483 13472 1.924352 TTTTTGGGTCGGGTCAGGT 59.076 52.632 0.00 0.00 0.00 4.00
8484 13473 0.179012 TTTTTGGGTCGGGTCAGGTC 60.179 55.000 0.00 0.00 0.00 3.85
8485 13474 2.386064 TTTTGGGTCGGGTCAGGTCG 62.386 60.000 0.00 0.00 0.00 4.79
8507 13496 2.110420 GCCCGTGGCCAGGTATAC 59.890 66.667 23.21 6.59 44.06 1.47
8508 13497 2.440817 GCCCGTGGCCAGGTATACT 61.441 63.158 23.21 0.00 44.06 2.12
8509 13498 1.746517 CCCGTGGCCAGGTATACTC 59.253 63.158 23.21 0.00 0.00 2.59
8510 13499 1.746517 CCGTGGCCAGGTATACTCC 59.253 63.158 23.21 0.00 0.00 3.85
8511 13500 1.746517 CGTGGCCAGGTATACTCCC 59.253 63.158 17.47 0.00 0.00 4.30
8512 13501 1.755393 CGTGGCCAGGTATACTCCCC 61.755 65.000 17.47 0.00 0.00 4.81
8513 13502 0.693092 GTGGCCAGGTATACTCCCCA 60.693 60.000 5.11 2.37 0.00 4.96
8514 13503 0.693092 TGGCCAGGTATACTCCCCAC 60.693 60.000 0.00 0.00 0.00 4.61
8515 13504 0.693092 GGCCAGGTATACTCCCCACA 60.693 60.000 0.00 0.00 0.00 4.17
8516 13505 1.209621 GCCAGGTATACTCCCCACAA 58.790 55.000 2.25 0.00 0.00 3.33
8517 13506 1.562475 GCCAGGTATACTCCCCACAAA 59.438 52.381 2.25 0.00 0.00 2.83
8518 13507 2.174854 GCCAGGTATACTCCCCACAAAT 59.825 50.000 2.25 0.00 0.00 2.32
8519 13508 3.372675 GCCAGGTATACTCCCCACAAATT 60.373 47.826 2.25 0.00 0.00 1.82
8520 13509 4.207165 CCAGGTATACTCCCCACAAATTG 58.793 47.826 2.25 0.00 0.00 2.32
8521 13510 4.207165 CAGGTATACTCCCCACAAATTGG 58.793 47.826 2.25 0.00 46.47 3.16
8522 13511 3.856206 AGGTATACTCCCCACAAATTGGT 59.144 43.478 2.25 0.00 45.25 3.67
8523 13512 4.293901 AGGTATACTCCCCACAAATTGGTT 59.706 41.667 2.25 0.00 45.25 3.67
8524 13513 5.020795 GGTATACTCCCCACAAATTGGTTT 58.979 41.667 2.25 0.00 45.25 3.27
8525 13514 5.482526 GGTATACTCCCCACAAATTGGTTTT 59.517 40.000 2.25 0.00 45.25 2.43
8526 13515 5.738619 ATACTCCCCACAAATTGGTTTTC 57.261 39.130 0.00 0.00 45.25 2.29
8527 13516 2.703536 ACTCCCCACAAATTGGTTTTCC 59.296 45.455 0.00 0.00 45.25 3.13
8528 13517 2.972021 CTCCCCACAAATTGGTTTTCCT 59.028 45.455 0.00 0.00 45.25 3.36
8529 13518 2.969262 TCCCCACAAATTGGTTTTCCTC 59.031 45.455 0.00 0.00 45.25 3.71
8530 13519 2.038426 CCCCACAAATTGGTTTTCCTCC 59.962 50.000 0.00 0.00 45.25 4.30
8531 13520 2.972021 CCCACAAATTGGTTTTCCTCCT 59.028 45.455 0.00 0.00 45.25 3.69
8532 13521 3.244181 CCCACAAATTGGTTTTCCTCCTG 60.244 47.826 0.00 0.00 45.25 3.86
8533 13522 3.640967 CCACAAATTGGTTTTCCTCCTGA 59.359 43.478 0.00 0.00 41.10 3.86
8534 13523 4.284234 CCACAAATTGGTTTTCCTCCTGAT 59.716 41.667 0.00 0.00 41.10 2.90
8535 13524 5.221702 CCACAAATTGGTTTTCCTCCTGATT 60.222 40.000 0.00 0.00 41.10 2.57
8536 13525 6.290605 CACAAATTGGTTTTCCTCCTGATTT 58.709 36.000 0.00 0.00 41.38 2.17
8537 13526 6.424812 CACAAATTGGTTTTCCTCCTGATTTC 59.575 38.462 0.00 0.00 41.38 2.17
8538 13527 5.745312 AATTGGTTTTCCTCCTGATTTCC 57.255 39.130 0.00 0.00 41.38 3.13
8539 13528 3.893753 TGGTTTTCCTCCTGATTTCCA 57.106 42.857 0.00 0.00 41.38 3.53
8540 13529 3.766545 TGGTTTTCCTCCTGATTTCCAG 58.233 45.455 0.00 0.00 40.63 3.86
8541 13530 3.140144 TGGTTTTCCTCCTGATTTCCAGT 59.860 43.478 0.00 0.00 39.94 4.00
8542 13531 3.507622 GGTTTTCCTCCTGATTTCCAGTG 59.492 47.826 0.00 0.00 37.85 3.66
8543 13532 3.439857 TTTCCTCCTGATTTCCAGTGG 57.560 47.619 1.40 1.40 41.33 4.00
8544 13533 2.044793 TCCTCCTGATTTCCAGTGGT 57.955 50.000 9.54 0.00 41.33 4.16
8545 13534 1.630369 TCCTCCTGATTTCCAGTGGTG 59.370 52.381 9.54 0.00 41.33 4.17
8546 13535 1.340405 CCTCCTGATTTCCAGTGGTGG 60.340 57.143 9.54 3.73 46.63 4.61
8547 13536 0.038166 TCCTGATTTCCAGTGGTGGC 59.962 55.000 9.54 0.00 44.60 5.01
8548 13537 0.967380 CCTGATTTCCAGTGGTGGCC 60.967 60.000 9.54 0.00 44.60 5.36
8549 13538 0.967380 CTGATTTCCAGTGGTGGCCC 60.967 60.000 9.54 0.00 44.60 5.80
8550 13539 1.682344 GATTTCCAGTGGTGGCCCC 60.682 63.158 9.54 0.85 44.60 5.80
8551 13540 3.238197 ATTTCCAGTGGTGGCCCCC 62.238 63.158 9.54 0.00 44.60 5.40
8552 13541 4.938756 TTCCAGTGGTGGCCCCCT 62.939 66.667 9.54 0.99 44.60 4.79
8555 13544 3.721706 CAGTGGTGGCCCCCTCTC 61.722 72.222 5.79 0.00 0.00 3.20
8560 13549 2.941583 GTGGCCCCCTCTCCCTTT 60.942 66.667 0.00 0.00 0.00 3.11
8561 13550 2.614013 TGGCCCCCTCTCCCTTTC 60.614 66.667 0.00 0.00 0.00 2.62
8562 13551 2.614013 GGCCCCCTCTCCCTTTCA 60.614 66.667 0.00 0.00 0.00 2.69
8563 13552 2.009302 GGCCCCCTCTCCCTTTCAT 61.009 63.158 0.00 0.00 0.00 2.57
8564 13553 1.584717 GGCCCCCTCTCCCTTTCATT 61.585 60.000 0.00 0.00 0.00 2.57
8565 13554 0.336392 GCCCCCTCTCCCTTTCATTT 59.664 55.000 0.00 0.00 0.00 2.32
8566 13555 1.273267 GCCCCCTCTCCCTTTCATTTT 60.273 52.381 0.00 0.00 0.00 1.82
8567 13556 2.739943 CCCCCTCTCCCTTTCATTTTC 58.260 52.381 0.00 0.00 0.00 2.29
8568 13557 2.042979 CCCCCTCTCCCTTTCATTTTCA 59.957 50.000 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 2.953453 AGGGTAGGATATGCGTGTGTA 58.047 47.619 0.00 0.00 0.00 2.90
130 131 2.679082 GAGGTGCTCATAAGGGTAGGA 58.321 52.381 0.00 0.00 0.00 2.94
132 133 1.341531 CGGAGGTGCTCATAAGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
142 143 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
149 150 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
154 155 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
178 179 5.027099 GTCTACGGTGACTTCGTAAATCTC 58.973 45.833 0.00 0.00 41.62 2.75
227 228 1.202114 GCGATGTGCTTTCAATGGGAA 59.798 47.619 0.00 0.00 41.73 3.97
233 234 0.947960 TTTCGGCGATGTGCTTTCAA 59.052 45.000 11.76 0.00 45.43 2.69
255 256 7.719193 TCGCATTATTCCTGGATTTATTTCAGA 59.281 33.333 0.00 0.00 0.00 3.27
363 364 7.779798 TGGCAGTTTTATATTTAAGAGATGGCT 59.220 33.333 0.00 0.00 0.00 4.75
364 365 7.940850 TGGCAGTTTTATATTTAAGAGATGGC 58.059 34.615 0.00 0.00 0.00 4.40
403 404 8.649973 TTTAACATGGCAGTTTATTCGTTTTT 57.350 26.923 0.00 0.00 33.07 1.94
463 464 6.401581 GCGAATGTTTCCTTTTTCAAACACAA 60.402 34.615 0.00 0.00 43.48 3.33
465 466 5.290885 AGCGAATGTTTCCTTTTTCAAACAC 59.709 36.000 0.00 0.00 43.48 3.32
466 467 5.290643 CAGCGAATGTTTCCTTTTTCAAACA 59.709 36.000 0.05 0.05 44.48 2.83
467 468 5.290885 ACAGCGAATGTTTCCTTTTTCAAAC 59.709 36.000 0.00 0.00 39.96 2.93
468 469 5.415221 ACAGCGAATGTTTCCTTTTTCAAA 58.585 33.333 0.00 0.00 39.96 2.69
494 495 7.870509 TTCTAAGTAGGTCGCTATAGACAAA 57.129 36.000 3.21 0.00 42.62 2.83
506 507 6.258947 GCCACATCAGATTTTCTAAGTAGGTC 59.741 42.308 0.00 0.00 0.00 3.85
510 511 6.595326 CACTGCCACATCAGATTTTCTAAGTA 59.405 38.462 0.00 0.00 37.51 2.24
578 674 4.025563 CGAAAATGTTAACTGTGACCGTCA 60.026 41.667 7.22 0.00 0.00 4.35
579 675 4.451557 CGAAAATGTTAACTGTGACCGTC 58.548 43.478 7.22 0.00 0.00 4.79
581 677 3.495377 TCCGAAAATGTTAACTGTGACCG 59.505 43.478 7.22 3.95 0.00 4.79
582 678 5.427036 TTCCGAAAATGTTAACTGTGACC 57.573 39.130 7.22 0.00 0.00 4.02
583 679 7.043656 CCTTTTTCCGAAAATGTTAACTGTGAC 60.044 37.037 7.12 0.00 34.45 3.67
586 682 7.102847 TCCTTTTTCCGAAAATGTTAACTGT 57.897 32.000 7.12 0.00 34.45 3.55
629 726 6.676237 TTTGCCATTCTTCTTTGTTTTTCC 57.324 33.333 0.00 0.00 0.00 3.13
633 730 6.355747 TGGAATTTGCCATTCTTCTTTGTTT 58.644 32.000 5.87 0.00 31.66 2.83
635 732 5.549742 TGGAATTTGCCATTCTTCTTTGT 57.450 34.783 5.87 0.00 31.66 2.83
637 734 6.423776 TCTTGGAATTTGCCATTCTTCTTT 57.576 33.333 5.87 0.00 37.86 2.52
639 736 4.465305 CCTCTTGGAATTTGCCATTCTTCT 59.535 41.667 5.87 0.00 37.86 2.85
640 737 4.463891 TCCTCTTGGAATTTGCCATTCTTC 59.536 41.667 5.87 0.00 39.87 2.87
730 831 1.666209 CCATGTGTCGGGGAAATGCC 61.666 60.000 0.00 0.00 0.00 4.40
748 849 4.593864 GAGGTGGCGCGGATCTCC 62.594 72.222 8.83 0.00 0.00 3.71
749 850 3.838271 TGAGGTGGCGCGGATCTC 61.838 66.667 8.83 10.60 0.00 2.75
858 959 1.896122 GAGGAGGTGGTGGTTACGGG 61.896 65.000 0.00 0.00 0.00 5.28
881 982 3.276081 AAGGGGAAGGGGGCAAGG 61.276 66.667 0.00 0.00 0.00 3.61
882 983 2.360585 GAAGGGGAAGGGGGCAAG 59.639 66.667 0.00 0.00 0.00 4.01
883 984 3.272847 GGAAGGGGAAGGGGGCAA 61.273 66.667 0.00 0.00 0.00 4.52
884 985 3.928172 ATGGAAGGGGAAGGGGGCA 62.928 63.158 0.00 0.00 0.00 5.36
885 986 3.029981 ATGGAAGGGGAAGGGGGC 61.030 66.667 0.00 0.00 0.00 5.80
886 987 2.704424 CCATGGAAGGGGAAGGGGG 61.704 68.421 5.56 0.00 31.11 5.40
891 992 1.620259 GATGGCCATGGAAGGGGAA 59.380 57.895 26.56 0.00 38.99 3.97
893 994 2.203394 CGATGGCCATGGAAGGGG 60.203 66.667 26.56 0.00 38.99 4.79
927 1028 0.908180 GTTTCTCGGGGGAGAGGGAA 60.908 60.000 0.00 0.00 38.71 3.97
930 1031 2.368011 GGGTTTCTCGGGGGAGAGG 61.368 68.421 0.00 0.00 38.71 3.69
932 1033 0.032416 CTAGGGTTTCTCGGGGGAGA 60.032 60.000 0.00 0.00 0.00 3.71
1589 2068 4.564782 TTGACAGCATTGGAGAAGAGAT 57.435 40.909 0.00 0.00 0.00 2.75
1598 2077 6.992063 ACTAACTAGAATTGACAGCATTGG 57.008 37.500 0.00 0.00 0.00 3.16
1772 2311 3.539604 CAGCCTAAATTCCAGGAGACAG 58.460 50.000 9.69 0.00 34.91 3.51
1927 2509 2.417239 GCGTTCGATTGGTTGTTGGATA 59.583 45.455 0.00 0.00 0.00 2.59
1967 2549 1.748879 GGACAGCATTAGCCGCCAA 60.749 57.895 0.00 0.00 43.56 4.52
2174 2757 0.251354 TCTGGCAATCCTGAGAGCAC 59.749 55.000 0.00 0.00 35.69 4.40
2282 2872 1.964373 CCGTCAAACCCCTTCCACG 60.964 63.158 0.00 0.00 0.00 4.94
2764 3430 4.324267 AGCTGTCAAGTGTATACCAAACC 58.676 43.478 0.00 0.00 0.00 3.27
2809 3475 6.480763 TCTGATAAACCAAGTTGCTCCATAA 58.519 36.000 0.00 0.00 0.00 1.90
3115 3789 2.754946 TAGAGCCCTAAAACACACCG 57.245 50.000 0.00 0.00 0.00 4.94
3948 4914 8.037758 GTCATTCAGGTCTTATATCCGAATCAT 58.962 37.037 0.00 0.00 30.81 2.45
4638 5630 2.125512 CCAGCTCCCGTTCGAAGG 60.126 66.667 10.85 10.85 0.00 3.46
4923 9185 9.533253 CAAACTGAAAAATAGAGAAAACCACAT 57.467 29.630 0.00 0.00 0.00 3.21
4924 9186 8.744652 TCAAACTGAAAAATAGAGAAAACCACA 58.255 29.630 0.00 0.00 0.00 4.17
4925 9187 9.020813 GTCAAACTGAAAAATAGAGAAAACCAC 57.979 33.333 0.00 0.00 0.00 4.16
4926 9188 8.744652 TGTCAAACTGAAAAATAGAGAAAACCA 58.255 29.630 0.00 0.00 0.00 3.67
4927 9189 9.020813 GTGTCAAACTGAAAAATAGAGAAAACC 57.979 33.333 0.00 0.00 0.00 3.27
4928 9190 8.734030 CGTGTCAAACTGAAAAATAGAGAAAAC 58.266 33.333 0.00 0.00 0.00 2.43
4929 9191 8.455682 ACGTGTCAAACTGAAAAATAGAGAAAA 58.544 29.630 0.00 0.00 0.00 2.29
4930 9192 7.981142 ACGTGTCAAACTGAAAAATAGAGAAA 58.019 30.769 0.00 0.00 0.00 2.52
4931 9193 7.548196 ACGTGTCAAACTGAAAAATAGAGAA 57.452 32.000 0.00 0.00 0.00 2.87
4932 9194 7.924412 ACTACGTGTCAAACTGAAAAATAGAGA 59.076 33.333 0.00 0.00 0.00 3.10
4933 9195 8.073355 ACTACGTGTCAAACTGAAAAATAGAG 57.927 34.615 0.00 0.00 0.00 2.43
4934 9196 8.428186 AACTACGTGTCAAACTGAAAAATAGA 57.572 30.769 0.00 0.00 0.00 1.98
4935 9197 9.498307 AAAACTACGTGTCAAACTGAAAAATAG 57.502 29.630 0.00 0.00 0.00 1.73
4936 9198 9.493206 GAAAACTACGTGTCAAACTGAAAAATA 57.507 29.630 0.00 0.00 0.00 1.40
4937 9199 8.241367 AGAAAACTACGTGTCAAACTGAAAAAT 58.759 29.630 0.00 0.00 0.00 1.82
4938 9200 7.535940 CAGAAAACTACGTGTCAAACTGAAAAA 59.464 33.333 0.00 0.00 0.00 1.94
4939 9201 7.018826 CAGAAAACTACGTGTCAAACTGAAAA 58.981 34.615 0.00 0.00 0.00 2.29
4940 9202 6.539324 CAGAAAACTACGTGTCAAACTGAAA 58.461 36.000 0.00 0.00 0.00 2.69
4941 9203 5.446741 GCAGAAAACTACGTGTCAAACTGAA 60.447 40.000 0.00 0.00 0.00 3.02
4942 9204 4.033587 GCAGAAAACTACGTGTCAAACTGA 59.966 41.667 0.00 0.00 0.00 3.41
4943 9205 4.034048 AGCAGAAAACTACGTGTCAAACTG 59.966 41.667 0.00 2.86 0.00 3.16
4944 9206 4.189231 AGCAGAAAACTACGTGTCAAACT 58.811 39.130 0.00 0.00 0.00 2.66
4945 9207 4.515432 GAGCAGAAAACTACGTGTCAAAC 58.485 43.478 0.00 0.00 0.00 2.93
4946 9208 3.558418 GGAGCAGAAAACTACGTGTCAAA 59.442 43.478 0.00 0.00 0.00 2.69
4947 9209 3.128349 GGAGCAGAAAACTACGTGTCAA 58.872 45.455 0.00 0.00 0.00 3.18
4948 9210 2.547218 GGGAGCAGAAAACTACGTGTCA 60.547 50.000 0.00 0.00 0.00 3.58
4949 9211 2.067013 GGGAGCAGAAAACTACGTGTC 58.933 52.381 0.00 0.00 0.00 3.67
4950 9212 1.692519 AGGGAGCAGAAAACTACGTGT 59.307 47.619 0.00 0.00 0.00 4.49
4951 9213 2.457366 AGGGAGCAGAAAACTACGTG 57.543 50.000 0.00 0.00 0.00 4.49
4952 9214 2.289506 GGAAGGGAGCAGAAAACTACGT 60.290 50.000 0.00 0.00 0.00 3.57
4953 9215 2.289444 TGGAAGGGAGCAGAAAACTACG 60.289 50.000 0.00 0.00 0.00 3.51
4954 9216 3.418684 TGGAAGGGAGCAGAAAACTAC 57.581 47.619 0.00 0.00 0.00 2.73
4955 9217 4.289672 AGATTGGAAGGGAGCAGAAAACTA 59.710 41.667 0.00 0.00 0.00 2.24
4956 9218 3.075134 AGATTGGAAGGGAGCAGAAAACT 59.925 43.478 0.00 0.00 0.00 2.66
4957 9219 3.425659 AGATTGGAAGGGAGCAGAAAAC 58.574 45.455 0.00 0.00 0.00 2.43
4958 9220 3.814504 AGATTGGAAGGGAGCAGAAAA 57.185 42.857 0.00 0.00 0.00 2.29
4959 9221 3.074390 TCAAGATTGGAAGGGAGCAGAAA 59.926 43.478 0.00 0.00 0.00 2.52
4960 9222 2.644299 TCAAGATTGGAAGGGAGCAGAA 59.356 45.455 0.00 0.00 0.00 3.02
4961 9223 2.269023 TCAAGATTGGAAGGGAGCAGA 58.731 47.619 0.00 0.00 0.00 4.26
4962 9224 2.751806 GTTCAAGATTGGAAGGGAGCAG 59.248 50.000 0.00 0.00 0.00 4.24
4963 9225 2.376518 AGTTCAAGATTGGAAGGGAGCA 59.623 45.455 0.00 0.00 0.00 4.26
4964 9226 3.078891 AGTTCAAGATTGGAAGGGAGC 57.921 47.619 0.00 0.00 0.00 4.70
4965 9227 4.013050 GGAAGTTCAAGATTGGAAGGGAG 58.987 47.826 5.01 0.00 0.00 4.30
4966 9228 3.397618 TGGAAGTTCAAGATTGGAAGGGA 59.602 43.478 5.01 0.00 0.00 4.20
4967 9229 3.760684 CTGGAAGTTCAAGATTGGAAGGG 59.239 47.826 0.34 0.00 0.00 3.95
4993 9255 3.872511 TGCAGCATTATCCAAAAGGTG 57.127 42.857 0.00 0.00 0.00 4.00
4994 9256 4.284234 AGTTTGCAGCATTATCCAAAAGGT 59.716 37.500 0.00 0.00 0.00 3.50
4995 9257 4.824289 AGTTTGCAGCATTATCCAAAAGG 58.176 39.130 0.00 0.00 0.00 3.11
4996 9258 7.887996 TTAAGTTTGCAGCATTATCCAAAAG 57.112 32.000 0.00 0.00 0.00 2.27
4997 9259 7.095271 GCTTTAAGTTTGCAGCATTATCCAAAA 60.095 33.333 0.00 0.00 32.17 2.44
4998 9260 6.368516 GCTTTAAGTTTGCAGCATTATCCAAA 59.631 34.615 0.00 0.00 32.17 3.28
4999 9261 5.868801 GCTTTAAGTTTGCAGCATTATCCAA 59.131 36.000 0.00 0.00 32.17 3.53
5000 9262 5.410067 GCTTTAAGTTTGCAGCATTATCCA 58.590 37.500 0.00 0.00 32.17 3.41
5001 9263 4.805719 GGCTTTAAGTTTGCAGCATTATCC 59.194 41.667 0.00 0.00 33.64 2.59
5002 9264 4.805719 GGGCTTTAAGTTTGCAGCATTATC 59.194 41.667 0.00 0.00 33.64 1.75
5003 9265 4.467438 AGGGCTTTAAGTTTGCAGCATTAT 59.533 37.500 0.00 0.00 33.64 1.28
5004 9266 3.831911 AGGGCTTTAAGTTTGCAGCATTA 59.168 39.130 0.00 0.00 33.64 1.90
5005 9267 2.634453 AGGGCTTTAAGTTTGCAGCATT 59.366 40.909 0.00 0.00 33.64 3.56
5006 9268 2.250924 AGGGCTTTAAGTTTGCAGCAT 58.749 42.857 0.00 0.00 33.64 3.79
5007 9269 1.703411 AGGGCTTTAAGTTTGCAGCA 58.297 45.000 0.00 0.00 33.64 4.41
5008 9270 2.820059 AAGGGCTTTAAGTTTGCAGC 57.180 45.000 0.00 0.00 0.00 5.25
5009 9271 4.051237 GTGAAAGGGCTTTAAGTTTGCAG 58.949 43.478 0.00 0.00 32.11 4.41
5010 9272 3.704061 AGTGAAAGGGCTTTAAGTTTGCA 59.296 39.130 0.00 0.00 32.11 4.08
5011 9273 4.051237 CAGTGAAAGGGCTTTAAGTTTGC 58.949 43.478 0.00 0.00 32.11 3.68
5012 9274 5.514274 TCAGTGAAAGGGCTTTAAGTTTG 57.486 39.130 0.00 0.00 32.11 2.93
5013 9275 6.731292 AATCAGTGAAAGGGCTTTAAGTTT 57.269 33.333 0.00 0.00 32.11 2.66
5014 9276 6.515832 CAAATCAGTGAAAGGGCTTTAAGTT 58.484 36.000 0.00 0.00 32.11 2.66
5015 9277 5.509670 GCAAATCAGTGAAAGGGCTTTAAGT 60.510 40.000 0.00 0.00 32.11 2.24
5016 9278 4.925646 GCAAATCAGTGAAAGGGCTTTAAG 59.074 41.667 0.00 0.00 32.11 1.85
5017 9279 4.343526 TGCAAATCAGTGAAAGGGCTTTAA 59.656 37.500 0.00 0.00 32.11 1.52
5018 9280 3.894427 TGCAAATCAGTGAAAGGGCTTTA 59.106 39.130 0.00 0.00 32.11 1.85
5019 9281 2.699846 TGCAAATCAGTGAAAGGGCTTT 59.300 40.909 0.00 0.00 35.14 3.51
5020 9282 2.318908 TGCAAATCAGTGAAAGGGCTT 58.681 42.857 0.00 0.00 0.00 4.35
5021 9283 1.999648 TGCAAATCAGTGAAAGGGCT 58.000 45.000 0.00 0.00 0.00 5.19
5022 9284 2.818130 TTGCAAATCAGTGAAAGGGC 57.182 45.000 0.00 0.00 0.00 5.19
5023 9285 2.997986 GCATTGCAAATCAGTGAAAGGG 59.002 45.455 1.71 0.00 34.68 3.95
5024 9286 3.921677 AGCATTGCAAATCAGTGAAAGG 58.078 40.909 11.91 0.00 34.68 3.11
5025 9287 4.552355 TGAGCATTGCAAATCAGTGAAAG 58.448 39.130 11.91 0.00 34.68 2.62
5026 9288 4.552355 CTGAGCATTGCAAATCAGTGAAA 58.448 39.130 22.20 0.00 34.68 2.69
5027 9289 4.168922 CTGAGCATTGCAAATCAGTGAA 57.831 40.909 22.20 1.39 34.68 3.18
5028 9290 3.842732 CTGAGCATTGCAAATCAGTGA 57.157 42.857 22.20 0.00 34.68 3.41
5031 9293 3.909430 ACAACTGAGCATTGCAAATCAG 58.091 40.909 25.93 25.93 43.81 2.90
5032 9294 3.318557 TGACAACTGAGCATTGCAAATCA 59.681 39.130 11.91 7.69 0.00 2.57
5033 9295 3.904571 TGACAACTGAGCATTGCAAATC 58.095 40.909 11.91 2.81 0.00 2.17
5034 9296 4.325028 TTGACAACTGAGCATTGCAAAT 57.675 36.364 11.91 0.00 0.00 2.32
5035 9297 3.797451 TTGACAACTGAGCATTGCAAA 57.203 38.095 11.91 0.00 0.00 3.68
5036 9298 3.797451 TTTGACAACTGAGCATTGCAA 57.203 38.095 11.91 0.00 0.00 4.08
5037 9299 3.570975 AGATTTGACAACTGAGCATTGCA 59.429 39.130 11.91 0.00 0.00 4.08
5038 9300 4.164294 GAGATTTGACAACTGAGCATTGC 58.836 43.478 0.00 0.00 0.00 3.56
5039 9301 5.366829 TGAGATTTGACAACTGAGCATTG 57.633 39.130 0.00 0.00 0.00 2.82
5040 9302 5.125097 GGATGAGATTTGACAACTGAGCATT 59.875 40.000 0.00 0.00 0.00 3.56
5041 9303 4.639310 GGATGAGATTTGACAACTGAGCAT 59.361 41.667 0.00 0.00 0.00 3.79
5042 9304 4.005650 GGATGAGATTTGACAACTGAGCA 58.994 43.478 0.00 0.00 0.00 4.26
5043 9305 4.260170 AGGATGAGATTTGACAACTGAGC 58.740 43.478 0.00 0.00 0.00 4.26
5044 9306 7.551974 ACAATAGGATGAGATTTGACAACTGAG 59.448 37.037 0.00 0.00 0.00 3.35
5045 9307 7.397221 ACAATAGGATGAGATTTGACAACTGA 58.603 34.615 0.00 0.00 0.00 3.41
5046 9308 7.551974 AGACAATAGGATGAGATTTGACAACTG 59.448 37.037 0.00 0.00 0.00 3.16
5047 9309 7.551974 CAGACAATAGGATGAGATTTGACAACT 59.448 37.037 0.00 0.00 0.00 3.16
5048 9310 7.201679 CCAGACAATAGGATGAGATTTGACAAC 60.202 40.741 0.00 0.00 0.00 3.32
5049 9311 6.825213 CCAGACAATAGGATGAGATTTGACAA 59.175 38.462 0.00 0.00 0.00 3.18
5050 9312 6.351711 CCAGACAATAGGATGAGATTTGACA 58.648 40.000 0.00 0.00 0.00 3.58
5051 9313 5.238214 GCCAGACAATAGGATGAGATTTGAC 59.762 44.000 0.00 0.00 0.00 3.18
5052 9314 5.104402 TGCCAGACAATAGGATGAGATTTGA 60.104 40.000 0.00 0.00 0.00 2.69
5053 9315 5.008415 GTGCCAGACAATAGGATGAGATTTG 59.992 44.000 0.00 0.00 0.00 2.32
5054 9316 5.104193 AGTGCCAGACAATAGGATGAGATTT 60.104 40.000 0.00 0.00 0.00 2.17
5055 9317 4.411540 AGTGCCAGACAATAGGATGAGATT 59.588 41.667 0.00 0.00 0.00 2.40
5056 9318 3.972638 AGTGCCAGACAATAGGATGAGAT 59.027 43.478 0.00 0.00 0.00 2.75
5057 9319 3.378512 AGTGCCAGACAATAGGATGAGA 58.621 45.455 0.00 0.00 0.00 3.27
5058 9320 3.834489 AGTGCCAGACAATAGGATGAG 57.166 47.619 0.00 0.00 0.00 2.90
5059 9321 6.994421 TTATAGTGCCAGACAATAGGATGA 57.006 37.500 0.00 0.00 31.29 2.92
5060 9322 7.879677 TGATTTATAGTGCCAGACAATAGGATG 59.120 37.037 0.00 0.00 31.29 3.51
5061 9323 7.977818 TGATTTATAGTGCCAGACAATAGGAT 58.022 34.615 0.00 0.00 31.29 3.24
5062 9324 7.373617 TGATTTATAGTGCCAGACAATAGGA 57.626 36.000 0.00 0.00 31.29 2.94
5063 9325 7.879677 TCATGATTTATAGTGCCAGACAATAGG 59.120 37.037 0.00 0.00 31.29 2.57
5064 9326 8.837788 TCATGATTTATAGTGCCAGACAATAG 57.162 34.615 0.00 0.00 31.29 1.73
5065 9327 9.223099 CATCATGATTTATAGTGCCAGACAATA 57.777 33.333 5.16 0.00 32.53 1.90
5066 9328 7.309012 GCATCATGATTTATAGTGCCAGACAAT 60.309 37.037 5.16 0.00 0.00 2.71
5067 9329 6.016860 GCATCATGATTTATAGTGCCAGACAA 60.017 38.462 5.16 0.00 0.00 3.18
5068 9330 5.471116 GCATCATGATTTATAGTGCCAGACA 59.529 40.000 5.16 0.00 0.00 3.41
5069 9331 5.106396 GGCATCATGATTTATAGTGCCAGAC 60.106 44.000 23.19 1.08 43.08 3.51
5070 9332 5.005740 GGCATCATGATTTATAGTGCCAGA 58.994 41.667 23.19 0.00 43.08 3.86
5071 9333 5.008331 AGGCATCATGATTTATAGTGCCAG 58.992 41.667 27.47 6.88 44.64 4.85
5072 9334 4.989277 AGGCATCATGATTTATAGTGCCA 58.011 39.130 27.47 0.00 44.64 4.92
5073 9335 5.709164 AGAAGGCATCATGATTTATAGTGCC 59.291 40.000 21.43 21.43 43.52 5.01
5074 9336 6.814506 AGAAGGCATCATGATTTATAGTGC 57.185 37.500 5.16 6.04 0.00 4.40
5084 9346 8.799367 CCATAATGAAATTAGAAGGCATCATGA 58.201 33.333 0.00 0.00 42.97 3.07
5085 9347 7.544566 GCCATAATGAAATTAGAAGGCATCATG 59.455 37.037 12.37 0.00 46.07 3.07
5086 9348 7.609056 GCCATAATGAAATTAGAAGGCATCAT 58.391 34.615 12.37 0.00 46.07 2.45
5087 9349 6.985117 GCCATAATGAAATTAGAAGGCATCA 58.015 36.000 12.37 0.00 46.07 3.07
5091 9353 7.394359 TGGATAGCCATAATGAAATTAGAAGGC 59.606 37.037 0.00 0.00 46.63 4.35
5092 9354 8.868522 TGGATAGCCATAATGAAATTAGAAGG 57.131 34.615 0.00 0.00 42.97 3.46
5093 9355 8.457261 GCTGGATAGCCATAATGAAATTAGAAG 58.543 37.037 0.00 0.00 44.91 2.85
5094 9356 8.340618 GCTGGATAGCCATAATGAAATTAGAA 57.659 34.615 0.00 0.00 44.91 2.10
5641 9916 7.058525 TCTATCATTGCATGGAAGTTCTTCAT 58.941 34.615 5.69 0.00 0.00 2.57
6075 10365 7.451501 TCTGTTATCAACTGCAAAATCATGA 57.548 32.000 0.00 0.00 0.00 3.07
7525 12468 1.614241 GGTGTCTGGTGCCGTATCCT 61.614 60.000 0.00 0.00 0.00 3.24
7622 12565 1.627297 ATCCACCGGGCCTTCTTCTC 61.627 60.000 6.32 0.00 0.00 2.87
7641 12584 7.592885 AAGTTACTTACAGTTACAGGTCAGA 57.407 36.000 0.00 0.00 30.75 3.27
7680 12627 1.538047 TCTTTGAGGCAGCCAATCAC 58.462 50.000 15.80 0.00 0.00 3.06
7730 12680 8.267894 ACAGATATACATAAAGAAGCCAACAGT 58.732 33.333 0.00 0.00 0.00 3.55
7733 12683 8.662781 TCACAGATATACATAAAGAAGCCAAC 57.337 34.615 0.00 0.00 0.00 3.77
7743 12693 6.764379 TCGGCCATTTCACAGATATACATAA 58.236 36.000 2.24 0.00 0.00 1.90
7766 12716 4.202441 CATGCTTATGGGTGCCCTATATC 58.798 47.826 8.91 0.00 36.94 1.63
7779 12729 7.118245 TGAGAAACAGTAACTGACATGCTTATG 59.882 37.037 0.00 0.00 35.18 1.90
7811 12761 2.366590 CCCTCTATGCTGACATGCTGTA 59.633 50.000 0.00 0.00 37.04 2.74
7842 12794 5.441709 TCCCATAAAACGGAACTGAAAAC 57.558 39.130 0.00 0.00 0.00 2.43
7873 12825 6.930667 ACAAGAACACGTTTAGGTTGTATT 57.069 33.333 0.00 0.00 0.00 1.89
7883 12839 4.933400 AGACTGTTGTACAAGAACACGTTT 59.067 37.500 8.98 0.00 0.00 3.60
7989 12977 6.089417 CCGTGGAAATGTTATTTTCTTTCTGC 59.911 38.462 0.00 0.00 36.17 4.26
8031 13019 0.973632 TGCGTGGAGTGGATTAGTGT 59.026 50.000 0.00 0.00 0.00 3.55
8115 13104 3.898509 GCCCGCTTGTGTGTGCAA 61.899 61.111 0.00 0.00 0.00 4.08
8153 13142 9.656323 TGTAGATGGTTTCCATAAGTCTAGTAT 57.344 33.333 0.99 0.00 45.26 2.12
8154 13143 9.132923 CTGTAGATGGTTTCCATAAGTCTAGTA 57.867 37.037 0.99 0.00 45.26 1.82
8155 13144 7.839705 TCTGTAGATGGTTTCCATAAGTCTAGT 59.160 37.037 0.99 0.00 45.26 2.57
8156 13145 8.239038 TCTGTAGATGGTTTCCATAAGTCTAG 57.761 38.462 0.99 0.00 45.26 2.43
8157 13146 8.603898 TTCTGTAGATGGTTTCCATAAGTCTA 57.396 34.615 0.99 0.00 45.26 2.59
8158 13147 7.496346 TTCTGTAGATGGTTTCCATAAGTCT 57.504 36.000 0.99 0.00 45.26 3.24
8159 13148 7.442666 GGATTCTGTAGATGGTTTCCATAAGTC 59.557 40.741 0.99 0.00 45.26 3.01
8160 13149 7.092444 TGGATTCTGTAGATGGTTTCCATAAGT 60.092 37.037 0.99 0.00 45.26 2.24
8161 13150 7.227512 GTGGATTCTGTAGATGGTTTCCATAAG 59.772 40.741 0.99 0.00 45.26 1.73
8162 13151 7.054124 GTGGATTCTGTAGATGGTTTCCATAA 58.946 38.462 0.99 0.00 45.26 1.90
8163 13152 6.409234 GGTGGATTCTGTAGATGGTTTCCATA 60.409 42.308 0.99 0.00 45.26 2.74
8165 13154 4.324254 GGTGGATTCTGTAGATGGTTTCCA 60.324 45.833 0.00 0.00 38.19 3.53
8166 13155 4.080299 AGGTGGATTCTGTAGATGGTTTCC 60.080 45.833 0.00 0.00 0.00 3.13
8167 13156 5.104259 AGGTGGATTCTGTAGATGGTTTC 57.896 43.478 0.00 0.00 0.00 2.78
8168 13157 5.395324 CGTAGGTGGATTCTGTAGATGGTTT 60.395 44.000 0.00 0.00 0.00 3.27
8169 13158 4.099573 CGTAGGTGGATTCTGTAGATGGTT 59.900 45.833 0.00 0.00 0.00 3.67
8170 13159 3.637229 CGTAGGTGGATTCTGTAGATGGT 59.363 47.826 0.00 0.00 0.00 3.55
8171 13160 4.244425 CGTAGGTGGATTCTGTAGATGG 57.756 50.000 0.00 0.00 0.00 3.51
8188 13177 0.531200 GTGGGGAGACAAGTCCGTAG 59.469 60.000 0.00 0.00 37.50 3.51
8189 13178 0.113776 AGTGGGGAGACAAGTCCGTA 59.886 55.000 0.00 0.00 37.50 4.02
8190 13179 0.113776 TAGTGGGGAGACAAGTCCGT 59.886 55.000 0.00 0.00 37.50 4.69
8191 13180 1.486211 ATAGTGGGGAGACAAGTCCG 58.514 55.000 0.00 0.00 37.50 4.79
8192 13181 2.699321 GGTATAGTGGGGAGACAAGTCC 59.301 54.545 0.00 0.00 35.64 3.85
8193 13182 3.385111 CAGGTATAGTGGGGAGACAAGTC 59.615 52.174 0.00 0.00 0.00 3.01
8194 13183 3.375699 CAGGTATAGTGGGGAGACAAGT 58.624 50.000 0.00 0.00 0.00 3.16
8195 13184 2.700897 CCAGGTATAGTGGGGAGACAAG 59.299 54.545 0.00 0.00 0.00 3.16
8196 13185 2.759355 CCAGGTATAGTGGGGAGACAA 58.241 52.381 0.00 0.00 0.00 3.18
8197 13186 1.691482 GCCAGGTATAGTGGGGAGACA 60.691 57.143 3.70 0.00 35.39 3.41
8198 13187 1.049402 GCCAGGTATAGTGGGGAGAC 58.951 60.000 3.70 0.00 35.39 3.36
8199 13188 0.105142 GGCCAGGTATAGTGGGGAGA 60.105 60.000 0.00 0.00 35.39 3.71
8200 13189 0.399949 TGGCCAGGTATAGTGGGGAG 60.400 60.000 0.00 0.00 35.39 4.30
8201 13190 0.270699 ATGGCCAGGTATAGTGGGGA 59.729 55.000 13.05 0.00 35.39 4.81
8202 13191 0.693049 GATGGCCAGGTATAGTGGGG 59.307 60.000 13.05 0.00 35.39 4.96
8203 13192 0.693049 GGATGGCCAGGTATAGTGGG 59.307 60.000 13.05 0.00 35.39 4.61
8204 13193 0.693049 GGGATGGCCAGGTATAGTGG 59.307 60.000 13.05 0.00 38.21 4.00
8205 13194 1.734655 AGGGATGGCCAGGTATAGTG 58.265 55.000 13.05 0.00 35.15 2.74
8206 13195 2.057922 CAAGGGATGGCCAGGTATAGT 58.942 52.381 13.05 0.00 35.15 2.12
8207 13196 1.352352 CCAAGGGATGGCCAGGTATAG 59.648 57.143 13.05 0.00 43.80 1.31
8208 13197 1.444933 CCAAGGGATGGCCAGGTATA 58.555 55.000 13.05 0.00 43.80 1.47
8209 13198 2.244487 CCAAGGGATGGCCAGGTAT 58.756 57.895 13.05 0.00 43.80 2.73
8210 13199 3.754043 CCAAGGGATGGCCAGGTA 58.246 61.111 13.05 0.00 43.80 3.08
8235 13224 4.680237 TGCGTCGGGCTTGGTCAG 62.680 66.667 0.00 0.00 44.05 3.51
8236 13225 4.680237 CTGCGTCGGGCTTGGTCA 62.680 66.667 0.00 0.00 44.05 4.02
8237 13226 3.876589 TTCTGCGTCGGGCTTGGTC 62.877 63.158 0.00 0.00 44.05 4.02
8238 13227 2.748058 ATTTCTGCGTCGGGCTTGGT 62.748 55.000 0.00 0.00 44.05 3.67
8239 13228 1.982073 GATTTCTGCGTCGGGCTTGG 61.982 60.000 0.00 0.00 44.05 3.61
8240 13229 1.425428 GATTTCTGCGTCGGGCTTG 59.575 57.895 0.00 0.00 44.05 4.01
8241 13230 1.745489 GGATTTCTGCGTCGGGCTT 60.745 57.895 0.00 0.00 44.05 4.35
8242 13231 2.125106 GGATTTCTGCGTCGGGCT 60.125 61.111 0.00 0.00 44.05 5.19
8243 13232 3.202706 GGGATTTCTGCGTCGGGC 61.203 66.667 0.00 0.00 43.96 6.13
8244 13233 1.815421 CTGGGATTTCTGCGTCGGG 60.815 63.158 0.00 0.00 0.00 5.14
8245 13234 1.815421 CCTGGGATTTCTGCGTCGG 60.815 63.158 0.00 0.00 0.00 4.79
8246 13235 2.464459 GCCTGGGATTTCTGCGTCG 61.464 63.158 0.00 0.00 0.00 5.12
8247 13236 1.078143 AGCCTGGGATTTCTGCGTC 60.078 57.895 0.00 0.00 0.00 5.19
8248 13237 1.078143 GAGCCTGGGATTTCTGCGT 60.078 57.895 0.00 0.00 0.00 5.24
8249 13238 2.176273 CGAGCCTGGGATTTCTGCG 61.176 63.158 0.00 0.00 0.00 5.18
8250 13239 1.821332 CCGAGCCTGGGATTTCTGC 60.821 63.158 0.00 0.00 0.00 4.26
8251 13240 1.821332 GCCGAGCCTGGGATTTCTG 60.821 63.158 0.00 0.00 0.00 3.02
8252 13241 2.592308 GCCGAGCCTGGGATTTCT 59.408 61.111 0.00 0.00 0.00 2.52
8253 13242 2.517166 GGCCGAGCCTGGGATTTC 60.517 66.667 0.00 0.00 46.69 2.17
8276 13265 1.400530 ATTTCTAGGCCCGACTCCCG 61.401 60.000 0.00 0.00 38.18 5.14
8277 13266 0.393448 GATTTCTAGGCCCGACTCCC 59.607 60.000 0.00 0.00 0.00 4.30
8278 13267 1.069358 CTGATTTCTAGGCCCGACTCC 59.931 57.143 0.00 0.00 0.00 3.85
8279 13268 1.069358 CCTGATTTCTAGGCCCGACTC 59.931 57.143 0.00 0.00 0.00 3.36
8280 13269 1.123928 CCTGATTTCTAGGCCCGACT 58.876 55.000 0.00 0.00 0.00 4.18
8281 13270 3.688553 CCTGATTTCTAGGCCCGAC 57.311 57.895 0.00 0.00 0.00 4.79
8287 13276 1.685148 GCTTGGGCCTGATTTCTAGG 58.315 55.000 4.53 0.00 38.39 3.02
8302 13291 3.365265 GTTGACGGGCCAGGCTTG 61.365 66.667 11.07 6.66 0.00 4.01
8305 13294 3.887335 TTACGTTGACGGGCCAGGC 62.887 63.158 8.08 4.27 44.95 4.85
8306 13295 0.885596 TTTTACGTTGACGGGCCAGG 60.886 55.000 8.08 0.00 44.95 4.45
8307 13296 0.515564 CTTTTACGTTGACGGGCCAG 59.484 55.000 4.39 1.85 44.95 4.85
8308 13297 1.508808 GCTTTTACGTTGACGGGCCA 61.509 55.000 4.39 0.00 44.95 5.36
8309 13298 1.208358 GCTTTTACGTTGACGGGCC 59.792 57.895 8.52 0.00 44.95 5.80
8310 13299 1.208358 GGCTTTTACGTTGACGGGC 59.792 57.895 8.52 4.33 44.95 6.13
8311 13300 0.885596 TGGGCTTTTACGTTGACGGG 60.886 55.000 8.52 0.00 44.95 5.28
8312 13301 1.161843 ATGGGCTTTTACGTTGACGG 58.838 50.000 8.52 0.00 44.95 4.79
8313 13302 2.981400 AATGGGCTTTTACGTTGACG 57.019 45.000 0.00 1.41 46.33 4.35
8314 13303 4.351131 CCTAATGGGCTTTTACGTTGAC 57.649 45.455 0.00 0.00 0.00 3.18
8337 13326 3.839432 GAAGAGACCCGGCCCGAG 61.839 72.222 3.71 0.00 0.00 4.63
8340 13329 1.891722 TTAACGAAGAGACCCGGCCC 61.892 60.000 0.00 0.00 0.00 5.80
8341 13330 0.738762 GTTAACGAAGAGACCCGGCC 60.739 60.000 0.00 0.00 0.00 6.13
8342 13331 0.245813 AGTTAACGAAGAGACCCGGC 59.754 55.000 0.00 0.00 0.00 6.13
8343 13332 1.542915 TGAGTTAACGAAGAGACCCGG 59.457 52.381 0.00 0.00 0.00 5.73
8344 13333 2.030540 TGTGAGTTAACGAAGAGACCCG 60.031 50.000 0.00 0.00 0.00 5.28
8345 13334 3.655276 TGTGAGTTAACGAAGAGACCC 57.345 47.619 0.00 0.00 0.00 4.46
8346 13335 7.544566 TCATATTTGTGAGTTAACGAAGAGACC 59.455 37.037 0.00 0.00 0.00 3.85
8347 13336 8.373992 GTCATATTTGTGAGTTAACGAAGAGAC 58.626 37.037 0.00 0.00 0.00 3.36
8348 13337 7.272731 CGTCATATTTGTGAGTTAACGAAGAGA 59.727 37.037 0.00 0.00 0.00 3.10
8349 13338 7.384124 CGTCATATTTGTGAGTTAACGAAGAG 58.616 38.462 0.00 0.00 0.00 2.85
8350 13339 6.309494 CCGTCATATTTGTGAGTTAACGAAGA 59.691 38.462 0.00 0.00 0.00 2.87
8351 13340 6.455113 CCCGTCATATTTGTGAGTTAACGAAG 60.455 42.308 0.00 0.00 0.00 3.79
8352 13341 5.349270 CCCGTCATATTTGTGAGTTAACGAA 59.651 40.000 0.00 0.00 0.00 3.85
8353 13342 4.865925 CCCGTCATATTTGTGAGTTAACGA 59.134 41.667 0.00 0.00 0.00 3.85
8354 13343 4.493545 GCCCGTCATATTTGTGAGTTAACG 60.494 45.833 0.00 0.00 0.00 3.18
8355 13344 4.201881 GGCCCGTCATATTTGTGAGTTAAC 60.202 45.833 0.00 0.00 0.00 2.01
8356 13345 3.942748 GGCCCGTCATATTTGTGAGTTAA 59.057 43.478 0.00 0.00 0.00 2.01
8357 13346 3.537580 GGCCCGTCATATTTGTGAGTTA 58.462 45.455 0.00 0.00 0.00 2.24
8358 13347 2.365582 GGCCCGTCATATTTGTGAGTT 58.634 47.619 0.00 0.00 0.00 3.01
8359 13348 1.408266 GGGCCCGTCATATTTGTGAGT 60.408 52.381 5.69 0.00 0.00 3.41
8360 13349 1.308998 GGGCCCGTCATATTTGTGAG 58.691 55.000 5.69 0.00 0.00 3.51
8361 13350 0.462937 CGGGCCCGTCATATTTGTGA 60.463 55.000 36.64 0.00 34.35 3.58
8362 13351 1.444119 CCGGGCCCGTCATATTTGTG 61.444 60.000 40.52 18.92 37.81 3.33
8363 13352 1.153046 CCGGGCCCGTCATATTTGT 60.153 57.895 40.52 0.00 37.81 2.83
8364 13353 1.896660 CCCGGGCCCGTCATATTTG 60.897 63.158 40.52 23.20 37.81 2.32
8365 13354 2.513895 CCCGGGCCCGTCATATTT 59.486 61.111 40.52 0.00 37.81 1.40
8366 13355 4.265056 GCCCGGGCCCGTCATATT 62.265 66.667 40.52 0.00 37.81 1.28
8398 13387 3.307339 GGCCTAGATATTGAGCCTGAAGG 60.307 52.174 0.00 0.00 40.57 3.46
8399 13388 3.307339 GGGCCTAGATATTGAGCCTGAAG 60.307 52.174 0.84 0.00 43.36 3.02
8400 13389 2.639839 GGGCCTAGATATTGAGCCTGAA 59.360 50.000 0.84 0.00 43.36 3.02
8401 13390 2.260822 GGGCCTAGATATTGAGCCTGA 58.739 52.381 0.84 0.00 43.36 3.86
8402 13391 1.980765 TGGGCCTAGATATTGAGCCTG 59.019 52.381 4.53 0.00 43.36 4.85
8403 13392 2.264455 CTGGGCCTAGATATTGAGCCT 58.736 52.381 11.42 0.00 43.36 4.58
8404 13393 1.280421 CCTGGGCCTAGATATTGAGCC 59.720 57.143 19.36 0.00 43.09 4.70
8405 13394 1.339535 GCCTGGGCCTAGATATTGAGC 60.340 57.143 19.36 6.60 34.56 4.26
8406 13395 2.777832 GCCTGGGCCTAGATATTGAG 57.222 55.000 19.36 0.00 34.56 3.02
8419 13408 3.933048 CTCACAAGCTGGGCCTGGG 62.933 68.421 12.70 0.00 0.00 4.45
8420 13409 2.360852 CTCACAAGCTGGGCCTGG 60.361 66.667 12.70 2.60 0.00 4.45
8421 13410 3.060615 GCTCACAAGCTGGGCCTG 61.061 66.667 4.53 5.32 41.09 4.85
8430 13419 2.954753 GCCCGACGTTGCTCACAAG 61.955 63.158 0.00 0.00 36.16 3.16
8431 13420 2.970324 GCCCGACGTTGCTCACAA 60.970 61.111 0.00 0.00 0.00 3.33
8432 13421 4.980805 GGCCCGACGTTGCTCACA 62.981 66.667 0.00 0.00 0.00 3.58
8449 13438 0.958876 AAAAAGCTTAGCCCGACCCG 60.959 55.000 0.00 0.00 0.00 5.28
8450 13439 2.957060 AAAAAGCTTAGCCCGACCC 58.043 52.632 0.00 0.00 0.00 4.46
8465 13454 0.179012 GACCTGACCCGACCCAAAAA 60.179 55.000 0.00 0.00 0.00 1.94
8466 13455 1.452801 GACCTGACCCGACCCAAAA 59.547 57.895 0.00 0.00 0.00 2.44
8467 13456 2.874664 CGACCTGACCCGACCCAAA 61.875 63.158 0.00 0.00 0.00 3.28
8468 13457 3.307906 CGACCTGACCCGACCCAA 61.308 66.667 0.00 0.00 0.00 4.12
8492 13481 1.746517 GGAGTATACCTGGCCACGG 59.253 63.158 16.92 16.92 0.00 4.94
8493 13482 1.746517 GGGAGTATACCTGGCCACG 59.253 63.158 0.00 0.00 0.00 4.94
8494 13483 0.693092 TGGGGAGTATACCTGGCCAC 60.693 60.000 0.00 0.00 0.00 5.01
8495 13484 0.693092 GTGGGGAGTATACCTGGCCA 60.693 60.000 4.71 4.71 0.00 5.36
8496 13485 0.693092 TGTGGGGAGTATACCTGGCC 60.693 60.000 0.00 0.00 0.00 5.36
8497 13486 1.209621 TTGTGGGGAGTATACCTGGC 58.790 55.000 0.00 0.00 0.00 4.85
8498 13487 4.207165 CAATTTGTGGGGAGTATACCTGG 58.793 47.826 0.00 0.00 0.00 4.45
8499 13488 4.207165 CCAATTTGTGGGGAGTATACCTG 58.793 47.826 0.00 0.00 44.64 4.00
8500 13489 4.519906 CCAATTTGTGGGGAGTATACCT 57.480 45.455 0.00 0.00 44.64 3.08
8512 13501 4.935352 TCAGGAGGAAAACCAATTTGTG 57.065 40.909 0.00 0.00 0.00 3.33
8513 13502 6.464322 GGAAATCAGGAGGAAAACCAATTTGT 60.464 38.462 0.00 0.00 30.75 2.83
8514 13503 5.934043 GGAAATCAGGAGGAAAACCAATTTG 59.066 40.000 0.00 0.00 30.75 2.32
8515 13504 5.606329 TGGAAATCAGGAGGAAAACCAATTT 59.394 36.000 0.00 0.00 32.13 1.82
8516 13505 5.154418 TGGAAATCAGGAGGAAAACCAATT 58.846 37.500 0.00 0.00 0.00 2.32
8517 13506 4.750941 TGGAAATCAGGAGGAAAACCAAT 58.249 39.130 0.00 0.00 0.00 3.16
8518 13507 4.151883 CTGGAAATCAGGAGGAAAACCAA 58.848 43.478 0.00 0.00 39.76 3.67
8519 13508 3.766545 CTGGAAATCAGGAGGAAAACCA 58.233 45.455 0.00 0.00 39.76 3.67
8531 13520 1.076549 GGGCCACCACTGGAAATCA 59.923 57.895 4.39 0.00 40.55 2.57
8532 13521 1.682344 GGGGCCACCACTGGAAATC 60.682 63.158 4.39 0.00 40.55 2.17
8533 13522 2.445155 GGGGCCACCACTGGAAAT 59.555 61.111 4.39 0.00 40.55 2.17
8534 13523 3.909651 GGGGGCCACCACTGGAAA 61.910 66.667 22.91 0.00 40.55 3.13
8543 13532 2.941583 AAAGGGAGAGGGGGCCAC 60.942 66.667 4.39 0.00 0.00 5.01
8544 13533 2.614013 GAAAGGGAGAGGGGGCCA 60.614 66.667 4.39 0.00 0.00 5.36
8545 13534 1.584717 AATGAAAGGGAGAGGGGGCC 61.585 60.000 0.00 0.00 0.00 5.80
8546 13535 0.336392 AAATGAAAGGGAGAGGGGGC 59.664 55.000 0.00 0.00 0.00 5.80
8547 13536 2.042979 TGAAAATGAAAGGGAGAGGGGG 59.957 50.000 0.00 0.00 0.00 5.40
8548 13537 3.456380 TGAAAATGAAAGGGAGAGGGG 57.544 47.619 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.