Multiple sequence alignment - TraesCS5D01G309600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G309600 chr5D 100.000 5762 0 0 889 6650 406591219 406585458 0.000000e+00 10641.0
1 TraesCS5D01G309600 chr5D 100.000 605 0 0 1 605 406592107 406591503 0.000000e+00 1118.0
2 TraesCS5D01G309600 chr5D 83.962 106 10 3 9 113 73393653 73393752 1.970000e-15 95.3
3 TraesCS5D01G309600 chr5B 93.908 2331 104 25 4343 6650 487599569 487597254 0.000000e+00 3483.0
4 TraesCS5D01G309600 chr5B 93.731 2010 85 14 898 2900 487603203 487601228 0.000000e+00 2976.0
5 TraesCS5D01G309600 chr5B 87.709 895 62 13 3501 4356 487600581 487599696 0.000000e+00 1000.0
6 TraesCS5D01G309600 chr5B 89.439 606 36 7 2901 3505 487601188 487600610 0.000000e+00 739.0
7 TraesCS5D01G309600 chr5B 88.064 377 24 8 234 599 487604003 487603637 1.710000e-115 427.0
8 TraesCS5D01G309600 chr5A 93.042 2012 112 21 900 2900 512229572 512227578 0.000000e+00 2915.0
9 TraesCS5D01G309600 chr5A 93.260 1647 92 15 4400 6035 512225702 512224064 0.000000e+00 2409.0
10 TraesCS5D01G309600 chr5A 90.883 702 42 11 3706 4394 512226674 512225982 0.000000e+00 922.0
11 TraesCS5D01G309600 chr5A 90.594 606 40 6 2901 3505 512227538 512226949 0.000000e+00 787.0
12 TraesCS5D01G309600 chr5A 91.842 380 15 8 231 605 512229962 512229594 3.560000e-142 516.0
13 TraesCS5D01G309600 chr5A 91.556 225 16 2 3501 3724 512226920 512226698 2.330000e-79 307.0
14 TraesCS5D01G309600 chr5A 83.092 207 18 9 6063 6254 512210630 512210426 8.870000e-39 172.0
15 TraesCS5D01G309600 chr2A 91.803 183 11 4 8 188 529799301 529799481 1.110000e-62 252.0
16 TraesCS5D01G309600 chr2A 78.218 202 28 14 50 245 750884550 750884741 1.520000e-21 115.0
17 TraesCS5D01G309600 chr7B 90.811 185 12 1 9 188 672835413 672835229 6.660000e-60 243.0
18 TraesCS5D01G309600 chr6A 90.055 181 17 1 8 188 610910833 610911012 4.010000e-57 233.0
19 TraesCS5D01G309600 chr6A 87.059 170 17 3 9 173 615545957 615546126 3.170000e-43 187.0
20 TraesCS5D01G309600 chr6B 89.560 182 16 2 9 188 65985568 65985388 1.870000e-55 228.0
21 TraesCS5D01G309600 chr7D 89.130 184 15 4 9 188 620123113 620123295 2.410000e-54 224.0
22 TraesCS5D01G309600 chr4A 89.634 164 14 3 9 171 691320512 691320351 8.740000e-49 206.0
23 TraesCS5D01G309600 chr3D 81.513 238 29 9 9 241 547449558 547449331 1.470000e-41 182.0
24 TraesCS5D01G309600 chr3B 83.516 182 25 5 9 188 477888803 477888625 1.480000e-36 165.0
25 TraesCS5D01G309600 chr3B 85.246 122 12 3 127 242 496693861 496693982 3.260000e-23 121.0
26 TraesCS5D01G309600 chr3B 98.148 54 1 0 187 240 584578056 584578109 1.970000e-15 95.3
27 TraesCS5D01G309600 chr3A 87.255 102 11 2 136 236 41977515 41977415 1.520000e-21 115.0
28 TraesCS5D01G309600 chr3A 90.909 66 4 2 176 240 610554998 610555062 3.300000e-13 87.9
29 TraesCS5D01G309600 chr2B 81.967 122 15 3 122 237 441866055 441866175 5.490000e-16 97.1
30 TraesCS5D01G309600 chr6D 82.203 118 13 3 127 237 263995006 263995122 1.970000e-15 95.3
31 TraesCS5D01G309600 chr1B 85.542 83 8 4 187 266 688760242 688760161 4.270000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G309600 chr5D 406585458 406592107 6649 True 5879.500000 10641 100.000000 1 6650 2 chr5D.!!$R1 6649
1 TraesCS5D01G309600 chr5B 487597254 487604003 6749 True 1725.000000 3483 90.570200 234 6650 5 chr5B.!!$R1 6416
2 TraesCS5D01G309600 chr5A 512224064 512229962 5898 True 1309.333333 2915 91.862833 231 6035 6 chr5A.!!$R2 5804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.104120 TTCCGGTGATGGCGTCTATG 59.896 55.000 8.40 0.00 0.00 2.23 F
139 140 0.249447 TGGCGTCTATGATGGCTTCG 60.249 55.000 13.13 0.00 43.27 3.79 F
140 141 0.249489 GGCGTCTATGATGGCTTCGT 60.249 55.000 6.16 0.49 40.34 3.85 F
178 179 0.601558 CCGGTTCAGTCTTTCGGAGA 59.398 55.000 0.00 0.00 42.94 3.71 F
223 224 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73 F
224 225 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74 F
225 226 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41 F
226 227 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90 F
227 228 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07 F
2344 2519 0.321122 GAGGGAATAGCATGAGCCCG 60.321 60.000 0.00 0.00 43.64 6.13 F
3498 3713 0.727398 GAACCTCCCAATTTCGAGCG 59.273 55.000 0.00 0.00 0.00 5.03 F
4553 5275 1.065401 TGTTTTCAAGTGGCTTGCTCG 59.935 47.619 4.16 0.00 40.84 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1091 1256 0.408309 TCGAAGGTTGAGGGGAGAGA 59.592 55.000 0.00 0.0 0.00 3.10 R
1460 1629 1.473258 AAAACAACACAGCCAGCAGA 58.527 45.000 0.00 0.0 0.00 4.26 R
1494 1663 1.876714 CGGTATCAACGACGGCTGG 60.877 63.158 0.00 0.0 0.00 4.85 R
1841 2013 1.909700 TGCCTCCTAAAGCAAACCAG 58.090 50.000 0.00 0.0 35.69 4.00 R
2067 2240 5.983540 AGGGTAGAGAGCAACAAGATAAAG 58.016 41.667 0.00 0.0 0.00 1.85 R
2069 2242 6.374417 AAAGGGTAGAGAGCAACAAGATAA 57.626 37.500 0.00 0.0 0.00 1.75 R
2294 2468 4.696479 AAGGCCTGTATGTATGAAGAGG 57.304 45.455 5.69 0.0 0.00 3.69 R
2310 2484 6.405953 GCTATTCCCTCTTAAAAGAAAAGGCC 60.406 42.308 0.00 0.0 34.03 5.19 R
2462 2637 2.224018 GGCAAGCAAGAAACATCCACAA 60.224 45.455 0.00 0.0 0.00 3.33 R
3820 4114 0.037232 GCGGCACTACTTCTGGACTT 60.037 55.000 0.00 0.0 0.00 3.01 R
5150 5874 0.108138 CCGAGAGCCCAACAGGTTAG 60.108 60.000 0.00 0.0 38.26 2.34 R
5708 6436 0.396811 CGGGGTTCTTTGTCCACTCT 59.603 55.000 0.00 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.792106 GTGCCCATGCGAATCAAC 57.208 55.556 0.00 0.00 41.78 3.18
18 19 1.139520 GTGCCCATGCGAATCAACC 59.860 57.895 0.00 0.00 41.78 3.77
19 20 1.001020 TGCCCATGCGAATCAACCT 60.001 52.632 0.00 0.00 41.78 3.50
20 21 1.314534 TGCCCATGCGAATCAACCTG 61.315 55.000 0.00 0.00 41.78 4.00
21 22 1.315257 GCCCATGCGAATCAACCTGT 61.315 55.000 0.00 0.00 0.00 4.00
22 23 0.452987 CCCATGCGAATCAACCTGTG 59.547 55.000 0.00 0.00 0.00 3.66
23 24 0.452987 CCATGCGAATCAACCTGTGG 59.547 55.000 0.00 0.00 0.00 4.17
24 25 1.167851 CATGCGAATCAACCTGTGGT 58.832 50.000 0.00 0.00 37.65 4.16
36 37 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
37 38 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
38 39 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
39 40 3.338249 CTGTGGTTGAGATGGTTAGGTG 58.662 50.000 0.00 0.00 0.00 4.00
40 41 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
41 42 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
42 43 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
43 44 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
44 45 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
45 46 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
46 47 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
47 48 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
48 49 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
49 50 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
50 51 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
51 52 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
52 53 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
53 54 3.105283 GTTAGGTGGACAGTGGTATCCT 58.895 50.000 0.00 0.00 35.86 3.24
54 55 1.867363 AGGTGGACAGTGGTATCCTC 58.133 55.000 0.00 0.00 35.86 3.71
55 56 1.078823 AGGTGGACAGTGGTATCCTCA 59.921 52.381 0.00 0.00 35.86 3.86
56 57 1.906574 GGTGGACAGTGGTATCCTCAA 59.093 52.381 0.00 0.00 35.86 3.02
57 58 2.354805 GGTGGACAGTGGTATCCTCAAC 60.355 54.545 0.00 0.00 35.86 3.18
58 59 1.906574 TGGACAGTGGTATCCTCAACC 59.093 52.381 0.00 0.00 35.86 3.77
59 60 1.209747 GGACAGTGGTATCCTCAACCC 59.790 57.143 0.00 0.00 36.06 4.11
60 61 1.906574 GACAGTGGTATCCTCAACCCA 59.093 52.381 0.00 0.00 36.06 4.51
61 62 2.505819 GACAGTGGTATCCTCAACCCAT 59.494 50.000 0.00 0.00 36.06 4.00
62 63 2.505819 ACAGTGGTATCCTCAACCCATC 59.494 50.000 0.00 0.00 36.06 3.51
63 64 2.505407 CAGTGGTATCCTCAACCCATCA 59.495 50.000 0.00 0.00 36.06 3.07
64 65 2.774234 AGTGGTATCCTCAACCCATCAG 59.226 50.000 0.00 0.00 36.06 2.90
65 66 2.126882 TGGTATCCTCAACCCATCAGG 58.873 52.381 0.00 0.00 43.78 3.86
81 82 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
82 83 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
83 84 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
84 85 1.547675 GGGTTCAAATCCTGGTGCTCA 60.548 52.381 0.00 0.00 0.00 4.26
85 86 1.541588 GGTTCAAATCCTGGTGCTCAC 59.458 52.381 0.00 0.00 0.00 3.51
86 87 2.229792 GTTCAAATCCTGGTGCTCACA 58.770 47.619 2.21 0.00 0.00 3.58
87 88 2.821969 GTTCAAATCCTGGTGCTCACAT 59.178 45.455 2.21 0.00 0.00 3.21
88 89 3.159213 TCAAATCCTGGTGCTCACATT 57.841 42.857 2.21 0.00 0.00 2.71
89 90 4.299586 TCAAATCCTGGTGCTCACATTA 57.700 40.909 2.21 0.00 0.00 1.90
90 91 4.858850 TCAAATCCTGGTGCTCACATTAT 58.141 39.130 2.21 0.00 0.00 1.28
91 92 5.263599 TCAAATCCTGGTGCTCACATTATT 58.736 37.500 2.21 0.00 0.00 1.40
92 93 5.716228 TCAAATCCTGGTGCTCACATTATTT 59.284 36.000 2.21 0.65 0.00 1.40
93 94 5.841957 AATCCTGGTGCTCACATTATTTC 57.158 39.130 2.21 0.00 0.00 2.17
94 95 4.574674 TCCTGGTGCTCACATTATTTCT 57.425 40.909 2.21 0.00 0.00 2.52
95 96 4.264253 TCCTGGTGCTCACATTATTTCTG 58.736 43.478 2.21 0.00 0.00 3.02
96 97 4.019411 TCCTGGTGCTCACATTATTTCTGA 60.019 41.667 2.21 0.00 0.00 3.27
97 98 4.701651 CCTGGTGCTCACATTATTTCTGAA 59.298 41.667 2.21 0.00 0.00 3.02
98 99 5.359009 CCTGGTGCTCACATTATTTCTGAAT 59.641 40.000 2.21 0.00 0.00 2.57
99 100 6.127535 CCTGGTGCTCACATTATTTCTGAATT 60.128 38.462 2.21 0.00 0.00 2.17
100 101 7.230849 TGGTGCTCACATTATTTCTGAATTT 57.769 32.000 2.21 0.00 0.00 1.82
101 102 8.347004 TGGTGCTCACATTATTTCTGAATTTA 57.653 30.769 2.21 0.00 0.00 1.40
102 103 8.970020 TGGTGCTCACATTATTTCTGAATTTAT 58.030 29.630 2.21 0.00 0.00 1.40
103 104 9.807649 GGTGCTCACATTATTTCTGAATTTATT 57.192 29.630 2.21 0.00 0.00 1.40
118 119 6.862209 TGAATTTATTTCAGGATTTCCGGTG 58.138 36.000 0.00 0.00 39.44 4.94
119 120 6.661377 TGAATTTATTTCAGGATTTCCGGTGA 59.339 34.615 0.00 0.00 39.44 4.02
120 121 7.341769 TGAATTTATTTCAGGATTTCCGGTGAT 59.658 33.333 0.00 0.00 39.44 3.06
121 122 6.449635 TTTATTTCAGGATTTCCGGTGATG 57.550 37.500 0.00 0.00 42.08 3.07
122 123 2.418368 TTCAGGATTTCCGGTGATGG 57.582 50.000 0.00 0.00 42.08 3.51
123 124 0.107214 TCAGGATTTCCGGTGATGGC 60.107 55.000 0.00 0.00 42.08 4.40
124 125 1.153168 AGGATTTCCGGTGATGGCG 60.153 57.895 0.00 0.00 42.08 5.69
125 126 1.451387 GGATTTCCGGTGATGGCGT 60.451 57.895 0.00 0.00 0.00 5.68
126 127 1.436983 GGATTTCCGGTGATGGCGTC 61.437 60.000 0.00 0.00 0.00 5.19
127 128 0.462047 GATTTCCGGTGATGGCGTCT 60.462 55.000 8.40 0.00 0.00 4.18
128 129 0.828022 ATTTCCGGTGATGGCGTCTA 59.172 50.000 8.40 0.00 0.00 2.59
129 130 0.828022 TTTCCGGTGATGGCGTCTAT 59.172 50.000 8.40 0.00 0.00 1.98
130 131 0.104120 TTCCGGTGATGGCGTCTATG 59.896 55.000 8.40 0.00 0.00 2.23
131 132 0.753848 TCCGGTGATGGCGTCTATGA 60.754 55.000 8.40 0.00 0.00 2.15
132 133 0.318441 CCGGTGATGGCGTCTATGAT 59.682 55.000 8.40 0.00 0.00 2.45
133 134 1.422388 CGGTGATGGCGTCTATGATG 58.578 55.000 8.40 0.00 0.00 3.07
134 135 1.800805 GGTGATGGCGTCTATGATGG 58.199 55.000 8.40 0.00 0.00 3.51
135 136 1.151668 GTGATGGCGTCTATGATGGC 58.848 55.000 8.40 6.42 43.18 4.40
136 137 1.051008 TGATGGCGTCTATGATGGCT 58.949 50.000 8.40 1.37 43.27 4.75
137 138 1.417517 TGATGGCGTCTATGATGGCTT 59.582 47.619 8.40 7.86 43.27 4.35
138 139 2.072298 GATGGCGTCTATGATGGCTTC 58.928 52.381 13.13 12.18 43.27 3.86
139 140 0.249447 TGGCGTCTATGATGGCTTCG 60.249 55.000 13.13 0.00 43.27 3.79
140 141 0.249489 GGCGTCTATGATGGCTTCGT 60.249 55.000 6.16 0.49 40.34 3.85
141 142 1.000607 GGCGTCTATGATGGCTTCGTA 60.001 52.381 6.16 2.73 40.34 3.43
142 143 2.545113 GGCGTCTATGATGGCTTCGTAA 60.545 50.000 6.16 0.00 40.34 3.18
143 144 3.120792 GCGTCTATGATGGCTTCGTAAA 58.879 45.455 4.17 0.00 0.00 2.01
144 145 3.741344 GCGTCTATGATGGCTTCGTAAAT 59.259 43.478 4.17 0.00 0.00 1.40
145 146 4.143305 GCGTCTATGATGGCTTCGTAAATC 60.143 45.833 4.17 0.00 0.00 2.17
146 147 5.223382 CGTCTATGATGGCTTCGTAAATCT 58.777 41.667 4.17 0.00 0.00 2.40
147 148 5.343593 CGTCTATGATGGCTTCGTAAATCTC 59.656 44.000 4.17 0.00 0.00 2.75
148 149 6.216569 GTCTATGATGGCTTCGTAAATCTCA 58.783 40.000 4.17 0.00 0.00 3.27
149 150 6.701841 GTCTATGATGGCTTCGTAAATCTCAA 59.298 38.462 4.17 0.00 0.00 3.02
150 151 5.998454 ATGATGGCTTCGTAAATCTCAAG 57.002 39.130 0.00 0.00 0.00 3.02
151 152 5.084818 TGATGGCTTCGTAAATCTCAAGA 57.915 39.130 0.00 0.00 0.00 3.02
152 153 5.674525 TGATGGCTTCGTAAATCTCAAGAT 58.325 37.500 0.00 0.00 36.07 2.40
153 154 5.525012 TGATGGCTTCGTAAATCTCAAGATG 59.475 40.000 0.00 0.00 34.49 2.90
154 155 5.084818 TGGCTTCGTAAATCTCAAGATGA 57.915 39.130 0.00 0.00 34.49 2.92
155 156 5.674525 TGGCTTCGTAAATCTCAAGATGAT 58.325 37.500 0.00 0.00 34.49 2.45
156 157 6.816136 TGGCTTCGTAAATCTCAAGATGATA 58.184 36.000 0.00 0.00 34.49 2.15
157 158 7.445121 TGGCTTCGTAAATCTCAAGATGATAT 58.555 34.615 0.00 0.00 34.49 1.63
158 159 7.386025 TGGCTTCGTAAATCTCAAGATGATATG 59.614 37.037 0.00 0.00 34.49 1.78
159 160 7.232994 GCTTCGTAAATCTCAAGATGATATGC 58.767 38.462 0.00 0.00 34.49 3.14
160 161 7.623089 GCTTCGTAAATCTCAAGATGATATGCC 60.623 40.741 0.00 0.00 34.49 4.40
161 162 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
162 163 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
163 164 4.630644 AATCTCAAGATGATATGCCGGT 57.369 40.909 1.90 0.00 34.49 5.28
164 165 4.630644 ATCTCAAGATGATATGCCGGTT 57.369 40.909 1.90 0.00 32.68 4.44
165 166 3.995199 TCTCAAGATGATATGCCGGTTC 58.005 45.455 1.90 0.00 0.00 3.62
166 167 3.387699 TCTCAAGATGATATGCCGGTTCA 59.612 43.478 1.90 1.91 0.00 3.18
167 168 3.732212 TCAAGATGATATGCCGGTTCAG 58.268 45.455 1.90 0.00 0.00 3.02
168 169 3.134623 TCAAGATGATATGCCGGTTCAGT 59.865 43.478 1.90 0.00 0.00 3.41
169 170 3.393089 AGATGATATGCCGGTTCAGTC 57.607 47.619 1.90 0.00 0.00 3.51
170 171 2.968574 AGATGATATGCCGGTTCAGTCT 59.031 45.455 1.90 4.63 0.00 3.24
171 172 3.389329 AGATGATATGCCGGTTCAGTCTT 59.611 43.478 1.90 0.00 0.00 3.01
172 173 3.627395 TGATATGCCGGTTCAGTCTTT 57.373 42.857 1.90 0.00 0.00 2.52
173 174 3.531538 TGATATGCCGGTTCAGTCTTTC 58.468 45.455 1.90 0.00 0.00 2.62
174 175 2.004583 TATGCCGGTTCAGTCTTTCG 57.995 50.000 1.90 0.00 0.00 3.46
175 176 0.673644 ATGCCGGTTCAGTCTTTCGG 60.674 55.000 1.90 0.00 43.13 4.30
176 177 1.005394 GCCGGTTCAGTCTTTCGGA 60.005 57.895 1.90 0.00 42.94 4.55
177 178 1.014564 GCCGGTTCAGTCTTTCGGAG 61.015 60.000 1.90 0.00 42.94 4.63
178 179 0.601558 CCGGTTCAGTCTTTCGGAGA 59.398 55.000 0.00 0.00 42.94 3.71
179 180 1.204941 CCGGTTCAGTCTTTCGGAGAT 59.795 52.381 0.00 0.00 42.94 2.75
180 181 2.263077 CGGTTCAGTCTTTCGGAGATG 58.737 52.381 0.00 0.00 36.61 2.90
181 182 2.003301 GGTTCAGTCTTTCGGAGATGC 58.997 52.381 0.00 0.00 36.61 3.91
182 183 2.354203 GGTTCAGTCTTTCGGAGATGCT 60.354 50.000 0.00 0.00 36.61 3.79
183 184 2.926838 GTTCAGTCTTTCGGAGATGCTC 59.073 50.000 0.00 0.00 36.61 4.26
184 185 2.171003 TCAGTCTTTCGGAGATGCTCA 58.829 47.619 0.00 0.00 36.61 4.26
185 186 2.762887 TCAGTCTTTCGGAGATGCTCAT 59.237 45.455 0.00 0.00 36.61 2.90
186 187 3.954258 TCAGTCTTTCGGAGATGCTCATA 59.046 43.478 0.00 0.00 36.61 2.15
187 188 4.037327 TCAGTCTTTCGGAGATGCTCATAG 59.963 45.833 0.00 0.00 36.61 2.23
188 189 3.957497 AGTCTTTCGGAGATGCTCATAGT 59.043 43.478 0.00 0.00 36.61 2.12
189 190 4.047822 GTCTTTCGGAGATGCTCATAGTG 58.952 47.826 0.00 0.00 36.61 2.74
190 191 3.701542 TCTTTCGGAGATGCTCATAGTGT 59.298 43.478 0.00 0.00 35.04 3.55
191 192 4.887655 TCTTTCGGAGATGCTCATAGTGTA 59.112 41.667 0.00 0.00 35.04 2.90
192 193 5.536538 TCTTTCGGAGATGCTCATAGTGTAT 59.463 40.000 0.00 0.00 35.04 2.29
193 194 4.773323 TCGGAGATGCTCATAGTGTATG 57.227 45.455 0.00 0.00 37.52 2.39
194 195 3.057245 TCGGAGATGCTCATAGTGTATGC 60.057 47.826 0.00 0.00 36.14 3.14
195 196 3.056962 CGGAGATGCTCATAGTGTATGCT 60.057 47.826 0.00 0.00 36.14 3.79
196 197 4.493547 GGAGATGCTCATAGTGTATGCTC 58.506 47.826 0.00 0.00 36.14 4.26
197 198 4.165036 GAGATGCTCATAGTGTATGCTCG 58.835 47.826 0.00 0.00 36.14 5.03
198 199 3.571828 AGATGCTCATAGTGTATGCTCGT 59.428 43.478 0.00 0.00 36.14 4.18
199 200 4.762251 AGATGCTCATAGTGTATGCTCGTA 59.238 41.667 0.00 0.00 36.14 3.43
200 201 5.417266 AGATGCTCATAGTGTATGCTCGTAT 59.583 40.000 0.00 0.00 36.14 3.06
201 202 6.599638 AGATGCTCATAGTGTATGCTCGTATA 59.400 38.462 0.00 0.00 36.14 1.47
202 203 6.759497 TGCTCATAGTGTATGCTCGTATAT 57.241 37.500 0.00 0.00 36.14 0.86
203 204 7.859325 TGCTCATAGTGTATGCTCGTATATA 57.141 36.000 0.00 0.00 36.14 0.86
204 205 8.451908 TGCTCATAGTGTATGCTCGTATATAT 57.548 34.615 0.00 0.00 36.14 0.86
205 206 8.345565 TGCTCATAGTGTATGCTCGTATATATG 58.654 37.037 0.00 0.00 36.14 1.78
206 207 8.560374 GCTCATAGTGTATGCTCGTATATATGA 58.440 37.037 4.59 4.59 36.14 2.15
216 217 4.476862 CTCGTATATATGAGCGCTTGTGT 58.523 43.478 13.26 4.27 33.10 3.72
217 218 4.473199 TCGTATATATGAGCGCTTGTGTC 58.527 43.478 13.26 0.00 0.00 3.67
218 219 4.215613 TCGTATATATGAGCGCTTGTGTCT 59.784 41.667 13.26 0.00 0.00 3.41
219 220 4.322009 CGTATATATGAGCGCTTGTGTCTG 59.678 45.833 13.26 0.00 0.00 3.51
220 221 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
221 222 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
222 223 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
223 224 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
224 225 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
225 226 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
226 227 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
227 228 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
228 229 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
229 230 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
230 231 3.673323 CGCTTGTGTCTGTACTGATGCTA 60.673 47.826 5.69 0.00 0.00 3.49
231 232 4.245660 GCTTGTGTCTGTACTGATGCTAA 58.754 43.478 5.69 0.07 0.00 3.09
232 233 4.690748 GCTTGTGTCTGTACTGATGCTAAA 59.309 41.667 5.69 0.00 0.00 1.85
317 319 4.514585 ACTTTGGTGTGCCCCGCA 62.515 61.111 0.00 0.00 35.60 5.69
499 504 1.449246 CCCCGCAGCAGAGAAGAAG 60.449 63.158 0.00 0.00 0.00 2.85
510 518 4.840005 GAAGAAGCCCCGCTCCCG 62.840 72.222 0.00 0.00 38.25 5.14
570 584 2.692741 CCAACCTCCCCCTCCCTC 60.693 72.222 0.00 0.00 0.00 4.30
571 585 2.692741 CAACCTCCCCCTCCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
1121 1286 2.827322 TCAACCTTCGATTTCTACGGGA 59.173 45.455 0.00 0.00 0.00 5.14
1124 1289 4.056092 ACCTTCGATTTCTACGGGATTC 57.944 45.455 0.00 0.00 0.00 2.52
1407 1576 2.512515 GTGTGGGCGATCTGGCTC 60.513 66.667 10.05 0.00 44.11 4.70
1458 1627 1.667724 CGGATTGCGAGCTCTGAAAAT 59.332 47.619 12.85 6.00 0.00 1.82
1460 1629 3.496130 CGGATTGCGAGCTCTGAAAATAT 59.504 43.478 12.85 0.00 0.00 1.28
1468 1637 3.212685 AGCTCTGAAAATATCTGCTGGC 58.787 45.455 0.00 0.00 31.96 4.85
1811 1983 3.672255 CTGCATTGACTTGGGCGCG 62.672 63.158 0.00 0.00 0.00 6.86
1841 2013 6.459710 GCAGTAAATTATAAGTTGGGCTGGTC 60.460 42.308 18.79 7.80 0.00 4.02
1862 2034 2.229784 CTGGTTTGCTTTAGGAGGCAAG 59.770 50.000 0.00 0.00 46.75 4.01
1866 2038 2.479566 TGCTTTAGGAGGCAAGTCAG 57.520 50.000 0.00 0.00 35.40 3.51
2067 2240 9.017669 CACTTATTGCTTTATTCTGCTTCATTC 57.982 33.333 0.00 0.00 0.00 2.67
2069 2242 9.798994 CTTATTGCTTTATTCTGCTTCATTCTT 57.201 29.630 0.00 0.00 0.00 2.52
2090 2264 5.721960 TCTTTATCTTGTTGCTCTCTACCCT 59.278 40.000 0.00 0.00 0.00 4.34
2294 2468 8.324163 ACTTGTATTTCTCCAAGACATAACAC 57.676 34.615 6.41 0.00 40.36 3.32
2310 2484 8.417106 AGACATAACACCTCTTCATACATACAG 58.583 37.037 0.00 0.00 0.00 2.74
2344 2519 0.321122 GAGGGAATAGCATGAGCCCG 60.321 60.000 0.00 0.00 43.64 6.13
2482 2657 2.798976 TGTGGATGTTTCTTGCTTGC 57.201 45.000 0.00 0.00 0.00 4.01
2483 2658 1.340889 TGTGGATGTTTCTTGCTTGCC 59.659 47.619 0.00 0.00 0.00 4.52
2492 2667 4.176271 GTTTCTTGCTTGCCATTCATACC 58.824 43.478 0.00 0.00 0.00 2.73
2506 2681 6.407299 GCCATTCATACCCTTGAACATCATTT 60.407 38.462 0.00 0.00 38.37 2.32
2508 2683 8.042515 CCATTCATACCCTTGAACATCATTTTT 58.957 33.333 0.00 0.00 38.37 1.94
2595 2770 2.643995 TGCATGATGTGGATACTGGG 57.356 50.000 0.00 0.00 37.61 4.45
2732 2907 1.264288 CAACTTGGAACTGAAGGCGAC 59.736 52.381 0.00 0.00 0.00 5.19
2788 2963 6.831353 TCCTTTGTTGTTTCTGTCATCCTTTA 59.169 34.615 0.00 0.00 0.00 1.85
2816 2991 4.882842 TTAGACACTGTGTGAAGCCATA 57.117 40.909 19.62 0.00 36.96 2.74
2817 2992 3.769739 AGACACTGTGTGAAGCCATAA 57.230 42.857 19.62 0.00 36.96 1.90
2818 2993 4.085357 AGACACTGTGTGAAGCCATAAA 57.915 40.909 19.62 0.00 36.96 1.40
2867 3042 8.715191 AGATGAAGCGGAATCAGATATTATTC 57.285 34.615 0.00 0.00 0.00 1.75
2945 3159 7.643579 AGTCAGAAGTTTAGTTCTTGAAATGC 58.356 34.615 0.00 0.00 34.38 3.56
2946 3160 7.283127 AGTCAGAAGTTTAGTTCTTGAAATGCA 59.717 33.333 0.00 0.00 34.38 3.96
3072 3286 6.264292 TGGCACAAGTTTATTTTCTAGCTTGA 59.736 34.615 8.77 0.00 37.39 3.02
3230 3444 3.877559 TCCTGGCATTGACATAACTCTG 58.122 45.455 0.00 0.00 0.00 3.35
3233 3447 4.511527 CTGGCATTGACATAACTCTGAGT 58.488 43.478 4.06 4.06 0.00 3.41
3275 3489 2.037902 TGCGGGTCATCAAGTTCTTGTA 59.962 45.455 11.52 1.12 0.00 2.41
3320 3534 4.887071 TCAGGTGTGTAACTGCAAATTTCT 59.113 37.500 0.00 0.00 38.04 2.52
3321 3535 5.359576 TCAGGTGTGTAACTGCAAATTTCTT 59.640 36.000 0.00 0.00 38.04 2.52
3368 3582 4.327680 ACAGGTGGCTAGTGAAGATTTTC 58.672 43.478 0.00 0.00 0.00 2.29
3386 3600 1.367346 TCTGCACCCAGGTCCATTTA 58.633 50.000 0.00 0.00 39.61 1.40
3390 3604 1.834188 CACCCAGGTCCATTTACACC 58.166 55.000 0.00 0.00 0.00 4.16
3466 3681 2.566952 AAACTCATTATGCGCCTTGC 57.433 45.000 4.18 0.00 46.70 4.01
3485 3700 1.401905 GCGGGATGAAATGTGAACCTC 59.598 52.381 0.00 0.00 0.00 3.85
3495 3710 2.940994 TGTGAACCTCCCAATTTCGA 57.059 45.000 0.00 0.00 0.00 3.71
3498 3713 0.727398 GAACCTCCCAATTTCGAGCG 59.273 55.000 0.00 0.00 0.00 5.03
3526 3774 2.041620 AGGAAGGTCCAAAATAGCAGCA 59.958 45.455 0.00 0.00 39.61 4.41
3611 3859 5.854866 CAGTTGCAAGTATCACTCAACATTG 59.145 40.000 6.43 2.02 36.17 2.82
3612 3860 5.532406 AGTTGCAAGTATCACTCAACATTGT 59.468 36.000 4.57 0.00 36.17 2.71
3672 3920 9.625747 AAAAATGTGATTAATTGACCCAAGTTT 57.374 25.926 0.00 0.00 0.00 2.66
3724 4018 4.222145 TGCCACTAGGAGTACCACTTAAAG 59.778 45.833 0.00 0.00 38.94 1.85
3793 4087 9.872721 CTCTTGTGCTCATGTAATATCATCTAT 57.127 33.333 0.00 0.00 0.00 1.98
3794 4088 9.649167 TCTTGTGCTCATGTAATATCATCTATG 57.351 33.333 0.00 0.00 0.00 2.23
3799 4093 9.440773 TGCTCATGTAATATCATCTATGGTTTC 57.559 33.333 0.00 0.00 0.00 2.78
3820 4114 8.141268 GGTTTCTCTTGGTTGATGTTTTATCAA 58.859 33.333 0.00 0.00 35.86 2.57
3836 4130 7.041372 TGTTTTATCAAAGTCCAGAAGTAGTGC 60.041 37.037 0.00 0.00 0.00 4.40
3845 4139 3.605749 GAAGTAGTGCCGCTGCCCA 62.606 63.158 0.00 0.00 36.33 5.36
3872 4166 9.979897 TTATGGAGCATATTTGGAGCTATTATT 57.020 29.630 0.00 0.00 39.02 1.40
3874 4168 9.979897 ATGGAGCATATTTGGAGCTATTATTAA 57.020 29.630 0.00 0.00 39.02 1.40
3875 4169 9.453572 TGGAGCATATTTGGAGCTATTATTAAG 57.546 33.333 0.00 0.00 39.02 1.85
3920 4226 6.128486 TGTGTTCCTGGACATGCATATTATT 58.872 36.000 0.00 0.00 0.00 1.40
3923 4229 7.981225 GTGTTCCTGGACATGCATATTATTTTT 59.019 33.333 0.00 0.00 0.00 1.94
3991 4298 9.887862 ATTCATCCATTCCCTTGTATTTCTATT 57.112 29.630 0.00 0.00 0.00 1.73
4106 4413 4.892934 ACTCCAGAACAGGTCAGATATCTC 59.107 45.833 1.03 0.00 0.00 2.75
4145 4452 9.865321 TGGTGTATACTCTGTAATAGTTCAAAC 57.135 33.333 4.17 0.00 0.00 2.93
4164 4471 5.463392 TCAAACGCTCATATGTTATGCTCTC 59.537 40.000 1.90 0.00 0.00 3.20
4172 4479 7.307278 GCTCATATGTTATGCTCTCTGAGTTTG 60.307 40.741 4.32 0.00 33.21 2.93
4195 4502 3.942829 TCTACTTCCATGTGCTTTCTGG 58.057 45.455 0.00 0.00 0.00 3.86
4204 4511 3.806949 TGTGCTTTCTGGTTTCCCTAT 57.193 42.857 0.00 0.00 0.00 2.57
4205 4512 4.112634 TGTGCTTTCTGGTTTCCCTATT 57.887 40.909 0.00 0.00 0.00 1.73
4206 4513 4.479158 TGTGCTTTCTGGTTTCCCTATTT 58.521 39.130 0.00 0.00 0.00 1.40
4235 4542 4.078537 TGTAATAAAGCTGCTTCCTTGCA 58.921 39.130 16.28 16.97 41.05 4.08
4237 4544 3.582714 ATAAAGCTGCTTCCTTGCAAC 57.417 42.857 16.28 0.00 42.83 4.17
4306 4613 8.085296 AGTCCTAATTGAGACTAATAAGCATCG 58.915 37.037 9.71 0.00 41.51 3.84
4312 4619 6.665992 TGAGACTAATAAGCATCGGGTTAT 57.334 37.500 0.00 0.00 46.65 1.89
4424 5143 5.803461 CACTGAATATTGTTGCACTTCCATG 59.197 40.000 0.00 0.00 0.00 3.66
4426 5145 5.712004 TGAATATTGTTGCACTTCCATGTG 58.288 37.500 0.00 0.00 40.62 3.21
4433 5152 4.180057 GTTGCACTTCCATGTGTTTGAAA 58.820 39.130 0.00 0.00 39.89 2.69
4434 5153 4.669206 TGCACTTCCATGTGTTTGAAAT 57.331 36.364 0.00 0.00 39.89 2.17
4472 5194 6.534475 TCAAATCTAATTGCTCATGCCTTT 57.466 33.333 0.00 0.00 38.71 3.11
4485 5207 4.602107 TCATGCCTTTCATTGGAATCAGA 58.398 39.130 0.00 0.00 31.79 3.27
4487 5209 5.659525 TCATGCCTTTCATTGGAATCAGATT 59.340 36.000 0.00 0.00 31.79 2.40
4488 5210 6.834969 TCATGCCTTTCATTGGAATCAGATTA 59.165 34.615 0.00 0.00 31.79 1.75
4489 5211 7.507956 TCATGCCTTTCATTGGAATCAGATTAT 59.492 33.333 0.00 0.00 31.79 1.28
4490 5212 7.664552 TGCCTTTCATTGGAATCAGATTATT 57.335 32.000 0.00 0.00 31.93 1.40
4492 5214 7.342541 TGCCTTTCATTGGAATCAGATTATTCA 59.657 33.333 0.00 0.00 37.56 2.57
4493 5215 7.650903 GCCTTTCATTGGAATCAGATTATTCAC 59.349 37.037 0.00 0.00 37.56 3.18
4494 5216 8.910944 CCTTTCATTGGAATCAGATTATTCACT 58.089 33.333 0.00 0.00 37.56 3.41
4523 5245 1.327303 GAATGGTTGTGGGCTTGTGA 58.673 50.000 0.00 0.00 0.00 3.58
4553 5275 1.065401 TGTTTTCAAGTGGCTTGCTCG 59.935 47.619 4.16 0.00 40.84 5.03
4559 5281 2.226437 TCAAGTGGCTTGCTCGATTTTC 59.774 45.455 4.16 0.00 40.84 2.29
4660 5383 6.350528 CCTTTCTGCAGATGTACTCTTCACTA 60.351 42.308 19.04 0.00 29.16 2.74
4690 5413 3.165071 TGTAGCTCTTCCAGATGTGACA 58.835 45.455 0.00 0.00 0.00 3.58
4765 5488 3.255642 TCTTGCAATTTCTTACACCAGCC 59.744 43.478 0.00 0.00 0.00 4.85
4785 5508 6.698766 CCAGCCTGTTATTTAATTCTGAATGC 59.301 38.462 3.22 0.00 0.00 3.56
4800 5523 2.369860 TGAATGCACCTCTTCACAGAGT 59.630 45.455 0.00 0.00 44.85 3.24
4926 5649 8.917088 ACATAGTTTCTAAAGCCATATGCATTT 58.083 29.630 3.54 0.00 44.83 2.32
4952 5675 8.783093 TCTAACTTTCAATACACATCAGTTTGG 58.217 33.333 0.00 0.00 0.00 3.28
4962 5685 2.289195 ACATCAGTTTGGGCATTTGCTG 60.289 45.455 2.12 0.00 41.70 4.41
4969 5692 3.557228 TTGGGCATTTGCTGTTTCTTT 57.443 38.095 2.12 0.00 41.70 2.52
4972 5695 5.226194 TGGGCATTTGCTGTTTCTTTTAT 57.774 34.783 2.12 0.00 41.70 1.40
5065 5788 7.403312 TTCGGTGAATTGAATAAACATGGAT 57.597 32.000 0.00 0.00 0.00 3.41
5095 5819 2.961062 AGCAATTCTCTGTTGGCAGTTT 59.039 40.909 0.00 0.00 43.05 2.66
5125 5849 2.022195 CATCTGTCCTTGCTTCCATGG 58.978 52.381 4.97 4.97 37.56 3.66
5150 5874 2.488153 GTTGGGAACAGTCATGCTTACC 59.512 50.000 0.00 0.00 44.54 2.85
5157 5881 4.207891 ACAGTCATGCTTACCTAACCTG 57.792 45.455 0.00 0.00 0.00 4.00
5162 5886 2.871096 TGCTTACCTAACCTGTTGGG 57.129 50.000 10.51 10.51 45.46 4.12
5164 5888 1.004394 GCTTACCTAACCTGTTGGGCT 59.996 52.381 11.84 3.30 44.03 5.19
5168 5892 0.108138 CCTAACCTGTTGGGCTCTCG 60.108 60.000 0.00 0.00 39.10 4.04
5177 5901 0.250234 TTGGGCTCTCGGATGTCTTG 59.750 55.000 0.00 0.00 0.00 3.02
5189 5913 0.257039 ATGTCTTGCTTGGGCTAGGG 59.743 55.000 0.00 0.00 40.66 3.53
5222 5946 4.038642 GGGATGTTTTGGTGTCTGCTTTAA 59.961 41.667 0.00 0.00 0.00 1.52
5224 5948 5.691754 GGATGTTTTGGTGTCTGCTTTAAAG 59.308 40.000 11.02 11.02 0.00 1.85
5226 5950 6.274157 TGTTTTGGTGTCTGCTTTAAAGAA 57.726 33.333 19.48 7.64 0.00 2.52
5227 5951 6.096695 TGTTTTGGTGTCTGCTTTAAAGAAC 58.903 36.000 19.48 12.83 0.00 3.01
5232 5956 6.872920 TGGTGTCTGCTTTAAAGAACAAAAT 58.127 32.000 19.48 0.00 0.00 1.82
5233 5957 7.327214 TGGTGTCTGCTTTAAAGAACAAAATT 58.673 30.769 19.48 0.00 0.00 1.82
5234 5958 7.821846 TGGTGTCTGCTTTAAAGAACAAAATTT 59.178 29.630 19.48 0.00 0.00 1.82
5292 6018 6.674066 TGTTCTTTTCTTTTTGTTGACGTCT 58.326 32.000 17.92 0.00 0.00 4.18
5322 6048 2.094182 ACGATCTGAATACAAGGCACGT 60.094 45.455 0.00 0.00 0.00 4.49
5426 6154 2.029649 ACAGTTTCAGATTGCATGGTGC 60.030 45.455 0.00 0.00 45.29 5.01
5465 6193 3.529533 TGGGTTTGTTCAACAATGCTTG 58.470 40.909 3.17 0.00 38.00 4.01
5471 6199 6.533367 GGTTTGTTCAACAATGCTTGACTTTA 59.467 34.615 3.17 0.00 38.00 1.85
5668 6396 8.710835 TTTTTGACTAACCACAAAGGAAATTC 57.289 30.769 0.00 0.00 41.22 2.17
5704 6432 3.072476 ACCCAACCATCTCTTCGAAAAGA 59.928 43.478 3.17 3.17 39.22 2.52
5726 6454 2.638363 AGTAGAGTGGACAAAGAACCCC 59.362 50.000 0.00 0.00 0.00 4.95
5904 6633 9.614792 AATAAAATGTGTCCTGTAATCCTCTAC 57.385 33.333 0.00 0.00 0.00 2.59
5910 6639 2.090719 TCCTGTAATCCTCTACCCTGGG 60.091 54.545 12.28 12.28 0.00 4.45
5911 6640 2.090719 CCTGTAATCCTCTACCCTGGGA 60.091 54.545 22.23 1.88 0.00 4.37
6119 6851 6.454795 TCTTTTCTTTGATGGCAAACATACC 58.545 36.000 0.00 0.00 40.72 2.73
6175 6907 0.250209 GCTCGGTCATCCATCATGCT 60.250 55.000 0.00 0.00 31.70 3.79
6212 6944 6.942005 TGACAAATCATAAGGACAAGTGTGAT 59.058 34.615 0.00 0.00 0.00 3.06
6221 6953 4.636249 AGGACAAGTGTGATGAGTCTTTC 58.364 43.478 0.00 0.00 0.00 2.62
6238 6970 2.490328 TTCCTTTTGAAGCTTGTGCG 57.510 45.000 2.10 0.00 45.42 5.34
6253 6985 1.089920 GTGCGTCAATCTGAATGGCT 58.910 50.000 0.00 0.00 0.00 4.75
6258 6990 2.733552 CGTCAATCTGAATGGCTATCCG 59.266 50.000 0.00 0.00 34.14 4.18
6329 7061 1.978542 AGTACAGTTGACGCGTCATC 58.021 50.000 39.38 35.74 39.64 2.92
6330 7062 1.268625 AGTACAGTTGACGCGTCATCA 59.731 47.619 37.60 26.24 39.64 3.07
6331 7063 2.094700 AGTACAGTTGACGCGTCATCAT 60.095 45.455 37.60 29.82 39.64 2.45
6332 7064 2.647529 ACAGTTGACGCGTCATCATA 57.352 45.000 37.60 25.28 39.64 2.15
6334 7066 4.301637 ACAGTTGACGCGTCATCATATA 57.698 40.909 37.60 24.31 39.64 0.86
6335 7067 4.042398 ACAGTTGACGCGTCATCATATAC 58.958 43.478 37.60 31.43 39.64 1.47
6336 7068 4.041723 CAGTTGACGCGTCATCATATACA 58.958 43.478 37.60 23.03 39.64 2.29
6396 7128 7.874528 ACATTGATCCAGAAGAAACAAAAATCC 59.125 33.333 0.00 0.00 31.79 3.01
6434 7166 4.083324 TGTTCAGAATTCAGTGCCGAAATC 60.083 41.667 8.44 0.00 0.00 2.17
6469 7201 3.646637 CCCCGTCCAAGGATTTACTAGAT 59.353 47.826 0.00 0.00 0.00 1.98
6497 7229 0.901124 ACCTGGAGCAACTCTAGCAG 59.099 55.000 0.00 0.00 37.69 4.24
6518 7250 5.182760 GCAGATTCCATAAATCACTCATCCC 59.817 44.000 1.07 0.00 45.34 3.85
6530 7262 2.034558 CACTCATCCCTTTGCACGTTTT 59.965 45.455 0.00 0.00 0.00 2.43
6590 7322 0.949105 ACGGCCTAGTCAGCAAAACG 60.949 55.000 0.00 0.00 0.00 3.60
6591 7323 0.949105 CGGCCTAGTCAGCAAAACGT 60.949 55.000 0.00 0.00 0.00 3.99
6606 7338 1.974973 AACGTGACCCAACCGTCCTT 61.975 55.000 0.00 0.00 32.95 3.36
6622 7354 1.454539 CTTCCCAAACTGACCCCGT 59.545 57.895 0.00 0.00 0.00 5.28
6624 7356 1.072648 CTTCCCAAACTGACCCCGTAA 59.927 52.381 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.139520 GGTTGATTCGCATGGGCAC 59.860 57.895 4.59 0.00 41.24 5.01
1 2 1.001020 AGGTTGATTCGCATGGGCA 60.001 52.632 4.59 0.00 41.24 5.36
2 3 1.315257 ACAGGTTGATTCGCATGGGC 61.315 55.000 4.59 0.00 0.00 5.36
3 4 0.452987 CACAGGTTGATTCGCATGGG 59.547 55.000 2.76 2.76 0.00 4.00
4 5 0.452987 CCACAGGTTGATTCGCATGG 59.547 55.000 0.00 0.00 0.00 3.66
5 6 1.167851 ACCACAGGTTGATTCGCATG 58.832 50.000 0.00 0.00 27.29 4.06
6 7 1.909700 AACCACAGGTTGATTCGCAT 58.090 45.000 0.00 0.00 45.07 4.73
7 8 3.412722 AACCACAGGTTGATTCGCA 57.587 47.368 0.00 0.00 45.07 5.10
16 17 2.305927 CCTAACCATCTCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
17 18 2.305927 ACCTAACCATCTCAACCACAGG 59.694 50.000 0.00 0.00 0.00 4.00
18 19 3.338249 CACCTAACCATCTCAACCACAG 58.662 50.000 0.00 0.00 0.00 3.66
19 20 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
20 21 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
21 22 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
22 23 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
23 24 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
24 25 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
25 26 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
26 27 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
27 28 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
28 29 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
29 30 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
30 31 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
31 32 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
32 33 3.105283 AGGATACCACTGTCCACCTAAC 58.895 50.000 0.00 0.00 36.96 2.34
33 34 3.245839 TGAGGATACCACTGTCCACCTAA 60.246 47.826 0.00 0.00 36.96 2.69
34 35 2.313643 TGAGGATACCACTGTCCACCTA 59.686 50.000 0.00 0.00 36.96 3.08
35 36 1.078823 TGAGGATACCACTGTCCACCT 59.921 52.381 0.00 0.00 36.96 4.00
36 37 1.568504 TGAGGATACCACTGTCCACC 58.431 55.000 0.00 0.00 36.96 4.61
37 38 2.354805 GGTTGAGGATACCACTGTCCAC 60.355 54.545 0.00 0.00 36.96 4.02
38 39 1.906574 GGTTGAGGATACCACTGTCCA 59.093 52.381 0.00 0.00 36.96 4.02
39 40 1.209747 GGGTTGAGGATACCACTGTCC 59.790 57.143 0.00 0.00 37.40 4.02
40 41 1.906574 TGGGTTGAGGATACCACTGTC 59.093 52.381 0.00 0.00 37.40 3.51
41 42 2.038863 TGGGTTGAGGATACCACTGT 57.961 50.000 0.00 0.00 37.40 3.55
42 43 2.505407 TGATGGGTTGAGGATACCACTG 59.495 50.000 0.00 0.00 37.40 3.66
43 44 2.774234 CTGATGGGTTGAGGATACCACT 59.226 50.000 0.00 0.00 37.40 4.00
44 45 2.158755 CCTGATGGGTTGAGGATACCAC 60.159 54.545 0.00 0.00 37.40 4.16
45 46 2.126882 CCTGATGGGTTGAGGATACCA 58.873 52.381 0.00 0.00 37.40 3.25
46 47 2.938956 CCTGATGGGTTGAGGATACC 57.061 55.000 0.00 0.00 34.82 2.73
63 64 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
64 65 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
65 66 1.541588 GTGAGCACCAGGATTTGAACC 59.458 52.381 0.00 0.00 0.00 3.62
66 67 2.229792 TGTGAGCACCAGGATTTGAAC 58.770 47.619 0.00 0.00 0.00 3.18
67 68 2.655090 TGTGAGCACCAGGATTTGAA 57.345 45.000 0.00 0.00 0.00 2.69
68 69 2.885135 ATGTGAGCACCAGGATTTGA 57.115 45.000 0.00 0.00 0.00 2.69
69 70 5.587388 AATAATGTGAGCACCAGGATTTG 57.413 39.130 0.00 0.00 0.00 2.32
70 71 5.954150 AGAAATAATGTGAGCACCAGGATTT 59.046 36.000 0.00 0.11 0.00 2.17
71 72 5.359009 CAGAAATAATGTGAGCACCAGGATT 59.641 40.000 0.00 0.00 0.00 3.01
72 73 4.885907 CAGAAATAATGTGAGCACCAGGAT 59.114 41.667 0.00 0.00 0.00 3.24
73 74 4.019411 TCAGAAATAATGTGAGCACCAGGA 60.019 41.667 0.00 0.00 0.00 3.86
74 75 4.264253 TCAGAAATAATGTGAGCACCAGG 58.736 43.478 0.00 0.00 0.00 4.45
75 76 5.885230 TTCAGAAATAATGTGAGCACCAG 57.115 39.130 0.00 0.00 32.17 4.00
76 77 6.839124 AATTCAGAAATAATGTGAGCACCA 57.161 33.333 0.00 0.00 32.17 4.17
77 78 9.807649 AATAAATTCAGAAATAATGTGAGCACC 57.192 29.630 0.00 0.00 32.17 5.01
94 95 6.661377 TCACCGGAAATCCTGAAATAAATTCA 59.339 34.615 9.46 0.00 45.71 2.57
95 96 7.095695 TCACCGGAAATCCTGAAATAAATTC 57.904 36.000 9.46 0.00 38.60 2.17
96 97 7.417797 CCATCACCGGAAATCCTGAAATAAATT 60.418 37.037 9.46 0.00 0.00 1.82
97 98 6.040842 CCATCACCGGAAATCCTGAAATAAAT 59.959 38.462 9.46 0.00 0.00 1.40
98 99 5.359576 CCATCACCGGAAATCCTGAAATAAA 59.640 40.000 9.46 0.00 0.00 1.40
99 100 4.887071 CCATCACCGGAAATCCTGAAATAA 59.113 41.667 9.46 0.00 0.00 1.40
100 101 4.460263 CCATCACCGGAAATCCTGAAATA 58.540 43.478 9.46 0.00 0.00 1.40
101 102 3.290710 CCATCACCGGAAATCCTGAAAT 58.709 45.455 9.46 0.00 0.00 2.17
102 103 2.722094 CCATCACCGGAAATCCTGAAA 58.278 47.619 9.46 0.00 0.00 2.69
103 104 1.681780 GCCATCACCGGAAATCCTGAA 60.682 52.381 9.46 0.00 0.00 3.02
104 105 0.107214 GCCATCACCGGAAATCCTGA 60.107 55.000 9.46 0.00 0.00 3.86
105 106 1.439353 CGCCATCACCGGAAATCCTG 61.439 60.000 9.46 0.00 0.00 3.86
106 107 1.153168 CGCCATCACCGGAAATCCT 60.153 57.895 9.46 0.00 0.00 3.24
107 108 1.436983 GACGCCATCACCGGAAATCC 61.437 60.000 9.46 0.00 0.00 3.01
108 109 0.462047 AGACGCCATCACCGGAAATC 60.462 55.000 9.46 0.00 0.00 2.17
109 110 0.828022 TAGACGCCATCACCGGAAAT 59.172 50.000 9.46 0.00 0.00 2.17
110 111 0.828022 ATAGACGCCATCACCGGAAA 59.172 50.000 9.46 0.00 0.00 3.13
111 112 0.104120 CATAGACGCCATCACCGGAA 59.896 55.000 9.46 0.00 0.00 4.30
112 113 0.753848 TCATAGACGCCATCACCGGA 60.754 55.000 9.46 0.00 0.00 5.14
113 114 0.318441 ATCATAGACGCCATCACCGG 59.682 55.000 0.00 0.00 0.00 5.28
114 115 1.422388 CATCATAGACGCCATCACCG 58.578 55.000 0.00 0.00 0.00 4.94
115 116 1.800805 CCATCATAGACGCCATCACC 58.199 55.000 0.00 0.00 0.00 4.02
116 117 1.151668 GCCATCATAGACGCCATCAC 58.848 55.000 0.00 0.00 0.00 3.06
117 118 1.051008 AGCCATCATAGACGCCATCA 58.949 50.000 0.00 0.00 0.00 3.07
118 119 2.072298 GAAGCCATCATAGACGCCATC 58.928 52.381 0.00 0.00 0.00 3.51
119 120 1.606480 CGAAGCCATCATAGACGCCAT 60.606 52.381 0.00 0.00 0.00 4.40
120 121 0.249447 CGAAGCCATCATAGACGCCA 60.249 55.000 0.00 0.00 0.00 5.69
121 122 0.249489 ACGAAGCCATCATAGACGCC 60.249 55.000 0.00 0.00 0.00 5.68
122 123 2.417339 TACGAAGCCATCATAGACGC 57.583 50.000 0.00 0.00 0.00 5.19
123 124 5.223382 AGATTTACGAAGCCATCATAGACG 58.777 41.667 0.00 0.00 0.00 4.18
124 125 6.216569 TGAGATTTACGAAGCCATCATAGAC 58.783 40.000 0.00 0.00 0.00 2.59
125 126 6.405278 TGAGATTTACGAAGCCATCATAGA 57.595 37.500 0.00 0.00 0.00 1.98
126 127 6.925718 TCTTGAGATTTACGAAGCCATCATAG 59.074 38.462 0.00 0.00 0.00 2.23
127 128 6.816136 TCTTGAGATTTACGAAGCCATCATA 58.184 36.000 0.00 0.00 0.00 2.15
128 129 5.674525 TCTTGAGATTTACGAAGCCATCAT 58.325 37.500 0.00 0.00 0.00 2.45
129 130 5.084818 TCTTGAGATTTACGAAGCCATCA 57.915 39.130 0.00 0.00 0.00 3.07
130 131 5.755375 TCATCTTGAGATTTACGAAGCCATC 59.245 40.000 0.00 0.00 31.21 3.51
131 132 5.674525 TCATCTTGAGATTTACGAAGCCAT 58.325 37.500 0.00 0.00 31.21 4.40
132 133 5.084818 TCATCTTGAGATTTACGAAGCCA 57.915 39.130 0.00 0.00 31.21 4.75
133 134 7.623089 GCATATCATCTTGAGATTTACGAAGCC 60.623 40.741 0.00 0.00 31.21 4.35
134 135 7.232994 GCATATCATCTTGAGATTTACGAAGC 58.767 38.462 0.00 0.00 31.21 3.86
135 136 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
136 137 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
137 138 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
138 139 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
139 140 5.934625 ACCGGCATATCATCTTGAGATTTAC 59.065 40.000 0.00 0.00 31.21 2.01
140 141 6.114187 ACCGGCATATCATCTTGAGATTTA 57.886 37.500 0.00 0.00 31.21 1.40
141 142 4.978099 ACCGGCATATCATCTTGAGATTT 58.022 39.130 0.00 0.00 31.21 2.17
142 143 4.630644 ACCGGCATATCATCTTGAGATT 57.369 40.909 0.00 0.00 31.21 2.40
143 144 4.040829 TGAACCGGCATATCATCTTGAGAT 59.959 41.667 0.00 0.00 34.56 2.75
144 145 3.387699 TGAACCGGCATATCATCTTGAGA 59.612 43.478 0.00 0.00 0.00 3.27
145 146 3.732212 TGAACCGGCATATCATCTTGAG 58.268 45.455 0.00 0.00 0.00 3.02
146 147 3.134623 ACTGAACCGGCATATCATCTTGA 59.865 43.478 0.00 0.00 0.00 3.02
147 148 3.470709 ACTGAACCGGCATATCATCTTG 58.529 45.455 0.00 0.00 0.00 3.02
148 149 3.389329 AGACTGAACCGGCATATCATCTT 59.611 43.478 0.00 0.00 0.00 2.40
149 150 2.968574 AGACTGAACCGGCATATCATCT 59.031 45.455 0.00 4.23 0.00 2.90
150 151 3.393089 AGACTGAACCGGCATATCATC 57.607 47.619 0.00 2.11 0.00 2.92
151 152 3.845781 AAGACTGAACCGGCATATCAT 57.154 42.857 0.00 0.00 0.00 2.45
152 153 3.531538 GAAAGACTGAACCGGCATATCA 58.468 45.455 0.00 0.00 0.00 2.15
153 154 2.540101 CGAAAGACTGAACCGGCATATC 59.460 50.000 0.00 0.00 0.00 1.63
154 155 2.550978 CGAAAGACTGAACCGGCATAT 58.449 47.619 0.00 0.00 0.00 1.78
155 156 1.404986 CCGAAAGACTGAACCGGCATA 60.405 52.381 0.00 0.00 33.47 3.14
156 157 0.673644 CCGAAAGACTGAACCGGCAT 60.674 55.000 0.00 0.00 33.47 4.40
157 158 1.301401 CCGAAAGACTGAACCGGCA 60.301 57.895 0.00 0.00 33.47 5.69
158 159 1.005394 TCCGAAAGACTGAACCGGC 60.005 57.895 0.00 0.00 39.96 6.13
159 160 0.601558 TCTCCGAAAGACTGAACCGG 59.398 55.000 0.00 0.00 41.36 5.28
160 161 2.263077 CATCTCCGAAAGACTGAACCG 58.737 52.381 0.00 0.00 36.65 4.44
161 162 2.003301 GCATCTCCGAAAGACTGAACC 58.997 52.381 0.00 0.00 36.65 3.62
162 163 2.926838 GAGCATCTCCGAAAGACTGAAC 59.073 50.000 0.00 0.00 36.65 3.18
163 164 2.562738 TGAGCATCTCCGAAAGACTGAA 59.437 45.455 0.00 0.00 36.65 3.02
164 165 2.171003 TGAGCATCTCCGAAAGACTGA 58.829 47.619 0.00 0.00 36.65 3.41
165 166 2.662006 TGAGCATCTCCGAAAGACTG 57.338 50.000 0.00 0.00 36.65 3.51
166 167 3.957497 ACTATGAGCATCTCCGAAAGACT 59.043 43.478 0.00 0.00 36.65 3.24
167 168 4.047822 CACTATGAGCATCTCCGAAAGAC 58.952 47.826 0.00 0.00 36.65 3.01
168 169 3.701542 ACACTATGAGCATCTCCGAAAGA 59.298 43.478 0.00 0.00 38.72 2.52
169 170 4.052159 ACACTATGAGCATCTCCGAAAG 57.948 45.455 0.00 0.00 34.92 2.62
170 171 5.532557 CATACACTATGAGCATCTCCGAAA 58.467 41.667 0.00 0.00 38.45 3.46
171 172 4.559502 GCATACACTATGAGCATCTCCGAA 60.560 45.833 0.00 0.00 38.45 4.30
172 173 3.057245 GCATACACTATGAGCATCTCCGA 60.057 47.826 0.00 0.00 38.45 4.55
173 174 3.056962 AGCATACACTATGAGCATCTCCG 60.057 47.826 0.00 0.00 38.45 4.63
174 175 4.493547 GAGCATACACTATGAGCATCTCC 58.506 47.826 0.00 0.00 38.45 3.71
175 176 4.165036 CGAGCATACACTATGAGCATCTC 58.835 47.826 0.00 0.00 38.45 2.75
176 177 3.571828 ACGAGCATACACTATGAGCATCT 59.428 43.478 0.00 0.00 38.45 2.90
177 178 3.906998 ACGAGCATACACTATGAGCATC 58.093 45.455 0.00 0.00 38.45 3.91
178 179 5.651387 ATACGAGCATACACTATGAGCAT 57.349 39.130 0.00 0.00 38.45 3.79
179 180 6.759497 ATATACGAGCATACACTATGAGCA 57.241 37.500 0.00 0.00 38.45 4.26
180 181 8.560374 TCATATATACGAGCATACACTATGAGC 58.440 37.037 0.00 0.00 38.45 4.26
194 195 4.476862 ACACAAGCGCTCATATATACGAG 58.523 43.478 12.06 1.36 0.00 4.18
195 196 4.215613 AGACACAAGCGCTCATATATACGA 59.784 41.667 12.06 0.00 0.00 3.43
196 197 4.322009 CAGACACAAGCGCTCATATATACG 59.678 45.833 12.06 0.00 0.00 3.06
197 198 5.223382 ACAGACACAAGCGCTCATATATAC 58.777 41.667 12.06 0.00 0.00 1.47
198 199 5.453567 ACAGACACAAGCGCTCATATATA 57.546 39.130 12.06 0.00 0.00 0.86
199 200 4.327982 ACAGACACAAGCGCTCATATAT 57.672 40.909 12.06 0.00 0.00 0.86
200 201 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
201 202 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
202 203 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
203 204 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
204 205 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
205 206 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
206 207 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
207 208 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
208 209 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
209 210 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
210 211 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
232 233 4.081322 TCTTCTACGGGCACTTCTTTTT 57.919 40.909 0.00 0.00 0.00 1.94
243 244 2.810650 CCGTCTGAATTCTTCTACGGG 58.189 52.381 22.54 11.58 46.54 5.28
248 249 1.625818 AGGCACCGTCTGAATTCTTCT 59.374 47.619 7.05 0.00 0.00 2.85
251 252 3.695830 TTTAGGCACCGTCTGAATTCT 57.304 42.857 7.05 0.00 0.00 2.40
567 581 2.042435 AGAAGCGAGGGAGGGAGG 60.042 66.667 0.00 0.00 0.00 4.30
568 582 2.131067 GGAGAAGCGAGGGAGGGAG 61.131 68.421 0.00 0.00 0.00 4.30
569 583 2.042843 GGAGAAGCGAGGGAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
570 584 3.157949 GGGAGAAGCGAGGGAGGG 61.158 72.222 0.00 0.00 0.00 4.30
571 585 3.157949 GGGGAGAAGCGAGGGAGG 61.158 72.222 0.00 0.00 0.00 4.30
908 1057 0.035439 GGAACGGAGAAGGCAATGGA 60.035 55.000 0.00 0.00 0.00 3.41
1079 1244 2.123033 GAGAGAGGGGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
1081 1246 2.612251 GGGAGAGAGGGGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
1082 1247 3.036959 GGGGAGAGAGGGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
1084 1249 1.891296 TTGAGGGGAGAGAGGGGGAG 61.891 65.000 0.00 0.00 0.00 4.30
1085 1250 1.866997 TTGAGGGGAGAGAGGGGGA 60.867 63.158 0.00 0.00 0.00 4.81
1086 1251 1.690985 GTTGAGGGGAGAGAGGGGG 60.691 68.421 0.00 0.00 0.00 5.40
1087 1252 1.690985 GGTTGAGGGGAGAGAGGGG 60.691 68.421 0.00 0.00 0.00 4.79
1091 1256 0.408309 TCGAAGGTTGAGGGGAGAGA 59.592 55.000 0.00 0.00 0.00 3.10
1231 1396 4.361971 ACGAGTCCCGCTCCTCCA 62.362 66.667 0.00 0.00 43.32 3.86
1407 1576 2.878406 ACCAAATCACACAAACTCGGAG 59.122 45.455 2.83 2.83 0.00 4.63
1458 1627 2.566833 AACAACACAGCCAGCAGATA 57.433 45.000 0.00 0.00 0.00 1.98
1460 1629 1.473258 AAAACAACACAGCCAGCAGA 58.527 45.000 0.00 0.00 0.00 4.26
1494 1663 1.876714 CGGTATCAACGACGGCTGG 60.877 63.158 0.00 0.00 0.00 4.85
1623 1792 2.625737 CTGGTCATGTTGCAGAGGTAG 58.374 52.381 0.00 0.00 0.00 3.18
1684 1853 6.248569 TGAACTAAACCCTCTCAAGAGTTT 57.751 37.500 6.30 4.85 40.48 2.66
1761 1931 8.349983 ACAAGTTACATTTACAGACAAACATCC 58.650 33.333 0.00 0.00 0.00 3.51
1811 1983 7.282450 AGCCCAACTTATAATTTACTGCTGTAC 59.718 37.037 2.52 0.00 0.00 2.90
1824 1996 2.916934 ACCAGACCAGCCCAACTTATAA 59.083 45.455 0.00 0.00 0.00 0.98
1841 2013 1.909700 TGCCTCCTAAAGCAAACCAG 58.090 50.000 0.00 0.00 35.69 4.00
1862 2034 8.181573 TCAATAAACAACTTTTGACTGTCTGAC 58.818 33.333 9.51 0.00 0.00 3.51
1866 2038 6.918022 CCCTCAATAAACAACTTTTGACTGTC 59.082 38.462 0.00 0.00 0.00 3.51
2067 2240 5.983540 AGGGTAGAGAGCAACAAGATAAAG 58.016 41.667 0.00 0.00 0.00 1.85
2069 2242 6.374417 AAAGGGTAGAGAGCAACAAGATAA 57.626 37.500 0.00 0.00 0.00 1.75
2294 2468 4.696479 AAGGCCTGTATGTATGAAGAGG 57.304 45.455 5.69 0.00 0.00 3.69
2310 2484 6.405953 GCTATTCCCTCTTAAAAGAAAAGGCC 60.406 42.308 0.00 0.00 34.03 5.19
2462 2637 2.224018 GGCAAGCAAGAAACATCCACAA 60.224 45.455 0.00 0.00 0.00 3.33
2474 2649 2.381911 AGGGTATGAATGGCAAGCAAG 58.618 47.619 0.00 0.00 0.00 4.01
2482 2657 6.720112 AATGATGTTCAAGGGTATGAATGG 57.280 37.500 0.00 0.00 41.09 3.16
2508 2683 8.677300 GGATGCAGATCATAGTTAAGAAACAAA 58.323 33.333 0.00 0.00 35.21 2.83
2595 2770 1.275573 GGGTCTACCACTCCAACTGTC 59.724 57.143 0.81 0.00 39.85 3.51
2607 2782 1.677637 CCGCCTCAGAAGGGTCTACC 61.678 65.000 0.00 0.00 43.58 3.18
2732 2907 6.542005 TCAACTGTATACCTTTGCACCATATG 59.458 38.462 0.00 0.00 0.00 1.78
2788 2963 6.149474 GGCTTCACACAGTGTCTAAACAATAT 59.851 38.462 2.14 0.00 37.08 1.28
2829 3004 9.725019 ATTCCGCTTCATCTTATATCATAACAA 57.275 29.630 0.00 0.00 0.00 2.83
2843 3018 7.914465 GGAATAATATCTGATTCCGCTTCATC 58.086 38.462 0.00 0.00 41.23 2.92
2867 3042 6.698008 TCTGGTATAGCAAAATGTTGATGG 57.302 37.500 6.04 0.00 36.83 3.51
2931 3145 7.809331 GTCAATGACAATGCATTTCAAGAACTA 59.191 33.333 20.54 7.67 36.39 2.24
2945 3159 6.558771 TTACACTCAAGGTCAATGACAATG 57.441 37.500 15.86 12.67 33.68 2.82
2946 3160 7.765695 ATTTACACTCAAGGTCAATGACAAT 57.234 32.000 15.86 0.00 33.68 2.71
3028 3242 6.824196 TGTGCCAATACGTTCCATCTATTAAA 59.176 34.615 0.00 0.00 0.00 1.52
3043 3257 8.244113 AGCTAGAAAATAAACTTGTGCCAATAC 58.756 33.333 0.00 0.00 0.00 1.89
3044 3258 8.348285 AGCTAGAAAATAAACTTGTGCCAATA 57.652 30.769 0.00 0.00 0.00 1.90
3101 3315 5.008019 TCTCTTGATCTATGATTTTTGCGGC 59.992 40.000 0.00 0.00 0.00 6.53
3230 3444 0.976641 TCCATGTGTCACCCTCACTC 59.023 55.000 0.00 0.00 36.83 3.51
3233 3447 1.361204 ACATCCATGTGTCACCCTCA 58.639 50.000 0.00 0.00 40.03 3.86
3275 3489 4.927267 TGTATGACCAGGAGTTTCCATT 57.073 40.909 0.00 0.00 39.61 3.16
3320 3534 5.505780 AGCTAACCCAATACAGCACAATAA 58.494 37.500 0.00 0.00 36.47 1.40
3321 3535 5.110814 AGCTAACCCAATACAGCACAATA 57.889 39.130 0.00 0.00 36.47 1.90
3408 3622 8.946085 TGAGAACTTACTATTGCGATTTTTGAT 58.054 29.630 0.00 0.00 0.00 2.57
3417 3631 8.660373 AGATTTTTCTGAGAACTTACTATTGCG 58.340 33.333 0.00 0.00 0.00 4.85
3466 3681 2.017049 GGAGGTTCACATTTCATCCCG 58.983 52.381 0.00 0.00 0.00 5.14
3485 3700 1.804151 TGTCTTTCGCTCGAAATTGGG 59.196 47.619 16.38 6.64 42.34 4.12
3495 3710 0.321996 GGACCTTCCTGTCTTTCGCT 59.678 55.000 0.00 0.00 35.54 4.93
3498 3713 5.106118 GCTATTTTGGACCTTCCTGTCTTTC 60.106 44.000 0.00 0.00 37.46 2.62
3658 3906 7.201938 CCAGATGCATATAAACTTGGGTCAATT 60.202 37.037 0.00 0.00 0.00 2.32
3663 3911 4.473444 CCCAGATGCATATAAACTTGGGT 58.527 43.478 0.00 0.00 0.00 4.51
3672 3920 4.428570 TCAGATGACCCCAGATGCATATA 58.571 43.478 0.00 0.00 0.00 0.86
3701 3952 2.320681 AAGTGGTACTCCTAGTGGCA 57.679 50.000 0.00 0.00 34.23 4.92
3740 4034 9.528489 AAGGTAAGGAAAGCAATTTAGAATGTA 57.472 29.630 0.00 0.00 0.00 2.29
3793 4087 5.930837 AAAACATCAACCAAGAGAAACCA 57.069 34.783 0.00 0.00 0.00 3.67
3794 4088 7.657336 TGATAAAACATCAACCAAGAGAAACC 58.343 34.615 0.00 0.00 0.00 3.27
3799 4093 7.809806 GGACTTTGATAAAACATCAACCAAGAG 59.190 37.037 0.00 0.00 37.71 2.85
3820 4114 0.037232 GCGGCACTACTTCTGGACTT 60.037 55.000 0.00 0.00 0.00 3.01
3836 4130 2.263741 GCTCCATAATGGGCAGCGG 61.264 63.158 0.00 0.00 38.32 5.52
3871 4165 8.946085 CAACATAACAACTATGAGAAGCCTTAA 58.054 33.333 0.00 0.00 40.02 1.85
3872 4166 8.100791 ACAACATAACAACTATGAGAAGCCTTA 58.899 33.333 0.00 0.00 40.02 2.69
3873 4167 6.942576 ACAACATAACAACTATGAGAAGCCTT 59.057 34.615 0.00 0.00 40.02 4.35
3874 4168 6.372659 CACAACATAACAACTATGAGAAGCCT 59.627 38.462 0.00 0.00 40.02 4.58
3875 4169 6.149474 ACACAACATAACAACTATGAGAAGCC 59.851 38.462 0.00 0.00 40.02 4.35
3880 4174 7.361201 CCAGGAACACAACATAACAACTATGAG 60.361 40.741 0.00 0.00 40.02 2.90
3952 4258 7.093596 GGGAATGGATGAATTTCTTGAGAACTT 60.094 37.037 0.00 0.00 33.13 2.66
3957 4263 6.154021 ACAAGGGAATGGATGAATTTCTTGAG 59.846 38.462 14.83 0.00 36.14 3.02
3991 4298 5.885912 GGGAAATAAAAGCTCACATGACCTA 59.114 40.000 0.00 0.00 0.00 3.08
4121 4428 8.529911 GCGTTTGAACTATTACAGAGTATACAC 58.470 37.037 5.50 0.00 0.00 2.90
4137 4444 5.586243 AGCATAACATATGAGCGTTTGAACT 59.414 36.000 10.38 0.00 0.00 3.01
4145 4452 4.802999 TCAGAGAGCATAACATATGAGCG 58.197 43.478 10.38 0.00 0.00 5.03
4164 4471 5.334414 GCACATGGAAGTAGAACAAACTCAG 60.334 44.000 0.00 0.00 0.00 3.35
4172 4479 4.154918 CCAGAAAGCACATGGAAGTAGAAC 59.845 45.833 0.00 0.00 36.09 3.01
4204 4511 7.362056 GGAAGCAGCTTTATTACAGACATCAAA 60.362 37.037 9.62 0.00 0.00 2.69
4205 4512 6.094048 GGAAGCAGCTTTATTACAGACATCAA 59.906 38.462 9.62 0.00 0.00 2.57
4206 4513 5.586243 GGAAGCAGCTTTATTACAGACATCA 59.414 40.000 9.62 0.00 0.00 3.07
4246 4553 5.629079 AAGTTCCTTTTATTCCGAAGCAG 57.371 39.130 0.00 0.00 0.00 4.24
4252 4559 9.503427 CTTTAGCAATAAGTTCCTTTTATTCCG 57.497 33.333 0.00 0.00 30.41 4.30
4270 4577 7.680730 AGTCTCAATTAGGACTTCTTTAGCAA 58.319 34.615 6.65 0.00 39.44 3.91
4271 4578 7.246171 AGTCTCAATTAGGACTTCTTTAGCA 57.754 36.000 6.65 0.00 39.44 3.49
4281 4588 7.329717 CCGATGCTTATTAGTCTCAATTAGGAC 59.670 40.741 2.80 2.80 0.00 3.85
4391 5095 8.131100 GTGCAACAATATTCAGTGTGCTATTAT 58.869 33.333 0.00 0.00 32.26 1.28
4459 5181 2.527497 TCCAATGAAAGGCATGAGCAA 58.473 42.857 0.00 0.00 44.61 3.91
4466 5188 7.342541 TGAATAATCTGATTCCAATGAAAGGCA 59.657 33.333 6.10 0.00 35.34 4.75
4538 5260 1.896220 AAATCGAGCAAGCCACTTGA 58.104 45.000 11.38 0.00 43.42 3.02
4553 5275 8.718734 AGGTACACTTCTATGAAAACGAAAATC 58.281 33.333 0.00 0.00 0.00 2.17
4559 5281 7.762615 TCCATTAGGTACACTTCTATGAAAACG 59.237 37.037 0.00 0.00 35.89 3.60
4690 5413 4.431416 TTCATGTCCACAGTACACCTTT 57.569 40.909 0.00 0.00 0.00 3.11
4746 5469 2.557924 CAGGCTGGTGTAAGAAATTGCA 59.442 45.455 6.61 0.00 0.00 4.08
4765 5488 8.680903 AGAGGTGCATTCAGAATTAAATAACAG 58.319 33.333 0.00 0.00 0.00 3.16
4785 5508 5.641209 CCTTGAATTACTCTGTGAAGAGGTG 59.359 44.000 7.60 0.00 40.08 4.00
4926 5649 8.783093 CCAAACTGATGTGTATTGAAAGTTAGA 58.217 33.333 0.00 0.00 0.00 2.10
4952 5675 6.602179 GGAAATAAAAGAAACAGCAAATGCC 58.398 36.000 0.94 0.00 43.38 4.40
4962 5685 9.062674 GCAGAAGAATACGGAAATAAAAGAAAC 57.937 33.333 0.00 0.00 0.00 2.78
4969 5692 5.428253 AGCAGCAGAAGAATACGGAAATAA 58.572 37.500 0.00 0.00 0.00 1.40
4972 5695 3.334583 AGCAGCAGAAGAATACGGAAA 57.665 42.857 0.00 0.00 0.00 3.13
5025 5748 0.108615 CGAAAGTGTCGCCATCTCCT 60.109 55.000 0.00 0.00 44.14 3.69
5026 5749 2.373938 CGAAAGTGTCGCCATCTCC 58.626 57.895 0.00 0.00 44.14 3.71
5039 5762 7.312154 TCCATGTTTATTCAATTCACCGAAAG 58.688 34.615 0.00 0.00 0.00 2.62
5040 5763 7.220741 TCCATGTTTATTCAATTCACCGAAA 57.779 32.000 0.00 0.00 0.00 3.46
5043 5766 9.748708 AAATATCCATGTTTATTCAATTCACCG 57.251 29.630 0.00 0.00 0.00 4.94
5065 5788 6.122277 CCAACAGAGAATTGCTCCCTAAATA 58.878 40.000 0.00 0.00 45.10 1.40
5103 5827 0.674581 TGGAAGCAAGGACAGATGCG 60.675 55.000 0.00 0.00 46.98 4.73
5125 5849 1.541588 GCATGACTGTTCCCAACTTCC 59.458 52.381 0.00 0.00 0.00 3.46
5150 5874 0.108138 CCGAGAGCCCAACAGGTTAG 60.108 60.000 0.00 0.00 38.26 2.34
5157 5881 0.250513 AAGACATCCGAGAGCCCAAC 59.749 55.000 0.00 0.00 0.00 3.77
5162 5886 1.005340 CAAGCAAGACATCCGAGAGC 58.995 55.000 0.00 0.00 0.00 4.09
5164 5888 0.250234 CCCAAGCAAGACATCCGAGA 59.750 55.000 0.00 0.00 0.00 4.04
5168 5892 1.673168 CTAGCCCAAGCAAGACATCC 58.327 55.000 0.00 0.00 43.56 3.51
5196 5920 1.270550 CAGACACCAAAACATCCCAGC 59.729 52.381 0.00 0.00 0.00 4.85
5204 5928 6.096695 TGTTCTTTAAAGCAGACACCAAAAC 58.903 36.000 10.51 6.30 0.00 2.43
5264 5989 8.769891 ACGTCAACAAAAAGAAAAGAACAATTT 58.230 25.926 0.00 0.00 0.00 1.82
5281 6007 6.245115 TCGTATTCTCTTAGACGTCAACAA 57.755 37.500 19.50 7.66 36.69 2.83
5292 6018 8.082852 GCCTTGTATTCAGATCGTATTCTCTTA 58.917 37.037 0.00 0.00 0.00 2.10
5389 6115 8.100164 TCTGAAACTGTGATTTATACCACATCA 58.900 33.333 0.00 0.00 41.75 3.07
5426 6154 3.770933 ACCCATTCCTGGAATCAATTGTG 59.229 43.478 18.87 7.85 46.37 3.33
5433 6161 3.831911 TGAACAAACCCATTCCTGGAATC 59.168 43.478 18.87 6.46 46.37 2.52
5465 6193 8.526681 CATGAAGCGCAGAAATTTTATAAAGTC 58.473 33.333 11.47 0.00 0.00 3.01
5471 6199 6.624423 AGAACATGAAGCGCAGAAATTTTAT 58.376 32.000 11.47 0.00 0.00 1.40
5668 6396 4.006989 TGGTTGGGTCATCGTTTTATGAG 58.993 43.478 0.00 0.00 36.57 2.90
5704 6432 3.072622 GGGGTTCTTTGTCCACTCTACTT 59.927 47.826 0.00 0.00 0.00 2.24
5707 6435 1.621814 CGGGGTTCTTTGTCCACTCTA 59.378 52.381 0.00 0.00 0.00 2.43
5708 6436 0.396811 CGGGGTTCTTTGTCCACTCT 59.603 55.000 0.00 0.00 0.00 3.24
5709 6437 1.235281 GCGGGGTTCTTTGTCCACTC 61.235 60.000 0.00 0.00 0.00 3.51
5726 6454 0.588252 CCTTCTGTTGTGGTCTTGCG 59.412 55.000 0.00 0.00 0.00 4.85
6119 6851 3.921021 GTGTGACGTCAAATCCTAGTCTG 59.079 47.826 21.95 0.00 33.40 3.51
6175 6907 7.147863 CCTTATGATTTGTCATCCATCACCAAA 60.148 37.037 0.00 0.00 29.74 3.28
6187 6919 6.295249 TCACACTTGTCCTTATGATTTGTCA 58.705 36.000 0.00 0.00 0.00 3.58
6212 6944 4.949856 ACAAGCTTCAAAAGGAAAGACTCA 59.050 37.500 0.00 0.00 34.44 3.41
6221 6953 1.065401 TGACGCACAAGCTTCAAAAGG 59.935 47.619 0.00 0.00 44.79 3.11
6238 6970 3.733337 ACGGATAGCCATTCAGATTGAC 58.267 45.455 0.00 0.00 0.00 3.18
6329 7061 5.949735 AGGCGTTTTCACCTTTTGTATATG 58.050 37.500 0.00 0.00 29.74 1.78
6330 7062 6.584185 AAGGCGTTTTCACCTTTTGTATAT 57.416 33.333 0.00 0.00 43.91 0.86
6332 7064 4.929819 AAGGCGTTTTCACCTTTTGTAT 57.070 36.364 0.00 0.00 43.91 2.29
6378 7110 6.427853 GGAAATGGGATTTTTGTTTCTTCTGG 59.572 38.462 0.00 0.00 31.47 3.86
6384 7116 4.455533 GCCTGGAAATGGGATTTTTGTTTC 59.544 41.667 0.00 0.00 31.47 2.78
6396 7128 2.954318 CTGAACATAGGCCTGGAAATGG 59.046 50.000 17.99 0.00 0.00 3.16
6434 7166 1.648504 GACGGGGAAGTAAATCGGTG 58.351 55.000 0.00 0.00 0.00 4.94
6469 7201 1.055849 TTGCTCCAGGTAGAACAGCA 58.944 50.000 0.00 0.00 38.32 4.41
6497 7229 7.655490 CAAAGGGATGAGTGATTTATGGAATC 58.345 38.462 0.00 0.00 43.67 2.52
6518 7250 5.888412 AAATGCTCTAAAAACGTGCAAAG 57.112 34.783 0.00 0.00 37.20 2.77
6530 7262 1.745827 GCCCGGCTGTAAATGCTCTAA 60.746 52.381 0.71 0.00 0.00 2.10
6590 7322 1.302271 GGAAGGACGGTTGGGTCAC 60.302 63.158 0.00 0.00 38.70 3.67
6591 7323 2.522367 GGGAAGGACGGTTGGGTCA 61.522 63.158 0.00 0.00 38.70 4.02
6606 7338 0.688487 CTTACGGGGTCAGTTTGGGA 59.312 55.000 0.00 0.00 0.00 4.37
6630 7362 2.973694 TATAAGAGGTGCCGTGAACC 57.026 50.000 0.00 0.00 38.03 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.