Multiple sequence alignment - TraesCS5D01G308900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G308900 chr5D 100.000 3329 0 0 1 3329 406197174 406200502 0.000000e+00 6148.0
1 TraesCS5D01G308900 chr5D 88.737 586 64 2 1 584 216877850 216877265 0.000000e+00 715.0
2 TraesCS5D01G308900 chr5D 88.699 584 63 3 1 582 535174179 535173597 0.000000e+00 710.0
3 TraesCS5D01G308900 chr5D 88.014 584 67 3 1 581 216863355 216862772 0.000000e+00 688.0
4 TraesCS5D01G308900 chr5D 87.479 583 71 2 1 581 306500768 306501350 0.000000e+00 671.0
5 TraesCS5D01G308900 chr5D 76.452 1274 243 49 1074 2320 350676004 350677247 3.620000e-179 638.0
6 TraesCS5D01G308900 chr5D 90.411 219 20 1 2404 2621 412736820 412737038 1.510000e-73 287.0
7 TraesCS5D01G308900 chr5B 93.798 1709 73 20 716 2405 486895782 486897476 0.000000e+00 2538.0
8 TraesCS5D01G308900 chr5B 76.138 1274 247 48 1074 2320 411621649 411622892 1.700000e-172 616.0
9 TraesCS5D01G308900 chr5B 82.703 185 19 6 2620 2800 486897475 486897650 5.750000e-33 152.0
10 TraesCS5D01G308900 chr5B 94.000 50 3 0 663 712 486895701 486895750 3.560000e-10 76.8
11 TraesCS5D01G308900 chr1D 89.212 584 59 4 1 581 252790786 252790204 0.000000e+00 726.0
12 TraesCS5D01G308900 chr1D 90.000 220 20 2 2404 2622 46331035 46330817 1.960000e-72 283.0
13 TraesCS5D01G308900 chr7D 89.060 585 59 5 1 583 460542880 460542299 0.000000e+00 721.0
14 TraesCS5D01G308900 chr7D 83.333 102 13 4 1264 1363 121931739 121931838 1.270000e-14 91.6
15 TraesCS5D01G308900 chr7D 93.617 47 3 0 2232 2278 615943382 615943428 1.660000e-08 71.3
16 TraesCS5D01G308900 chr7D 87.234 47 6 0 2232 2278 616008294 616008248 2.000000e-03 54.7
17 TraesCS5D01G308900 chr2D 89.022 583 62 2 1 581 475180193 475179611 0.000000e+00 721.0
18 TraesCS5D01G308900 chr2D 90.308 227 21 1 2396 2621 197540959 197540733 2.510000e-76 296.0
19 TraesCS5D01G308900 chr6D 90.280 535 41 8 2801 3329 405666357 405665828 0.000000e+00 689.0
20 TraesCS5D01G308900 chr3D 88.055 586 65 4 1 584 497336377 497335795 0.000000e+00 689.0
21 TraesCS5D01G308900 chr3D 87.406 532 38 12 2804 3329 18814605 18814097 4.790000e-163 584.0
22 TraesCS5D01G308900 chr3D 89.177 231 22 3 2397 2624 108291070 108290840 5.440000e-73 285.0
23 TraesCS5D01G308900 chr4D 87.669 592 69 4 1 589 452767733 452767143 0.000000e+00 686.0
24 TraesCS5D01G308900 chr5A 76.545 1262 239 49 1086 2320 451138186 451139417 3.620000e-179 638.0
25 TraesCS5D01G308900 chr1B 90.411 219 19 2 2404 2621 640451240 640451457 1.510000e-73 287.0
26 TraesCS5D01G308900 chr1B 94.737 76 4 0 3254 3329 38122051 38121976 5.830000e-23 119.0
27 TraesCS5D01G308900 chr7B 89.083 229 23 2 2400 2627 102629451 102629224 1.960000e-72 283.0
28 TraesCS5D01G308900 chr7B 88.412 233 21 5 2396 2625 732427957 732428186 3.270000e-70 276.0
29 TraesCS5D01G308900 chr7B 83.333 102 13 4 1264 1363 83024498 83024597 1.270000e-14 91.6
30 TraesCS5D01G308900 chr7B 94.118 51 3 0 2232 2282 709094008 709093958 9.900000e-11 78.7
31 TraesCS5D01G308900 chr7B 93.617 47 3 0 2232 2278 709049311 709049357 1.660000e-08 71.3
32 TraesCS5D01G308900 chrUn 89.954 219 20 2 2404 2621 322259829 322260046 7.030000e-72 281.0
33 TraesCS5D01G308900 chrUn 93.151 73 4 1 3258 3329 283450 283522 4.540000e-19 106.0
34 TraesCS5D01G308900 chr7A 88.034 234 26 2 2397 2629 429734711 429734479 3.270000e-70 276.0
35 TraesCS5D01G308900 chr7A 83.333 102 13 4 1264 1363 125479293 125479392 1.270000e-14 91.6
36 TraesCS5D01G308900 chr7A 94.118 51 3 0 2232 2282 708709583 708709633 9.900000e-11 78.7
37 TraesCS5D01G308900 chr7A 93.617 47 3 0 2232 2278 708783659 708783613 1.660000e-08 71.3
38 TraesCS5D01G308900 chr7A 87.097 62 5 3 1322 1383 19547316 19547258 2.140000e-07 67.6
39 TraesCS5D01G308900 chr4B 100.000 33 0 0 1322 1354 625380994 625381026 9.970000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G308900 chr5D 406197174 406200502 3328 False 6148.000000 6148 100.000 1 3329 1 chr5D.!!$F3 3328
1 TraesCS5D01G308900 chr5D 216877265 216877850 585 True 715.000000 715 88.737 1 584 1 chr5D.!!$R2 583
2 TraesCS5D01G308900 chr5D 535173597 535174179 582 True 710.000000 710 88.699 1 582 1 chr5D.!!$R3 581
3 TraesCS5D01G308900 chr5D 216862772 216863355 583 True 688.000000 688 88.014 1 581 1 chr5D.!!$R1 580
4 TraesCS5D01G308900 chr5D 306500768 306501350 582 False 671.000000 671 87.479 1 581 1 chr5D.!!$F1 580
5 TraesCS5D01G308900 chr5D 350676004 350677247 1243 False 638.000000 638 76.452 1074 2320 1 chr5D.!!$F2 1246
6 TraesCS5D01G308900 chr5B 486895701 486897650 1949 False 922.266667 2538 90.167 663 2800 3 chr5B.!!$F2 2137
7 TraesCS5D01G308900 chr5B 411621649 411622892 1243 False 616.000000 616 76.138 1074 2320 1 chr5B.!!$F1 1246
8 TraesCS5D01G308900 chr1D 252790204 252790786 582 True 726.000000 726 89.212 1 581 1 chr1D.!!$R2 580
9 TraesCS5D01G308900 chr7D 460542299 460542880 581 True 721.000000 721 89.060 1 583 1 chr7D.!!$R1 582
10 TraesCS5D01G308900 chr2D 475179611 475180193 582 True 721.000000 721 89.022 1 581 1 chr2D.!!$R2 580
11 TraesCS5D01G308900 chr6D 405665828 405666357 529 True 689.000000 689 90.280 2801 3329 1 chr6D.!!$R1 528
12 TraesCS5D01G308900 chr3D 497335795 497336377 582 True 689.000000 689 88.055 1 584 1 chr3D.!!$R3 583
13 TraesCS5D01G308900 chr3D 18814097 18814605 508 True 584.000000 584 87.406 2804 3329 1 chr3D.!!$R1 525
14 TraesCS5D01G308900 chr4D 452767143 452767733 590 True 686.000000 686 87.669 1 589 1 chr4D.!!$R1 588
15 TraesCS5D01G308900 chr5A 451138186 451139417 1231 False 638.000000 638 76.545 1086 2320 1 chr5A.!!$F1 1234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 668 0.034337 TACCACTGGACGCAACCTTC 59.966 55.0 0.71 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 2668 0.035439 CATGTTTGCTACCCCTCCGT 60.035 55.0 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.000827 TGGTTAATGGCGCACAAACTG 60.001 47.619 10.83 0.00 0.00 3.16
52 54 0.417841 AACTGCTAGGAAGGGGAGGA 59.582 55.000 0.00 0.00 0.00 3.71
75 77 2.203788 TTCTGGGTGCCGACCTCT 60.204 61.111 0.00 0.00 42.66 3.69
184 187 2.686106 GGGGCGTGGTCCCTTCTA 60.686 66.667 0.00 0.00 45.53 2.10
290 294 2.762459 CCCGGGATTCGAGGGTGA 60.762 66.667 18.48 0.00 42.43 4.02
386 390 2.632602 CTAGGAGCCGGCCTCTCTGA 62.633 65.000 26.15 5.12 40.57 3.27
410 414 1.152715 GTCTACTAGGAGGCGGCCT 60.153 63.158 24.13 24.13 42.15 5.19
468 472 3.849951 CCGGCCGCTCATACCAGT 61.850 66.667 22.85 0.00 0.00 4.00
499 503 2.555547 GGCGGCAGTCAAGCTTTGT 61.556 57.895 3.07 0.00 34.17 2.83
537 541 2.761767 TCGGTCCCGATGTCTTGAAATA 59.238 45.455 3.90 0.00 44.01 1.40
546 551 4.685848 CGATGTCTTGAAATACCATGGGGA 60.686 45.833 18.09 3.51 38.05 4.81
565 570 2.432146 GGACAGATGAGGCTACACATGA 59.568 50.000 0.00 0.00 0.00 3.07
584 589 6.641314 CACATGACCTATAACTCCGACAATAC 59.359 42.308 0.00 0.00 0.00 1.89
587 592 4.812653 ACCTATAACTCCGACAATACCCT 58.187 43.478 0.00 0.00 0.00 4.34
588 593 5.957132 ACCTATAACTCCGACAATACCCTA 58.043 41.667 0.00 0.00 0.00 3.53
589 594 6.559429 ACCTATAACTCCGACAATACCCTAT 58.441 40.000 0.00 0.00 0.00 2.57
590 595 7.015064 ACCTATAACTCCGACAATACCCTATT 58.985 38.462 0.00 0.00 0.00 1.73
591 596 8.172741 ACCTATAACTCCGACAATACCCTATTA 58.827 37.037 0.00 0.00 0.00 0.98
592 597 9.028284 CCTATAACTCCGACAATACCCTATTAA 57.972 37.037 0.00 0.00 0.00 1.40
613 618 3.722728 AAAAAGTGTCGGAGTACTCGT 57.277 42.857 16.56 0.00 0.00 4.18
614 619 2.985406 AAAGTGTCGGAGTACTCGTC 57.015 50.000 16.56 9.65 0.00 4.20
615 620 2.181954 AAGTGTCGGAGTACTCGTCT 57.818 50.000 16.56 7.30 0.00 4.18
616 621 2.181954 AGTGTCGGAGTACTCGTCTT 57.818 50.000 16.56 0.00 0.00 3.01
617 622 3.325293 AGTGTCGGAGTACTCGTCTTA 57.675 47.619 16.56 0.00 0.00 2.10
618 623 3.668447 AGTGTCGGAGTACTCGTCTTAA 58.332 45.455 16.56 0.00 0.00 1.85
619 624 3.434984 AGTGTCGGAGTACTCGTCTTAAC 59.565 47.826 16.56 9.70 0.00 2.01
620 625 3.434984 GTGTCGGAGTACTCGTCTTAACT 59.565 47.826 16.56 0.00 0.00 2.24
621 626 4.067896 TGTCGGAGTACTCGTCTTAACTT 58.932 43.478 16.56 0.00 0.00 2.66
622 627 4.516698 TGTCGGAGTACTCGTCTTAACTTT 59.483 41.667 16.56 0.00 0.00 2.66
623 628 4.850470 GTCGGAGTACTCGTCTTAACTTTG 59.150 45.833 16.56 0.00 0.00 2.77
624 629 4.756642 TCGGAGTACTCGTCTTAACTTTGA 59.243 41.667 16.56 0.00 0.00 2.69
625 630 5.239306 TCGGAGTACTCGTCTTAACTTTGAA 59.761 40.000 16.56 0.00 0.00 2.69
626 631 5.341727 CGGAGTACTCGTCTTAACTTTGAAC 59.658 44.000 16.56 0.00 0.00 3.18
627 632 6.445475 GGAGTACTCGTCTTAACTTTGAACT 58.555 40.000 16.56 0.00 0.00 3.01
628 633 6.922407 GGAGTACTCGTCTTAACTTTGAACTT 59.078 38.462 16.56 0.00 0.00 2.66
629 634 7.114670 GGAGTACTCGTCTTAACTTTGAACTTC 59.885 40.741 16.56 0.00 0.00 3.01
630 635 7.714703 AGTACTCGTCTTAACTTTGAACTTCT 58.285 34.615 0.00 0.00 0.00 2.85
631 636 8.844244 AGTACTCGTCTTAACTTTGAACTTCTA 58.156 33.333 0.00 0.00 0.00 2.10
632 637 9.623350 GTACTCGTCTTAACTTTGAACTTCTAT 57.377 33.333 0.00 0.00 0.00 1.98
634 639 9.194271 ACTCGTCTTAACTTTGAACTTCTATTC 57.806 33.333 0.00 0.00 0.00 1.75
635 640 9.193133 CTCGTCTTAACTTTGAACTTCTATTCA 57.807 33.333 0.00 0.00 36.80 2.57
636 641 9.537192 TCGTCTTAACTTTGAACTTCTATTCAA 57.463 29.630 0.00 0.00 44.80 2.69
652 657 9.712305 CTTCTATTCAATATAAGGTACCACTGG 57.288 37.037 15.94 0.00 0.00 4.00
653 658 9.442062 TTCTATTCAATATAAGGTACCACTGGA 57.558 33.333 15.94 0.00 0.00 3.86
654 659 8.867097 TCTATTCAATATAAGGTACCACTGGAC 58.133 37.037 15.94 0.00 0.00 4.02
655 660 5.524971 TCAATATAAGGTACCACTGGACG 57.475 43.478 15.94 0.00 0.00 4.79
656 661 4.056050 CAATATAAGGTACCACTGGACGC 58.944 47.826 15.94 0.00 0.00 5.19
657 662 1.563924 ATAAGGTACCACTGGACGCA 58.436 50.000 15.94 0.00 0.00 5.24
658 663 1.340088 TAAGGTACCACTGGACGCAA 58.660 50.000 15.94 0.00 0.00 4.85
659 664 0.250166 AAGGTACCACTGGACGCAAC 60.250 55.000 15.94 0.00 0.00 4.17
660 665 1.670083 GGTACCACTGGACGCAACC 60.670 63.158 7.15 0.00 0.00 3.77
661 666 1.370064 GTACCACTGGACGCAACCT 59.630 57.895 0.71 0.00 0.00 3.50
662 667 0.250166 GTACCACTGGACGCAACCTT 60.250 55.000 0.71 0.00 0.00 3.50
663 668 0.034337 TACCACTGGACGCAACCTTC 59.966 55.000 0.71 0.00 0.00 3.46
664 669 1.227823 CCACTGGACGCAACCTTCA 60.228 57.895 0.00 0.00 0.00 3.02
665 670 0.817634 CCACTGGACGCAACCTTCAA 60.818 55.000 0.00 0.00 0.00 2.69
666 671 1.238439 CACTGGACGCAACCTTCAAT 58.762 50.000 0.00 0.00 0.00 2.57
698 703 2.842394 AATCACTGGAGCCTGCGTCG 62.842 60.000 0.00 0.00 0.00 5.12
701 706 2.279120 CTGGAGCCTGCGTCGATC 60.279 66.667 0.00 0.00 0.00 3.69
746 779 4.346129 GCTGGAGCATCAAGAAAAATACG 58.654 43.478 0.00 0.00 38.98 3.06
765 798 0.249398 GCTGGTACTCCGAACACCAT 59.751 55.000 2.06 0.00 41.38 3.55
782 815 1.002274 ATGGTCGCCCTCTTCTCCT 59.998 57.895 0.00 0.00 0.00 3.69
786 819 4.214327 CGCCCTCTTCTCCTCGGC 62.214 72.222 0.00 0.00 36.21 5.54
789 822 1.990060 CCCTCTTCTCCTCGGCCAA 60.990 63.158 2.24 0.00 0.00 4.52
790 823 1.553690 CCCTCTTCTCCTCGGCCAAA 61.554 60.000 2.24 0.00 0.00 3.28
791 824 0.324943 CCTCTTCTCCTCGGCCAAAA 59.675 55.000 2.24 0.00 0.00 2.44
792 825 1.065126 CCTCTTCTCCTCGGCCAAAAT 60.065 52.381 2.24 0.00 0.00 1.82
793 826 2.284190 CTCTTCTCCTCGGCCAAAATC 58.716 52.381 2.24 0.00 0.00 2.17
794 827 1.065418 TCTTCTCCTCGGCCAAAATCC 60.065 52.381 2.24 0.00 0.00 3.01
795 828 0.695924 TTCTCCTCGGCCAAAATCCA 59.304 50.000 2.24 0.00 0.00 3.41
796 829 0.918983 TCTCCTCGGCCAAAATCCAT 59.081 50.000 2.24 0.00 0.00 3.41
797 830 2.123589 TCTCCTCGGCCAAAATCCATA 58.876 47.619 2.24 0.00 0.00 2.74
798 831 2.711009 TCTCCTCGGCCAAAATCCATAT 59.289 45.455 2.24 0.00 0.00 1.78
799 832 3.907474 TCTCCTCGGCCAAAATCCATATA 59.093 43.478 2.24 0.00 0.00 0.86
800 833 4.349636 TCTCCTCGGCCAAAATCCATATAA 59.650 41.667 2.24 0.00 0.00 0.98
801 834 5.014123 TCTCCTCGGCCAAAATCCATATAAT 59.986 40.000 2.24 0.00 0.00 1.28
816 849 5.000591 CCATATAATGTACATCGTGCCCAA 58.999 41.667 9.23 0.00 0.00 4.12
844 878 3.974871 TTTTTACGAACCAGCCAAGAC 57.025 42.857 0.00 0.00 0.00 3.01
848 882 0.670546 ACGAACCAGCCAAGACGATG 60.671 55.000 0.00 0.00 0.00 3.84
849 883 0.389817 CGAACCAGCCAAGACGATGA 60.390 55.000 0.00 0.00 0.00 2.92
850 884 1.740380 CGAACCAGCCAAGACGATGAT 60.740 52.381 0.00 0.00 0.00 2.45
851 885 1.667724 GAACCAGCCAAGACGATGATG 59.332 52.381 0.00 0.00 0.00 3.07
852 886 0.745845 ACCAGCCAAGACGATGATGC 60.746 55.000 0.00 0.00 0.00 3.91
853 887 1.442526 CCAGCCAAGACGATGATGCC 61.443 60.000 0.00 0.00 0.00 4.40
854 888 0.463295 CAGCCAAGACGATGATGCCT 60.463 55.000 0.00 0.00 0.00 4.75
855 889 0.179062 AGCCAAGACGATGATGCCTC 60.179 55.000 0.00 0.00 0.00 4.70
856 890 1.493950 GCCAAGACGATGATGCCTCG 61.494 60.000 0.00 0.00 41.77 4.63
857 891 0.103026 CCAAGACGATGATGCCTCGA 59.897 55.000 0.00 0.00 39.38 4.04
903 937 0.804364 ACACGCAACATGCATCGATT 59.196 45.000 11.94 0.00 45.36 3.34
904 938 1.185189 CACGCAACATGCATCGATTG 58.815 50.000 11.94 10.62 45.36 2.67
907 948 2.871633 ACGCAACATGCATCGATTGATA 59.128 40.909 15.70 0.00 45.36 2.15
914 955 6.359480 ACATGCATCGATTGATATATGCTG 57.641 37.500 14.27 9.58 43.98 4.41
944 985 2.017783 CACACGCAACATGCAAGCC 61.018 57.895 2.99 0.00 45.36 4.35
946 987 3.286751 ACGCAACATGCAAGCCGT 61.287 55.556 2.99 0.00 45.36 5.68
952 998 3.059257 CGCAACATGCAAGCCGTATATAA 60.059 43.478 2.99 0.00 45.36 0.98
963 1009 4.369182 AGCCGTATATAAATAGGATGCGC 58.631 43.478 0.00 0.00 0.00 6.09
966 1012 3.734231 CGTATATAAATAGGATGCGCCCG 59.266 47.826 4.18 0.00 37.37 6.13
967 1013 2.684001 TATAAATAGGATGCGCCCGG 57.316 50.000 4.18 0.00 37.37 5.73
969 1015 1.764571 TAAATAGGATGCGCCCGGCT 61.765 55.000 4.18 0.00 44.05 5.52
970 1016 3.537206 AATAGGATGCGCCCGGCTC 62.537 63.158 4.18 0.00 44.05 4.70
991 1039 1.016130 CACAGTCTACGGCAAGCAGG 61.016 60.000 0.00 0.00 0.00 4.85
995 1043 2.265739 CTACGGCAAGCAGGAGCA 59.734 61.111 0.00 0.00 45.49 4.26
1254 1302 2.765807 CGGATCCTGGTGAGGGCT 60.766 66.667 10.75 0.00 40.25 5.19
1794 1842 1.523711 CGACAGCACCAACACCAGT 60.524 57.895 0.00 0.00 0.00 4.00
1854 1902 2.588877 GCGCTGCCGTCCATGTAT 60.589 61.111 0.00 0.00 36.67 2.29
1890 1938 3.402681 ATCAGCCTGGGGGACACG 61.403 66.667 0.00 0.00 33.58 4.49
2351 2405 5.183331 AGCTCGCTCGGTTTAATATAGATCA 59.817 40.000 0.00 0.00 0.00 2.92
2379 2433 8.641155 CAAATGTACGTTCAGTATTTCGAGTTA 58.359 33.333 0.00 0.00 37.69 2.24
2388 2442 7.667043 TCAGTATTTCGAGTTAGCAAACATT 57.333 32.000 0.00 0.00 38.12 2.71
2417 2475 8.673456 ATTAATAAGATTACTCCCCCTCTCTC 57.327 38.462 0.00 0.00 0.00 3.20
2418 2476 5.688220 ATAAGATTACTCCCCCTCTCTCA 57.312 43.478 0.00 0.00 0.00 3.27
2419 2477 3.611025 AGATTACTCCCCCTCTCTCAG 57.389 52.381 0.00 0.00 0.00 3.35
2420 2478 2.862597 AGATTACTCCCCCTCTCTCAGT 59.137 50.000 0.00 0.00 0.00 3.41
2421 2479 3.273618 AGATTACTCCCCCTCTCTCAGTT 59.726 47.826 0.00 0.00 0.00 3.16
2422 2480 3.562108 TTACTCCCCCTCTCTCAGTTT 57.438 47.619 0.00 0.00 0.00 2.66
2423 2481 4.687262 TTACTCCCCCTCTCTCAGTTTA 57.313 45.455 0.00 0.00 0.00 2.01
2424 2482 2.822697 ACTCCCCCTCTCTCAGTTTAC 58.177 52.381 0.00 0.00 0.00 2.01
2425 2483 2.111972 ACTCCCCCTCTCTCAGTTTACA 59.888 50.000 0.00 0.00 0.00 2.41
2426 2484 3.173965 CTCCCCCTCTCTCAGTTTACAA 58.826 50.000 0.00 0.00 0.00 2.41
2427 2485 3.173965 TCCCCCTCTCTCAGTTTACAAG 58.826 50.000 0.00 0.00 0.00 3.16
2428 2486 2.237392 CCCCCTCTCTCAGTTTACAAGG 59.763 54.545 0.00 0.00 0.00 3.61
2429 2487 2.355209 CCCCTCTCTCAGTTTACAAGGC 60.355 54.545 0.00 0.00 0.00 4.35
2430 2488 2.611518 CCTCTCTCAGTTTACAAGGCG 58.388 52.381 0.00 0.00 0.00 5.52
2431 2489 2.028930 CCTCTCTCAGTTTACAAGGCGT 60.029 50.000 0.00 0.00 0.00 5.68
2432 2490 2.989840 CTCTCTCAGTTTACAAGGCGTG 59.010 50.000 0.00 0.00 0.00 5.34
2433 2491 1.461127 CTCTCAGTTTACAAGGCGTGC 59.539 52.381 0.00 0.00 0.00 5.34
2434 2492 0.163788 CTCAGTTTACAAGGCGTGCG 59.836 55.000 0.00 0.00 0.00 5.34
2435 2493 0.531090 TCAGTTTACAAGGCGTGCGT 60.531 50.000 0.00 0.00 0.00 5.24
2436 2494 1.141645 CAGTTTACAAGGCGTGCGTA 58.858 50.000 0.00 0.00 0.00 4.42
2437 2495 1.730064 CAGTTTACAAGGCGTGCGTAT 59.270 47.619 0.00 0.00 0.00 3.06
2438 2496 2.924926 CAGTTTACAAGGCGTGCGTATA 59.075 45.455 0.00 0.00 0.00 1.47
2439 2497 3.554324 CAGTTTACAAGGCGTGCGTATAT 59.446 43.478 0.00 0.00 0.00 0.86
2440 2498 3.800506 AGTTTACAAGGCGTGCGTATATC 59.199 43.478 0.00 0.00 0.00 1.63
2441 2499 2.427232 TACAAGGCGTGCGTATATCC 57.573 50.000 0.00 0.00 0.00 2.59
2442 2500 0.750850 ACAAGGCGTGCGTATATCCT 59.249 50.000 0.00 0.00 0.00 3.24
2443 2501 1.138266 ACAAGGCGTGCGTATATCCTT 59.862 47.619 0.00 0.00 37.61 3.36
2444 2502 2.363038 ACAAGGCGTGCGTATATCCTTA 59.637 45.455 0.00 0.00 35.55 2.69
2445 2503 2.987149 CAAGGCGTGCGTATATCCTTAG 59.013 50.000 4.24 0.00 35.55 2.18
2446 2504 1.544691 AGGCGTGCGTATATCCTTAGG 59.455 52.381 0.00 0.00 0.00 2.69
2447 2505 1.271656 GGCGTGCGTATATCCTTAGGT 59.728 52.381 0.00 0.00 0.00 3.08
2448 2506 2.593257 GCGTGCGTATATCCTTAGGTC 58.407 52.381 0.00 0.00 0.00 3.85
2449 2507 2.847901 CGTGCGTATATCCTTAGGTCG 58.152 52.381 0.00 0.00 0.00 4.79
2450 2508 2.225019 CGTGCGTATATCCTTAGGTCGT 59.775 50.000 0.00 0.00 0.00 4.34
2451 2509 3.666374 CGTGCGTATATCCTTAGGTCGTC 60.666 52.174 0.00 0.00 0.00 4.20
2452 2510 3.251729 GTGCGTATATCCTTAGGTCGTCA 59.748 47.826 0.00 0.00 0.00 4.35
2453 2511 3.884693 TGCGTATATCCTTAGGTCGTCAA 59.115 43.478 0.00 0.00 0.00 3.18
2454 2512 4.521639 TGCGTATATCCTTAGGTCGTCAAT 59.478 41.667 0.00 0.00 0.00 2.57
2455 2513 5.010314 TGCGTATATCCTTAGGTCGTCAATT 59.990 40.000 0.00 0.00 0.00 2.32
2456 2514 5.924825 GCGTATATCCTTAGGTCGTCAATTT 59.075 40.000 0.00 0.00 0.00 1.82
2457 2515 6.128902 GCGTATATCCTTAGGTCGTCAATTTG 60.129 42.308 0.00 0.00 0.00 2.32
2458 2516 7.143340 CGTATATCCTTAGGTCGTCAATTTGA 58.857 38.462 0.00 0.00 0.00 2.69
2459 2517 7.114529 CGTATATCCTTAGGTCGTCAATTTGAC 59.885 40.741 17.76 17.76 43.65 3.18
2468 2526 4.779987 GTCGTCAATTTGACCAACCTAAC 58.220 43.478 20.87 6.97 44.20 2.34
2469 2527 4.273969 GTCGTCAATTTGACCAACCTAACA 59.726 41.667 20.87 0.00 44.20 2.41
2470 2528 4.513692 TCGTCAATTTGACCAACCTAACAG 59.486 41.667 20.87 5.86 44.20 3.16
2471 2529 4.513692 CGTCAATTTGACCAACCTAACAGA 59.486 41.667 20.87 0.00 44.20 3.41
2472 2530 5.008217 CGTCAATTTGACCAACCTAACAGAA 59.992 40.000 20.87 0.00 44.20 3.02
2473 2531 6.438763 GTCAATTTGACCAACCTAACAGAAG 58.561 40.000 17.07 0.00 41.37 2.85
2474 2532 6.039382 GTCAATTTGACCAACCTAACAGAAGT 59.961 38.462 17.07 0.00 41.37 3.01
2475 2533 6.262273 TCAATTTGACCAACCTAACAGAAGTC 59.738 38.462 0.00 0.00 0.00 3.01
2476 2534 4.764050 TTGACCAACCTAACAGAAGTCA 57.236 40.909 0.00 0.00 0.00 3.41
2477 2535 4.974645 TGACCAACCTAACAGAAGTCAT 57.025 40.909 0.00 0.00 0.00 3.06
2478 2536 6.428083 TTGACCAACCTAACAGAAGTCATA 57.572 37.500 0.00 0.00 33.21 2.15
2479 2537 6.620877 TGACCAACCTAACAGAAGTCATAT 57.379 37.500 0.00 0.00 0.00 1.78
2480 2538 7.727578 TGACCAACCTAACAGAAGTCATATA 57.272 36.000 0.00 0.00 0.00 0.86
2481 2539 8.319057 TGACCAACCTAACAGAAGTCATATAT 57.681 34.615 0.00 0.00 0.00 0.86
2482 2540 8.768397 TGACCAACCTAACAGAAGTCATATATT 58.232 33.333 0.00 0.00 0.00 1.28
2529 2587 9.971922 AACTTCAGATGTTCTATTTTCAAAAGG 57.028 29.630 0.00 0.00 0.00 3.11
2530 2588 9.136323 ACTTCAGATGTTCTATTTTCAAAAGGT 57.864 29.630 0.00 0.00 0.00 3.50
2531 2589 9.403110 CTTCAGATGTTCTATTTTCAAAAGGTG 57.597 33.333 0.00 0.00 0.00 4.00
2532 2590 8.463930 TCAGATGTTCTATTTTCAAAAGGTGT 57.536 30.769 0.00 0.00 0.00 4.16
2533 2591 9.567776 TCAGATGTTCTATTTTCAAAAGGTGTA 57.432 29.630 0.00 0.00 0.00 2.90
2580 2638 7.436320 AATATGATGGTAAAATTGGCAACCT 57.564 32.000 0.00 0.00 32.99 3.50
2581 2639 8.546083 AATATGATGGTAAAATTGGCAACCTA 57.454 30.769 0.00 0.00 32.99 3.08
2582 2640 5.913137 TGATGGTAAAATTGGCAACCTAG 57.087 39.130 0.00 0.00 32.99 3.02
2583 2641 4.709397 TGATGGTAAAATTGGCAACCTAGG 59.291 41.667 7.41 7.41 32.99 3.02
2584 2642 4.120946 TGGTAAAATTGGCAACCTAGGT 57.879 40.909 9.21 9.21 32.99 3.08
2585 2643 5.258216 TGGTAAAATTGGCAACCTAGGTA 57.742 39.130 16.67 0.00 32.99 3.08
2586 2644 5.833340 TGGTAAAATTGGCAACCTAGGTAT 58.167 37.500 16.67 0.83 32.99 2.73
2587 2645 6.971340 TGGTAAAATTGGCAACCTAGGTATA 58.029 36.000 16.67 0.00 32.99 1.47
2588 2646 6.829811 TGGTAAAATTGGCAACCTAGGTATAC 59.170 38.462 16.67 8.74 32.99 1.47
2589 2647 6.017687 GGTAAAATTGGCAACCTAGGTATACG 60.018 42.308 16.67 5.52 0.00 3.06
2590 2648 4.765813 AATTGGCAACCTAGGTATACGT 57.234 40.909 16.67 3.23 0.00 3.57
2591 2649 3.530265 TTGGCAACCTAGGTATACGTG 57.470 47.619 16.67 10.64 0.00 4.49
2592 2650 2.459644 TGGCAACCTAGGTATACGTGT 58.540 47.619 16.67 0.00 0.00 4.49
2593 2651 3.630168 TGGCAACCTAGGTATACGTGTA 58.370 45.455 16.67 0.46 0.00 2.90
2594 2652 3.633525 TGGCAACCTAGGTATACGTGTAG 59.366 47.826 16.67 3.92 0.00 2.74
2595 2653 3.005155 GGCAACCTAGGTATACGTGTAGG 59.995 52.174 16.67 17.17 38.45 3.18
2596 2654 3.885297 GCAACCTAGGTATACGTGTAGGA 59.115 47.826 16.67 0.00 36.34 2.94
2597 2655 4.522022 GCAACCTAGGTATACGTGTAGGAT 59.478 45.833 16.67 13.21 36.34 3.24
2598 2656 5.010415 GCAACCTAGGTATACGTGTAGGATT 59.990 44.000 16.67 13.86 36.34 3.01
2599 2657 6.462067 GCAACCTAGGTATACGTGTAGGATTT 60.462 42.308 16.67 10.71 36.34 2.17
2600 2658 6.645790 ACCTAGGTATACGTGTAGGATTTG 57.354 41.667 14.41 5.16 36.34 2.32
2601 2659 6.131961 ACCTAGGTATACGTGTAGGATTTGT 58.868 40.000 14.41 5.66 36.34 2.83
2602 2660 7.290061 ACCTAGGTATACGTGTAGGATTTGTA 58.710 38.462 14.41 0.00 36.34 2.41
2603 2661 7.779798 ACCTAGGTATACGTGTAGGATTTGTAA 59.220 37.037 14.41 0.00 36.34 2.41
2604 2662 8.632679 CCTAGGTATACGTGTAGGATTTGTAAA 58.367 37.037 15.01 0.00 34.99 2.01
2605 2663 9.455847 CTAGGTATACGTGTAGGATTTGTAAAC 57.544 37.037 8.32 0.00 0.00 2.01
2606 2664 8.071177 AGGTATACGTGTAGGATTTGTAAACT 57.929 34.615 0.00 0.00 0.00 2.66
2607 2665 7.977853 AGGTATACGTGTAGGATTTGTAAACTG 59.022 37.037 0.00 0.00 0.00 3.16
2608 2666 7.975616 GGTATACGTGTAGGATTTGTAAACTGA 59.024 37.037 0.00 0.00 0.00 3.41
2609 2667 9.357652 GTATACGTGTAGGATTTGTAAACTGAA 57.642 33.333 0.00 0.00 0.00 3.02
2610 2668 8.836268 ATACGTGTAGGATTTGTAAACTGAAA 57.164 30.769 0.00 0.00 0.00 2.69
2611 2669 6.951643 ACGTGTAGGATTTGTAAACTGAAAC 58.048 36.000 0.00 0.00 0.00 2.78
2612 2670 6.068931 CGTGTAGGATTTGTAAACTGAAACG 58.931 40.000 0.00 0.00 0.00 3.60
2613 2671 6.368213 GTGTAGGATTTGTAAACTGAAACGG 58.632 40.000 0.00 0.00 0.00 4.44
2614 2672 6.203338 GTGTAGGATTTGTAAACTGAAACGGA 59.797 38.462 0.00 0.00 0.00 4.69
2615 2673 5.941948 AGGATTTGTAAACTGAAACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
2616 2674 4.760204 AGGATTTGTAAACTGAAACGGAGG 59.240 41.667 0.00 0.00 0.00 4.30
2617 2675 4.082949 GGATTTGTAAACTGAAACGGAGGG 60.083 45.833 0.00 0.00 0.00 4.30
2618 2676 2.554370 TGTAAACTGAAACGGAGGGG 57.446 50.000 0.00 0.00 0.00 4.79
2619 2677 1.770061 TGTAAACTGAAACGGAGGGGT 59.230 47.619 0.00 0.00 0.00 4.95
2620 2678 2.971330 TGTAAACTGAAACGGAGGGGTA 59.029 45.455 0.00 0.00 0.00 3.69
2632 2690 1.376609 GAGGGGTAGCAAACATGCCG 61.377 60.000 0.00 0.00 34.90 5.69
2633 2691 2.414785 GGGGTAGCAAACATGCCGG 61.415 63.158 0.00 0.00 34.90 6.13
2635 2693 0.393267 GGGTAGCAAACATGCCGGTA 60.393 55.000 1.90 0.00 34.90 4.02
2636 2694 0.730840 GGTAGCAAACATGCCGGTAC 59.269 55.000 1.90 9.35 34.90 3.34
2672 2730 6.670077 AAAATATCACTTCTTTCCGCTCTC 57.330 37.500 0.00 0.00 0.00 3.20
2674 2732 0.388649 TCACTTCTTTCCGCTCTCGC 60.389 55.000 0.00 0.00 0.00 5.03
2679 2737 0.385751 TCTTTCCGCTCTCGCCTATG 59.614 55.000 0.00 0.00 0.00 2.23
2680 2738 0.385751 CTTTCCGCTCTCGCCTATGA 59.614 55.000 0.00 0.00 0.00 2.15
2696 2754 0.960364 ATGATGGCCGTGGTGTTCAC 60.960 55.000 0.00 0.00 42.74 3.18
2697 2755 1.302511 GATGGCCGTGGTGTTCACT 60.303 57.895 0.00 0.00 43.94 3.41
2701 2759 0.889186 GGCCGTGGTGTTCACTTGAT 60.889 55.000 2.98 0.00 43.94 2.57
2702 2760 0.517316 GCCGTGGTGTTCACTTGATC 59.483 55.000 2.98 0.00 43.94 2.92
2703 2761 1.877637 CCGTGGTGTTCACTTGATCA 58.122 50.000 0.00 0.00 43.94 2.92
2704 2762 1.531149 CCGTGGTGTTCACTTGATCAC 59.469 52.381 10.70 10.70 43.94 3.06
2705 2763 2.209273 CGTGGTGTTCACTTGATCACA 58.791 47.619 17.91 2.05 43.16 3.58
2706 2764 2.611751 CGTGGTGTTCACTTGATCACAA 59.388 45.455 17.91 7.78 43.16 3.33
2707 2765 3.064682 CGTGGTGTTCACTTGATCACAAA 59.935 43.478 17.91 6.79 43.16 2.83
2708 2766 4.261155 CGTGGTGTTCACTTGATCACAAAT 60.261 41.667 17.91 0.00 43.16 2.32
2718 2776 5.692654 CACTTGATCACAAATTCACAATGCA 59.307 36.000 0.00 0.00 35.49 3.96
2722 2780 5.870433 TGATCACAAATTCACAATGCATTCC 59.130 36.000 9.53 0.00 0.00 3.01
2769 2829 2.668457 CGATGAGCTCAACAACTACACC 59.332 50.000 22.50 0.00 0.00 4.16
2770 2830 3.664107 GATGAGCTCAACAACTACACCA 58.336 45.455 22.50 0.00 0.00 4.17
2782 2844 3.111853 ACTACACCACACACATGTCTG 57.888 47.619 0.00 0.00 36.72 3.51
2786 2848 2.138320 CACCACACACATGTCTGAGTC 58.862 52.381 8.21 0.00 36.72 3.36
2812 2874 7.345943 GCACTAGCGTAAAAGGATTTAATCTC 58.654 38.462 4.87 0.00 37.28 2.75
2826 2888 8.459394 AGGATTTAATCTCCATCCCATAATTGT 58.541 33.333 4.87 0.00 37.77 2.71
2880 2942 8.622572 ATTATGGTTCAACTTATTCCCCATTT 57.377 30.769 0.00 0.00 33.50 2.32
2889 2951 9.983024 TCAACTTATTCCCCATTTGTATTTCTA 57.017 29.630 0.00 0.00 0.00 2.10
2961 3023 2.147958 AGTTTGCTTCCAACGCGAATA 58.852 42.857 15.93 0.00 33.67 1.75
2963 3025 3.190535 AGTTTGCTTCCAACGCGAATAAT 59.809 39.130 15.93 0.00 33.67 1.28
2964 3026 3.840890 TTGCTTCCAACGCGAATAATT 57.159 38.095 15.93 0.00 0.00 1.40
2968 3030 4.619336 TGCTTCCAACGCGAATAATTTTTC 59.381 37.500 15.93 0.00 0.00 2.29
2970 3032 5.003496 GCTTCCAACGCGAATAATTTTTCTC 59.997 40.000 15.93 0.00 0.00 2.87
2971 3033 4.643953 TCCAACGCGAATAATTTTTCTCG 58.356 39.130 15.93 16.14 39.16 4.04
3008 3071 4.216042 CCCATGTGAGCGATAATATTTGCA 59.784 41.667 0.00 0.00 0.00 4.08
3014 3077 6.207221 TGTGAGCGATAATATTTGCATCCATT 59.793 34.615 0.00 0.00 0.00 3.16
3016 3079 7.061441 GTGAGCGATAATATTTGCATCCATTTG 59.939 37.037 0.00 0.00 0.00 2.32
3057 3120 8.154856 TCTAACTGTACAAAATTGCTTCTACCT 58.845 33.333 0.00 0.00 0.00 3.08
3060 3123 6.073222 ACTGTACAAAATTGCTTCTACCTTCG 60.073 38.462 0.00 0.00 0.00 3.79
3067 3130 6.575162 AATTGCTTCTACCTTCGACAATTT 57.425 33.333 0.00 0.00 33.70 1.82
3138 3201 4.985413 TGGTCAATCATTGAATTCGCTTC 58.015 39.130 0.29 0.00 42.15 3.86
3141 3204 5.450965 GGTCAATCATTGAATTCGCTTCCAT 60.451 40.000 0.29 0.00 42.15 3.41
3181 3249 2.560542 TGGTAGAAATTTGTTGCCGCAT 59.439 40.909 0.00 0.00 0.00 4.73
3188 3256 5.405269 AGAAATTTGTTGCCGCATACTTTTC 59.595 36.000 0.00 1.61 0.00 2.29
3203 3271 7.410485 GCATACTTTTCCTAATGCAACTACTC 58.590 38.462 0.00 0.00 43.30 2.59
3206 3274 4.546829 TTTCCTAATGCAACTACTCGGT 57.453 40.909 0.00 0.00 0.00 4.69
3247 3315 5.007626 CCTGTGTTCATATACCATGTTTCCG 59.992 44.000 0.00 0.00 0.00 4.30
3303 3371 6.623486 TGAAATTTATGTGCTTCATCCACTG 58.377 36.000 0.00 0.00 37.91 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.134933 CGGTCCTCCCCTTCCTAGC 61.135 68.421 0.00 0.00 0.00 3.42
184 187 1.292223 CCGTGACATCACCCGAGTT 59.708 57.895 6.44 0.00 43.66 3.01
276 279 1.522569 CCTGTCACCCTCGAATCCC 59.477 63.158 0.00 0.00 0.00 3.85
386 390 0.756070 GCCTCCTAGTAGACGGCCTT 60.756 60.000 15.10 0.00 34.75 4.35
410 414 3.717294 GAAGAGGGCCCCGAAGCA 61.717 66.667 21.43 0.00 0.00 3.91
417 421 2.671682 GACCACAGAAGAGGGCCC 59.328 66.667 16.46 16.46 0.00 5.80
422 426 2.125912 CGGCGGACCACAGAAGAG 60.126 66.667 0.00 0.00 34.57 2.85
461 465 0.912487 TTCTTGGGGCCGACTGGTAT 60.912 55.000 0.00 0.00 37.67 2.73
462 466 1.536907 TTCTTGGGGCCGACTGGTA 60.537 57.895 0.00 0.00 37.67 3.25
520 524 4.450976 CATGGTATTTCAAGACATCGGGA 58.549 43.478 0.00 0.00 0.00 5.14
537 541 1.639635 GCCTCATCTGTCCCCATGGT 61.640 60.000 11.73 0.00 0.00 3.55
546 551 2.169352 GGTCATGTGTAGCCTCATCTGT 59.831 50.000 0.00 0.00 0.00 3.41
565 570 4.812653 AGGGTATTGTCGGAGTTATAGGT 58.187 43.478 0.00 0.00 0.00 3.08
593 598 3.317430 AGACGAGTACTCCGACACTTTTT 59.683 43.478 17.23 0.00 0.00 1.94
594 599 2.883386 AGACGAGTACTCCGACACTTTT 59.117 45.455 17.23 0.00 0.00 2.27
595 600 2.502295 AGACGAGTACTCCGACACTTT 58.498 47.619 17.23 0.00 0.00 2.66
596 601 2.181954 AGACGAGTACTCCGACACTT 57.818 50.000 17.23 0.00 0.00 3.16
597 602 2.181954 AAGACGAGTACTCCGACACT 57.818 50.000 17.23 6.69 0.00 3.55
598 603 3.434984 AGTTAAGACGAGTACTCCGACAC 59.565 47.826 17.23 6.84 0.00 3.67
599 604 3.668447 AGTTAAGACGAGTACTCCGACA 58.332 45.455 17.23 0.00 0.00 4.35
600 605 4.676849 AAGTTAAGACGAGTACTCCGAC 57.323 45.455 17.23 11.98 0.00 4.79
601 606 4.756642 TCAAAGTTAAGACGAGTACTCCGA 59.243 41.667 17.23 0.00 0.00 4.55
602 607 5.039480 TCAAAGTTAAGACGAGTACTCCG 57.961 43.478 17.23 13.98 0.00 4.63
603 608 6.445475 AGTTCAAAGTTAAGACGAGTACTCC 58.555 40.000 17.23 4.19 0.00 3.85
604 609 7.861872 AGAAGTTCAAAGTTAAGACGAGTACTC 59.138 37.037 13.18 13.18 0.00 2.59
605 610 7.714703 AGAAGTTCAAAGTTAAGACGAGTACT 58.285 34.615 5.50 0.00 0.00 2.73
606 611 7.927305 AGAAGTTCAAAGTTAAGACGAGTAC 57.073 36.000 5.50 0.00 0.00 2.73
608 613 9.194271 GAATAGAAGTTCAAAGTTAAGACGAGT 57.806 33.333 5.50 0.00 0.00 4.18
609 614 9.193133 TGAATAGAAGTTCAAAGTTAAGACGAG 57.807 33.333 5.50 0.00 35.31 4.18
610 615 9.537192 TTGAATAGAAGTTCAAAGTTAAGACGA 57.463 29.630 5.50 0.00 43.12 4.20
626 631 9.712305 CCAGTGGTACCTTATATTGAATAGAAG 57.288 37.037 14.36 11.55 34.65 2.85
627 632 9.442062 TCCAGTGGTACCTTATATTGAATAGAA 57.558 33.333 14.36 0.00 0.00 2.10
628 633 8.867097 GTCCAGTGGTACCTTATATTGAATAGA 58.133 37.037 14.36 0.00 0.00 1.98
629 634 7.813148 CGTCCAGTGGTACCTTATATTGAATAG 59.187 40.741 14.36 0.00 0.00 1.73
630 635 7.663827 CGTCCAGTGGTACCTTATATTGAATA 58.336 38.462 14.36 0.00 0.00 1.75
631 636 6.522054 CGTCCAGTGGTACCTTATATTGAAT 58.478 40.000 14.36 0.00 0.00 2.57
632 637 5.682990 GCGTCCAGTGGTACCTTATATTGAA 60.683 44.000 14.36 0.00 0.00 2.69
633 638 4.202182 GCGTCCAGTGGTACCTTATATTGA 60.202 45.833 14.36 0.00 0.00 2.57
634 639 4.056050 GCGTCCAGTGGTACCTTATATTG 58.944 47.826 14.36 0.00 0.00 1.90
635 640 3.707611 TGCGTCCAGTGGTACCTTATATT 59.292 43.478 14.36 0.00 0.00 1.28
636 641 3.302161 TGCGTCCAGTGGTACCTTATAT 58.698 45.455 14.36 0.00 0.00 0.86
637 642 2.737544 TGCGTCCAGTGGTACCTTATA 58.262 47.619 14.36 0.00 0.00 0.98
638 643 1.563924 TGCGTCCAGTGGTACCTTAT 58.436 50.000 14.36 0.00 0.00 1.73
639 644 1.001181 GTTGCGTCCAGTGGTACCTTA 59.999 52.381 14.36 0.00 0.00 2.69
640 645 0.250166 GTTGCGTCCAGTGGTACCTT 60.250 55.000 14.36 0.00 0.00 3.50
641 646 1.370064 GTTGCGTCCAGTGGTACCT 59.630 57.895 14.36 0.00 0.00 3.08
642 647 1.670083 GGTTGCGTCCAGTGGTACC 60.670 63.158 9.54 4.43 0.00 3.34
643 648 0.250166 AAGGTTGCGTCCAGTGGTAC 60.250 55.000 9.54 5.41 0.00 3.34
644 649 0.034337 GAAGGTTGCGTCCAGTGGTA 59.966 55.000 9.54 0.00 0.00 3.25
645 650 1.227853 GAAGGTTGCGTCCAGTGGT 60.228 57.895 9.54 0.00 0.00 4.16
646 651 0.817634 TTGAAGGTTGCGTCCAGTGG 60.818 55.000 1.40 1.40 0.00 4.00
647 652 1.197721 GATTGAAGGTTGCGTCCAGTG 59.802 52.381 0.03 0.00 0.00 3.66
648 653 1.523758 GATTGAAGGTTGCGTCCAGT 58.476 50.000 0.03 0.00 0.00 4.00
649 654 0.443869 CGATTGAAGGTTGCGTCCAG 59.556 55.000 0.03 0.00 0.00 3.86
650 655 1.573829 GCGATTGAAGGTTGCGTCCA 61.574 55.000 0.00 0.00 0.00 4.02
651 656 1.134694 GCGATTGAAGGTTGCGTCC 59.865 57.895 0.00 0.00 0.00 4.79
652 657 0.179215 CTGCGATTGAAGGTTGCGTC 60.179 55.000 0.00 0.00 0.00 5.19
653 658 0.602638 TCTGCGATTGAAGGTTGCGT 60.603 50.000 0.00 0.00 0.00 5.24
654 659 0.729116 ATCTGCGATTGAAGGTTGCG 59.271 50.000 0.00 0.00 0.00 4.85
655 660 1.064654 GGATCTGCGATTGAAGGTTGC 59.935 52.381 0.00 0.00 0.00 4.17
656 661 1.672881 GGGATCTGCGATTGAAGGTTG 59.327 52.381 0.00 0.00 0.00 3.77
657 662 1.408822 GGGGATCTGCGATTGAAGGTT 60.409 52.381 0.00 0.00 0.00 3.50
658 663 0.181350 GGGGATCTGCGATTGAAGGT 59.819 55.000 0.00 0.00 0.00 3.50
659 664 0.181114 TGGGGATCTGCGATTGAAGG 59.819 55.000 0.00 0.00 0.00 3.46
660 665 2.042686 TTGGGGATCTGCGATTGAAG 57.957 50.000 0.00 0.00 0.00 3.02
661 666 2.505650 TTTGGGGATCTGCGATTGAA 57.494 45.000 0.00 0.00 0.00 2.69
662 667 2.092484 TGATTTGGGGATCTGCGATTGA 60.092 45.455 0.00 0.00 0.00 2.57
663 668 2.033801 GTGATTTGGGGATCTGCGATTG 59.966 50.000 0.00 0.00 0.00 2.67
664 669 2.092212 AGTGATTTGGGGATCTGCGATT 60.092 45.455 0.00 0.00 0.00 3.34
665 670 1.492176 AGTGATTTGGGGATCTGCGAT 59.508 47.619 0.00 0.00 0.00 4.58
666 671 0.911769 AGTGATTTGGGGATCTGCGA 59.088 50.000 0.00 0.00 0.00 5.10
698 703 2.203070 ATTCAGTGCCGGCCGATC 60.203 61.111 30.73 18.71 0.00 3.69
701 706 2.745884 TTGATTCAGTGCCGGCCG 60.746 61.111 26.77 21.04 0.00 6.13
712 717 1.806542 TGCTCCAGCGAAACTTGATTC 59.193 47.619 0.00 0.00 45.83 2.52
746 779 0.249398 ATGGTGTTCGGAGTACCAGC 59.751 55.000 16.90 6.49 46.64 4.85
770 803 3.855853 GGCCGAGGAGAAGAGGGC 61.856 72.222 0.00 0.00 43.01 5.19
782 815 6.299922 TGTACATTATATGGATTTTGGCCGA 58.700 36.000 0.00 0.00 33.60 5.54
786 819 7.750458 GCACGATGTACATTATATGGATTTTGG 59.250 37.037 10.30 0.00 33.60 3.28
789 822 6.374333 GGGCACGATGTACATTATATGGATTT 59.626 38.462 10.30 0.00 33.60 2.17
790 823 5.880332 GGGCACGATGTACATTATATGGATT 59.120 40.000 10.30 0.00 33.60 3.01
791 824 5.045942 TGGGCACGATGTACATTATATGGAT 60.046 40.000 10.30 0.00 33.60 3.41
792 825 4.284746 TGGGCACGATGTACATTATATGGA 59.715 41.667 10.30 0.00 33.60 3.41
793 826 4.574892 TGGGCACGATGTACATTATATGG 58.425 43.478 10.30 0.00 33.60 2.74
794 827 5.931724 TCTTGGGCACGATGTACATTATATG 59.068 40.000 10.30 7.40 0.00 1.78
795 828 5.932303 GTCTTGGGCACGATGTACATTATAT 59.068 40.000 10.30 0.00 0.00 0.86
796 829 5.294356 GTCTTGGGCACGATGTACATTATA 58.706 41.667 10.30 0.00 0.00 0.98
797 830 4.127171 GTCTTGGGCACGATGTACATTAT 58.873 43.478 10.30 0.00 0.00 1.28
798 831 3.527533 GTCTTGGGCACGATGTACATTA 58.472 45.455 10.30 0.00 0.00 1.90
799 832 2.356135 GTCTTGGGCACGATGTACATT 58.644 47.619 10.30 0.00 0.00 2.71
800 833 1.739035 CGTCTTGGGCACGATGTACAT 60.739 52.381 8.43 8.43 39.75 2.29
801 834 0.389296 CGTCTTGGGCACGATGTACA 60.389 55.000 0.00 0.00 39.75 2.90
835 869 0.463295 AGGCATCATCGTCTTGGCTG 60.463 55.000 0.00 0.00 43.70 4.85
837 871 1.493950 CGAGGCATCATCGTCTTGGC 61.494 60.000 0.00 0.00 35.48 4.52
844 878 1.371022 CGAGGTCGAGGCATCATCG 60.371 63.158 0.00 0.00 43.02 3.84
866 900 1.616374 TGTGCATCACAGTACTCGGAA 59.384 47.619 0.00 0.00 39.62 4.30
897 931 6.258068 CACAGCATCAGCATATATCAATCGAT 59.742 38.462 0.00 0.00 45.49 3.59
903 937 4.634443 GCATCACAGCATCAGCATATATCA 59.366 41.667 0.00 0.00 45.49 2.15
904 938 4.634443 TGCATCACAGCATCAGCATATATC 59.366 41.667 0.00 0.00 45.49 1.63
907 948 2.858745 TGCATCACAGCATCAGCATAT 58.141 42.857 0.00 0.00 45.49 1.78
914 955 1.226211 GCGTGTGCATCACAGCATC 60.226 57.895 19.80 0.00 45.43 3.91
944 985 3.734231 CGGGCGCATCCTATTTATATACG 59.266 47.826 10.83 0.00 34.39 3.06
946 987 3.493699 GCCGGGCGCATCCTATTTATATA 60.494 47.826 10.83 0.00 37.47 0.86
952 998 3.537206 GAGCCGGGCGCATCCTATT 62.537 63.158 18.32 0.00 41.38 1.73
963 1009 3.449227 TAGACTGTGCGAGCCGGG 61.449 66.667 2.18 0.00 0.00 5.73
966 1012 2.202623 CCGTAGACTGTGCGAGCC 60.203 66.667 0.00 0.00 36.12 4.70
967 1013 2.881352 GCCGTAGACTGTGCGAGC 60.881 66.667 0.00 0.00 36.12 5.03
969 1015 1.080772 CTTGCCGTAGACTGTGCGA 60.081 57.895 0.00 0.00 36.12 5.10
970 1016 2.730672 GCTTGCCGTAGACTGTGCG 61.731 63.158 0.00 0.00 0.00 5.34
971 1017 1.630244 CTGCTTGCCGTAGACTGTGC 61.630 60.000 0.00 0.00 0.00 4.57
973 1019 1.185618 TCCTGCTTGCCGTAGACTGT 61.186 55.000 0.00 0.00 0.00 3.55
1077 1125 4.268939 TGGAAACCGACGTCGCGT 62.269 61.111 31.73 25.80 45.10 6.01
1212 1260 3.823330 GTGATCGGGTCCGCGACT 61.823 66.667 8.23 0.00 39.59 4.18
1254 1302 1.756950 CAGGTACTCGCCCTGGCTA 60.757 63.158 6.60 0.00 44.77 3.93
1459 1507 2.183555 GAAGCACGACGGGTAGGG 59.816 66.667 0.00 0.00 0.00 3.53
1702 1750 0.173708 GTGAGGCAGTAGGAGAACCG 59.826 60.000 0.00 0.00 41.83 4.44
2279 2333 1.301716 GACAAGAGGCTGTTGGCGA 60.302 57.895 25.79 0.00 44.18 5.54
2329 2383 5.513495 GCTGATCTATATTAAACCGAGCGAG 59.487 44.000 0.00 0.00 0.00 5.03
2351 2405 5.636121 TCGAAATACTGAACGTACATTTGCT 59.364 36.000 0.00 0.00 0.00 3.91
2405 2463 2.821437 TGTAAACTGAGAGAGGGGGAG 58.179 52.381 0.00 0.00 0.00 4.30
2406 2464 3.173965 CTTGTAAACTGAGAGAGGGGGA 58.826 50.000 0.00 0.00 0.00 4.81
2407 2465 2.237392 CCTTGTAAACTGAGAGAGGGGG 59.763 54.545 0.00 0.00 0.00 5.40
2408 2466 2.355209 GCCTTGTAAACTGAGAGAGGGG 60.355 54.545 0.00 0.00 0.00 4.79
2409 2467 2.675317 CGCCTTGTAAACTGAGAGAGGG 60.675 54.545 0.00 0.00 0.00 4.30
2410 2468 2.028930 ACGCCTTGTAAACTGAGAGAGG 60.029 50.000 0.00 0.00 0.00 3.69
2411 2469 2.989840 CACGCCTTGTAAACTGAGAGAG 59.010 50.000 0.00 0.00 0.00 3.20
2412 2470 2.866460 GCACGCCTTGTAAACTGAGAGA 60.866 50.000 0.00 0.00 0.00 3.10
2413 2471 1.461127 GCACGCCTTGTAAACTGAGAG 59.539 52.381 0.00 0.00 0.00 3.20
2414 2472 1.508632 GCACGCCTTGTAAACTGAGA 58.491 50.000 0.00 0.00 0.00 3.27
2415 2473 0.163788 CGCACGCCTTGTAAACTGAG 59.836 55.000 0.00 0.00 0.00 3.35
2416 2474 0.531090 ACGCACGCCTTGTAAACTGA 60.531 50.000 0.00 0.00 0.00 3.41
2417 2475 1.141645 TACGCACGCCTTGTAAACTG 58.858 50.000 0.00 0.00 0.00 3.16
2418 2476 2.088950 ATACGCACGCCTTGTAAACT 57.911 45.000 0.00 0.00 0.00 2.66
2419 2477 3.060070 GGATATACGCACGCCTTGTAAAC 60.060 47.826 0.00 0.00 0.00 2.01
2420 2478 3.125316 GGATATACGCACGCCTTGTAAA 58.875 45.455 0.00 0.00 0.00 2.01
2421 2479 2.363038 AGGATATACGCACGCCTTGTAA 59.637 45.455 0.00 0.00 0.00 2.41
2422 2480 1.958579 AGGATATACGCACGCCTTGTA 59.041 47.619 0.00 0.00 0.00 2.41
2423 2481 0.750850 AGGATATACGCACGCCTTGT 59.249 50.000 0.00 0.00 0.00 3.16
2424 2482 1.865865 AAGGATATACGCACGCCTTG 58.134 50.000 0.00 0.00 37.55 3.61
2425 2483 2.029290 CCTAAGGATATACGCACGCCTT 60.029 50.000 0.00 0.00 41.51 4.35
2426 2484 1.544691 CCTAAGGATATACGCACGCCT 59.455 52.381 0.00 0.00 0.00 5.52
2427 2485 1.271656 ACCTAAGGATATACGCACGCC 59.728 52.381 0.00 0.00 0.00 5.68
2428 2486 2.593257 GACCTAAGGATATACGCACGC 58.407 52.381 0.00 0.00 0.00 5.34
2429 2487 2.225019 ACGACCTAAGGATATACGCACG 59.775 50.000 0.00 0.00 0.00 5.34
2430 2488 3.251729 TGACGACCTAAGGATATACGCAC 59.748 47.826 0.00 0.00 0.00 5.34
2431 2489 3.479489 TGACGACCTAAGGATATACGCA 58.521 45.455 0.00 0.00 0.00 5.24
2432 2490 4.494350 TTGACGACCTAAGGATATACGC 57.506 45.455 0.00 0.00 0.00 4.42
2433 2491 7.114529 GTCAAATTGACGACCTAAGGATATACG 59.885 40.741 10.58 0.00 37.67 3.06
2434 2492 8.295569 GTCAAATTGACGACCTAAGGATATAC 57.704 38.462 10.58 0.00 37.67 1.47
2449 2507 6.039382 ACTTCTGTTAGGTTGGTCAAATTGAC 59.961 38.462 17.16 17.16 46.23 3.18
2450 2508 6.126409 ACTTCTGTTAGGTTGGTCAAATTGA 58.874 36.000 0.00 0.00 0.00 2.57
2451 2509 6.039270 TGACTTCTGTTAGGTTGGTCAAATTG 59.961 38.462 0.00 0.00 30.81 2.32
2452 2510 6.126409 TGACTTCTGTTAGGTTGGTCAAATT 58.874 36.000 0.00 0.00 30.81 1.82
2453 2511 5.690865 TGACTTCTGTTAGGTTGGTCAAAT 58.309 37.500 0.00 0.00 30.81 2.32
2454 2512 5.105567 TGACTTCTGTTAGGTTGGTCAAA 57.894 39.130 0.00 0.00 30.81 2.69
2455 2513 4.764050 TGACTTCTGTTAGGTTGGTCAA 57.236 40.909 0.00 0.00 30.81 3.18
2456 2514 4.974645 ATGACTTCTGTTAGGTTGGTCA 57.025 40.909 0.00 0.00 36.80 4.02
2503 2561 9.971922 CCTTTTGAAAATAGAACATCTGAAGTT 57.028 29.630 0.00 0.00 0.00 2.66
2504 2562 9.136323 ACCTTTTGAAAATAGAACATCTGAAGT 57.864 29.630 0.00 0.00 0.00 3.01
2505 2563 9.403110 CACCTTTTGAAAATAGAACATCTGAAG 57.597 33.333 0.00 0.00 0.00 3.02
2506 2564 8.912988 ACACCTTTTGAAAATAGAACATCTGAA 58.087 29.630 0.00 0.00 0.00 3.02
2507 2565 8.463930 ACACCTTTTGAAAATAGAACATCTGA 57.536 30.769 0.00 0.00 0.00 3.27
2554 2612 9.158097 AGGTTGCCAATTTTACCATCATATTAT 57.842 29.630 0.00 0.00 33.02 1.28
2555 2613 8.546083 AGGTTGCCAATTTTACCATCATATTA 57.454 30.769 0.00 0.00 33.02 0.98
2556 2614 7.436320 AGGTTGCCAATTTTACCATCATATT 57.564 32.000 0.00 0.00 33.02 1.28
2557 2615 7.233348 CCTAGGTTGCCAATTTTACCATCATAT 59.767 37.037 0.00 0.00 33.02 1.78
2558 2616 6.549364 CCTAGGTTGCCAATTTTACCATCATA 59.451 38.462 0.00 0.00 33.02 2.15
2559 2617 5.363580 CCTAGGTTGCCAATTTTACCATCAT 59.636 40.000 0.00 0.00 33.02 2.45
2560 2618 4.709397 CCTAGGTTGCCAATTTTACCATCA 59.291 41.667 0.00 0.00 33.02 3.07
2561 2619 4.709886 ACCTAGGTTGCCAATTTTACCATC 59.290 41.667 9.21 0.00 33.02 3.51
2562 2620 4.683643 ACCTAGGTTGCCAATTTTACCAT 58.316 39.130 9.21 0.00 33.02 3.55
2563 2621 4.120946 ACCTAGGTTGCCAATTTTACCA 57.879 40.909 9.21 0.00 33.02 3.25
2564 2622 6.017687 CGTATACCTAGGTTGCCAATTTTACC 60.018 42.308 22.11 0.00 0.00 2.85
2565 2623 6.539826 ACGTATACCTAGGTTGCCAATTTTAC 59.460 38.462 22.11 1.58 0.00 2.01
2566 2624 6.539464 CACGTATACCTAGGTTGCCAATTTTA 59.461 38.462 22.11 0.00 0.00 1.52
2567 2625 5.355910 CACGTATACCTAGGTTGCCAATTTT 59.644 40.000 22.11 0.00 0.00 1.82
2568 2626 4.879545 CACGTATACCTAGGTTGCCAATTT 59.120 41.667 22.11 0.00 0.00 1.82
2569 2627 4.080751 ACACGTATACCTAGGTTGCCAATT 60.081 41.667 22.11 0.00 0.00 2.32
2570 2628 3.453353 ACACGTATACCTAGGTTGCCAAT 59.547 43.478 22.11 9.64 0.00 3.16
2571 2629 2.833338 ACACGTATACCTAGGTTGCCAA 59.167 45.455 22.11 0.75 0.00 4.52
2572 2630 2.459644 ACACGTATACCTAGGTTGCCA 58.540 47.619 22.11 1.21 0.00 4.92
2573 2631 3.005155 CCTACACGTATACCTAGGTTGCC 59.995 52.174 22.11 7.02 0.00 4.52
2574 2632 3.885297 TCCTACACGTATACCTAGGTTGC 59.115 47.826 22.11 10.53 0.00 4.17
2575 2633 6.645790 AATCCTACACGTATACCTAGGTTG 57.354 41.667 22.11 14.40 0.00 3.77
2576 2634 6.608808 ACAAATCCTACACGTATACCTAGGTT 59.391 38.462 22.11 10.62 0.00 3.50
2577 2635 6.131961 ACAAATCCTACACGTATACCTAGGT 58.868 40.000 20.57 20.57 0.00 3.08
2578 2636 6.645790 ACAAATCCTACACGTATACCTAGG 57.354 41.667 7.41 7.41 0.00 3.02
2579 2637 9.455847 GTTTACAAATCCTACACGTATACCTAG 57.544 37.037 0.00 0.00 0.00 3.02
2580 2638 9.189156 AGTTTACAAATCCTACACGTATACCTA 57.811 33.333 0.00 0.00 0.00 3.08
2581 2639 7.977853 CAGTTTACAAATCCTACACGTATACCT 59.022 37.037 0.00 0.00 0.00 3.08
2582 2640 7.975616 TCAGTTTACAAATCCTACACGTATACC 59.024 37.037 0.00 0.00 0.00 2.73
2583 2641 8.915871 TCAGTTTACAAATCCTACACGTATAC 57.084 34.615 0.00 0.00 0.00 1.47
2584 2642 9.926158 TTTCAGTTTACAAATCCTACACGTATA 57.074 29.630 0.00 0.00 0.00 1.47
2585 2643 8.715088 GTTTCAGTTTACAAATCCTACACGTAT 58.285 33.333 0.00 0.00 0.00 3.06
2586 2644 7.096106 CGTTTCAGTTTACAAATCCTACACGTA 60.096 37.037 0.00 0.00 0.00 3.57
2587 2645 6.292488 CGTTTCAGTTTACAAATCCTACACGT 60.292 38.462 0.00 0.00 0.00 4.49
2588 2646 6.068931 CGTTTCAGTTTACAAATCCTACACG 58.931 40.000 0.00 0.00 0.00 4.49
2589 2647 6.203338 TCCGTTTCAGTTTACAAATCCTACAC 59.797 38.462 0.00 0.00 0.00 2.90
2590 2648 6.289834 TCCGTTTCAGTTTACAAATCCTACA 58.710 36.000 0.00 0.00 0.00 2.74
2591 2649 6.128363 CCTCCGTTTCAGTTTACAAATCCTAC 60.128 42.308 0.00 0.00 0.00 3.18
2592 2650 5.935789 CCTCCGTTTCAGTTTACAAATCCTA 59.064 40.000 0.00 0.00 0.00 2.94
2593 2651 4.760204 CCTCCGTTTCAGTTTACAAATCCT 59.240 41.667 0.00 0.00 0.00 3.24
2594 2652 4.082949 CCCTCCGTTTCAGTTTACAAATCC 60.083 45.833 0.00 0.00 0.00 3.01
2595 2653 4.082949 CCCCTCCGTTTCAGTTTACAAATC 60.083 45.833 0.00 0.00 0.00 2.17
2596 2654 3.824443 CCCCTCCGTTTCAGTTTACAAAT 59.176 43.478 0.00 0.00 0.00 2.32
2597 2655 3.215975 CCCCTCCGTTTCAGTTTACAAA 58.784 45.455 0.00 0.00 0.00 2.83
2598 2656 2.173143 ACCCCTCCGTTTCAGTTTACAA 59.827 45.455 0.00 0.00 0.00 2.41
2599 2657 1.770061 ACCCCTCCGTTTCAGTTTACA 59.230 47.619 0.00 0.00 0.00 2.41
2600 2658 2.556144 ACCCCTCCGTTTCAGTTTAC 57.444 50.000 0.00 0.00 0.00 2.01
2601 2659 2.027837 GCTACCCCTCCGTTTCAGTTTA 60.028 50.000 0.00 0.00 0.00 2.01
2602 2660 1.271217 GCTACCCCTCCGTTTCAGTTT 60.271 52.381 0.00 0.00 0.00 2.66
2603 2661 0.323957 GCTACCCCTCCGTTTCAGTT 59.676 55.000 0.00 0.00 0.00 3.16
2604 2662 0.834687 TGCTACCCCTCCGTTTCAGT 60.835 55.000 0.00 0.00 0.00 3.41
2605 2663 0.323629 TTGCTACCCCTCCGTTTCAG 59.676 55.000 0.00 0.00 0.00 3.02
2606 2664 0.766131 TTTGCTACCCCTCCGTTTCA 59.234 50.000 0.00 0.00 0.00 2.69
2607 2665 1.162698 GTTTGCTACCCCTCCGTTTC 58.837 55.000 0.00 0.00 0.00 2.78
2608 2666 0.475044 TGTTTGCTACCCCTCCGTTT 59.525 50.000 0.00 0.00 0.00 3.60
2609 2667 0.696501 ATGTTTGCTACCCCTCCGTT 59.303 50.000 0.00 0.00 0.00 4.44
2610 2668 0.035439 CATGTTTGCTACCCCTCCGT 60.035 55.000 0.00 0.00 0.00 4.69
2611 2669 1.376609 GCATGTTTGCTACCCCTCCG 61.377 60.000 0.00 0.00 45.77 4.63
2612 2670 2.493547 GCATGTTTGCTACCCCTCC 58.506 57.895 0.00 0.00 45.77 4.30
2632 2690 9.698617 GTGATATTTTTCTTGTGATAACGTACC 57.301 33.333 0.00 0.00 0.00 3.34
2641 2699 8.289618 CGGAAAGAAGTGATATTTTTCTTGTGA 58.710 33.333 9.44 0.00 40.12 3.58
2674 2732 0.107214 AACACCACGGCCATCATAGG 60.107 55.000 2.24 0.00 0.00 2.57
2679 2737 3.263941 GTGAACACCACGGCCATC 58.736 61.111 2.24 0.00 35.86 3.51
2696 2754 6.961359 ATGCATTGTGAATTTGTGATCAAG 57.039 33.333 0.00 0.00 34.88 3.02
2697 2755 6.369340 GGAATGCATTGTGAATTTGTGATCAA 59.631 34.615 18.59 0.00 0.00 2.57
2701 2759 5.211174 TGGAATGCATTGTGAATTTGTGA 57.789 34.783 18.59 0.00 0.00 3.58
2702 2760 5.236695 TGTTGGAATGCATTGTGAATTTGTG 59.763 36.000 18.59 0.00 0.00 3.33
2703 2761 5.366460 TGTTGGAATGCATTGTGAATTTGT 58.634 33.333 18.59 0.00 0.00 2.83
2704 2762 5.926214 TGTTGGAATGCATTGTGAATTTG 57.074 34.783 18.59 0.00 0.00 2.32
2705 2763 8.618702 TTTATGTTGGAATGCATTGTGAATTT 57.381 26.923 18.59 0.00 0.00 1.82
2706 2764 8.670135 CATTTATGTTGGAATGCATTGTGAATT 58.330 29.630 18.59 0.28 0.00 2.17
2707 2765 8.203937 CATTTATGTTGGAATGCATTGTGAAT 57.796 30.769 18.59 6.56 0.00 2.57
2708 2766 7.598189 CATTTATGTTGGAATGCATTGTGAA 57.402 32.000 18.59 3.46 0.00 3.18
2762 2822 2.698274 TCAGACATGTGTGTGGTGTAGT 59.302 45.455 21.18 0.00 39.49 2.73
2763 2823 3.243873 ACTCAGACATGTGTGTGGTGTAG 60.244 47.826 23.76 15.05 39.49 2.74
2769 2829 0.786581 GCGACTCAGACATGTGTGTG 59.213 55.000 21.18 20.51 39.09 3.82
2770 2830 0.389025 TGCGACTCAGACATGTGTGT 59.611 50.000 21.18 6.79 42.49 3.72
2800 2862 8.459394 ACAATTATGGGATGGAGATTAAATCCT 58.541 33.333 10.50 0.00 39.90 3.24
2801 2863 8.655935 ACAATTATGGGATGGAGATTAAATCC 57.344 34.615 3.63 3.63 39.38 3.01
2802 2864 9.525826 AGACAATTATGGGATGGAGATTAAATC 57.474 33.333 0.00 0.00 0.00 2.17
2810 2872 3.567164 GTGCAGACAATTATGGGATGGAG 59.433 47.826 0.00 0.00 0.00 3.86
2812 2874 2.624838 GGTGCAGACAATTATGGGATGG 59.375 50.000 0.00 0.00 0.00 3.51
2826 2888 0.179004 ACGTGATTTTGGGGTGCAGA 60.179 50.000 0.00 0.00 0.00 4.26
2921 2983 7.113544 GCAAACTCTAATAACAGTTGAAGCAAC 59.886 37.037 0.00 2.22 43.83 4.17
2934 2996 4.142988 CGCGTTGGAAGCAAACTCTAATAA 60.143 41.667 0.00 0.00 34.19 1.40
2940 3002 0.306533 TTCGCGTTGGAAGCAAACTC 59.693 50.000 5.77 0.00 34.19 3.01
2961 3023 8.739972 GGGATATATTACATGGCGAGAAAAATT 58.260 33.333 0.00 0.00 0.00 1.82
2963 3025 7.227873 TGGGATATATTACATGGCGAGAAAAA 58.772 34.615 0.00 0.00 0.00 1.94
2964 3026 6.774673 TGGGATATATTACATGGCGAGAAAA 58.225 36.000 0.00 0.00 0.00 2.29
2968 3030 5.525012 CACATGGGATATATTACATGGCGAG 59.475 44.000 23.33 12.96 43.66 5.03
2970 3032 5.427378 TCACATGGGATATATTACATGGCG 58.573 41.667 23.33 17.35 43.66 5.69
2971 3033 5.297776 GCTCACATGGGATATATTACATGGC 59.702 44.000 23.33 17.08 43.66 4.40
2984 3047 4.455533 GCAAATATTATCGCTCACATGGGA 59.544 41.667 0.00 0.00 0.00 4.37
3027 3090 8.903820 AGAAGCAATTTTGTACAGTTAGAAACT 58.096 29.630 0.00 0.00 44.06 2.66
3102 3165 8.810427 CAATGATTGACCAAATATTTGTACTGC 58.190 33.333 23.24 10.83 36.45 4.40
3116 3179 4.142403 GGAAGCGAATTCAATGATTGACCA 60.142 41.667 7.48 0.00 39.87 4.02
3117 3180 4.142403 TGGAAGCGAATTCAATGATTGACC 60.142 41.667 7.48 3.97 39.87 4.02
3159 3227 2.362397 TGCGGCAACAAATTTCTACCAA 59.638 40.909 0.00 0.00 0.00 3.67
3160 3228 1.957177 TGCGGCAACAAATTTCTACCA 59.043 42.857 0.00 0.00 0.00 3.25
3177 3245 5.235305 AGTTGCATTAGGAAAAGTATGCG 57.765 39.130 0.00 0.00 44.77 4.73
3181 3249 6.103997 CCGAGTAGTTGCATTAGGAAAAGTA 58.896 40.000 0.00 0.00 0.00 2.24
3188 3256 3.130516 TCTGACCGAGTAGTTGCATTAGG 59.869 47.826 0.00 0.00 0.00 2.69
3203 3271 3.126831 GGAAGCATGATAACTCTGACCG 58.873 50.000 0.00 0.00 0.00 4.79
3206 3274 4.223700 ACACAGGAAGCATGATAACTCTGA 59.776 41.667 0.00 0.00 0.00 3.27
3247 3315 9.929722 TTGAACGAAGCAAATATATATGTTGTC 57.070 29.630 14.03 9.41 0.00 3.18
3303 3371 8.644318 ATTGGTAGTCGAACACAAGTTATATC 57.356 34.615 0.00 0.00 38.30 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.