Multiple sequence alignment - TraesCS5D01G308800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G308800 chr5D 100.000 5239 0 0 987 6225 406168911 406163673 0.000000e+00 9675.0
1 TraesCS5D01G308800 chr5D 100.000 623 0 0 1 623 406169897 406169275 0.000000e+00 1151.0
2 TraesCS5D01G308800 chr5D 95.238 126 6 0 2163 2288 461072602 461072727 3.810000e-47 200.0
3 TraesCS5D01G308800 chr5D 91.667 108 6 2 4332 4436 51073283 51073390 5.030000e-31 147.0
4 TraesCS5D01G308800 chr5B 97.166 2117 32 9 2226 4336 486734718 486732624 0.000000e+00 3552.0
5 TraesCS5D01G308800 chr5B 92.028 1430 75 14 4428 5849 486732625 486731227 0.000000e+00 1973.0
6 TraesCS5D01G308800 chr5B 93.190 1072 41 2 987 2055 486736123 486735081 0.000000e+00 1546.0
7 TraesCS5D01G308800 chr5B 96.970 165 5 0 2135 2299 486734868 486734704 1.710000e-70 278.0
8 TraesCS5D01G308800 chr5B 97.701 87 1 1 2051 2137 486735031 486734946 1.400000e-31 148.0
9 TraesCS5D01G308800 chr5B 92.500 40 3 0 5878 5917 6214540 6214501 2.420000e-04 58.4
10 TraesCS5D01G308800 chr5A 97.608 1965 38 3 2135 4090 511880196 511878232 0.000000e+00 3360.0
11 TraesCS5D01G308800 chr5A 95.042 1069 23 3 987 2055 511881798 511880760 0.000000e+00 1653.0
12 TraesCS5D01G308800 chr5A 93.998 1033 38 10 4760 5788 511877625 511876613 0.000000e+00 1543.0
13 TraesCS5D01G308800 chr5A 96.564 291 10 0 4428 4718 511877912 511877622 3.370000e-132 483.0
14 TraesCS5D01G308800 chr5A 96.032 252 7 1 4088 4336 511878162 511877911 2.090000e-109 407.0
15 TraesCS5D01G308800 chr5A 88.803 259 15 8 46 292 511883620 511883364 7.840000e-79 305.0
16 TraesCS5D01G308800 chr5A 95.868 121 5 0 496 616 511881926 511881806 4.920000e-46 196.0
17 TraesCS5D01G308800 chr5A 94.488 127 6 1 2136 2261 511880547 511880421 1.770000e-45 195.0
18 TraesCS5D01G308800 chr5A 92.035 113 7 2 5828 5940 511876236 511876126 2.320000e-34 158.0
19 TraesCS5D01G308800 chr5A 98.837 86 1 0 2051 2136 511880711 511880626 3.010000e-33 154.0
20 TraesCS5D01G308800 chr5A 92.308 91 7 0 2252 2342 511880257 511880167 5.060000e-26 130.0
21 TraesCS5D01G308800 chr3A 89.226 297 20 7 5929 6222 620538670 620538957 1.650000e-95 361.0
22 TraesCS5D01G308800 chr3A 93.023 129 9 0 2160 2288 53566346 53566474 8.240000e-44 189.0
23 TraesCS5D01G308800 chr3A 78.125 128 20 7 5654 5774 303099871 303099997 2.410000e-09 75.0
24 TraesCS5D01G308800 chr3A 94.737 38 1 1 5654 5690 303149024 303149061 2.420000e-04 58.4
25 TraesCS5D01G308800 chr1D 89.492 295 17 7 5933 6225 426647976 426648258 1.650000e-95 361.0
26 TraesCS5D01G308800 chr1D 87.869 305 21 6 5929 6225 311752111 311752407 1.660000e-90 344.0
27 TraesCS5D01G308800 chr1D 88.095 294 26 4 5933 6225 416659851 416660136 2.150000e-89 340.0
28 TraesCS5D01G308800 chr7D 89.384 292 22 4 5933 6223 133198523 133198240 5.930000e-95 359.0
29 TraesCS5D01G308800 chr7D 88.000 300 27 4 5927 6224 57536948 57537240 4.620000e-91 346.0
30 TraesCS5D01G308800 chr7D 87.919 298 26 5 5929 6225 551501243 551501531 5.980000e-90 342.0
31 TraesCS5D01G308800 chr7D 93.651 126 8 0 2163 2288 183790423 183790298 8.240000e-44 189.0
32 TraesCS5D01G308800 chr3D 88.000 300 26 3 5929 6225 512531802 512532094 4.620000e-91 346.0
33 TraesCS5D01G308800 chr2D 89.600 250 18 3 5927 6176 45502518 45502759 1.690000e-80 311.0
34 TraesCS5D01G308800 chr2D 93.333 105 4 2 4335 4437 445894980 445894877 1.080000e-32 152.0
35 TraesCS5D01G308800 chr2B 93.651 126 8 0 2163 2288 387104491 387104616 8.240000e-44 189.0
36 TraesCS5D01G308800 chr2B 90.647 139 12 1 2151 2288 25187270 25187132 3.830000e-42 183.0
37 TraesCS5D01G308800 chr6A 94.175 103 3 2 4332 4431 499211795 499211693 3.010000e-33 154.0
38 TraesCS5D01G308800 chr6A 88.333 120 9 4 4334 4449 315625363 315625245 8.410000e-29 139.0
39 TraesCS5D01G308800 chr6A 81.343 134 16 7 5654 5781 114236818 114236948 3.970000e-17 100.0
40 TraesCS5D01G308800 chr6A 77.953 127 22 5 5654 5774 350839378 350839504 2.410000e-09 75.0
41 TraesCS5D01G308800 chr4D 94.898 98 3 1 4335 4430 289339907 289339810 1.080000e-32 152.0
42 TraesCS5D01G308800 chr4D 94.000 100 4 1 4333 4430 258886399 258886300 3.890000e-32 150.0
43 TraesCS5D01G308800 chr4B 94.059 101 4 1 4333 4431 235358499 235358399 1.080000e-32 152.0
44 TraesCS5D01G308800 chr2A 91.892 111 6 2 4331 4438 68155820 68155930 1.080000e-32 152.0
45 TraesCS5D01G308800 chr6D 94.000 100 4 1 4333 4430 200398812 200398713 3.890000e-32 150.0
46 TraesCS5D01G308800 chr6D 82.090 134 14 8 5654 5781 95290895 95290766 8.530000e-19 106.0
47 TraesCS5D01G308800 chr6D 100.000 31 0 0 5878 5908 115041383 115041413 2.420000e-04 58.4
48 TraesCS5D01G308800 chr3B 75.172 145 30 5 5660 5798 781474799 781474655 5.210000e-06 63.9
49 TraesCS5D01G308800 chr3B 97.368 38 0 1 5654 5690 801232755 801232792 5.210000e-06 63.9
50 TraesCS5D01G308800 chr3B 92.500 40 3 0 6182 6221 555075546 555075585 2.420000e-04 58.4
51 TraesCS5D01G308800 chr6B 94.737 38 2 0 5880 5917 468731142 468731105 6.740000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G308800 chr5D 406163673 406169897 6224 True 5413.000000 9675 100.000000 1 6225 2 chr5D.!!$R1 6224
1 TraesCS5D01G308800 chr5B 486731227 486736123 4896 True 1499.400000 3552 95.411000 987 5849 5 chr5B.!!$R2 4862
2 TraesCS5D01G308800 chr5A 511876126 511883620 7494 True 780.363636 3360 94.689364 46 5940 11 chr5A.!!$R1 5894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 375 0.034477 CCCAAAATCTGCCCGGTAGT 60.034 55.000 0.00 0.00 0.00 2.73 F
393 406 0.455815 GGCTTTTTCTGTATGGGCGG 59.544 55.000 0.00 0.00 0.00 6.13 F
1955 3308 0.384309 TTATGTAGCGCGGAGTCTGG 59.616 55.000 8.83 0.00 0.00 3.86 F
3149 5047 2.221169 TCAAGTGTGAACATCCAGTGC 58.779 47.619 0.00 0.00 0.00 4.40 F
3281 5179 1.064654 GCTTGTGGATCATCGAAAGCC 59.935 52.381 3.38 1.21 35.19 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 3299 1.275291 ACCACATTACACCAGACTCCG 59.725 52.381 0.00 0.00 0.00 4.63 R
2012 3365 1.666888 CGCAAGTGCAACCAGAATTCC 60.667 52.381 0.65 0.00 42.21 3.01 R
3261 5159 1.064654 GGCTTTCGATGATCCACAAGC 59.935 52.381 5.79 5.79 0.00 4.01 R
4700 6684 1.199789 GCAGATTTTGTCGATGTGGCA 59.800 47.619 0.00 0.00 0.00 4.92 R
5265 7249 0.169009 GACAACTGCAGCGGAAATCC 59.831 55.000 15.27 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.328382 AATTGAACCGAGTGATCCGAA 57.672 42.857 0.00 0.00 0.00 4.30
21 22 2.823924 TTGAACCGAGTGATCCGAAA 57.176 45.000 0.00 0.00 0.00 3.46
22 23 2.823924 TGAACCGAGTGATCCGAAAA 57.176 45.000 0.00 0.00 0.00 2.29
23 24 2.409975 TGAACCGAGTGATCCGAAAAC 58.590 47.619 0.00 0.00 0.00 2.43
24 25 2.036733 TGAACCGAGTGATCCGAAAACT 59.963 45.455 0.00 0.00 0.00 2.66
25 26 2.080286 ACCGAGTGATCCGAAAACTG 57.920 50.000 0.00 0.00 0.00 3.16
26 27 1.337823 ACCGAGTGATCCGAAAACTGG 60.338 52.381 0.00 0.00 0.00 4.00
27 28 0.721718 CGAGTGATCCGAAAACTGGC 59.278 55.000 0.00 0.00 0.00 4.85
28 29 0.721718 GAGTGATCCGAAAACTGGCG 59.278 55.000 0.00 0.00 0.00 5.69
29 30 0.034896 AGTGATCCGAAAACTGGCGT 59.965 50.000 0.00 0.00 0.00 5.68
30 31 0.165944 GTGATCCGAAAACTGGCGTG 59.834 55.000 0.00 0.00 0.00 5.34
31 32 0.953471 TGATCCGAAAACTGGCGTGG 60.953 55.000 0.00 0.00 0.00 4.94
32 33 0.672401 GATCCGAAAACTGGCGTGGA 60.672 55.000 0.00 0.00 0.00 4.02
33 34 0.035439 ATCCGAAAACTGGCGTGGAT 60.035 50.000 0.00 0.00 0.00 3.41
34 35 0.953471 TCCGAAAACTGGCGTGGATG 60.953 55.000 0.00 0.00 0.00 3.51
35 36 1.154225 CGAAAACTGGCGTGGATGC 60.154 57.895 0.00 0.00 0.00 3.91
36 37 1.577328 CGAAAACTGGCGTGGATGCT 61.577 55.000 0.00 0.00 34.52 3.79
37 38 1.448985 GAAAACTGGCGTGGATGCTA 58.551 50.000 0.00 0.00 34.52 3.49
39 40 1.026718 AAACTGGCGTGGATGCTAGC 61.027 55.000 8.10 8.10 46.29 3.42
40 41 2.876368 AACTGGCGTGGATGCTAGCC 62.876 60.000 13.29 14.53 46.29 3.93
42 43 4.530857 GGCGTGGATGCTAGCCGT 62.531 66.667 13.29 0.00 40.17 5.68
43 44 2.962253 GCGTGGATGCTAGCCGTC 60.962 66.667 13.29 10.38 0.00 4.79
44 45 2.655364 CGTGGATGCTAGCCGTCG 60.655 66.667 13.29 6.40 0.00 5.12
50 51 3.411418 ATGCTAGCCGTCGACACCG 62.411 63.158 17.16 1.07 37.07 4.94
91 92 1.537776 CGGCTGCATTCCAAACAAACA 60.538 47.619 0.50 0.00 0.00 2.83
107 108 2.855963 CAAACACAACGTGTCGACTACT 59.144 45.455 17.92 0.00 46.79 2.57
108 109 2.115348 ACACAACGTGTCGACTACTG 57.885 50.000 17.92 10.95 43.92 2.74
109 110 1.672363 ACACAACGTGTCGACTACTGA 59.328 47.619 17.92 0.00 43.92 3.41
111 112 3.243301 ACACAACGTGTCGACTACTGAAT 60.243 43.478 17.92 0.00 43.92 2.57
112 113 3.361053 CACAACGTGTCGACTACTGAATC 59.639 47.826 17.92 0.00 0.00 2.52
113 114 3.004002 ACAACGTGTCGACTACTGAATCA 59.996 43.478 17.92 0.00 0.00 2.57
114 115 4.166523 CAACGTGTCGACTACTGAATCAT 58.833 43.478 17.92 0.00 0.00 2.45
115 116 4.436242 ACGTGTCGACTACTGAATCATT 57.564 40.909 17.92 0.00 0.00 2.57
124 137 5.689514 CGACTACTGAATCATTCATCACTCC 59.310 44.000 0.00 0.00 39.30 3.85
149 162 3.005367 CGTTAAATGCCAGACTTGGGTTT 59.995 43.478 0.00 0.00 45.16 3.27
162 175 1.219646 TGGGTTTTACGTCGCACTTC 58.780 50.000 0.00 0.00 0.00 3.01
196 209 4.276183 GCTCAGTCATCAATCAATCATGCT 59.724 41.667 0.00 0.00 0.00 3.79
202 215 5.049612 GTCATCAATCAATCATGCTCGATGT 60.050 40.000 0.00 0.00 33.29 3.06
206 219 2.463876 TCAATCATGCTCGATGTCGAC 58.536 47.619 9.11 9.11 44.22 4.20
228 241 2.324330 TGCGATGCACCACCGAAAG 61.324 57.895 0.00 0.00 31.71 2.62
238 251 2.554032 CACCACCGAAAGAGAAAGCATT 59.446 45.455 0.00 0.00 0.00 3.56
239 252 2.814336 ACCACCGAAAGAGAAAGCATTC 59.186 45.455 0.00 0.00 35.70 2.67
242 255 2.165282 CGAAAGAGAAAGCATTCGGC 57.835 50.000 0.00 0.00 40.55 5.54
292 305 1.194547 GTGGTGTGCACGTTCTGTATG 59.805 52.381 13.13 0.00 0.00 2.39
293 306 0.796312 GGTGTGCACGTTCTGTATGG 59.204 55.000 13.13 0.00 0.00 2.74
294 307 0.796312 GTGTGCACGTTCTGTATGGG 59.204 55.000 13.13 0.00 0.00 4.00
295 308 0.953471 TGTGCACGTTCTGTATGGGC 60.953 55.000 13.13 0.00 42.82 5.36
296 309 1.739929 TGCACGTTCTGTATGGGCG 60.740 57.895 0.00 0.00 45.61 6.13
297 310 1.447140 GCACGTTCTGTATGGGCGA 60.447 57.895 0.00 0.00 31.29 5.54
298 311 0.810031 GCACGTTCTGTATGGGCGAT 60.810 55.000 0.00 0.00 31.29 4.58
299 312 1.537348 GCACGTTCTGTATGGGCGATA 60.537 52.381 0.00 0.00 31.29 2.92
300 313 2.816689 CACGTTCTGTATGGGCGATAA 58.183 47.619 0.00 0.00 0.00 1.75
301 314 2.538449 CACGTTCTGTATGGGCGATAAC 59.462 50.000 0.00 0.00 0.00 1.89
302 315 1.784856 CGTTCTGTATGGGCGATAACG 59.215 52.381 1.82 1.82 42.93 3.18
303 316 2.542205 CGTTCTGTATGGGCGATAACGA 60.542 50.000 8.89 0.00 40.29 3.85
304 317 3.650139 GTTCTGTATGGGCGATAACGAT 58.350 45.455 0.00 0.00 42.66 3.73
305 318 3.297830 TCTGTATGGGCGATAACGATG 57.702 47.619 0.00 0.00 42.66 3.84
306 319 2.029380 TCTGTATGGGCGATAACGATGG 60.029 50.000 0.00 0.00 42.66 3.51
307 320 1.964933 TGTATGGGCGATAACGATGGA 59.035 47.619 0.00 0.00 42.66 3.41
308 321 2.365941 TGTATGGGCGATAACGATGGAA 59.634 45.455 0.00 0.00 42.66 3.53
309 322 2.631160 ATGGGCGATAACGATGGAAA 57.369 45.000 0.00 0.00 42.66 3.13
310 323 2.404923 TGGGCGATAACGATGGAAAA 57.595 45.000 0.00 0.00 42.66 2.29
311 324 2.925724 TGGGCGATAACGATGGAAAAT 58.074 42.857 0.00 0.00 42.66 1.82
312 325 2.616376 TGGGCGATAACGATGGAAAATG 59.384 45.455 0.00 0.00 42.66 2.32
313 326 2.875933 GGGCGATAACGATGGAAAATGA 59.124 45.455 0.00 0.00 42.66 2.57
314 327 3.058914 GGGCGATAACGATGGAAAATGAG 60.059 47.826 0.00 0.00 42.66 2.90
315 328 3.545633 GCGATAACGATGGAAAATGAGC 58.454 45.455 0.00 0.00 42.66 4.26
316 329 3.607078 GCGATAACGATGGAAAATGAGCC 60.607 47.826 0.00 0.00 42.66 4.70
317 330 3.809832 CGATAACGATGGAAAATGAGCCT 59.190 43.478 0.00 0.00 42.66 4.58
318 331 4.084328 CGATAACGATGGAAAATGAGCCTC 60.084 45.833 0.00 0.00 42.66 4.70
319 332 1.656652 ACGATGGAAAATGAGCCTCG 58.343 50.000 0.00 0.00 33.82 4.63
320 333 0.305922 CGATGGAAAATGAGCCTCGC 59.694 55.000 0.00 0.00 0.00 5.03
321 334 0.665298 GATGGAAAATGAGCCTCGCC 59.335 55.000 0.00 0.00 0.00 5.54
322 335 0.257039 ATGGAAAATGAGCCTCGCCT 59.743 50.000 0.00 0.00 0.00 5.52
323 336 0.392998 TGGAAAATGAGCCTCGCCTC 60.393 55.000 0.00 0.00 0.00 4.70
324 337 0.392998 GGAAAATGAGCCTCGCCTCA 60.393 55.000 3.37 3.37 45.16 3.86
325 338 1.012841 GAAAATGAGCCTCGCCTCAG 58.987 55.000 6.46 0.00 44.37 3.35
326 339 0.326264 AAAATGAGCCTCGCCTCAGT 59.674 50.000 6.46 1.75 44.37 3.41
327 340 1.195115 AAATGAGCCTCGCCTCAGTA 58.805 50.000 6.46 0.00 44.37 2.74
328 341 1.418334 AATGAGCCTCGCCTCAGTAT 58.582 50.000 6.46 0.00 44.37 2.12
329 342 2.294449 ATGAGCCTCGCCTCAGTATA 57.706 50.000 6.46 0.00 44.37 1.47
330 343 1.319541 TGAGCCTCGCCTCAGTATAC 58.680 55.000 0.00 0.00 36.96 1.47
331 344 1.133761 TGAGCCTCGCCTCAGTATACT 60.134 52.381 0.00 0.00 36.96 2.12
332 345 2.105993 TGAGCCTCGCCTCAGTATACTA 59.894 50.000 4.74 0.00 36.96 1.82
333 346 2.485038 GAGCCTCGCCTCAGTATACTAC 59.515 54.545 4.74 0.00 0.00 2.73
334 347 2.106857 AGCCTCGCCTCAGTATACTACT 59.893 50.000 4.74 0.00 40.28 2.57
335 348 2.485038 GCCTCGCCTCAGTATACTACTC 59.515 54.545 4.74 0.00 36.76 2.59
336 349 3.075884 CCTCGCCTCAGTATACTACTCC 58.924 54.545 4.74 0.00 36.76 3.85
337 350 3.244630 CCTCGCCTCAGTATACTACTCCT 60.245 52.174 4.74 0.00 36.76 3.69
338 351 4.391155 CTCGCCTCAGTATACTACTCCTT 58.609 47.826 4.74 0.00 36.76 3.36
339 352 4.387598 TCGCCTCAGTATACTACTCCTTC 58.612 47.826 4.74 0.00 36.76 3.46
340 353 4.135306 CGCCTCAGTATACTACTCCTTCA 58.865 47.826 4.74 0.00 36.76 3.02
341 354 4.023878 CGCCTCAGTATACTACTCCTTCAC 60.024 50.000 4.74 0.00 36.76 3.18
342 355 4.023878 GCCTCAGTATACTACTCCTTCACG 60.024 50.000 4.74 0.00 36.76 4.35
343 356 4.023878 CCTCAGTATACTACTCCTTCACGC 60.024 50.000 4.74 0.00 36.76 5.34
344 357 3.881688 TCAGTATACTACTCCTTCACGCC 59.118 47.826 4.74 0.00 36.76 5.68
345 358 3.004524 CAGTATACTACTCCTTCACGCCC 59.995 52.174 4.74 0.00 36.76 6.13
346 359 2.154567 ATACTACTCCTTCACGCCCA 57.845 50.000 0.00 0.00 0.00 5.36
347 360 1.927487 TACTACTCCTTCACGCCCAA 58.073 50.000 0.00 0.00 0.00 4.12
348 361 1.053424 ACTACTCCTTCACGCCCAAA 58.947 50.000 0.00 0.00 0.00 3.28
349 362 1.418637 ACTACTCCTTCACGCCCAAAA 59.581 47.619 0.00 0.00 0.00 2.44
350 363 2.039879 ACTACTCCTTCACGCCCAAAAT 59.960 45.455 0.00 0.00 0.00 1.82
351 364 1.534729 ACTCCTTCACGCCCAAAATC 58.465 50.000 0.00 0.00 0.00 2.17
352 365 1.073923 ACTCCTTCACGCCCAAAATCT 59.926 47.619 0.00 0.00 0.00 2.40
353 366 1.470098 CTCCTTCACGCCCAAAATCTG 59.530 52.381 0.00 0.00 0.00 2.90
354 367 0.109132 CCTTCACGCCCAAAATCTGC 60.109 55.000 0.00 0.00 0.00 4.26
355 368 0.109132 CTTCACGCCCAAAATCTGCC 60.109 55.000 0.00 0.00 0.00 4.85
356 369 1.531739 TTCACGCCCAAAATCTGCCC 61.532 55.000 0.00 0.00 0.00 5.36
357 370 3.061848 ACGCCCAAAATCTGCCCG 61.062 61.111 0.00 0.00 0.00 6.13
358 371 3.825611 CGCCCAAAATCTGCCCGG 61.826 66.667 0.00 0.00 0.00 5.73
359 372 2.679996 GCCCAAAATCTGCCCGGT 60.680 61.111 0.00 0.00 0.00 5.28
360 373 1.379309 GCCCAAAATCTGCCCGGTA 60.379 57.895 0.00 0.00 0.00 4.02
361 374 1.384222 GCCCAAAATCTGCCCGGTAG 61.384 60.000 0.00 0.00 0.00 3.18
362 375 0.034477 CCCAAAATCTGCCCGGTAGT 60.034 55.000 0.00 0.00 0.00 2.73
363 376 1.210967 CCCAAAATCTGCCCGGTAGTA 59.789 52.381 0.00 0.00 0.00 1.82
364 377 2.561569 CCAAAATCTGCCCGGTAGTAG 58.438 52.381 0.00 0.00 0.00 2.57
365 378 2.093128 CCAAAATCTGCCCGGTAGTAGT 60.093 50.000 0.00 0.00 0.00 2.73
366 379 3.133362 CCAAAATCTGCCCGGTAGTAGTA 59.867 47.826 0.00 0.00 0.00 1.82
367 380 4.383335 CCAAAATCTGCCCGGTAGTAGTAA 60.383 45.833 0.00 0.00 0.00 2.24
368 381 5.365619 CAAAATCTGCCCGGTAGTAGTAAT 58.634 41.667 0.00 0.00 0.00 1.89
369 382 6.463331 CCAAAATCTGCCCGGTAGTAGTAATA 60.463 42.308 0.00 0.00 0.00 0.98
370 383 5.718724 AATCTGCCCGGTAGTAGTAATAC 57.281 43.478 0.00 0.00 0.00 1.89
371 384 4.443978 TCTGCCCGGTAGTAGTAATACT 57.556 45.455 8.10 8.10 0.00 2.12
372 385 4.139786 TCTGCCCGGTAGTAGTAATACTG 58.860 47.826 12.98 9.22 0.00 2.74
373 386 4.139786 CTGCCCGGTAGTAGTAATACTGA 58.860 47.826 16.36 0.00 32.25 3.41
374 387 4.139786 TGCCCGGTAGTAGTAATACTGAG 58.860 47.826 16.36 6.03 32.25 3.35
375 388 3.505293 GCCCGGTAGTAGTAATACTGAGG 59.495 52.174 16.36 15.41 32.25 3.86
376 389 3.505293 CCCGGTAGTAGTAATACTGAGGC 59.495 52.174 16.36 1.26 32.25 4.70
377 390 4.396522 CCGGTAGTAGTAATACTGAGGCT 58.603 47.826 16.36 0.00 32.25 4.58
378 391 4.826183 CCGGTAGTAGTAATACTGAGGCTT 59.174 45.833 16.36 0.00 32.25 4.35
379 392 5.301298 CCGGTAGTAGTAATACTGAGGCTTT 59.699 44.000 16.36 0.00 32.25 3.51
380 393 6.183360 CCGGTAGTAGTAATACTGAGGCTTTT 60.183 42.308 16.36 0.00 32.25 2.27
393 406 0.455815 GGCTTTTTCTGTATGGGCGG 59.544 55.000 0.00 0.00 0.00 6.13
396 409 0.885196 TTTTTCTGTATGGGCGGCAC 59.115 50.000 12.47 0.00 0.00 5.01
434 447 1.140052 TCCTTCCTGCACGAGTTTGAA 59.860 47.619 0.00 0.00 0.00 2.69
435 448 2.154462 CCTTCCTGCACGAGTTTGAAT 58.846 47.619 0.00 0.00 0.00 2.57
436 449 2.095567 CCTTCCTGCACGAGTTTGAATG 60.096 50.000 0.00 0.00 0.00 2.67
437 450 1.522668 TCCTGCACGAGTTTGAATGG 58.477 50.000 0.00 0.00 0.00 3.16
440 453 2.293122 CCTGCACGAGTTTGAATGGAAA 59.707 45.455 0.00 0.00 0.00 3.13
441 454 3.243367 CCTGCACGAGTTTGAATGGAAAA 60.243 43.478 0.00 0.00 0.00 2.29
442 455 4.549458 CTGCACGAGTTTGAATGGAAAAT 58.451 39.130 0.00 0.00 0.00 1.82
443 456 4.545610 TGCACGAGTTTGAATGGAAAATC 58.454 39.130 0.00 0.00 0.00 2.17
444 457 4.278170 TGCACGAGTTTGAATGGAAAATCT 59.722 37.500 0.00 0.00 29.69 2.40
445 458 5.221224 TGCACGAGTTTGAATGGAAAATCTT 60.221 36.000 0.00 0.00 29.69 2.40
446 459 5.117592 GCACGAGTTTGAATGGAAAATCTTG 59.882 40.000 0.00 0.00 34.27 3.02
447 460 6.437928 CACGAGTTTGAATGGAAAATCTTGA 58.562 36.000 0.00 0.00 33.46 3.02
448 461 6.917477 CACGAGTTTGAATGGAAAATCTTGAA 59.083 34.615 0.00 0.00 33.46 2.69
449 462 7.434897 CACGAGTTTGAATGGAAAATCTTGAAA 59.565 33.333 0.00 0.00 33.46 2.69
454 467 6.155475 TGAATGGAAAATCTTGAAAACGGT 57.845 33.333 0.00 0.00 0.00 4.83
480 493 1.225376 TTAACCGCAACAGCACTCGG 61.225 55.000 0.00 0.00 46.61 4.63
501 1850 2.399611 CGCGGCCGAAATTCACTC 59.600 61.111 33.48 6.41 36.29 3.51
502 1851 2.791927 GCGGCCGAAATTCACTCC 59.208 61.111 33.48 2.06 0.00 3.85
549 1898 1.589803 AAACAAAACCCCTCGTCTCG 58.410 50.000 0.00 0.00 0.00 4.04
604 1953 2.237965 CCACCATTCCCCCACTCCA 61.238 63.158 0.00 0.00 0.00 3.86
606 1955 2.238701 ACCATTCCCCCACTCCACC 61.239 63.158 0.00 0.00 0.00 4.61
1808 3160 1.211190 CGAAGCTGCCTTTTGCTCC 59.789 57.895 0.00 0.00 42.00 4.70
1867 3219 8.853077 AAGAGTCTATTTTCATGTTGATGTGA 57.147 30.769 0.00 0.00 0.00 3.58
1868 3220 8.261492 AGAGTCTATTTTCATGTTGATGTGAC 57.739 34.615 0.00 0.00 0.00 3.67
1869 3221 8.099537 AGAGTCTATTTTCATGTTGATGTGACT 58.900 33.333 0.00 0.00 33.38 3.41
1870 3222 9.371136 GAGTCTATTTTCATGTTGATGTGACTA 57.629 33.333 0.00 0.00 31.27 2.59
1871 3223 9.155975 AGTCTATTTTCATGTTGATGTGACTAC 57.844 33.333 0.00 0.00 0.00 2.73
1872 3224 9.155975 GTCTATTTTCATGTTGATGTGACTACT 57.844 33.333 0.00 0.00 0.00 2.57
1876 3228 8.902540 TTTTCATGTTGATGTGACTACTAAGT 57.097 30.769 0.00 0.00 39.21 2.24
1946 3299 1.597937 GCAATGCTGGTTATGTAGCGC 60.598 52.381 0.00 0.00 42.74 5.92
1955 3308 0.384309 TTATGTAGCGCGGAGTCTGG 59.616 55.000 8.83 0.00 0.00 3.86
1977 3330 5.885352 TGGTGTAATGTGGTGAATTATGGAG 59.115 40.000 0.00 0.00 0.00 3.86
2012 3365 4.460382 AGACCAGCCTTATTTTGACATGTG 59.540 41.667 1.15 0.00 0.00 3.21
2172 4010 5.342866 AGTAATATGGATGTACTCCCTCCC 58.657 45.833 8.36 0.00 44.23 4.30
2208 4046 9.866655 ATAAGCCATTTTAGAGATTCCAATACA 57.133 29.630 0.00 0.00 0.00 2.29
2314 4211 4.997395 TGAACCTAGTTTCTCATGCACTTC 59.003 41.667 1.45 0.00 0.00 3.01
2368 4265 6.203808 TCATTCAAGCATTCATCTCCTTTG 57.796 37.500 0.00 0.00 0.00 2.77
2391 4288 5.590259 TGAGCTTACAAAGTCTTGCTTCTTT 59.410 36.000 0.00 0.00 36.17 2.52
2886 4784 7.447545 CCAGTTCTCCAATATGATTCATCACAT 59.552 37.037 1.55 0.00 40.03 3.21
3149 5047 2.221169 TCAAGTGTGAACATCCAGTGC 58.779 47.619 0.00 0.00 0.00 4.40
3261 5159 6.494666 TGGGTATATCTAGGAAACAAGGTG 57.505 41.667 0.00 0.00 0.00 4.00
3281 5179 1.064654 GCTTGTGGATCATCGAAAGCC 59.935 52.381 3.38 1.21 35.19 4.35
3369 5267 6.703607 CGCTTCTACTGAATGGAATGAACTAT 59.296 38.462 0.00 0.00 0.00 2.12
3891 5800 6.817140 GGTATGGTTTTACAGTAGAGAAGGTG 59.183 42.308 0.00 0.00 0.00 4.00
4304 6288 1.453155 AAGCCACGCTCTATGGTTTG 58.547 50.000 0.00 0.00 39.00 2.93
4334 6318 5.880901 ACACCTTGGTTTCTGTTGAGATAT 58.119 37.500 0.00 0.00 0.00 1.63
4335 6319 7.016153 ACACCTTGGTTTCTGTTGAGATATA 57.984 36.000 0.00 0.00 0.00 0.86
4336 6320 6.879458 ACACCTTGGTTTCTGTTGAGATATAC 59.121 38.462 0.00 0.00 0.00 1.47
4337 6321 7.106239 CACCTTGGTTTCTGTTGAGATATACT 58.894 38.462 0.00 0.00 0.00 2.12
4338 6322 7.278868 CACCTTGGTTTCTGTTGAGATATACTC 59.721 40.741 0.00 0.00 45.11 2.59
4339 6323 6.763610 CCTTGGTTTCTGTTGAGATATACTCC 59.236 42.308 0.00 0.00 44.34 3.85
4340 6324 6.235231 TGGTTTCTGTTGAGATATACTCCC 57.765 41.667 0.00 0.00 44.34 4.30
4341 6325 5.964477 TGGTTTCTGTTGAGATATACTCCCT 59.036 40.000 0.00 0.00 44.34 4.20
4342 6326 6.098409 TGGTTTCTGTTGAGATATACTCCCTC 59.902 42.308 0.00 0.00 44.34 4.30
4343 6327 6.463190 GGTTTCTGTTGAGATATACTCCCTCC 60.463 46.154 0.00 0.00 44.34 4.30
4344 6328 4.399219 TCTGTTGAGATATACTCCCTCCG 58.601 47.826 0.00 0.00 44.34 4.63
4345 6329 4.141228 TCTGTTGAGATATACTCCCTCCGT 60.141 45.833 0.00 0.00 44.34 4.69
4346 6330 4.543689 TGTTGAGATATACTCCCTCCGTT 58.456 43.478 0.00 0.00 44.34 4.44
4347 6331 4.583489 TGTTGAGATATACTCCCTCCGTTC 59.417 45.833 0.00 0.00 44.34 3.95
4348 6332 3.764218 TGAGATATACTCCCTCCGTTCC 58.236 50.000 0.00 0.00 44.34 3.62
4349 6333 3.139584 TGAGATATACTCCCTCCGTTCCA 59.860 47.826 0.00 0.00 44.34 3.53
4350 6334 4.150359 GAGATATACTCCCTCCGTTCCAA 58.850 47.826 0.00 0.00 39.53 3.53
4351 6335 4.553678 AGATATACTCCCTCCGTTCCAAA 58.446 43.478 0.00 0.00 0.00 3.28
4352 6336 4.966805 AGATATACTCCCTCCGTTCCAAAA 59.033 41.667 0.00 0.00 0.00 2.44
4353 6337 5.607171 AGATATACTCCCTCCGTTCCAAAAT 59.393 40.000 0.00 0.00 0.00 1.82
4354 6338 6.785963 AGATATACTCCCTCCGTTCCAAAATA 59.214 38.462 0.00 0.00 0.00 1.40
4355 6339 5.703730 ATACTCCCTCCGTTCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
4356 6340 3.951663 ACTCCCTCCGTTCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
4357 6341 3.329814 ACTCCCTCCGTTCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
4358 6342 3.681593 TCCCTCCGTTCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
4359 6343 3.073356 TCCCTCCGTTCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
4360 6344 3.439129 CCCTCCGTTCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
4361 6345 4.069304 CCTCCGTTCCAAAATAAGTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
4362 6346 4.517453 CCTCCGTTCCAAAATAAGTGTCAA 59.483 41.667 0.00 0.00 0.00 3.18
4363 6347 5.334879 CCTCCGTTCCAAAATAAGTGTCAAG 60.335 44.000 0.00 0.00 0.00 3.02
4364 6348 4.023536 TCCGTTCCAAAATAAGTGTCAAGC 60.024 41.667 0.00 0.00 0.00 4.01
4365 6349 4.023193 CCGTTCCAAAATAAGTGTCAAGCT 60.023 41.667 0.00 0.00 0.00 3.74
4366 6350 5.507315 CCGTTCCAAAATAAGTGTCAAGCTT 60.507 40.000 0.00 0.00 0.00 3.74
4367 6351 6.293735 CCGTTCCAAAATAAGTGTCAAGCTTA 60.294 38.462 0.00 0.00 33.59 3.09
4368 6352 6.797033 CGTTCCAAAATAAGTGTCAAGCTTAG 59.203 38.462 0.00 0.00 32.72 2.18
4369 6353 7.519970 CGTTCCAAAATAAGTGTCAAGCTTAGT 60.520 37.037 0.00 0.00 32.72 2.24
4370 6354 8.780249 GTTCCAAAATAAGTGTCAAGCTTAGTA 58.220 33.333 0.00 0.00 32.72 1.82
4371 6355 8.319143 TCCAAAATAAGTGTCAAGCTTAGTAC 57.681 34.615 0.00 0.00 32.72 2.73
4372 6356 7.934665 TCCAAAATAAGTGTCAAGCTTAGTACA 59.065 33.333 0.00 1.16 32.72 2.90
4373 6357 8.564574 CCAAAATAAGTGTCAAGCTTAGTACAA 58.435 33.333 0.00 0.00 32.72 2.41
4374 6358 9.382244 CAAAATAAGTGTCAAGCTTAGTACAAC 57.618 33.333 0.00 0.43 32.72 3.32
4375 6359 8.904099 AAATAAGTGTCAAGCTTAGTACAACT 57.096 30.769 0.00 2.57 32.72 3.16
4376 6360 8.904099 AATAAGTGTCAAGCTTAGTACAACTT 57.096 30.769 0.00 11.85 32.72 2.66
4377 6361 8.904099 ATAAGTGTCAAGCTTAGTACAACTTT 57.096 30.769 17.86 12.50 32.72 2.66
4378 6362 6.604735 AGTGTCAAGCTTAGTACAACTTTG 57.395 37.500 0.00 0.00 0.00 2.77
4379 6363 6.113411 AGTGTCAAGCTTAGTACAACTTTGT 58.887 36.000 0.00 0.00 44.86 2.83
4380 6364 7.270047 AGTGTCAAGCTTAGTACAACTTTGTA 58.730 34.615 0.00 0.00 42.35 2.41
4419 6403 9.329913 CAAATTTGAGACACTTATTTTAGGACG 57.670 33.333 13.08 0.00 0.00 4.79
4420 6404 7.611213 ATTTGAGACACTTATTTTAGGACGG 57.389 36.000 0.00 0.00 0.00 4.79
4421 6405 5.988310 TGAGACACTTATTTTAGGACGGA 57.012 39.130 0.00 0.00 0.00 4.69
4422 6406 5.962433 TGAGACACTTATTTTAGGACGGAG 58.038 41.667 0.00 0.00 0.00 4.63
4423 6407 5.105473 TGAGACACTTATTTTAGGACGGAGG 60.105 44.000 0.00 0.00 0.00 4.30
4424 6408 4.161754 AGACACTTATTTTAGGACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4425 6409 4.098894 ACACTTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4426 6410 4.161754 ACACTTATTTTAGGACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4533 6517 9.606631 ACTGAATAACTCTGTATTTCCTCATTC 57.393 33.333 0.00 0.00 34.68 2.67
4550 6534 6.219417 CTCATTCTGAGGTTGACATAGTCT 57.781 41.667 0.00 0.00 40.71 3.24
4598 6582 2.358898 GTGCATGAAGTTGTTCTGTGGT 59.641 45.455 0.00 0.00 33.38 4.16
4786 6770 5.334646 CCACCTAGCTTTTACTCGAAAAACC 60.335 44.000 0.00 0.00 36.59 3.27
4820 6804 1.743995 GAGCGGTACAATTGCGGGT 60.744 57.895 5.05 0.15 0.00 5.28
4835 6819 3.275143 TGCGGGTAATTCATGTTACAGG 58.725 45.455 8.10 0.00 36.51 4.00
4847 6831 2.905075 TGTTACAGGCGATTGATCCAG 58.095 47.619 0.00 0.00 0.00 3.86
4898 6882 4.731773 GCTTCCTTGTTCTGTGTCAAAGTG 60.732 45.833 0.00 0.00 0.00 3.16
4964 6948 4.593597 TTATCTTTTGCCGCTTCTTACG 57.406 40.909 0.00 0.00 0.00 3.18
4978 6962 6.952083 CCGCTTCTTACGTTGTTCTATTTTAC 59.048 38.462 0.00 0.00 0.00 2.01
5109 7093 3.434984 GCTTTAGTAGCTATGGCATCTGC 59.565 47.826 1.65 10.34 46.77 4.26
5140 7124 2.884320 TGCCTAGTGGACAGAGTTGTA 58.116 47.619 0.00 0.00 37.76 2.41
5201 7185 6.153212 CGAAGGCATCGTATATTTTACAGG 57.847 41.667 3.61 0.00 46.52 4.00
5233 7217 3.745975 CCATGACTCTTTGACGCTTTGTA 59.254 43.478 0.00 0.00 0.00 2.41
5265 7249 2.938451 TGCTCAGTTCACACACTTTCTG 59.062 45.455 0.00 0.00 0.00 3.02
5272 7256 4.580580 AGTTCACACACTTTCTGGATTTCC 59.419 41.667 0.00 0.00 0.00 3.13
5316 7300 3.261580 TGTCACTGTGTTCTTGTCTGTG 58.738 45.455 7.79 0.00 34.16 3.66
5485 7469 6.545666 TGGAACATTTTGTCAATCTGTGTAGT 59.454 34.615 2.33 0.00 0.00 2.73
5546 7530 6.340962 TGCTTAGTTGTAGCTTCTTACTCA 57.659 37.500 0.00 0.00 39.38 3.41
5628 7612 2.469826 CTTGAAGTGTGTCGCTGTACA 58.530 47.619 0.00 0.00 0.00 2.90
5641 7625 2.152016 GCTGTACAGGAAAACTCACCC 58.848 52.381 23.95 0.00 0.00 4.61
5652 7640 0.313043 AACTCACCCGTGTACACTCG 59.687 55.000 23.01 14.71 0.00 4.18
5686 7674 6.962686 TGATTCATAGGATTCTCAAAATGCG 58.037 36.000 1.52 0.00 0.00 4.73
5693 7681 6.773976 AGGATTCTCAAAATGCGGAAATAA 57.226 33.333 0.00 0.00 0.00 1.40
5721 7711 3.452755 CACGAATAGTGTCATGCCCTA 57.547 47.619 0.00 0.00 45.51 3.53
5728 7718 1.283029 AGTGTCATGCCCTATTGCACT 59.717 47.619 0.00 0.00 45.48 4.40
5762 7752 4.040339 TGGAAGAGTGTTTGATAGCACAGA 59.960 41.667 0.00 0.00 38.02 3.41
5788 7780 8.528044 AAACAAAGGAATCTAACAAACAGGTA 57.472 30.769 0.00 0.00 0.00 3.08
5790 7782 8.336801 ACAAAGGAATCTAACAAACAGGTATC 57.663 34.615 0.00 0.00 0.00 2.24
5849 8143 9.787532 ATTTAAATACTGTGAATCAAATGACCG 57.212 29.630 0.00 0.00 0.00 4.79
5858 8187 2.198827 TCAAATGACCGATGCAGGTT 57.801 45.000 0.00 0.00 46.09 3.50
5928 8257 1.637553 ACTCTCAAATGTGCCTCCCAT 59.362 47.619 0.00 0.00 0.00 4.00
5932 8261 4.671831 TCTCAAATGTGCCTCCCATAAAA 58.328 39.130 0.00 0.00 0.00 1.52
5933 8262 4.706476 TCTCAAATGTGCCTCCCATAAAAG 59.294 41.667 0.00 0.00 0.00 2.27
5934 8263 3.195396 TCAAATGTGCCTCCCATAAAAGC 59.805 43.478 0.00 0.00 0.00 3.51
5935 8264 2.530460 ATGTGCCTCCCATAAAAGCA 57.470 45.000 0.00 0.00 0.00 3.91
5938 8267 2.025037 TGTGCCTCCCATAAAAGCATCT 60.025 45.455 0.00 0.00 35.62 2.90
5939 8268 2.620585 GTGCCTCCCATAAAAGCATCTC 59.379 50.000 0.00 0.00 35.62 2.75
5940 8269 2.511218 TGCCTCCCATAAAAGCATCTCT 59.489 45.455 0.00 0.00 0.00 3.10
5941 8270 3.716353 TGCCTCCCATAAAAGCATCTCTA 59.284 43.478 0.00 0.00 0.00 2.43
5942 8271 4.202398 TGCCTCCCATAAAAGCATCTCTAG 60.202 45.833 0.00 0.00 0.00 2.43
5943 8272 4.322567 CCTCCCATAAAAGCATCTCTAGC 58.677 47.826 0.00 0.00 0.00 3.42
5944 8273 4.202398 CCTCCCATAAAAGCATCTCTAGCA 60.202 45.833 0.00 0.00 0.00 3.49
5945 8274 4.965814 TCCCATAAAAGCATCTCTAGCAG 58.034 43.478 0.00 0.00 0.00 4.24
5946 8275 4.655649 TCCCATAAAAGCATCTCTAGCAGA 59.344 41.667 0.00 0.00 34.78 4.26
5947 8276 4.754114 CCCATAAAAGCATCTCTAGCAGAC 59.246 45.833 0.00 0.00 32.26 3.51
5948 8277 4.754114 CCATAAAAGCATCTCTAGCAGACC 59.246 45.833 0.00 0.00 32.26 3.85
5949 8278 2.998316 AAAGCATCTCTAGCAGACCC 57.002 50.000 0.00 0.00 32.26 4.46
5950 8279 1.127343 AAGCATCTCTAGCAGACCCC 58.873 55.000 0.00 0.00 32.26 4.95
5951 8280 1.112315 AGCATCTCTAGCAGACCCCG 61.112 60.000 0.00 0.00 32.26 5.73
5952 8281 1.365633 CATCTCTAGCAGACCCCGC 59.634 63.158 0.00 0.00 32.26 6.13
5953 8282 1.075970 ATCTCTAGCAGACCCCGCA 60.076 57.895 0.00 0.00 32.26 5.69
5954 8283 0.470833 ATCTCTAGCAGACCCCGCAT 60.471 55.000 0.00 0.00 32.26 4.73
5955 8284 1.109920 TCTCTAGCAGACCCCGCATC 61.110 60.000 0.00 0.00 0.00 3.91
5956 8285 2.093537 CTCTAGCAGACCCCGCATCC 62.094 65.000 0.00 0.00 0.00 3.51
5957 8286 3.161450 TAGCAGACCCCGCATCCC 61.161 66.667 0.00 0.00 0.00 3.85
5975 8304 2.438795 GCCCCGACCCGCAAAATA 60.439 61.111 0.00 0.00 0.00 1.40
5976 8305 2.047443 GCCCCGACCCGCAAAATAA 61.047 57.895 0.00 0.00 0.00 1.40
5977 8306 1.804598 CCCCGACCCGCAAAATAAC 59.195 57.895 0.00 0.00 0.00 1.89
5978 8307 1.659622 CCCCGACCCGCAAAATAACC 61.660 60.000 0.00 0.00 0.00 2.85
5979 8308 1.426223 CCGACCCGCAAAATAACCG 59.574 57.895 0.00 0.00 0.00 4.44
5980 8309 1.226184 CGACCCGCAAAATAACCGC 60.226 57.895 0.00 0.00 0.00 5.68
5981 8310 1.641123 CGACCCGCAAAATAACCGCT 61.641 55.000 0.00 0.00 0.00 5.52
5982 8311 1.371595 GACCCGCAAAATAACCGCTA 58.628 50.000 0.00 0.00 0.00 4.26
5983 8312 1.738908 GACCCGCAAAATAACCGCTAA 59.261 47.619 0.00 0.00 0.00 3.09
5984 8313 2.161030 ACCCGCAAAATAACCGCTAAA 58.839 42.857 0.00 0.00 0.00 1.85
5985 8314 2.557490 ACCCGCAAAATAACCGCTAAAA 59.443 40.909 0.00 0.00 0.00 1.52
5986 8315 3.193903 ACCCGCAAAATAACCGCTAAAAT 59.806 39.130 0.00 0.00 0.00 1.82
5987 8316 4.398673 ACCCGCAAAATAACCGCTAAAATA 59.601 37.500 0.00 0.00 0.00 1.40
5988 8317 4.736307 CCCGCAAAATAACCGCTAAAATAC 59.264 41.667 0.00 0.00 0.00 1.89
5989 8318 4.435231 CCGCAAAATAACCGCTAAAATACG 59.565 41.667 0.00 0.00 0.00 3.06
5996 8325 0.925466 CCGCTAAAATACGGGTCACG 59.075 55.000 0.00 0.00 45.74 4.35
6006 8335 4.653888 GGGTCACGGGTTGGGGTG 62.654 72.222 0.00 0.00 35.50 4.61
6007 8336 4.653888 GGTCACGGGTTGGGGTGG 62.654 72.222 0.00 0.00 34.93 4.61
6008 8337 4.653888 GTCACGGGTTGGGGTGGG 62.654 72.222 0.00 0.00 34.93 4.61
6009 8338 4.902258 TCACGGGTTGGGGTGGGA 62.902 66.667 0.00 0.00 34.93 4.37
6010 8339 3.892162 CACGGGTTGGGGTGGGAA 61.892 66.667 0.00 0.00 0.00 3.97
6011 8340 3.104568 ACGGGTTGGGGTGGGAAA 61.105 61.111 0.00 0.00 0.00 3.13
6012 8341 2.198980 CGGGTTGGGGTGGGAAAA 59.801 61.111 0.00 0.00 0.00 2.29
6013 8342 2.204461 CGGGTTGGGGTGGGAAAAC 61.204 63.158 0.00 0.00 0.00 2.43
6014 8343 1.839747 GGGTTGGGGTGGGAAAACC 60.840 63.158 0.00 0.00 41.14 3.27
6015 8344 1.234820 GGTTGGGGTGGGAAAACCT 59.765 57.895 0.00 0.00 40.35 3.50
6016 8345 1.118965 GGTTGGGGTGGGAAAACCTG 61.119 60.000 0.00 0.00 40.35 4.00
6017 8346 1.458588 TTGGGGTGGGAAAACCTGC 60.459 57.895 0.00 0.00 40.35 4.85
6018 8347 2.603473 GGGGTGGGAAAACCTGCC 60.603 66.667 0.00 0.00 40.35 4.85
6019 8348 2.603473 GGGTGGGAAAACCTGCCC 60.603 66.667 0.00 0.00 44.00 5.36
6023 8352 3.920031 GGGAAAACCTGCCCGATC 58.080 61.111 0.00 0.00 34.00 3.69
6024 8353 1.001393 GGGAAAACCTGCCCGATCA 60.001 57.895 0.00 0.00 34.00 2.92
6025 8354 0.610785 GGGAAAACCTGCCCGATCAA 60.611 55.000 0.00 0.00 34.00 2.57
6026 8355 1.253100 GGAAAACCTGCCCGATCAAA 58.747 50.000 0.00 0.00 0.00 2.69
6027 8356 1.067846 GGAAAACCTGCCCGATCAAAC 60.068 52.381 0.00 0.00 0.00 2.93
6028 8357 1.611491 GAAAACCTGCCCGATCAAACA 59.389 47.619 0.00 0.00 0.00 2.83
6029 8358 0.958822 AAACCTGCCCGATCAAACAC 59.041 50.000 0.00 0.00 0.00 3.32
6030 8359 0.893727 AACCTGCCCGATCAAACACC 60.894 55.000 0.00 0.00 0.00 4.16
6031 8360 2.398554 CCTGCCCGATCAAACACCG 61.399 63.158 0.00 0.00 0.00 4.94
6032 8361 3.039202 CTGCCCGATCAAACACCGC 62.039 63.158 0.00 0.00 0.00 5.68
6033 8362 3.053291 GCCCGATCAAACACCGCA 61.053 61.111 0.00 0.00 0.00 5.69
6034 8363 2.406616 GCCCGATCAAACACCGCAT 61.407 57.895 0.00 0.00 0.00 4.73
6035 8364 1.721487 CCCGATCAAACACCGCATC 59.279 57.895 0.00 0.00 0.00 3.91
6036 8365 1.714899 CCCGATCAAACACCGCATCC 61.715 60.000 0.00 0.00 0.00 3.51
6037 8366 1.348250 CGATCAAACACCGCATCCG 59.652 57.895 0.00 0.00 0.00 4.18
6038 8367 1.062525 GATCAAACACCGCATCCGC 59.937 57.895 0.00 0.00 0.00 5.54
6079 8408 4.536687 CGGGCGCGGCAAAAGATC 62.537 66.667 34.30 13.79 0.00 2.75
6080 8409 3.134127 GGGCGCGGCAAAAGATCT 61.134 61.111 34.30 0.00 0.00 2.75
6081 8410 2.405191 GGCGCGGCAAAAGATCTC 59.595 61.111 29.32 0.00 0.00 2.75
6082 8411 2.405191 GCGCGGCAAAAGATCTCC 59.595 61.111 8.83 0.00 0.00 3.71
6083 8412 3.102097 CGCGGCAAAAGATCTCCC 58.898 61.111 0.00 0.00 0.00 4.30
6084 8413 2.472909 CGCGGCAAAAGATCTCCCC 61.473 63.158 0.00 0.00 0.00 4.81
6085 8414 2.121538 GCGGCAAAAGATCTCCCCC 61.122 63.158 0.00 0.00 0.00 5.40
6086 8415 1.819632 CGGCAAAAGATCTCCCCCG 60.820 63.158 0.00 2.66 0.00 5.73
6087 8416 1.607612 GGCAAAAGATCTCCCCCGA 59.392 57.895 0.00 0.00 0.00 5.14
6088 8417 0.748367 GGCAAAAGATCTCCCCCGAC 60.748 60.000 0.00 0.00 0.00 4.79
6089 8418 0.748367 GCAAAAGATCTCCCCCGACC 60.748 60.000 0.00 0.00 0.00 4.79
6090 8419 0.912486 CAAAAGATCTCCCCCGACCT 59.088 55.000 0.00 0.00 0.00 3.85
6091 8420 1.134371 CAAAAGATCTCCCCCGACCTC 60.134 57.143 0.00 0.00 0.00 3.85
6092 8421 0.340208 AAAGATCTCCCCCGACCTCT 59.660 55.000 0.00 0.00 0.00 3.69
6093 8422 1.232909 AAGATCTCCCCCGACCTCTA 58.767 55.000 0.00 0.00 0.00 2.43
6094 8423 0.774908 AGATCTCCCCCGACCTCTAG 59.225 60.000 0.00 0.00 0.00 2.43
6095 8424 0.772384 GATCTCCCCCGACCTCTAGA 59.228 60.000 0.00 0.00 0.00 2.43
6096 8425 1.356398 GATCTCCCCCGACCTCTAGAT 59.644 57.143 0.00 0.00 0.00 1.98
6097 8426 1.232909 TCTCCCCCGACCTCTAGATT 58.767 55.000 0.00 0.00 0.00 2.40
6098 8427 1.145325 TCTCCCCCGACCTCTAGATTC 59.855 57.143 0.00 0.00 0.00 2.52
6099 8428 0.931468 TCCCCCGACCTCTAGATTCA 59.069 55.000 0.00 0.00 0.00 2.57
6100 8429 1.503784 TCCCCCGACCTCTAGATTCAT 59.496 52.381 0.00 0.00 0.00 2.57
6101 8430 1.620819 CCCCCGACCTCTAGATTCATG 59.379 57.143 0.00 0.00 0.00 3.07
6102 8431 1.620819 CCCCGACCTCTAGATTCATGG 59.379 57.143 0.00 0.00 0.00 3.66
6103 8432 1.620819 CCCGACCTCTAGATTCATGGG 59.379 57.143 0.00 0.00 0.00 4.00
6104 8433 1.001406 CCGACCTCTAGATTCATGGGC 59.999 57.143 0.00 0.00 0.00 5.36
6105 8434 1.967066 CGACCTCTAGATTCATGGGCT 59.033 52.381 0.00 0.00 0.00 5.19
6106 8435 2.288702 CGACCTCTAGATTCATGGGCTG 60.289 54.545 0.00 0.00 0.00 4.85
6107 8436 2.038295 GACCTCTAGATTCATGGGCTGG 59.962 54.545 0.00 0.00 0.00 4.85
6108 8437 1.350351 CCTCTAGATTCATGGGCTGGG 59.650 57.143 0.00 0.00 0.00 4.45
6109 8438 2.333069 CTCTAGATTCATGGGCTGGGA 58.667 52.381 0.00 0.00 0.00 4.37
6110 8439 2.302445 CTCTAGATTCATGGGCTGGGAG 59.698 54.545 0.00 0.00 0.00 4.30
6111 8440 1.350351 CTAGATTCATGGGCTGGGAGG 59.650 57.143 0.00 0.00 0.00 4.30
6112 8441 0.327867 AGATTCATGGGCTGGGAGGA 60.328 55.000 0.00 0.00 0.00 3.71
6113 8442 0.179006 GATTCATGGGCTGGGAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
6114 8443 1.987807 ATTCATGGGCTGGGAGGACG 61.988 60.000 0.00 0.00 0.00 4.79
6115 8444 3.083349 CATGGGCTGGGAGGACGA 61.083 66.667 0.00 0.00 0.00 4.20
6116 8445 3.083997 ATGGGCTGGGAGGACGAC 61.084 66.667 0.00 0.00 0.00 4.34
6124 8453 3.519930 GGAGGACGACCCGAGCTC 61.520 72.222 2.73 2.73 40.87 4.09
6125 8454 3.878519 GAGGACGACCCGAGCTCG 61.879 72.222 29.06 29.06 40.87 5.03
6135 8464 3.686045 CGAGCTCGGCCCCTATCC 61.686 72.222 28.40 0.00 35.37 2.59
6139 8468 3.996124 CTCGGCCCCTATCCGCAG 61.996 72.222 0.00 0.00 46.05 5.18
6143 8472 4.671569 GCCCCTATCCGCAGCGAG 62.672 72.222 18.75 5.59 0.00 5.03
6144 8473 2.912542 CCCCTATCCGCAGCGAGA 60.913 66.667 18.75 12.55 0.00 4.04
6145 8474 2.279069 CCCCTATCCGCAGCGAGAT 61.279 63.158 18.75 18.76 0.00 2.75
6146 8475 1.668294 CCCTATCCGCAGCGAGATT 59.332 57.895 18.75 0.00 0.00 2.40
6147 8476 0.034059 CCCTATCCGCAGCGAGATTT 59.966 55.000 18.75 0.57 0.00 2.17
6148 8477 1.143305 CCTATCCGCAGCGAGATTTG 58.857 55.000 18.75 12.54 0.00 2.32
6149 8478 1.143305 CTATCCGCAGCGAGATTTGG 58.857 55.000 18.75 7.56 0.00 3.28
6150 8479 0.880278 TATCCGCAGCGAGATTTGGC 60.880 55.000 18.75 0.00 0.00 4.52
6151 8480 4.228097 CCGCAGCGAGATTTGGCG 62.228 66.667 18.75 0.00 46.61 5.69
6152 8481 4.228097 CGCAGCGAGATTTGGCGG 62.228 66.667 9.98 0.00 43.63 6.13
6153 8482 3.880846 GCAGCGAGATTTGGCGGG 61.881 66.667 0.00 0.00 32.70 6.13
6154 8483 2.125147 CAGCGAGATTTGGCGGGA 60.125 61.111 0.00 0.00 32.70 5.14
6155 8484 2.176273 CAGCGAGATTTGGCGGGAG 61.176 63.158 0.00 0.00 32.70 4.30
6156 8485 2.897350 GCGAGATTTGGCGGGAGG 60.897 66.667 0.00 0.00 0.00 4.30
6157 8486 2.203070 CGAGATTTGGCGGGAGGG 60.203 66.667 0.00 0.00 0.00 4.30
6158 8487 2.731571 CGAGATTTGGCGGGAGGGA 61.732 63.158 0.00 0.00 0.00 4.20
6159 8488 1.153147 GAGATTTGGCGGGAGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
6160 8489 1.910580 GAGATTTGGCGGGAGGGACA 61.911 60.000 0.00 0.00 0.00 4.02
6161 8490 1.227383 GATTTGGCGGGAGGGACAT 59.773 57.895 0.00 0.00 0.00 3.06
6162 8491 0.395724 GATTTGGCGGGAGGGACATT 60.396 55.000 0.00 0.00 0.00 2.71
6163 8492 0.041090 ATTTGGCGGGAGGGACATTT 59.959 50.000 0.00 0.00 0.00 2.32
6164 8493 0.610785 TTTGGCGGGAGGGACATTTC 60.611 55.000 0.00 0.00 0.00 2.17
6165 8494 2.124278 GGCGGGAGGGACATTTCC 60.124 66.667 0.00 0.00 41.95 3.13
6166 8495 2.513897 GCGGGAGGGACATTTCCG 60.514 66.667 0.00 0.00 43.94 4.30
6167 8496 2.513897 CGGGAGGGACATTTCCGC 60.514 66.667 0.00 0.00 43.94 5.54
6168 8497 2.513897 GGGAGGGACATTTCCGCG 60.514 66.667 0.00 0.00 43.94 6.46
6169 8498 2.267961 GGAGGGACATTTCCGCGT 59.732 61.111 4.92 0.00 43.94 6.01
6170 8499 2.106683 GGAGGGACATTTCCGCGTG 61.107 63.158 4.92 0.00 43.94 5.34
6171 8500 2.046314 AGGGACATTTCCGCGTGG 60.046 61.111 9.28 9.28 43.94 4.94
6172 8501 3.810896 GGGACATTTCCGCGTGGC 61.811 66.667 11.05 0.00 43.94 5.01
6173 8502 3.810896 GGACATTTCCGCGTGGCC 61.811 66.667 11.05 4.01 36.12 5.36
6174 8503 4.160635 GACATTTCCGCGTGGCCG 62.161 66.667 11.05 0.45 34.14 6.13
6176 8505 3.732892 CATTTCCGCGTGGCCGTT 61.733 61.111 11.05 0.00 36.15 4.44
6177 8506 3.428282 ATTTCCGCGTGGCCGTTC 61.428 61.111 11.05 0.00 36.15 3.95
6202 8531 4.047125 CCACCCTCCGCCACCATT 62.047 66.667 0.00 0.00 0.00 3.16
6203 8532 2.751436 CACCCTCCGCCACCATTG 60.751 66.667 0.00 0.00 0.00 2.82
6204 8533 4.740822 ACCCTCCGCCACCATTGC 62.741 66.667 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.328382 TTCGGATCACTCGGTTCAATT 57.672 42.857 0.00 0.00 0.00 2.32
1 2 3.328382 TTTCGGATCACTCGGTTCAAT 57.672 42.857 0.00 0.00 0.00 2.57
2 3 2.803956 GTTTTCGGATCACTCGGTTCAA 59.196 45.455 0.00 0.00 0.00 2.69
3 4 2.036733 AGTTTTCGGATCACTCGGTTCA 59.963 45.455 0.00 0.00 0.00 3.18
4 5 2.412089 CAGTTTTCGGATCACTCGGTTC 59.588 50.000 0.00 0.00 0.00 3.62
5 6 2.413837 CAGTTTTCGGATCACTCGGTT 58.586 47.619 0.00 0.00 0.00 4.44
6 7 1.337823 CCAGTTTTCGGATCACTCGGT 60.338 52.381 0.00 0.00 0.00 4.69
7 8 1.359848 CCAGTTTTCGGATCACTCGG 58.640 55.000 0.00 0.00 0.00 4.63
8 9 0.721718 GCCAGTTTTCGGATCACTCG 59.278 55.000 0.00 0.00 0.00 4.18
9 10 0.721718 CGCCAGTTTTCGGATCACTC 59.278 55.000 0.00 0.00 0.00 3.51
10 11 0.034896 ACGCCAGTTTTCGGATCACT 59.965 50.000 0.00 0.00 0.00 3.41
11 12 0.165944 CACGCCAGTTTTCGGATCAC 59.834 55.000 0.00 0.00 0.00 3.06
12 13 0.953471 CCACGCCAGTTTTCGGATCA 60.953 55.000 0.00 0.00 0.00 2.92
13 14 0.672401 TCCACGCCAGTTTTCGGATC 60.672 55.000 0.00 0.00 0.00 3.36
14 15 0.035439 ATCCACGCCAGTTTTCGGAT 60.035 50.000 0.00 0.00 0.00 4.18
15 16 0.953471 CATCCACGCCAGTTTTCGGA 60.953 55.000 0.00 0.00 0.00 4.55
16 17 1.501741 CATCCACGCCAGTTTTCGG 59.498 57.895 0.00 0.00 0.00 4.30
17 18 1.154225 GCATCCACGCCAGTTTTCG 60.154 57.895 0.00 0.00 0.00 3.46
18 19 1.398390 CTAGCATCCACGCCAGTTTTC 59.602 52.381 0.00 0.00 0.00 2.29
19 20 1.453155 CTAGCATCCACGCCAGTTTT 58.547 50.000 0.00 0.00 0.00 2.43
20 21 1.026718 GCTAGCATCCACGCCAGTTT 61.027 55.000 10.63 0.00 0.00 2.66
21 22 1.450312 GCTAGCATCCACGCCAGTT 60.450 57.895 10.63 0.00 0.00 3.16
22 23 2.187946 GCTAGCATCCACGCCAGT 59.812 61.111 10.63 0.00 0.00 4.00
23 24 2.590007 GGCTAGCATCCACGCCAG 60.590 66.667 18.24 0.00 42.06 4.85
24 25 4.529219 CGGCTAGCATCCACGCCA 62.529 66.667 18.24 0.00 42.59 5.69
25 26 4.530857 ACGGCTAGCATCCACGCC 62.531 66.667 18.24 0.00 39.14 5.68
26 27 2.962253 GACGGCTAGCATCCACGC 60.962 66.667 18.24 3.38 0.00 5.34
27 28 2.655364 CGACGGCTAGCATCCACG 60.655 66.667 18.24 12.79 0.00 4.94
28 29 1.589196 GTCGACGGCTAGCATCCAC 60.589 63.158 18.24 8.55 0.00 4.02
29 30 2.049767 TGTCGACGGCTAGCATCCA 61.050 57.895 18.24 5.21 0.00 3.41
30 31 1.589196 GTGTCGACGGCTAGCATCC 60.589 63.158 18.24 3.21 0.00 3.51
31 32 1.589196 GGTGTCGACGGCTAGCATC 60.589 63.158 18.24 12.39 0.00 3.91
32 33 2.494918 GGTGTCGACGGCTAGCAT 59.505 61.111 18.24 3.31 0.00 3.79
33 34 4.111016 CGGTGTCGACGGCTAGCA 62.111 66.667 18.24 0.00 39.00 3.49
34 35 2.807631 TTTCGGTGTCGACGGCTAGC 62.808 60.000 11.62 6.04 45.92 3.42
35 36 0.179145 ATTTCGGTGTCGACGGCTAG 60.179 55.000 11.62 5.54 45.92 3.42
36 37 0.244450 AATTTCGGTGTCGACGGCTA 59.756 50.000 11.62 0.00 45.92 3.93
37 38 0.601841 AAATTTCGGTGTCGACGGCT 60.602 50.000 11.62 0.00 45.92 5.52
38 39 0.179233 GAAATTTCGGTGTCGACGGC 60.179 55.000 11.62 6.23 45.92 5.68
39 40 0.092351 CGAAATTTCGGTGTCGACGG 59.908 55.000 28.73 2.80 45.92 4.79
40 41 3.538346 CGAAATTTCGGTGTCGACG 57.462 52.632 28.73 4.36 45.92 5.12
50 51 0.591659 GCCCGCCCTATCGAAATTTC 59.408 55.000 8.20 8.20 0.00 2.17
68 69 3.381136 TTTGGAATGCAGCCGGGC 61.381 61.111 12.11 12.11 0.00 6.13
91 92 3.004002 TGATTCAGTAGTCGACACGTTGT 59.996 43.478 19.50 0.00 0.00 3.32
107 108 3.200483 CGCTGGAGTGATGAATGATTCA 58.800 45.455 10.65 10.65 45.01 2.57
108 109 3.201290 ACGCTGGAGTGATGAATGATTC 58.799 45.455 0.00 0.00 0.00 2.52
109 110 3.272574 ACGCTGGAGTGATGAATGATT 57.727 42.857 0.00 0.00 0.00 2.57
111 112 2.768253 AACGCTGGAGTGATGAATGA 57.232 45.000 0.00 0.00 0.00 2.57
112 113 4.944962 TTTAACGCTGGAGTGATGAATG 57.055 40.909 0.00 0.00 0.00 2.67
113 114 4.201950 GCATTTAACGCTGGAGTGATGAAT 60.202 41.667 0.00 0.00 0.00 2.57
114 115 3.126858 GCATTTAACGCTGGAGTGATGAA 59.873 43.478 0.00 0.00 0.00 2.57
115 116 2.677836 GCATTTAACGCTGGAGTGATGA 59.322 45.455 0.00 0.00 0.00 2.92
124 137 2.414559 CCAAGTCTGGCATTTAACGCTG 60.415 50.000 0.00 0.00 35.39 5.18
149 162 1.411394 CTTTCCGAAGTGCGACGTAA 58.589 50.000 0.00 0.00 44.57 3.18
162 175 2.357517 ACTGAGCACCGCTTTCCG 60.358 61.111 0.00 0.00 39.88 4.30
228 241 2.021931 CGCGCCGAATGCTTTCTC 59.978 61.111 0.00 2.07 38.05 2.87
256 269 1.344837 CACAACGATCCGCATCACG 59.655 57.895 0.00 0.00 43.15 4.35
292 305 2.875933 TCATTTTCCATCGTTATCGCCC 59.124 45.455 0.00 0.00 36.96 6.13
293 306 3.607078 GCTCATTTTCCATCGTTATCGCC 60.607 47.826 0.00 0.00 36.96 5.54
294 307 3.545633 GCTCATTTTCCATCGTTATCGC 58.454 45.455 0.00 0.00 36.96 4.58
295 308 3.809832 AGGCTCATTTTCCATCGTTATCG 59.190 43.478 0.00 0.00 38.55 2.92
296 309 4.084328 CGAGGCTCATTTTCCATCGTTATC 60.084 45.833 15.95 0.00 0.00 1.75
297 310 3.809832 CGAGGCTCATTTTCCATCGTTAT 59.190 43.478 15.95 0.00 0.00 1.89
298 311 3.194861 CGAGGCTCATTTTCCATCGTTA 58.805 45.455 15.95 0.00 0.00 3.18
299 312 2.009774 CGAGGCTCATTTTCCATCGTT 58.990 47.619 15.95 0.00 0.00 3.85
300 313 1.656652 CGAGGCTCATTTTCCATCGT 58.343 50.000 15.95 0.00 0.00 3.73
301 314 0.305922 GCGAGGCTCATTTTCCATCG 59.694 55.000 15.95 0.00 0.00 3.84
302 315 0.665298 GGCGAGGCTCATTTTCCATC 59.335 55.000 15.95 0.00 0.00 3.51
303 316 0.257039 AGGCGAGGCTCATTTTCCAT 59.743 50.000 15.95 0.00 0.00 3.41
304 317 0.392998 GAGGCGAGGCTCATTTTCCA 60.393 55.000 19.80 0.00 0.00 3.53
305 318 0.392998 TGAGGCGAGGCTCATTTTCC 60.393 55.000 22.82 6.94 0.00 3.13
306 319 1.012841 CTGAGGCGAGGCTCATTTTC 58.987 55.000 25.88 6.81 0.00 2.29
307 320 0.326264 ACTGAGGCGAGGCTCATTTT 59.674 50.000 25.88 13.04 0.00 1.82
308 321 1.195115 TACTGAGGCGAGGCTCATTT 58.805 50.000 25.88 18.77 0.00 2.32
309 322 1.418334 ATACTGAGGCGAGGCTCATT 58.582 50.000 25.88 22.63 0.00 2.57
310 323 1.889829 GTATACTGAGGCGAGGCTCAT 59.110 52.381 25.88 18.50 0.00 2.90
311 324 1.133761 AGTATACTGAGGCGAGGCTCA 60.134 52.381 24.51 24.51 0.00 4.26
312 325 1.611519 AGTATACTGAGGCGAGGCTC 58.388 55.000 18.23 18.23 0.00 4.70
313 326 2.506444 GTAGTATACTGAGGCGAGGCT 58.494 52.381 15.90 0.00 38.91 4.58
314 327 2.993449 GTAGTATACTGAGGCGAGGC 57.007 55.000 15.90 0.00 38.91 4.70
325 338 2.954318 TGGGCGTGAAGGAGTAGTATAC 59.046 50.000 0.00 0.00 43.47 1.47
326 339 3.301794 TGGGCGTGAAGGAGTAGTATA 57.698 47.619 0.00 0.00 0.00 1.47
327 340 2.154567 TGGGCGTGAAGGAGTAGTAT 57.845 50.000 0.00 0.00 0.00 2.12
328 341 1.927487 TTGGGCGTGAAGGAGTAGTA 58.073 50.000 0.00 0.00 0.00 1.82
329 342 1.053424 TTTGGGCGTGAAGGAGTAGT 58.947 50.000 0.00 0.00 0.00 2.73
330 343 2.178912 TTTTGGGCGTGAAGGAGTAG 57.821 50.000 0.00 0.00 0.00 2.57
331 344 2.304761 AGATTTTGGGCGTGAAGGAGTA 59.695 45.455 0.00 0.00 0.00 2.59
332 345 1.073923 AGATTTTGGGCGTGAAGGAGT 59.926 47.619 0.00 0.00 0.00 3.85
333 346 1.470098 CAGATTTTGGGCGTGAAGGAG 59.530 52.381 0.00 0.00 0.00 3.69
334 347 1.533625 CAGATTTTGGGCGTGAAGGA 58.466 50.000 0.00 0.00 0.00 3.36
335 348 0.109132 GCAGATTTTGGGCGTGAAGG 60.109 55.000 0.00 0.00 0.00 3.46
336 349 0.109132 GGCAGATTTTGGGCGTGAAG 60.109 55.000 0.00 0.00 0.00 3.02
337 350 1.531739 GGGCAGATTTTGGGCGTGAA 61.532 55.000 0.00 0.00 0.00 3.18
338 351 1.976474 GGGCAGATTTTGGGCGTGA 60.976 57.895 0.00 0.00 0.00 4.35
339 352 2.573340 GGGCAGATTTTGGGCGTG 59.427 61.111 0.00 0.00 0.00 5.34
340 353 3.061848 CGGGCAGATTTTGGGCGT 61.062 61.111 0.00 0.00 0.00 5.68
341 354 3.825611 CCGGGCAGATTTTGGGCG 61.826 66.667 0.00 0.00 0.00 6.13
342 355 1.379309 TACCGGGCAGATTTTGGGC 60.379 57.895 6.32 0.00 0.00 5.36
343 356 0.034477 ACTACCGGGCAGATTTTGGG 60.034 55.000 6.32 0.00 0.00 4.12
344 357 2.093128 ACTACTACCGGGCAGATTTTGG 60.093 50.000 6.32 0.00 0.00 3.28
345 358 3.261981 ACTACTACCGGGCAGATTTTG 57.738 47.619 6.32 0.00 0.00 2.44
346 359 5.625568 ATTACTACTACCGGGCAGATTTT 57.374 39.130 6.32 0.00 0.00 1.82
347 360 5.837438 AGTATTACTACTACCGGGCAGATTT 59.163 40.000 6.32 0.00 36.40 2.17
348 361 5.243283 CAGTATTACTACTACCGGGCAGATT 59.757 44.000 6.32 0.00 35.99 2.40
349 362 4.765856 CAGTATTACTACTACCGGGCAGAT 59.234 45.833 6.32 0.00 35.99 2.90
350 363 4.139786 CAGTATTACTACTACCGGGCAGA 58.860 47.826 6.32 0.00 35.99 4.26
351 364 4.139786 TCAGTATTACTACTACCGGGCAG 58.860 47.826 6.32 4.89 35.99 4.85
352 365 4.139786 CTCAGTATTACTACTACCGGGCA 58.860 47.826 6.32 0.00 35.99 5.36
353 366 3.505293 CCTCAGTATTACTACTACCGGGC 59.495 52.174 6.32 0.00 35.99 6.13
354 367 3.505293 GCCTCAGTATTACTACTACCGGG 59.495 52.174 6.32 0.00 35.99 5.73
355 368 4.396522 AGCCTCAGTATTACTACTACCGG 58.603 47.826 0.00 0.00 35.99 5.28
356 369 6.388435 AAAGCCTCAGTATTACTACTACCG 57.612 41.667 0.00 0.00 35.99 4.02
357 370 8.476447 AGAAAAAGCCTCAGTATTACTACTACC 58.524 37.037 0.00 0.00 35.99 3.18
358 371 9.303537 CAGAAAAAGCCTCAGTATTACTACTAC 57.696 37.037 0.00 0.00 35.99 2.73
359 372 9.032624 ACAGAAAAAGCCTCAGTATTACTACTA 57.967 33.333 0.00 0.00 35.99 1.82
360 373 7.908453 ACAGAAAAAGCCTCAGTATTACTACT 58.092 34.615 0.00 0.00 38.79 2.57
361 374 9.819267 ATACAGAAAAAGCCTCAGTATTACTAC 57.181 33.333 0.00 0.00 0.00 2.73
362 375 9.817809 CATACAGAAAAAGCCTCAGTATTACTA 57.182 33.333 0.00 0.00 0.00 1.82
363 376 7.770897 CCATACAGAAAAAGCCTCAGTATTACT 59.229 37.037 0.00 0.00 0.00 2.24
364 377 7.012421 CCCATACAGAAAAAGCCTCAGTATTAC 59.988 40.741 0.00 0.00 0.00 1.89
365 378 7.054124 CCCATACAGAAAAAGCCTCAGTATTA 58.946 38.462 0.00 0.00 0.00 0.98
366 379 5.888161 CCCATACAGAAAAAGCCTCAGTATT 59.112 40.000 0.00 0.00 0.00 1.89
367 380 5.440610 CCCATACAGAAAAAGCCTCAGTAT 58.559 41.667 0.00 0.00 0.00 2.12
368 381 4.843728 CCCATACAGAAAAAGCCTCAGTA 58.156 43.478 0.00 0.00 0.00 2.74
369 382 3.690460 CCCATACAGAAAAAGCCTCAGT 58.310 45.455 0.00 0.00 0.00 3.41
370 383 2.424956 GCCCATACAGAAAAAGCCTCAG 59.575 50.000 0.00 0.00 0.00 3.35
371 384 2.446435 GCCCATACAGAAAAAGCCTCA 58.554 47.619 0.00 0.00 0.00 3.86
372 385 1.401905 CGCCCATACAGAAAAAGCCTC 59.598 52.381 0.00 0.00 0.00 4.70
373 386 1.463674 CGCCCATACAGAAAAAGCCT 58.536 50.000 0.00 0.00 0.00 4.58
374 387 0.455815 CCGCCCATACAGAAAAAGCC 59.544 55.000 0.00 0.00 0.00 4.35
375 388 0.179137 GCCGCCCATACAGAAAAAGC 60.179 55.000 0.00 0.00 0.00 3.51
376 389 1.135402 GTGCCGCCCATACAGAAAAAG 60.135 52.381 0.00 0.00 0.00 2.27
377 390 0.885196 GTGCCGCCCATACAGAAAAA 59.115 50.000 0.00 0.00 0.00 1.94
378 391 1.302383 CGTGCCGCCCATACAGAAAA 61.302 55.000 0.00 0.00 0.00 2.29
379 392 1.743623 CGTGCCGCCCATACAGAAA 60.744 57.895 0.00 0.00 0.00 2.52
380 393 2.125310 CGTGCCGCCCATACAGAA 60.125 61.111 0.00 0.00 0.00 3.02
393 406 4.743644 GGATGAAATACAGTACTACCGTGC 59.256 45.833 0.00 0.00 0.00 5.34
396 409 6.040616 AGGAAGGATGAAATACAGTACTACCG 59.959 42.308 0.00 0.00 0.00 4.02
397 410 7.210873 CAGGAAGGATGAAATACAGTACTACC 58.789 42.308 0.00 0.00 0.00 3.18
398 411 6.702282 GCAGGAAGGATGAAATACAGTACTAC 59.298 42.308 0.00 0.00 0.00 2.73
399 412 6.382859 TGCAGGAAGGATGAAATACAGTACTA 59.617 38.462 0.00 0.00 0.00 1.82
401 414 5.294552 GTGCAGGAAGGATGAAATACAGTAC 59.705 44.000 0.00 0.00 0.00 2.73
402 415 5.428253 GTGCAGGAAGGATGAAATACAGTA 58.572 41.667 0.00 0.00 0.00 2.74
403 416 4.265073 GTGCAGGAAGGATGAAATACAGT 58.735 43.478 0.00 0.00 0.00 3.55
404 417 3.310774 CGTGCAGGAAGGATGAAATACAG 59.689 47.826 0.00 0.00 0.00 2.74
405 418 3.055458 TCGTGCAGGAAGGATGAAATACA 60.055 43.478 6.64 0.00 29.89 2.29
406 419 3.531538 TCGTGCAGGAAGGATGAAATAC 58.468 45.455 6.64 0.00 29.89 1.89
434 447 5.009210 TCGAACCGTTTTCAAGATTTTCCAT 59.991 36.000 0.00 0.00 0.00 3.41
435 448 4.335874 TCGAACCGTTTTCAAGATTTTCCA 59.664 37.500 0.00 0.00 0.00 3.53
436 449 4.673761 GTCGAACCGTTTTCAAGATTTTCC 59.326 41.667 0.00 0.00 0.00 3.13
437 450 5.267776 TGTCGAACCGTTTTCAAGATTTTC 58.732 37.500 0.00 0.00 0.00 2.29
440 453 5.432885 AATGTCGAACCGTTTTCAAGATT 57.567 34.783 0.00 0.00 0.00 2.40
441 454 6.368213 GTTAATGTCGAACCGTTTTCAAGAT 58.632 36.000 0.00 0.00 0.00 2.40
442 455 5.277442 GGTTAATGTCGAACCGTTTTCAAGA 60.277 40.000 0.00 0.00 37.22 3.02
443 456 4.907582 GGTTAATGTCGAACCGTTTTCAAG 59.092 41.667 0.00 0.00 37.22 3.02
444 457 4.846509 GGTTAATGTCGAACCGTTTTCAA 58.153 39.130 0.00 0.00 37.22 2.69
445 458 4.471157 GGTTAATGTCGAACCGTTTTCA 57.529 40.909 0.00 0.00 37.22 2.69
454 467 1.195900 GCTGTTGCGGTTAATGTCGAA 59.804 47.619 0.00 0.00 0.00 3.71
480 493 2.099638 GAATTTCGGCCGCGGTTC 59.900 61.111 28.70 19.06 0.00 3.62
549 1898 1.674651 GCGAGGGGACAAGGGAAAC 60.675 63.158 0.00 0.00 0.00 2.78
1301 2650 2.362632 AGAGGAAGGACCCGTCGG 60.363 66.667 3.60 3.60 40.05 4.79
1488 2837 4.560856 CGAAGAGGAGAGCCCGCG 62.561 72.222 0.00 0.00 39.97 6.46
1542 2891 4.101448 CCCGAACCCAGGGCAGAG 62.101 72.222 4.91 0.00 42.77 3.35
1553 2902 3.047093 CACCGAAACAAAAATCCCGAAC 58.953 45.455 0.00 0.00 0.00 3.95
1808 3160 6.468543 AGCTCTTAGGAAGTAAAACAGGAAG 58.531 40.000 0.00 0.00 0.00 3.46
1850 3202 9.507329 ACTTAGTAGTCACATCAACATGAAAAT 57.493 29.630 0.00 0.00 33.72 1.82
1851 3203 8.773645 CACTTAGTAGTCACATCAACATGAAAA 58.226 33.333 0.00 0.00 30.81 2.29
1852 3204 7.931407 ACACTTAGTAGTCACATCAACATGAAA 59.069 33.333 0.00 0.00 30.81 2.69
1853 3205 7.441836 ACACTTAGTAGTCACATCAACATGAA 58.558 34.615 0.00 0.00 30.81 2.57
1854 3206 6.993079 ACACTTAGTAGTCACATCAACATGA 58.007 36.000 0.00 0.00 30.81 3.07
1855 3207 8.932945 ATACACTTAGTAGTCACATCAACATG 57.067 34.615 0.00 0.00 35.85 3.21
1856 3208 9.944376 AAATACACTTAGTAGTCACATCAACAT 57.056 29.630 0.00 0.00 35.85 2.71
1857 3209 9.772973 AAAATACACTTAGTAGTCACATCAACA 57.227 29.630 0.00 0.00 35.85 3.33
1859 3211 9.990360 TGAAAATACACTTAGTAGTCACATCAA 57.010 29.630 0.00 0.00 35.85 2.57
1862 3214 9.944376 ACATGAAAATACACTTAGTAGTCACAT 57.056 29.630 0.00 0.00 35.85 3.21
1863 3215 9.772973 AACATGAAAATACACTTAGTAGTCACA 57.227 29.630 0.00 0.00 35.85 3.58
1865 3217 9.990360 TCAACATGAAAATACACTTAGTAGTCA 57.010 29.630 0.00 0.00 35.85 3.41
1870 3222 9.283768 TCACATCAACATGAAAATACACTTAGT 57.716 29.630 0.00 0.00 33.72 2.24
1871 3223 9.546909 GTCACATCAACATGAAAATACACTTAG 57.453 33.333 0.00 0.00 33.72 2.18
1872 3224 9.283768 AGTCACATCAACATGAAAATACACTTA 57.716 29.630 0.00 0.00 33.72 2.24
1873 3225 8.169977 AGTCACATCAACATGAAAATACACTT 57.830 30.769 0.00 0.00 33.72 3.16
1874 3226 7.750229 AGTCACATCAACATGAAAATACACT 57.250 32.000 0.00 0.00 33.72 3.55
1875 3227 8.721478 ACTAGTCACATCAACATGAAAATACAC 58.279 33.333 0.00 0.00 33.72 2.90
1876 3228 8.846943 ACTAGTCACATCAACATGAAAATACA 57.153 30.769 0.00 0.00 33.72 2.29
1946 3299 1.275291 ACCACATTACACCAGACTCCG 59.725 52.381 0.00 0.00 0.00 4.63
1955 3308 5.221048 GCCTCCATAATTCACCACATTACAC 60.221 44.000 0.00 0.00 0.00 2.90
1977 3330 2.859992 CTGGTCTACAGCAAAGGCC 58.140 57.895 0.00 0.00 40.97 5.19
2012 3365 1.666888 CGCAAGTGCAACCAGAATTCC 60.667 52.381 0.65 0.00 42.21 3.01
2208 4046 5.361285 ACTCATTTTGCTCCGTCTATAGTCT 59.639 40.000 0.00 0.00 0.00 3.24
2216 4054 3.686726 AGATTCACTCATTTTGCTCCGTC 59.313 43.478 0.00 0.00 0.00 4.79
2314 4211 6.633500 TCCACATTAGTTCAGTCAAAAAGG 57.367 37.500 0.00 0.00 0.00 3.11
2368 4265 5.681337 AAGAAGCAAGACTTTGTAAGCTC 57.319 39.130 0.00 0.00 39.29 4.09
2391 4288 6.071952 GGCTTCTCAACACCATTCAGAAAATA 60.072 38.462 0.00 0.00 0.00 1.40
2783 4681 1.379044 AGGGGCTGCACATGTTAGC 60.379 57.895 18.99 18.99 36.74 3.09
2886 4784 4.460731 TCGATGACATTTGCAAACCCAATA 59.539 37.500 15.41 0.00 0.00 1.90
3261 5159 1.064654 GGCTTTCGATGATCCACAAGC 59.935 52.381 5.79 5.79 0.00 4.01
3281 5179 1.293924 CACTCCCAAGCAGCTTATCG 58.706 55.000 7.52 0.00 0.00 2.92
3405 5305 9.476761 GCAACAACAAAAACATTTAGAGAAAAG 57.523 29.630 0.00 0.00 0.00 2.27
3891 5800 7.604164 TCTGATACTTCAAAACAATCAGGAGTC 59.396 37.037 9.93 0.00 42.38 3.36
4304 6288 5.959618 ACAGAAACCAAGGTGTATTAAGC 57.040 39.130 0.00 0.00 0.00 3.09
4334 6318 4.533311 ACTTATTTTGGAACGGAGGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
4335 6319 3.329814 ACTTATTTTGGAACGGAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
4336 6320 3.689649 CACTTATTTTGGAACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
4337 6321 3.073356 ACACTTATTTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
4338 6322 3.418047 ACACTTATTTTGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
4339 6323 4.069304 TGACACTTATTTTGGAACGGAGG 58.931 43.478 0.00 0.00 0.00 4.30
4340 6324 5.682943 TTGACACTTATTTTGGAACGGAG 57.317 39.130 0.00 0.00 0.00 4.63
4341 6325 4.023536 GCTTGACACTTATTTTGGAACGGA 60.024 41.667 0.00 0.00 0.00 4.69
4342 6326 4.023193 AGCTTGACACTTATTTTGGAACGG 60.023 41.667 0.00 0.00 0.00 4.44
4343 6327 5.108385 AGCTTGACACTTATTTTGGAACG 57.892 39.130 0.00 0.00 0.00 3.95
4344 6328 7.649057 ACTAAGCTTGACACTTATTTTGGAAC 58.351 34.615 9.86 0.00 0.00 3.62
4345 6329 7.817418 ACTAAGCTTGACACTTATTTTGGAA 57.183 32.000 9.86 0.00 0.00 3.53
4346 6330 7.934665 TGTACTAAGCTTGACACTTATTTTGGA 59.065 33.333 9.86 0.00 0.00 3.53
4347 6331 8.094798 TGTACTAAGCTTGACACTTATTTTGG 57.905 34.615 9.86 0.00 0.00 3.28
4348 6332 9.382244 GTTGTACTAAGCTTGACACTTATTTTG 57.618 33.333 9.86 0.00 0.00 2.44
4349 6333 9.338622 AGTTGTACTAAGCTTGACACTTATTTT 57.661 29.630 9.86 0.00 0.00 1.82
4350 6334 8.904099 AGTTGTACTAAGCTTGACACTTATTT 57.096 30.769 9.86 0.00 0.00 1.40
4351 6335 8.904099 AAGTTGTACTAAGCTTGACACTTATT 57.096 30.769 9.86 1.02 0.00 1.40
4352 6336 8.774586 CAAAGTTGTACTAAGCTTGACACTTAT 58.225 33.333 9.86 6.01 0.00 1.73
4353 6337 7.767198 ACAAAGTTGTACTAAGCTTGACACTTA 59.233 33.333 9.86 0.00 40.16 2.24
4354 6338 6.598064 ACAAAGTTGTACTAAGCTTGACACTT 59.402 34.615 9.86 12.47 40.16 3.16
4355 6339 6.113411 ACAAAGTTGTACTAAGCTTGACACT 58.887 36.000 9.86 7.89 40.16 3.55
4356 6340 6.359480 ACAAAGTTGTACTAAGCTTGACAC 57.641 37.500 9.86 4.26 40.16 3.67
4393 6377 9.329913 CGTCCTAAAATAAGTGTCTCAAATTTG 57.670 33.333 12.15 12.15 0.00 2.32
4394 6378 8.512138 CCGTCCTAAAATAAGTGTCTCAAATTT 58.488 33.333 0.00 0.00 0.00 1.82
4395 6379 7.881232 TCCGTCCTAAAATAAGTGTCTCAAATT 59.119 33.333 0.00 0.00 0.00 1.82
4396 6380 7.391620 TCCGTCCTAAAATAAGTGTCTCAAAT 58.608 34.615 0.00 0.00 0.00 2.32
4397 6381 6.761312 TCCGTCCTAAAATAAGTGTCTCAAA 58.239 36.000 0.00 0.00 0.00 2.69
4398 6382 6.349243 TCCGTCCTAAAATAAGTGTCTCAA 57.651 37.500 0.00 0.00 0.00 3.02
4399 6383 5.105473 CCTCCGTCCTAAAATAAGTGTCTCA 60.105 44.000 0.00 0.00 0.00 3.27
4400 6384 5.349809 CCTCCGTCCTAAAATAAGTGTCTC 58.650 45.833 0.00 0.00 0.00 3.36
4401 6385 4.161754 CCCTCCGTCCTAAAATAAGTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
4402 6386 4.161001 TCCCTCCGTCCTAAAATAAGTGTC 59.839 45.833 0.00 0.00 0.00 3.67
4403 6387 4.098894 TCCCTCCGTCCTAAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
4404 6388 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
4405 6389 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
4406 6390 6.667558 ATACTCCCTCCGTCCTAAAATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4407 6391 8.551682 TTTATACTCCCTCCGTCCTAAAATAA 57.448 34.615 0.00 0.00 0.00 1.40
4408 6392 8.731591 ATTTATACTCCCTCCGTCCTAAAATA 57.268 34.615 0.00 0.00 0.00 1.40
4409 6393 7.628501 ATTTATACTCCCTCCGTCCTAAAAT 57.371 36.000 0.00 0.00 0.00 1.82
4410 6394 8.551682 TTATTTATACTCCCTCCGTCCTAAAA 57.448 34.615 0.00 0.00 0.00 1.52
4411 6395 8.731591 ATTATTTATACTCCCTCCGTCCTAAA 57.268 34.615 0.00 0.00 0.00 1.85
4412 6396 8.731591 AATTATTTATACTCCCTCCGTCCTAA 57.268 34.615 0.00 0.00 0.00 2.69
4414 6398 8.912614 ATAATTATTTATACTCCCTCCGTCCT 57.087 34.615 0.00 0.00 0.00 3.85
4415 6399 9.379791 CAATAATTATTTATACTCCCTCCGTCC 57.620 37.037 8.01 0.00 0.00 4.79
4417 6401 9.939802 GTCAATAATTATTTATACTCCCTCCGT 57.060 33.333 8.01 0.00 0.00 4.69
4418 6402 9.938280 TGTCAATAATTATTTATACTCCCTCCG 57.062 33.333 8.01 0.00 0.00 4.63
4533 6517 6.169094 ACATTTGAGACTATGTCAACCTCAG 58.831 40.000 0.46 0.00 35.60 3.35
4598 6582 7.456902 AGAAATAAGGGGCCGACTCTTTATATA 59.543 37.037 0.00 0.00 0.00 0.86
4700 6684 1.199789 GCAGATTTTGTCGATGTGGCA 59.800 47.619 0.00 0.00 0.00 4.92
4820 6804 6.204688 GGATCAATCGCCTGTAACATGAATTA 59.795 38.462 0.00 0.00 0.00 1.40
4835 6819 2.611225 AGGAACTCTGGATCAATCGC 57.389 50.000 0.00 0.00 0.00 4.58
4847 6831 7.988028 ACAGCCTGTAATATAAGAAAGGAACTC 59.012 37.037 0.00 0.00 38.49 3.01
5109 7093 4.220382 TGTCCACTAGGCATTTGATTTTGG 59.780 41.667 0.00 0.00 33.74 3.28
5121 7105 3.510360 TCTTACAACTCTGTCCACTAGGC 59.490 47.826 0.00 0.00 36.96 3.93
5140 7124 1.303317 AACCGCCGGCAAATCTCTT 60.303 52.632 28.98 2.76 0.00 2.85
5201 7185 4.458989 TCAAAGAGTCATGGCCAACATTAC 59.541 41.667 10.96 3.69 37.84 1.89
5265 7249 0.169009 GACAACTGCAGCGGAAATCC 59.831 55.000 15.27 0.00 0.00 3.01
5272 7256 0.602638 TACCTTGGACAACTGCAGCG 60.603 55.000 15.27 8.03 0.00 5.18
5316 7300 5.751243 TGAAAAGAACTACAGGCACTTTC 57.249 39.130 0.00 0.00 34.60 2.62
5485 7469 8.596271 TCTTGAATGAAAACGTTAGATACACA 57.404 30.769 0.00 0.00 0.00 3.72
5628 7612 1.764134 TGTACACGGGTGAGTTTTCCT 59.236 47.619 0.00 0.00 0.00 3.36
5641 7625 3.352338 GAGGCCCCGAGTGTACACG 62.352 68.421 19.93 9.53 36.20 4.49
5652 7640 2.443255 TCCTATGAATCAAAGAGGCCCC 59.557 50.000 0.00 0.00 0.00 5.80
5703 7691 3.187227 GCAATAGGGCATGACACTATTCG 59.813 47.826 16.80 14.09 35.77 3.34
5721 7711 7.141758 TCTTCCAAATCCTATAGAGTGCAAT 57.858 36.000 0.00 0.00 0.00 3.56
5728 7718 8.146053 TCAAACACTCTTCCAAATCCTATAGA 57.854 34.615 0.00 0.00 0.00 1.98
5762 7752 7.847096 ACCTGTTTGTTAGATTCCTTTGTTTT 58.153 30.769 0.00 0.00 0.00 2.43
5831 8125 3.127548 GCATCGGTCATTTGATTCACAGT 59.872 43.478 0.00 0.00 0.00 3.55
5928 8257 3.134804 GGGGTCTGCTAGAGATGCTTTTA 59.865 47.826 0.00 0.00 31.63 1.52
5932 8261 1.112315 CGGGGTCTGCTAGAGATGCT 61.112 60.000 0.00 0.00 31.63 3.79
5933 8262 1.365633 CGGGGTCTGCTAGAGATGC 59.634 63.158 0.00 0.00 31.63 3.91
5934 8263 1.365633 GCGGGGTCTGCTAGAGATG 59.634 63.158 0.00 0.00 31.63 2.90
5935 8264 0.470833 ATGCGGGGTCTGCTAGAGAT 60.471 55.000 0.00 0.00 31.63 2.75
5938 8267 2.134287 GGATGCGGGGTCTGCTAGA 61.134 63.158 0.00 0.00 0.00 2.43
5939 8268 2.423446 GGATGCGGGGTCTGCTAG 59.577 66.667 0.30 0.00 0.00 3.42
5940 8269 3.161450 GGGATGCGGGGTCTGCTA 61.161 66.667 0.30 0.00 0.00 3.49
5958 8287 2.047443 TTATTTTGCGGGTCGGGGC 61.047 57.895 0.00 0.00 0.00 5.80
5959 8288 1.659622 GGTTATTTTGCGGGTCGGGG 61.660 60.000 0.00 0.00 0.00 5.73
5960 8289 1.804598 GGTTATTTTGCGGGTCGGG 59.195 57.895 0.00 0.00 0.00 5.14
5961 8290 1.426223 CGGTTATTTTGCGGGTCGG 59.574 57.895 0.00 0.00 0.00 4.79
5962 8291 1.226184 GCGGTTATTTTGCGGGTCG 60.226 57.895 0.00 0.00 0.00 4.79
5963 8292 1.371595 TAGCGGTTATTTTGCGGGTC 58.628 50.000 0.00 0.00 0.00 4.46
5964 8293 1.823797 TTAGCGGTTATTTTGCGGGT 58.176 45.000 0.00 0.00 0.00 5.28
5965 8294 2.923605 TTTAGCGGTTATTTTGCGGG 57.076 45.000 0.00 0.00 0.00 6.13
5966 8295 4.435231 CGTATTTTAGCGGTTATTTTGCGG 59.565 41.667 0.00 0.00 0.00 5.69
5967 8296 4.435231 CCGTATTTTAGCGGTTATTTTGCG 59.565 41.667 0.00 0.00 42.73 4.85
5968 8297 4.736307 CCCGTATTTTAGCGGTTATTTTGC 59.264 41.667 0.00 0.00 45.91 3.68
5969 8298 5.882553 ACCCGTATTTTAGCGGTTATTTTG 58.117 37.500 0.00 0.00 45.91 2.44
5970 8299 5.647225 TGACCCGTATTTTAGCGGTTATTTT 59.353 36.000 0.00 0.00 45.91 1.82
5971 8300 5.065090 GTGACCCGTATTTTAGCGGTTATTT 59.935 40.000 0.00 0.00 45.91 1.40
5972 8301 4.571984 GTGACCCGTATTTTAGCGGTTATT 59.428 41.667 0.00 0.00 45.91 1.40
5973 8302 4.122046 GTGACCCGTATTTTAGCGGTTAT 58.878 43.478 0.00 0.00 45.91 1.89
5974 8303 3.520569 GTGACCCGTATTTTAGCGGTTA 58.479 45.455 0.00 0.00 45.91 2.85
5975 8304 2.349590 GTGACCCGTATTTTAGCGGTT 58.650 47.619 0.00 0.00 45.91 4.44
5976 8305 1.736696 CGTGACCCGTATTTTAGCGGT 60.737 52.381 0.00 0.00 45.91 5.68
5977 8306 0.925466 CGTGACCCGTATTTTAGCGG 59.075 55.000 0.00 0.00 46.80 5.52
5978 8307 0.925466 CCGTGACCCGTATTTTAGCG 59.075 55.000 0.00 0.00 33.66 4.26
5979 8308 1.292992 CCCGTGACCCGTATTTTAGC 58.707 55.000 0.00 0.00 33.66 3.09
5980 8309 2.674357 CAACCCGTGACCCGTATTTTAG 59.326 50.000 0.00 0.00 33.66 1.85
5981 8310 2.614987 CCAACCCGTGACCCGTATTTTA 60.615 50.000 0.00 0.00 33.66 1.52
5982 8311 1.525941 CAACCCGTGACCCGTATTTT 58.474 50.000 0.00 0.00 33.66 1.82
5983 8312 0.321830 CCAACCCGTGACCCGTATTT 60.322 55.000 0.00 0.00 33.66 1.40
5984 8313 1.297364 CCAACCCGTGACCCGTATT 59.703 57.895 0.00 0.00 33.66 1.89
5985 8314 2.662070 CCCAACCCGTGACCCGTAT 61.662 63.158 0.00 0.00 33.66 3.06
5986 8315 3.312718 CCCAACCCGTGACCCGTA 61.313 66.667 0.00 0.00 33.66 4.02
5989 8318 4.653888 CACCCCAACCCGTGACCC 62.654 72.222 0.00 0.00 31.36 4.46
5990 8319 4.653888 CCACCCCAACCCGTGACC 62.654 72.222 0.00 0.00 31.36 4.02
5991 8320 4.653888 CCCACCCCAACCCGTGAC 62.654 72.222 0.00 0.00 31.36 3.67
5992 8321 4.902258 TCCCACCCCAACCCGTGA 62.902 66.667 0.00 0.00 31.36 4.35
5993 8322 2.930777 TTTTCCCACCCCAACCCGTG 62.931 60.000 0.00 0.00 0.00 4.94
5994 8323 2.702302 TTTTCCCACCCCAACCCGT 61.702 57.895 0.00 0.00 0.00 5.28
5995 8324 2.198980 TTTTCCCACCCCAACCCG 59.801 61.111 0.00 0.00 0.00 5.28
5996 8325 1.839747 GGTTTTCCCACCCCAACCC 60.840 63.158 0.00 0.00 33.77 4.11
5997 8326 1.118965 CAGGTTTTCCCACCCCAACC 61.119 60.000 0.00 0.00 41.86 3.77
5998 8327 1.754380 GCAGGTTTTCCCACCCCAAC 61.754 60.000 0.00 0.00 41.86 3.77
5999 8328 1.458588 GCAGGTTTTCCCACCCCAA 60.459 57.895 0.00 0.00 41.86 4.12
6000 8329 2.200092 GCAGGTTTTCCCACCCCA 59.800 61.111 0.00 0.00 41.86 4.96
6001 8330 2.603473 GGCAGGTTTTCCCACCCC 60.603 66.667 0.00 0.00 41.86 4.95
6002 8331 2.603473 GGGCAGGTTTTCCCACCC 60.603 66.667 0.00 0.00 44.83 4.61
6003 8332 2.781431 ATCGGGCAGGTTTTCCCACC 62.781 60.000 0.00 0.00 42.75 4.61
6004 8333 1.304134 ATCGGGCAGGTTTTCCCAC 60.304 57.895 0.00 0.00 42.75 4.61
6005 8334 1.001393 GATCGGGCAGGTTTTCCCA 60.001 57.895 0.00 0.00 42.75 4.37
6006 8335 0.610785 TTGATCGGGCAGGTTTTCCC 60.611 55.000 0.00 0.00 41.86 3.97
6007 8336 1.067846 GTTTGATCGGGCAGGTTTTCC 60.068 52.381 0.00 0.00 41.05 3.13
6008 8337 1.611491 TGTTTGATCGGGCAGGTTTTC 59.389 47.619 0.00 0.00 0.00 2.29
6009 8338 1.339929 GTGTTTGATCGGGCAGGTTTT 59.660 47.619 0.00 0.00 0.00 2.43
6010 8339 0.958822 GTGTTTGATCGGGCAGGTTT 59.041 50.000 0.00 0.00 0.00 3.27
6011 8340 0.893727 GGTGTTTGATCGGGCAGGTT 60.894 55.000 0.00 0.00 0.00 3.50
6012 8341 1.303317 GGTGTTTGATCGGGCAGGT 60.303 57.895 0.00 0.00 0.00 4.00
6013 8342 2.398554 CGGTGTTTGATCGGGCAGG 61.399 63.158 0.00 0.00 0.00 4.85
6014 8343 3.039202 GCGGTGTTTGATCGGGCAG 62.039 63.158 0.00 0.00 0.00 4.85
6015 8344 3.053291 GCGGTGTTTGATCGGGCA 61.053 61.111 0.00 0.00 0.00 5.36
6016 8345 2.322999 GATGCGGTGTTTGATCGGGC 62.323 60.000 0.00 0.00 0.00 6.13
6017 8346 1.714899 GGATGCGGTGTTTGATCGGG 61.715 60.000 0.00 0.00 0.00 5.14
6018 8347 1.721487 GGATGCGGTGTTTGATCGG 59.279 57.895 0.00 0.00 0.00 4.18
6019 8348 1.348250 CGGATGCGGTGTTTGATCG 59.652 57.895 0.00 0.00 0.00 3.69
6020 8349 1.062525 GCGGATGCGGTGTTTGATC 59.937 57.895 9.20 0.00 0.00 2.92
6021 8350 3.187058 GCGGATGCGGTGTTTGAT 58.813 55.556 9.20 0.00 0.00 2.57
6035 8364 4.524318 ATTACAGGTCGCCCGCGG 62.524 66.667 21.04 21.04 40.25 6.46
6036 8365 1.641123 AAAATTACAGGTCGCCCGCG 61.641 55.000 0.00 0.00 41.35 6.46
6037 8366 0.524414 AAAAATTACAGGTCGCCCGC 59.476 50.000 0.00 0.00 35.12 6.13
6062 8391 4.536687 GATCTTTTGCCGCGCCCG 62.537 66.667 0.00 0.00 0.00 6.13
6063 8392 3.113386 GAGATCTTTTGCCGCGCCC 62.113 63.158 0.00 0.00 0.00 6.13
6064 8393 2.405191 GAGATCTTTTGCCGCGCC 59.595 61.111 0.00 0.00 0.00 6.53
6065 8394 2.405191 GGAGATCTTTTGCCGCGC 59.595 61.111 0.00 0.00 0.00 6.86
6066 8395 2.472909 GGGGAGATCTTTTGCCGCG 61.473 63.158 0.00 0.00 0.00 6.46
6067 8396 2.121538 GGGGGAGATCTTTTGCCGC 61.122 63.158 0.00 1.38 32.25 6.53
6068 8397 1.819632 CGGGGGAGATCTTTTGCCG 60.820 63.158 0.00 0.00 0.00 5.69
6069 8398 0.748367 GTCGGGGGAGATCTTTTGCC 60.748 60.000 0.00 0.00 0.00 4.52
6070 8399 0.748367 GGTCGGGGGAGATCTTTTGC 60.748 60.000 0.00 0.00 0.00 3.68
6071 8400 0.912486 AGGTCGGGGGAGATCTTTTG 59.088 55.000 0.00 0.00 0.00 2.44
6072 8401 1.205055 GAGGTCGGGGGAGATCTTTT 58.795 55.000 0.00 0.00 30.54 2.27
6073 8402 0.340208 AGAGGTCGGGGGAGATCTTT 59.660 55.000 0.00 0.00 30.54 2.52
6074 8403 1.146152 CTAGAGGTCGGGGGAGATCTT 59.854 57.143 0.00 0.00 30.54 2.40
6075 8404 0.774908 CTAGAGGTCGGGGGAGATCT 59.225 60.000 0.00 0.00 33.62 2.75
6076 8405 0.772384 TCTAGAGGTCGGGGGAGATC 59.228 60.000 0.00 0.00 0.00 2.75
6077 8406 1.462426 ATCTAGAGGTCGGGGGAGAT 58.538 55.000 0.00 0.00 0.00 2.75
6078 8407 1.145325 GAATCTAGAGGTCGGGGGAGA 59.855 57.143 0.00 0.00 0.00 3.71
6079 8408 1.133450 TGAATCTAGAGGTCGGGGGAG 60.133 57.143 0.00 0.00 0.00 4.30
6080 8409 0.931468 TGAATCTAGAGGTCGGGGGA 59.069 55.000 0.00 0.00 0.00 4.81
6081 8410 1.620819 CATGAATCTAGAGGTCGGGGG 59.379 57.143 0.00 0.00 0.00 5.40
6082 8411 1.620819 CCATGAATCTAGAGGTCGGGG 59.379 57.143 0.00 0.75 0.00 5.73
6083 8412 1.620819 CCCATGAATCTAGAGGTCGGG 59.379 57.143 0.00 0.64 0.00 5.14
6084 8413 1.001406 GCCCATGAATCTAGAGGTCGG 59.999 57.143 0.00 0.00 0.00 4.79
6085 8414 1.967066 AGCCCATGAATCTAGAGGTCG 59.033 52.381 0.00 0.00 0.00 4.79
6086 8415 2.038295 CCAGCCCATGAATCTAGAGGTC 59.962 54.545 0.00 0.00 0.00 3.85
6087 8416 2.053244 CCAGCCCATGAATCTAGAGGT 58.947 52.381 0.00 0.00 0.00 3.85
6088 8417 1.350351 CCCAGCCCATGAATCTAGAGG 59.650 57.143 0.00 0.00 0.00 3.69
6089 8418 2.302445 CTCCCAGCCCATGAATCTAGAG 59.698 54.545 0.00 0.00 0.00 2.43
6090 8419 2.333069 CTCCCAGCCCATGAATCTAGA 58.667 52.381 0.00 0.00 0.00 2.43
6091 8420 1.350351 CCTCCCAGCCCATGAATCTAG 59.650 57.143 0.00 0.00 0.00 2.43
6092 8421 1.061424 TCCTCCCAGCCCATGAATCTA 60.061 52.381 0.00 0.00 0.00 1.98
6093 8422 0.327867 TCCTCCCAGCCCATGAATCT 60.328 55.000 0.00 0.00 0.00 2.40
6094 8423 0.179006 GTCCTCCCAGCCCATGAATC 60.179 60.000 0.00 0.00 0.00 2.52
6095 8424 1.925888 GTCCTCCCAGCCCATGAAT 59.074 57.895 0.00 0.00 0.00 2.57
6096 8425 2.669133 CGTCCTCCCAGCCCATGAA 61.669 63.158 0.00 0.00 0.00 2.57
6097 8426 3.083349 CGTCCTCCCAGCCCATGA 61.083 66.667 0.00 0.00 0.00 3.07
6098 8427 3.083349 TCGTCCTCCCAGCCCATG 61.083 66.667 0.00 0.00 0.00 3.66
6099 8428 3.083997 GTCGTCCTCCCAGCCCAT 61.084 66.667 0.00 0.00 0.00 4.00
6104 8433 3.141488 CTCGGGTCGTCCTCCCAG 61.141 72.222 0.00 0.00 44.81 4.45
6107 8436 3.519930 GAGCTCGGGTCGTCCTCC 61.520 72.222 0.00 0.00 0.00 4.30
6108 8437 3.878519 CGAGCTCGGGTCGTCCTC 61.879 72.222 28.40 0.00 46.41 3.71
6118 8447 3.686045 GGATAGGGGCCGAGCTCG 61.686 72.222 29.06 29.06 39.44 5.03
6126 8455 4.671569 CTCGCTGCGGATAGGGGC 62.672 72.222 23.03 0.00 0.00 5.80
6127 8456 1.821061 AATCTCGCTGCGGATAGGGG 61.821 60.000 23.03 4.37 0.00 4.79
6128 8457 0.034059 AAATCTCGCTGCGGATAGGG 59.966 55.000 23.03 6.04 0.00 3.53
6129 8458 1.143305 CAAATCTCGCTGCGGATAGG 58.857 55.000 23.03 13.87 0.00 2.57
6130 8459 1.143305 CCAAATCTCGCTGCGGATAG 58.857 55.000 23.03 12.49 0.00 2.08
6131 8460 0.880278 GCCAAATCTCGCTGCGGATA 60.880 55.000 23.03 8.25 0.00 2.59
6132 8461 2.182842 GCCAAATCTCGCTGCGGAT 61.183 57.895 23.03 19.24 0.00 4.18
6133 8462 2.819595 GCCAAATCTCGCTGCGGA 60.820 61.111 23.03 17.84 0.00 5.54
6134 8463 4.228097 CGCCAAATCTCGCTGCGG 62.228 66.667 23.03 12.92 41.42 5.69
6135 8464 4.228097 CCGCCAAATCTCGCTGCG 62.228 66.667 17.25 17.25 44.47 5.18
6136 8465 3.880846 CCCGCCAAATCTCGCTGC 61.881 66.667 0.00 0.00 0.00 5.25
6137 8466 2.125147 TCCCGCCAAATCTCGCTG 60.125 61.111 0.00 0.00 0.00 5.18
6138 8467 2.187946 CTCCCGCCAAATCTCGCT 59.812 61.111 0.00 0.00 0.00 4.93
6139 8468 2.897350 CCTCCCGCCAAATCTCGC 60.897 66.667 0.00 0.00 0.00 5.03
6140 8469 2.203070 CCCTCCCGCCAAATCTCG 60.203 66.667 0.00 0.00 0.00 4.04
6141 8470 1.153147 GTCCCTCCCGCCAAATCTC 60.153 63.158 0.00 0.00 0.00 2.75
6142 8471 1.281925 ATGTCCCTCCCGCCAAATCT 61.282 55.000 0.00 0.00 0.00 2.40
6143 8472 0.395724 AATGTCCCTCCCGCCAAATC 60.396 55.000 0.00 0.00 0.00 2.17
6144 8473 0.041090 AAATGTCCCTCCCGCCAAAT 59.959 50.000 0.00 0.00 0.00 2.32
6145 8474 0.610785 GAAATGTCCCTCCCGCCAAA 60.611 55.000 0.00 0.00 0.00 3.28
6146 8475 1.001393 GAAATGTCCCTCCCGCCAA 60.001 57.895 0.00 0.00 0.00 4.52
6147 8476 2.674754 GAAATGTCCCTCCCGCCA 59.325 61.111 0.00 0.00 0.00 5.69
6148 8477 2.124278 GGAAATGTCCCTCCCGCC 60.124 66.667 0.00 0.00 38.08 6.13
6149 8478 2.513897 CGGAAATGTCCCTCCCGC 60.514 66.667 0.00 0.00 41.44 6.13
6150 8479 2.513897 GCGGAAATGTCCCTCCCG 60.514 66.667 0.00 0.00 41.44 5.14
6151 8480 2.513897 CGCGGAAATGTCCCTCCC 60.514 66.667 0.00 0.00 41.44 4.30
6152 8481 2.106683 CACGCGGAAATGTCCCTCC 61.107 63.158 12.47 0.00 41.44 4.30
6153 8482 2.106683 CCACGCGGAAATGTCCCTC 61.107 63.158 12.47 0.00 41.44 4.30
6154 8483 2.046314 CCACGCGGAAATGTCCCT 60.046 61.111 12.47 0.00 41.44 4.20
6155 8484 3.810896 GCCACGCGGAAATGTCCC 61.811 66.667 12.47 0.00 41.44 4.46
6156 8485 3.810896 GGCCACGCGGAAATGTCC 61.811 66.667 12.47 0.00 41.01 4.02
6157 8486 4.160635 CGGCCACGCGGAAATGTC 62.161 66.667 12.47 0.00 0.00 3.06
6159 8488 3.661025 GAACGGCCACGCGGAAATG 62.661 63.158 12.47 0.00 46.04 2.32
6160 8489 3.428282 GAACGGCCACGCGGAAAT 61.428 61.111 12.47 0.00 46.04 2.17
6185 8514 4.047125 AATGGTGGCGGAGGGTGG 62.047 66.667 0.00 0.00 0.00 4.61
6186 8515 2.751436 CAATGGTGGCGGAGGGTG 60.751 66.667 0.00 0.00 0.00 4.61
6187 8516 4.740822 GCAATGGTGGCGGAGGGT 62.741 66.667 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.