Multiple sequence alignment - TraesCS5D01G308700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G308700 chr5D 100.000 4203 0 0 1993 6195 405442711 405438509 0.000000e+00 7762.0
1 TraesCS5D01G308700 chr5D 100.000 1639 0 0 1 1639 405444703 405443065 0.000000e+00 3027.0
2 TraesCS5D01G308700 chr5D 90.355 1690 123 15 2020 3698 405972647 405970987 0.000000e+00 2182.0
3 TraesCS5D01G308700 chr5D 89.976 1686 127 12 2024 3698 405782025 405780371 0.000000e+00 2139.0
4 TraesCS5D01G308700 chr5D 89.303 1692 135 16 2020 3697 405918648 405916989 0.000000e+00 2080.0
5 TraesCS5D01G308700 chr5D 89.363 1664 115 13 2020 3669 405860292 405858677 0.000000e+00 2036.0
6 TraesCS5D01G308700 chr5D 89.363 1664 115 13 2020 3669 405891899 405890284 0.000000e+00 2036.0
7 TraesCS5D01G308700 chr5D 89.398 1660 115 12 2023 3669 405824715 405823104 0.000000e+00 2034.0
8 TraesCS5D01G308700 chr5D 88.047 1690 160 16 2023 3698 405624386 405622725 0.000000e+00 1964.0
9 TraesCS5D01G308700 chr5D 90.928 1455 96 13 2248 3698 405810808 405809386 0.000000e+00 1923.0
10 TraesCS5D01G308700 chr5D 90.722 1455 98 13 2248 3698 405846648 405845227 0.000000e+00 1905.0
11 TraesCS5D01G308700 chr5D 92.133 1233 78 7 2466 3698 405881982 405880769 0.000000e+00 1722.0
12 TraesCS5D01G308700 chr5D 90.532 1109 76 13 2608 3715 405551752 405550672 0.000000e+00 1439.0
13 TraesCS5D01G308700 chr5D 90.832 938 66 9 2763 3698 405475791 405474872 0.000000e+00 1238.0
14 TraesCS5D01G308700 chr5D 89.723 866 69 7 2835 3698 405561159 405560312 0.000000e+00 1088.0
15 TraesCS5D01G308700 chr5D 87.576 660 58 7 2020 2667 405476434 405475787 0.000000e+00 743.0
16 TraesCS5D01G308700 chr5D 81.886 668 80 22 816 1474 405564356 405563721 5.500000e-145 525.0
17 TraesCS5D01G308700 chr5D 81.747 641 81 20 836 1469 405478102 405477491 2.580000e-138 503.0
18 TraesCS5D01G308700 chr5D 90.786 369 22 5 2023 2380 405863658 405863291 3.360000e-132 483.0
19 TraesCS5D01G308700 chr5D 82.383 579 74 17 907 1474 405958400 405957839 4.340000e-131 479.0
20 TraesCS5D01G308700 chr5D 90.515 369 23 5 2023 2380 405895278 405894911 1.560000e-130 477.0
21 TraesCS5D01G308700 chr5D 89.702 369 26 5 2023 2380 405828093 405827726 1.570000e-125 460.0
22 TraesCS5D01G308700 chr5D 78.709 573 91 20 917 1473 405526705 405526148 2.750000e-93 353.0
23 TraesCS5D01G308700 chr5D 90.837 251 11 4 2141 2380 405501728 405501479 5.990000e-85 326.0
24 TraesCS5D01G308700 chr5D 86.517 178 11 11 1471 1639 494068461 494068288 3.810000e-42 183.0
25 TraesCS5D01G308700 chr5D 100.000 28 0 0 1993 2020 493900279 493900306 1.100000e-02 52.8
26 TraesCS5D01G308700 chr5D 100.000 28 0 0 1993 2020 494068141 494068114 1.100000e-02 52.8
27 TraesCS5D01G308700 chr5A 95.975 4199 123 23 2013 6195 508869976 508874144 0.000000e+00 6776.0
28 TraesCS5D01G308700 chr5A 89.841 1693 132 17 2020 3698 511346840 511345174 0.000000e+00 2137.0
29 TraesCS5D01G308700 chr5A 89.633 1688 135 17 2020 3693 511403147 511401486 0.000000e+00 2111.0
30 TraesCS5D01G308700 chr5A 88.493 1347 129 13 2023 3358 511421589 511420258 0.000000e+00 1605.0
31 TraesCS5D01G308700 chr5A 91.704 663 42 10 816 1474 508869170 508869823 0.000000e+00 907.0
32 TraesCS5D01G308700 chr5A 82.897 573 77 13 908 1472 511384377 511383818 4.310000e-136 496.0
33 TraesCS5D01G308700 chr5A 80.245 653 90 17 828 1474 511404791 511404172 7.320000e-124 455.0
34 TraesCS5D01G308700 chr5A 89.160 369 29 4 2023 2380 511350112 511349744 3.410000e-122 449.0
35 TraesCS5D01G308700 chr5A 81.117 376 60 8 1103 1474 511490892 511490524 2.180000e-74 291.0
36 TraesCS5D01G308700 chr5A 94.737 133 3 2 1 130 545522317 545522186 2.930000e-48 204.0
37 TraesCS5D01G308700 chr5B 96.260 3957 113 12 2242 6193 486487168 486483242 0.000000e+00 6455.0
38 TraesCS5D01G308700 chr5B 91.158 475 14 8 984 1449 486487791 486487336 2.450000e-173 619.0
39 TraesCS5D01G308700 chrUn 86.723 708 83 8 127 825 31840180 31839475 0.000000e+00 776.0
40 TraesCS5D01G308700 chrUn 86.723 708 83 8 127 825 31854714 31854009 0.000000e+00 776.0
41 TraesCS5D01G308700 chrUn 86.582 708 84 8 127 825 31846032 31845327 0.000000e+00 771.0
42 TraesCS5D01G308700 chr2D 86.850 692 81 7 127 810 635579310 635579999 0.000000e+00 765.0
43 TraesCS5D01G308700 chr2D 86.261 706 88 6 127 825 635550497 635551200 0.000000e+00 758.0
44 TraesCS5D01G308700 chr2D 86.139 707 88 7 127 825 635484818 635485522 0.000000e+00 754.0
45 TraesCS5D01G308700 chr2D 86.182 702 87 7 132 825 635502165 635502864 0.000000e+00 750.0
46 TraesCS5D01G308700 chr2D 85.997 707 89 7 127 825 635518091 635518795 0.000000e+00 749.0
47 TraesCS5D01G308700 chr3B 86.580 693 78 12 132 817 341231345 341230661 0.000000e+00 750.0
48 TraesCS5D01G308700 chr2A 95.385 130 2 2 1 127 534654490 534654618 2.930000e-48 204.0
49 TraesCS5D01G308700 chr2A 86.932 176 10 6 1471 1638 606673496 606673666 1.060000e-42 185.0
50 TraesCS5D01G308700 chr6D 94.574 129 3 2 1 126 215604460 215604333 4.900000e-46 196.0
51 TraesCS5D01G308700 chr6D 84.615 117 10 7 1531 1639 276668708 276668592 6.570000e-20 110.0
52 TraesCS5D01G308700 chr4D 94.574 129 3 2 1 126 379038283 379038410 4.900000e-46 196.0
53 TraesCS5D01G308700 chr4D 92.029 138 7 2 1 135 42441757 42441893 2.280000e-44 191.0
54 TraesCS5D01G308700 chr3D 94.574 129 3 2 1 126 97934868 97934741 4.900000e-46 196.0
55 TraesCS5D01G308700 chr1D 94.574 129 3 2 1 126 326181247 326181374 4.900000e-46 196.0
56 TraesCS5D01G308700 chr1D 93.284 134 5 2 1 131 39876531 39876399 1.760000e-45 195.0
57 TraesCS5D01G308700 chr7A 90.728 151 7 5 1 147 215949784 215949931 1.760000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G308700 chr5D 405438509 405444703 6194 True 5394.5 7762 100.000000 1 6195 2 chr5D.!!$R12 6194
1 TraesCS5D01G308700 chr5D 405970987 405972647 1660 True 2182.0 2182 90.355000 2020 3698 1 chr5D.!!$R11 1678
2 TraesCS5D01G308700 chr5D 405780371 405782025 1654 True 2139.0 2139 89.976000 2024 3698 1 chr5D.!!$R5 1674
3 TraesCS5D01G308700 chr5D 405916989 405918648 1659 True 2080.0 2080 89.303000 2020 3697 1 chr5D.!!$R9 1677
4 TraesCS5D01G308700 chr5D 405622725 405624386 1661 True 1964.0 1964 88.047000 2023 3698 1 chr5D.!!$R4 1675
5 TraesCS5D01G308700 chr5D 405809386 405810808 1422 True 1923.0 1923 90.928000 2248 3698 1 chr5D.!!$R6 1450
6 TraesCS5D01G308700 chr5D 405845227 405846648 1421 True 1905.0 1905 90.722000 2248 3698 1 chr5D.!!$R7 1450
7 TraesCS5D01G308700 chr5D 405880769 405881982 1213 True 1722.0 1722 92.133000 2466 3698 1 chr5D.!!$R8 1232
8 TraesCS5D01G308700 chr5D 405550672 405551752 1080 True 1439.0 1439 90.532000 2608 3715 1 chr5D.!!$R3 1107
9 TraesCS5D01G308700 chr5D 405858677 405863658 4981 True 1259.5 2036 90.074500 2020 3669 2 chr5D.!!$R16 1649
10 TraesCS5D01G308700 chr5D 405890284 405895278 4994 True 1256.5 2036 89.939000 2020 3669 2 chr5D.!!$R17 1649
11 TraesCS5D01G308700 chr5D 405823104 405828093 4989 True 1247.0 2034 89.550000 2023 3669 2 chr5D.!!$R15 1646
12 TraesCS5D01G308700 chr5D 405474872 405478102 3230 True 828.0 1238 86.718333 836 3698 3 chr5D.!!$R13 2862
13 TraesCS5D01G308700 chr5D 405560312 405564356 4044 True 806.5 1088 85.804500 816 3698 2 chr5D.!!$R14 2882
14 TraesCS5D01G308700 chr5D 405957839 405958400 561 True 479.0 479 82.383000 907 1474 1 chr5D.!!$R10 567
15 TraesCS5D01G308700 chr5D 405526148 405526705 557 True 353.0 353 78.709000 917 1473 1 chr5D.!!$R2 556
16 TraesCS5D01G308700 chr5A 508869170 508874144 4974 False 3841.5 6776 93.839500 816 6195 2 chr5A.!!$F1 5379
17 TraesCS5D01G308700 chr5A 511420258 511421589 1331 True 1605.0 1605 88.493000 2023 3358 1 chr5A.!!$R2 1335
18 TraesCS5D01G308700 chr5A 511345174 511350112 4938 True 1293.0 2137 89.500500 2020 3698 2 chr5A.!!$R5 1678
19 TraesCS5D01G308700 chr5A 511401486 511404791 3305 True 1283.0 2111 84.939000 828 3693 2 chr5A.!!$R6 2865
20 TraesCS5D01G308700 chr5A 511383818 511384377 559 True 496.0 496 82.897000 908 1472 1 chr5A.!!$R1 564
21 TraesCS5D01G308700 chr5B 486483242 486487791 4549 True 3537.0 6455 93.709000 984 6193 2 chr5B.!!$R1 5209
22 TraesCS5D01G308700 chrUn 31839475 31840180 705 True 776.0 776 86.723000 127 825 1 chrUn.!!$R1 698
23 TraesCS5D01G308700 chrUn 31854009 31854714 705 True 776.0 776 86.723000 127 825 1 chrUn.!!$R3 698
24 TraesCS5D01G308700 chrUn 31845327 31846032 705 True 771.0 771 86.582000 127 825 1 chrUn.!!$R2 698
25 TraesCS5D01G308700 chr2D 635579310 635579999 689 False 765.0 765 86.850000 127 810 1 chr2D.!!$F5 683
26 TraesCS5D01G308700 chr2D 635550497 635551200 703 False 758.0 758 86.261000 127 825 1 chr2D.!!$F4 698
27 TraesCS5D01G308700 chr2D 635484818 635485522 704 False 754.0 754 86.139000 127 825 1 chr2D.!!$F1 698
28 TraesCS5D01G308700 chr2D 635502165 635502864 699 False 750.0 750 86.182000 132 825 1 chr2D.!!$F2 693
29 TraesCS5D01G308700 chr2D 635518091 635518795 704 False 749.0 749 85.997000 127 825 1 chr2D.!!$F3 698
30 TraesCS5D01G308700 chr3B 341230661 341231345 684 True 750.0 750 86.580000 132 817 1 chr3B.!!$R1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
805 808 0.247460 GCTGGGAATGGGTTGAAAGC 59.753 55.0 0.00 0.0 0.00 3.51 F
1592 1620 0.047176 AGAGAGAGAGGAGAGGGGGA 59.953 60.0 0.00 0.0 0.00 4.81 F
1595 1623 0.106217 GAGAGAGGAGAGGGGGAGTG 60.106 65.0 0.00 0.0 0.00 3.51 F
2420 3882 0.401738 TGCTCTAAGCTGTGGCCTTT 59.598 50.0 3.32 0.0 42.97 3.11 F
3578 5771 0.964358 GCACCTGAAGCTGGCTCATT 60.964 55.0 0.00 0.0 0.00 2.57 F
3752 5949 0.608035 CAGGGCACGGTACACCAAAT 60.608 55.0 0.00 0.0 35.14 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 3567 0.321671 CTGAAGGAAACAGCTCCCGA 59.678 55.000 0.00 0.0 35.95 5.14 R
2399 3861 0.322008 AGGCCACAGCTTAGAGCAAC 60.322 55.000 5.01 0.0 45.56 4.17 R
3037 4527 0.678048 AACCCGCAGATCAAAGAGGC 60.678 55.000 0.00 0.0 0.00 4.70 R
3752 5949 0.038166 GAAGTGCCCAAGGGATGACA 59.962 55.000 9.92 0.0 37.50 3.58 R
4414 6611 1.325355 CTGCTATTTGGCTCATGGGG 58.675 55.000 0.00 0.0 0.00 4.96 R
5636 7836 1.065551 GATCCGCTTAATTGCACCCAC 59.934 52.381 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.460263 TGTAGGTTGATTGCTTGACTTGT 58.540 39.130 0.00 0.00 0.00 3.16
23 24 3.996150 AGGTTGATTGCTTGACTTGTG 57.004 42.857 0.00 0.00 0.00 3.33
24 25 2.035066 AGGTTGATTGCTTGACTTGTGC 59.965 45.455 0.00 0.00 0.00 4.57
26 27 3.253188 GGTTGATTGCTTGACTTGTGCTA 59.747 43.478 0.00 0.00 0.00 3.49
27 28 4.261572 GGTTGATTGCTTGACTTGTGCTAA 60.262 41.667 0.00 0.00 0.00 3.09
29 30 4.136796 TGATTGCTTGACTTGTGCTAAGT 58.863 39.130 6.63 6.63 0.00 2.24
31 32 3.969117 TGCTTGACTTGTGCTAAGTTG 57.031 42.857 8.07 4.46 0.00 3.16
32 33 3.278574 TGCTTGACTTGTGCTAAGTTGT 58.721 40.909 8.07 0.00 0.00 3.32
33 34 3.694072 TGCTTGACTTGTGCTAAGTTGTT 59.306 39.130 8.07 0.00 0.00 2.83
35 36 5.355630 TGCTTGACTTGTGCTAAGTTGTTAA 59.644 36.000 8.07 3.01 0.00 2.01
36 37 6.127869 TGCTTGACTTGTGCTAAGTTGTTAAA 60.128 34.615 8.07 0.63 0.00 1.52
37 38 6.750039 GCTTGACTTGTGCTAAGTTGTTAAAA 59.250 34.615 8.07 0.00 0.00 1.52
38 39 7.435192 GCTTGACTTGTGCTAAGTTGTTAAAAT 59.565 33.333 8.07 0.00 0.00 1.82
39 40 8.850454 TTGACTTGTGCTAAGTTGTTAAAATC 57.150 30.769 8.07 0.00 0.00 2.17
41 42 8.128582 TGACTTGTGCTAAGTTGTTAAAATCTG 58.871 33.333 8.07 0.00 0.00 2.90
43 44 5.768317 TGTGCTAAGTTGTTAAAATCTGGC 58.232 37.500 0.00 0.00 0.00 4.85
44 45 5.300539 TGTGCTAAGTTGTTAAAATCTGGCA 59.699 36.000 0.00 0.00 0.00 4.92
45 46 6.183360 TGTGCTAAGTTGTTAAAATCTGGCAA 60.183 34.615 6.33 0.00 0.00 4.52
46 47 6.363357 GTGCTAAGTTGTTAAAATCTGGCAAG 59.637 38.462 6.33 0.00 0.00 4.01
47 48 6.264292 TGCTAAGTTGTTAAAATCTGGCAAGA 59.736 34.615 0.00 0.00 36.69 3.02
48 49 6.582672 GCTAAGTTGTTAAAATCTGGCAAGAC 59.417 38.462 0.00 0.00 34.48 3.01
49 50 6.715347 AAGTTGTTAAAATCTGGCAAGACT 57.285 33.333 0.00 0.00 34.48 3.24
50 51 6.715347 AGTTGTTAAAATCTGGCAAGACTT 57.285 33.333 0.00 0.00 34.48 3.01
51 52 7.817418 AGTTGTTAAAATCTGGCAAGACTTA 57.183 32.000 0.00 0.00 34.48 2.24
52 53 8.232913 AGTTGTTAAAATCTGGCAAGACTTAA 57.767 30.769 0.00 0.00 34.48 1.85
53 54 8.691797 AGTTGTTAAAATCTGGCAAGACTTAAA 58.308 29.630 8.24 0.00 34.48 1.52
54 55 9.308318 GTTGTTAAAATCTGGCAAGACTTAAAA 57.692 29.630 8.24 2.35 34.48 1.52
58 59 7.967890 AAAATCTGGCAAGACTTAAAATTGG 57.032 32.000 0.00 0.00 34.48 3.16
60 61 4.735369 TCTGGCAAGACTTAAAATTGGGA 58.265 39.130 0.00 0.00 0.00 4.37
61 62 5.144100 TCTGGCAAGACTTAAAATTGGGAA 58.856 37.500 0.00 0.00 0.00 3.97
62 63 5.600484 TCTGGCAAGACTTAAAATTGGGAAA 59.400 36.000 0.00 0.00 0.00 3.13
64 65 6.653989 TGGCAAGACTTAAAATTGGGAAAAA 58.346 32.000 0.00 0.00 0.00 1.94
65 66 7.286313 TGGCAAGACTTAAAATTGGGAAAAAT 58.714 30.769 0.00 0.00 0.00 1.82
66 67 7.228308 TGGCAAGACTTAAAATTGGGAAAAATG 59.772 33.333 0.00 0.00 0.00 2.32
67 68 7.228507 GGCAAGACTTAAAATTGGGAAAAATGT 59.771 33.333 0.00 0.00 0.00 2.71
99 100 5.632034 ATTTGGTCTAGTCTAATCACCCC 57.368 43.478 0.00 0.00 0.00 4.95
100 101 3.042059 TGGTCTAGTCTAATCACCCCC 57.958 52.381 0.00 0.00 0.00 5.40
117 118 2.308690 CCCCCTCTAGACCTACTTTCG 58.691 57.143 0.00 0.00 0.00 3.46
118 119 2.091994 CCCCCTCTAGACCTACTTTCGA 60.092 54.545 0.00 0.00 0.00 3.71
119 120 3.436761 CCCCCTCTAGACCTACTTTCGAT 60.437 52.174 0.00 0.00 0.00 3.59
120 121 3.822167 CCCCTCTAGACCTACTTTCGATC 59.178 52.174 0.00 0.00 0.00 3.69
121 122 3.822167 CCCTCTAGACCTACTTTCGATCC 59.178 52.174 0.00 0.00 0.00 3.36
122 123 4.446600 CCCTCTAGACCTACTTTCGATCCT 60.447 50.000 0.00 0.00 0.00 3.24
123 124 5.221884 CCCTCTAGACCTACTTTCGATCCTA 60.222 48.000 0.00 0.00 0.00 2.94
124 125 5.702209 CCTCTAGACCTACTTTCGATCCTAC 59.298 48.000 0.00 0.00 0.00 3.18
125 126 6.244552 TCTAGACCTACTTTCGATCCTACA 57.755 41.667 0.00 0.00 0.00 2.74
130 131 7.288560 AGACCTACTTTCGATCCTACATTAGA 58.711 38.462 0.00 0.00 0.00 2.10
146 147 8.407064 CCTACATTAGAACAACTAGTCGAATCT 58.593 37.037 0.00 0.91 32.30 2.40
230 232 0.674269 GGGATGTTCCGGCGTTGTAA 60.674 55.000 6.01 0.00 37.43 2.41
247 249 0.584396 TAAACAAGCGGTGCAAGACG 59.416 50.000 0.00 0.00 0.00 4.18
303 305 1.572447 GTGCGCCGACAAGCTTTTA 59.428 52.632 4.18 0.00 0.00 1.52
312 314 0.961753 ACAAGCTTTTAGGCCAGCAC 59.038 50.000 14.66 0.00 38.61 4.40
384 386 3.275832 GATCCGAGCGGCTAGAGGC 62.276 68.421 11.90 0.00 40.90 4.70
509 512 2.254464 GGATCCGCTCCAAATCCGC 61.254 63.158 0.00 0.00 44.26 5.54
527 530 2.202824 CCGTCGGGAGCGCAAATA 60.203 61.111 11.47 0.00 34.06 1.40
534 537 0.679960 GGGAGCGCAAATAAGGTGGT 60.680 55.000 11.47 0.00 0.00 4.16
555 558 3.793888 GGTTGGGTAGCTCGGGGG 61.794 72.222 0.00 0.00 0.00 5.40
569 572 4.078516 GGGGGTCGAGGGAACACG 62.079 72.222 0.00 0.00 46.29 4.49
570 573 4.078516 GGGGTCGAGGGAACACGG 62.079 72.222 0.00 0.00 44.93 4.94
571 574 4.078516 GGGTCGAGGGAACACGGG 62.079 72.222 0.00 0.00 44.93 5.28
572 575 2.993264 GGTCGAGGGAACACGGGA 60.993 66.667 0.00 0.00 44.93 5.14
573 576 2.356780 GGTCGAGGGAACACGGGAT 61.357 63.158 0.00 0.00 44.93 3.85
574 577 1.153628 GTCGAGGGAACACGGGATG 60.154 63.158 0.00 0.00 44.93 3.51
576 579 2.511600 GAGGGAACACGGGATGCG 60.512 66.667 0.00 0.00 0.00 4.73
578 581 2.818274 GGGAACACGGGATGCGTC 60.818 66.667 0.00 0.00 0.00 5.19
579 582 2.047655 GGAACACGGGATGCGTCA 60.048 61.111 8.47 0.00 0.00 4.35
582 585 3.605749 AACACGGGATGCGTCAGGG 62.606 63.158 8.47 4.79 0.00 4.45
583 586 4.838152 CACGGGATGCGTCAGGGG 62.838 72.222 8.47 0.00 0.00 4.79
585 588 4.096003 CGGGATGCGTCAGGGGTT 62.096 66.667 8.47 0.00 0.00 4.11
586 589 2.438434 GGGATGCGTCAGGGGTTG 60.438 66.667 8.47 0.00 0.00 3.77
587 590 2.438434 GGATGCGTCAGGGGTTGG 60.438 66.667 8.47 0.00 0.00 3.77
589 592 3.995506 GATGCGTCAGGGGTTGGGG 62.996 68.421 0.00 0.00 0.00 4.96
593 596 3.909651 GTCAGGGGTTGGGGCCAA 61.910 66.667 4.39 0.00 0.00 4.52
594 597 2.868566 TCAGGGGTTGGGGCCAAT 60.869 61.111 4.39 0.00 38.28 3.16
596 599 4.720680 AGGGGTTGGGGCCAATGC 62.721 66.667 4.39 0.00 38.28 3.56
623 626 4.255126 CTGCACAACAGCAATGGC 57.745 55.556 0.00 0.00 45.13 4.40
624 627 1.731613 CTGCACAACAGCAATGGCG 60.732 57.895 0.00 0.00 45.13 5.69
643 646 2.438614 CAGCGACGAGGGAGGAGA 60.439 66.667 0.00 0.00 0.00 3.71
644 647 2.124487 AGCGACGAGGGAGGAGAG 60.124 66.667 0.00 0.00 0.00 3.20
645 648 2.438795 GCGACGAGGGAGGAGAGT 60.439 66.667 0.00 0.00 0.00 3.24
647 650 2.115911 CGACGAGGGAGGAGAGTGG 61.116 68.421 0.00 0.00 0.00 4.00
648 651 2.363147 ACGAGGGAGGAGAGTGGC 60.363 66.667 0.00 0.00 0.00 5.01
649 652 3.522731 CGAGGGAGGAGAGTGGCG 61.523 72.222 0.00 0.00 0.00 5.69
650 653 3.151022 GAGGGAGGAGAGTGGCGG 61.151 72.222 0.00 0.00 0.00 6.13
651 654 3.966930 GAGGGAGGAGAGTGGCGGT 62.967 68.421 0.00 0.00 0.00 5.68
653 656 3.775654 GGAGGAGAGTGGCGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
655 658 3.302347 GAGGAGAGTGGCGGTGGTG 62.302 68.421 0.00 0.00 0.00 4.17
667 670 4.767255 GTGGTGCGGCTGGAGGAG 62.767 72.222 0.00 0.00 0.00 3.69
676 679 4.505970 CTGGAGGAGGGGGAGGGG 62.506 77.778 0.00 0.00 0.00 4.79
679 682 2.104921 GGAGGAGGGGGAGGGGATA 61.105 68.421 0.00 0.00 0.00 2.59
681 684 1.010351 AGGAGGGGGAGGGGATAGA 59.990 63.158 0.00 0.00 0.00 1.98
683 686 0.271005 GGAGGGGGAGGGGATAGAAA 59.729 60.000 0.00 0.00 0.00 2.52
684 687 1.346151 GGAGGGGGAGGGGATAGAAAA 60.346 57.143 0.00 0.00 0.00 2.29
685 688 2.499515 GAGGGGGAGGGGATAGAAAAA 58.500 52.381 0.00 0.00 0.00 1.94
686 689 2.443632 GAGGGGGAGGGGATAGAAAAAG 59.556 54.545 0.00 0.00 0.00 2.27
687 690 1.499438 GGGGGAGGGGATAGAAAAAGG 59.501 57.143 0.00 0.00 0.00 3.11
689 692 1.499438 GGGAGGGGATAGAAAAAGGGG 59.501 57.143 0.00 0.00 0.00 4.79
690 693 1.499438 GGAGGGGATAGAAAAAGGGGG 59.501 57.143 0.00 0.00 0.00 5.40
706 709 2.047560 GGGTTTGTCTCCCCGACG 60.048 66.667 0.00 0.00 45.87 5.12
729 732 4.512914 GCCAGGGAGGACATGGGC 62.513 72.222 0.00 0.00 41.22 5.36
730 733 3.016971 CCAGGGAGGACATGGGCA 61.017 66.667 0.00 0.00 41.22 5.36
731 734 2.593978 CAGGGAGGACATGGGCAG 59.406 66.667 0.00 0.00 0.00 4.85
733 736 4.512914 GGGAGGACATGGGCAGGC 62.513 72.222 0.00 0.00 0.00 4.85
734 737 4.864334 GGAGGACATGGGCAGGCG 62.864 72.222 0.00 0.00 0.00 5.52
769 772 2.659244 GTGTCCGTTCGACCGCAA 60.659 61.111 0.00 0.00 41.18 4.85
771 774 2.239124 TGTCCGTTCGACCGCAAAC 61.239 57.895 0.00 0.00 41.18 2.93
772 775 1.952635 GTCCGTTCGACCGCAAACT 60.953 57.895 0.00 0.00 35.23 2.66
775 778 1.487231 CGTTCGACCGCAAACTCAG 59.513 57.895 0.00 0.00 0.00 3.35
776 779 1.204312 GTTCGACCGCAAACTCAGC 59.796 57.895 0.00 0.00 0.00 4.26
777 780 1.959226 TTCGACCGCAAACTCAGCC 60.959 57.895 0.00 0.00 0.00 4.85
779 782 2.250939 CGACCGCAAACTCAGCCAA 61.251 57.895 0.00 0.00 0.00 4.52
780 783 1.781025 CGACCGCAAACTCAGCCAAA 61.781 55.000 0.00 0.00 0.00 3.28
781 784 0.317854 GACCGCAAACTCAGCCAAAC 60.318 55.000 0.00 0.00 0.00 2.93
782 785 0.751643 ACCGCAAACTCAGCCAAACT 60.752 50.000 0.00 0.00 0.00 2.66
793 796 4.617200 CCAAACTTGGGCTGGGAA 57.383 55.556 0.09 0.00 44.70 3.97
794 797 3.071671 CCAAACTTGGGCTGGGAAT 57.928 52.632 0.09 0.00 44.70 3.01
795 798 0.609662 CCAAACTTGGGCTGGGAATG 59.390 55.000 0.09 0.00 44.70 2.67
796 799 0.609662 CAAACTTGGGCTGGGAATGG 59.390 55.000 0.00 0.00 0.00 3.16
797 800 0.545071 AAACTTGGGCTGGGAATGGG 60.545 55.000 0.00 0.00 0.00 4.00
799 802 1.079073 CTTGGGCTGGGAATGGGTT 59.921 57.895 0.00 0.00 0.00 4.11
801 804 1.734420 TTGGGCTGGGAATGGGTTGA 61.734 55.000 0.00 0.00 0.00 3.18
803 806 0.544120 GGGCTGGGAATGGGTTGAAA 60.544 55.000 0.00 0.00 0.00 2.69
804 807 0.897621 GGCTGGGAATGGGTTGAAAG 59.102 55.000 0.00 0.00 0.00 2.62
805 808 0.247460 GCTGGGAATGGGTTGAAAGC 59.753 55.000 0.00 0.00 0.00 3.51
807 810 0.897863 TGGGAATGGGTTGAAAGCGG 60.898 55.000 0.00 0.00 0.00 5.52
810 813 1.243902 GAATGGGTTGAAAGCGGACA 58.756 50.000 0.00 0.00 0.00 4.02
811 814 1.611491 GAATGGGTTGAAAGCGGACAA 59.389 47.619 0.00 0.00 0.00 3.18
812 815 1.698506 ATGGGTTGAAAGCGGACAAA 58.301 45.000 0.00 0.00 0.00 2.83
813 816 1.475403 TGGGTTGAAAGCGGACAAAA 58.525 45.000 0.00 0.00 0.00 2.44
814 817 1.825474 TGGGTTGAAAGCGGACAAAAA 59.175 42.857 0.00 0.00 0.00 1.94
874 877 1.153958 GCGGACCGCGGTATATACC 60.154 63.158 34.36 26.12 44.55 2.73
944 957 1.076777 ATCACAGCCCAAATCCCCG 60.077 57.895 0.00 0.00 0.00 5.73
1407 1432 4.271816 CACTCGGATCCGCTCCCG 62.272 72.222 29.62 15.80 46.57 5.14
1416 1441 3.546543 CCGCTCCCGCCTTGGATA 61.547 66.667 0.00 0.00 42.00 2.59
1451 1479 2.512885 CTGCAGTGCGATGTGAATTTC 58.487 47.619 11.20 0.00 0.00 2.17
1453 1481 1.199789 GCAGTGCGATGTGAATTTCCA 59.800 47.619 0.00 0.00 0.00 3.53
1475 1503 2.558378 GTAATTAGGACTTCGGTGCCC 58.442 52.381 0.00 0.00 36.95 5.36
1477 1505 1.632965 ATTAGGACTTCGGTGCCCCC 61.633 60.000 0.00 0.00 36.95 5.40
1478 1506 3.549433 TAGGACTTCGGTGCCCCCA 62.549 63.158 0.00 0.00 36.95 4.96
1479 1507 4.717313 GGACTTCGGTGCCCCCAC 62.717 72.222 0.00 0.00 41.32 4.61
1488 1516 1.077625 GTGCCCCCACCCAACAATA 59.922 57.895 0.00 0.00 35.92 1.90
1492 1520 1.277842 GCCCCCACCCAACAATAAAAG 59.722 52.381 0.00 0.00 0.00 2.27
1494 1522 2.565391 CCCCCACCCAACAATAAAAGAC 59.435 50.000 0.00 0.00 0.00 3.01
1495 1523 3.235200 CCCCACCCAACAATAAAAGACA 58.765 45.455 0.00 0.00 0.00 3.41
1496 1524 3.643792 CCCCACCCAACAATAAAAGACAA 59.356 43.478 0.00 0.00 0.00 3.18
1497 1525 4.262420 CCCCACCCAACAATAAAAGACAAG 60.262 45.833 0.00 0.00 0.00 3.16
1498 1526 4.586841 CCCACCCAACAATAAAAGACAAGA 59.413 41.667 0.00 0.00 0.00 3.02
1502 1530 6.486657 CACCCAACAATAAAAGACAAGAGAGA 59.513 38.462 0.00 0.00 0.00 3.10
1503 1531 7.175641 CACCCAACAATAAAAGACAAGAGAGAT 59.824 37.037 0.00 0.00 0.00 2.75
1506 1534 8.449397 CCAACAATAAAAGACAAGAGAGATGAG 58.551 37.037 0.00 0.00 0.00 2.90
1507 1535 9.212641 CAACAATAAAAGACAAGAGAGATGAGA 57.787 33.333 0.00 0.00 0.00 3.27
1508 1536 9.434420 AACAATAAAAGACAAGAGAGATGAGAG 57.566 33.333 0.00 0.00 0.00 3.20
1509 1537 8.040132 ACAATAAAAGACAAGAGAGATGAGAGG 58.960 37.037 0.00 0.00 0.00 3.69
1511 1539 6.678568 AAAAGACAAGAGAGATGAGAGGAA 57.321 37.500 0.00 0.00 0.00 3.36
1513 1541 6.678568 AAGACAAGAGAGATGAGAGGAAAA 57.321 37.500 0.00 0.00 0.00 2.29
1516 1544 5.090139 ACAAGAGAGATGAGAGGAAAAGGA 58.910 41.667 0.00 0.00 0.00 3.36
1517 1545 5.187576 ACAAGAGAGATGAGAGGAAAAGGAG 59.812 44.000 0.00 0.00 0.00 3.69
1518 1546 4.289245 AGAGAGATGAGAGGAAAAGGAGG 58.711 47.826 0.00 0.00 0.00 4.30
1519 1547 3.383223 AGAGATGAGAGGAAAAGGAGGG 58.617 50.000 0.00 0.00 0.00 4.30
1520 1548 3.013417 AGAGATGAGAGGAAAAGGAGGGA 59.987 47.826 0.00 0.00 0.00 4.20
1521 1549 3.383223 AGATGAGAGGAAAAGGAGGGAG 58.617 50.000 0.00 0.00 0.00 4.30
1522 1550 3.013417 AGATGAGAGGAAAAGGAGGGAGA 59.987 47.826 0.00 0.00 0.00 3.71
1524 1552 3.110705 TGAGAGGAAAAGGAGGGAGATG 58.889 50.000 0.00 0.00 0.00 2.90
1527 1555 2.840651 GAGGAAAAGGAGGGAGATGACA 59.159 50.000 0.00 0.00 0.00 3.58
1528 1556 2.843113 AGGAAAAGGAGGGAGATGACAG 59.157 50.000 0.00 0.00 0.00 3.51
1529 1557 2.573915 GGAAAAGGAGGGAGATGACAGT 59.426 50.000 0.00 0.00 0.00 3.55
1533 1561 1.524482 GAGGGAGATGACAGTGGGC 59.476 63.158 0.00 0.00 0.00 5.36
1534 1562 2.187946 GGGAGATGACAGTGGGCG 59.812 66.667 0.00 0.00 0.00 6.13
1536 1564 1.142748 GGAGATGACAGTGGGCGAG 59.857 63.158 0.00 0.00 0.00 5.03
1537 1565 1.520342 GAGATGACAGTGGGCGAGC 60.520 63.158 0.00 0.00 0.00 5.03
1538 1566 1.954362 GAGATGACAGTGGGCGAGCT 61.954 60.000 0.00 0.00 0.00 4.09
1539 1567 1.812922 GATGACAGTGGGCGAGCTG 60.813 63.158 0.00 0.00 38.58 4.24
1541 1569 3.695606 GACAGTGGGCGAGCTGGA 61.696 66.667 0.00 0.00 37.07 3.86
1542 1570 3.655810 GACAGTGGGCGAGCTGGAG 62.656 68.421 0.00 0.00 37.07 3.86
1543 1571 4.463879 CAGTGGGCGAGCTGGAGG 62.464 72.222 0.00 0.00 0.00 4.30
1550 1578 3.200593 CGAGCTGGAGGCATGCAC 61.201 66.667 21.36 12.64 44.79 4.57
1551 1579 3.200593 GAGCTGGAGGCATGCACG 61.201 66.667 21.36 3.34 44.79 5.34
1552 1580 3.965539 GAGCTGGAGGCATGCACGT 62.966 63.158 21.36 2.61 44.79 4.49
1553 1581 3.807538 GCTGGAGGCATGCACGTG 61.808 66.667 21.36 12.28 41.35 4.49
1554 1582 3.129502 CTGGAGGCATGCACGTGG 61.130 66.667 21.36 1.27 0.00 4.94
1555 1583 4.720902 TGGAGGCATGCACGTGGG 62.721 66.667 21.36 0.00 0.00 4.61
1556 1584 4.722700 GGAGGCATGCACGTGGGT 62.723 66.667 21.36 0.00 0.00 4.51
1565 1593 4.579384 CACGTGGGTGGGCCTGTT 62.579 66.667 7.95 0.00 40.58 3.16
1568 1596 4.912395 GTGGGTGGGCCTGTTGCA 62.912 66.667 4.53 0.00 43.89 4.08
1571 1599 4.073200 GGTGGGCCTGTTGCATGC 62.073 66.667 11.82 11.82 43.89 4.06
1573 1601 2.523657 TGGGCCTGTTGCATGCAA 60.524 55.556 28.80 28.80 43.89 4.08
1575 1603 2.277591 GGGCCTGTTGCATGCAAGA 61.278 57.895 32.64 29.40 43.89 3.02
1577 1605 1.246056 GGCCTGTTGCATGCAAGAGA 61.246 55.000 42.90 25.84 46.28 3.10
1578 1606 0.170561 GCCTGTTGCATGCAAGAGAG 59.829 55.000 42.90 34.36 46.28 3.20
1579 1607 1.817357 CCTGTTGCATGCAAGAGAGA 58.183 50.000 42.90 20.20 46.28 3.10
1581 1609 2.614734 CCTGTTGCATGCAAGAGAGAGA 60.615 50.000 42.90 19.20 46.28 3.10
1582 1610 2.673862 CTGTTGCATGCAAGAGAGAGAG 59.326 50.000 40.26 21.40 46.28 3.20
1583 1611 2.008329 GTTGCATGCAAGAGAGAGAGG 58.992 52.381 32.64 0.00 36.52 3.69
1584 1612 1.565067 TGCATGCAAGAGAGAGAGGA 58.435 50.000 20.30 0.00 0.00 3.71
1585 1613 1.481363 TGCATGCAAGAGAGAGAGGAG 59.519 52.381 20.30 0.00 0.00 3.69
1588 1616 2.142356 TGCAAGAGAGAGAGGAGAGG 57.858 55.000 0.00 0.00 0.00 3.69
1589 1617 1.341877 TGCAAGAGAGAGAGGAGAGGG 60.342 57.143 0.00 0.00 0.00 4.30
1590 1618 2.028996 GCAAGAGAGAGAGGAGAGGGG 61.029 61.905 0.00 0.00 0.00 4.79
1591 1619 0.933700 AAGAGAGAGAGGAGAGGGGG 59.066 60.000 0.00 0.00 0.00 5.40
1592 1620 0.047176 AGAGAGAGAGGAGAGGGGGA 59.953 60.000 0.00 0.00 0.00 4.81
1593 1621 0.478507 GAGAGAGAGGAGAGGGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
1594 1622 0.254107 AGAGAGAGGAGAGGGGGAGT 60.254 60.000 0.00 0.00 0.00 3.85
1595 1623 0.106217 GAGAGAGGAGAGGGGGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
1602 1630 4.423209 GAGGGGGAGTGGGAGGCT 62.423 72.222 0.00 0.00 0.00 4.58
1603 1631 4.748798 AGGGGGAGTGGGAGGCTG 62.749 72.222 0.00 0.00 0.00 4.85
1609 1637 1.294780 GAGTGGGAGGCTGACAGTG 59.705 63.158 3.99 0.00 0.00 3.66
1612 1640 4.416738 GGGAGGCTGACAGTGGGC 62.417 72.222 3.99 0.00 0.00 5.36
1625 1653 3.947459 TGGGCCTGCTGCGTGTAA 61.947 61.111 4.53 0.00 42.61 2.41
1626 1654 2.671619 GGGCCTGCTGCGTGTAAA 60.672 61.111 0.84 0.00 42.61 2.01
1629 1657 1.091537 GGCCTGCTGCGTGTAAATAA 58.908 50.000 0.00 0.00 42.61 1.40
1631 1659 2.875933 GGCCTGCTGCGTGTAAATAATA 59.124 45.455 0.00 0.00 42.61 0.98
1633 1661 3.607078 GCCTGCTGCGTGTAAATAATAGC 60.607 47.826 0.00 0.00 0.00 2.97
1636 1664 2.661979 GCTGCGTGTAAATAATAGCGCC 60.662 50.000 2.29 0.00 43.54 6.53
1638 1666 1.136446 GCGTGTAAATAATAGCGCCGG 60.136 52.381 2.29 0.00 39.11 6.13
2013 2041 3.813724 GGGGGCTGGGTGGAGATG 61.814 72.222 0.00 0.00 0.00 2.90
2014 2042 4.512914 GGGGCTGGGTGGAGATGC 62.513 72.222 0.00 0.00 0.00 3.91
2016 2044 2.191641 GGCTGGGTGGAGATGCTC 59.808 66.667 0.00 0.00 0.00 4.26
2018 2046 1.050988 GGCTGGGTGGAGATGCTCTA 61.051 60.000 0.00 0.00 0.00 2.43
2019 2047 0.833287 GCTGGGTGGAGATGCTCTAA 59.167 55.000 0.00 0.00 0.00 2.10
2020 2048 1.210478 GCTGGGTGGAGATGCTCTAAA 59.790 52.381 0.00 0.00 0.00 1.85
2021 2049 2.744494 GCTGGGTGGAGATGCTCTAAAG 60.744 54.545 0.00 0.00 0.00 1.85
2158 3587 0.674895 CGGGAGCTGTTTCCTTCAGG 60.675 60.000 0.00 0.00 37.40 3.86
2358 3807 4.162131 ACAGTCAAATTCTGGCCAAGTTTT 59.838 37.500 7.01 3.64 37.25 2.43
2383 3845 4.042524 GCTCAAGCGCGCTTAAAC 57.957 55.556 42.41 29.59 34.50 2.01
2384 3846 1.512098 GCTCAAGCGCGCTTAAACC 60.512 57.895 42.41 26.70 34.50 3.27
2385 3847 1.225745 CTCAAGCGCGCTTAAACCG 60.226 57.895 42.41 29.94 34.50 4.44
2420 3882 0.401738 TGCTCTAAGCTGTGGCCTTT 59.598 50.000 3.32 0.00 42.97 3.11
2720 4188 5.478407 TCTGCATACATCGACTTTGAGAAA 58.522 37.500 0.00 0.00 0.00 2.52
3006 4496 2.426522 GACATGCAAAGGTACTGCTGA 58.573 47.619 7.07 0.00 40.86 4.26
3037 4527 2.571212 TGGTTCTTGCTGTTGTACTGG 58.429 47.619 0.00 0.00 0.00 4.00
3351 4842 2.816087 TCATGTTCTTTTCTCCAGCAGC 59.184 45.455 0.00 0.00 0.00 5.25
3578 5771 0.964358 GCACCTGAAGCTGGCTCATT 60.964 55.000 0.00 0.00 0.00 2.57
3752 5949 0.608035 CAGGGCACGGTACACCAAAT 60.608 55.000 0.00 0.00 35.14 2.32
3780 5977 4.329545 GGGCACTTCTGGCGTGGA 62.330 66.667 0.00 0.00 44.10 4.02
3918 6115 8.887036 TGTATAGTTTACTGACCTTGCATATG 57.113 34.615 0.00 0.00 0.00 1.78
4372 6569 0.987294 AGGATGCTGATTATCGGGGG 59.013 55.000 2.99 0.00 0.00 5.40
4414 6611 4.193826 TCAGTCAGGTGTATCAAGCTTC 57.806 45.455 0.00 0.00 0.00 3.86
4469 6666 6.098838 ACAGTCACTCAAGCCTGATATTATGA 59.901 38.462 0.00 0.00 0.00 2.15
4480 6677 5.355350 GCCTGATATTATGACCACATTAGCC 59.645 44.000 0.00 0.00 37.87 3.93
4505 6702 3.765511 ACTTATGCCAAATGTGCAGTCAT 59.234 39.130 0.00 0.00 42.92 3.06
4711 6910 0.397535 CAAGCTATGGGGGCATGGTT 60.398 55.000 0.00 0.00 0.00 3.67
4871 7070 6.811253 ATTACGCTCCTCAAAACAATTACA 57.189 33.333 0.00 0.00 0.00 2.41
4937 7136 1.305887 AACCTACCAGTCCCTCCCG 60.306 63.158 0.00 0.00 0.00 5.14
5233 7432 1.002544 GTAAGCTCACCTCTGCACCTT 59.997 52.381 0.00 0.00 0.00 3.50
5318 7517 5.294552 GCTAACTTTAGAGGATCAAACGCAT 59.705 40.000 0.00 0.00 37.82 4.73
5352 7551 7.227512 CGGATAAATCAAGGAGCATAAGTTTCT 59.772 37.037 0.00 0.00 0.00 2.52
5503 7703 6.153000 ACAGAAGTCACACCTAGTATAACCTG 59.847 42.308 0.00 0.00 0.00 4.00
5507 7707 7.349412 AGTCACACCTAGTATAACCTGATTC 57.651 40.000 0.00 0.00 0.00 2.52
5522 7722 7.931015 AACCTGATTCCACTAATATAGACCA 57.069 36.000 0.00 0.00 0.00 4.02
5546 7746 5.500234 ACAGAAAACCTTGCAGCTATCATA 58.500 37.500 0.00 0.00 0.00 2.15
5636 7836 1.891811 TGGGTATGTGGTTGTGCAATG 59.108 47.619 0.00 0.00 0.00 2.82
5637 7837 1.892474 GGGTATGTGGTTGTGCAATGT 59.108 47.619 0.00 0.00 0.00 2.71
5642 7842 0.249405 GTGGTTGTGCAATGTGGGTG 60.249 55.000 0.00 0.00 0.00 4.61
5711 7920 8.862325 TCTAACAAATTCACACATGTATCCTT 57.138 30.769 0.00 0.00 0.00 3.36
5715 7924 7.950512 ACAAATTCACACATGTATCCTTTTGA 58.049 30.769 20.48 5.94 0.00 2.69
5716 7925 8.587608 ACAAATTCACACATGTATCCTTTTGAT 58.412 29.630 20.48 9.11 37.49 2.57
5717 7926 9.426837 CAAATTCACACATGTATCCTTTTGATT 57.573 29.630 0.00 0.00 34.76 2.57
5720 7929 7.320443 TCACACATGTATCCTTTTGATTAGC 57.680 36.000 0.00 0.00 34.76 3.09
5721 7930 7.112122 TCACACATGTATCCTTTTGATTAGCT 58.888 34.615 0.00 0.00 34.76 3.32
5722 7931 7.611467 TCACACATGTATCCTTTTGATTAGCTT 59.389 33.333 0.00 0.00 34.76 3.74
5723 7932 8.892723 CACACATGTATCCTTTTGATTAGCTTA 58.107 33.333 0.00 0.00 34.76 3.09
5804 8013 8.085909 TCCGCGTATTCTATCTTGATTGAATTA 58.914 33.333 19.39 8.25 32.33 1.40
5833 8042 5.661056 TCTGTTCTACATAGGGTCTGTTG 57.339 43.478 0.00 0.00 0.00 3.33
5885 8095 6.992123 TCATGGTAGAATGTTACATAGCTTGG 59.008 38.462 0.00 0.00 0.00 3.61
6018 8228 6.484818 AAAAACCATTATTCACTTGCATGC 57.515 33.333 11.82 11.82 0.00 4.06
6045 8255 0.601311 AAGTCTGCAGTTCTCGTGGC 60.601 55.000 14.67 0.00 0.00 5.01
6148 8363 0.250234 CTCATCCCTGCGAAACCTCA 59.750 55.000 0.00 0.00 0.00 3.86
6172 8387 1.830145 CATACGTTGCCCCCTAGCT 59.170 57.895 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.275689 CACAAGTCAAGCAATCAACCTACA 59.724 41.667 0.00 0.00 0.00 2.74
5 6 3.360249 AGCACAAGTCAAGCAATCAAC 57.640 42.857 0.00 0.00 0.00 3.18
7 8 4.136796 ACTTAGCACAAGTCAAGCAATCA 58.863 39.130 0.00 0.00 0.00 2.57
8 9 4.756084 ACTTAGCACAAGTCAAGCAATC 57.244 40.909 0.00 0.00 0.00 2.67
10 11 3.694072 ACAACTTAGCACAAGTCAAGCAA 59.306 39.130 4.41 0.00 0.00 3.91
11 12 3.278574 ACAACTTAGCACAAGTCAAGCA 58.721 40.909 4.41 0.00 0.00 3.91
13 14 8.856490 ATTTTAACAACTTAGCACAAGTCAAG 57.144 30.769 4.41 1.90 0.00 3.02
14 15 8.682710 AGATTTTAACAACTTAGCACAAGTCAA 58.317 29.630 4.41 0.00 0.00 3.18
16 17 7.591426 CCAGATTTTAACAACTTAGCACAAGTC 59.409 37.037 4.41 0.00 0.00 3.01
17 18 7.425606 CCAGATTTTAACAACTTAGCACAAGT 58.574 34.615 0.00 0.00 0.00 3.16
18 19 6.363357 GCCAGATTTTAACAACTTAGCACAAG 59.637 38.462 0.00 0.00 0.00 3.16
19 20 6.183360 TGCCAGATTTTAACAACTTAGCACAA 60.183 34.615 0.00 0.00 0.00 3.33
20 21 5.300539 TGCCAGATTTTAACAACTTAGCACA 59.699 36.000 0.00 0.00 0.00 4.57
21 22 5.768317 TGCCAGATTTTAACAACTTAGCAC 58.232 37.500 0.00 0.00 0.00 4.40
22 23 6.264292 TCTTGCCAGATTTTAACAACTTAGCA 59.736 34.615 0.00 0.00 0.00 3.49
23 24 6.582672 GTCTTGCCAGATTTTAACAACTTAGC 59.417 38.462 0.00 0.00 0.00 3.09
24 25 7.875971 AGTCTTGCCAGATTTTAACAACTTAG 58.124 34.615 0.00 0.00 0.00 2.18
26 27 6.715347 AGTCTTGCCAGATTTTAACAACTT 57.285 33.333 0.00 0.00 0.00 2.66
27 28 6.715347 AAGTCTTGCCAGATTTTAACAACT 57.285 33.333 0.00 0.00 0.00 3.16
32 33 9.487790 CCAATTTTAAGTCTTGCCAGATTTTAA 57.512 29.630 0.77 2.95 31.67 1.52
33 34 8.093927 CCCAATTTTAAGTCTTGCCAGATTTTA 58.906 33.333 0.77 0.00 31.67 1.52
35 36 6.269769 TCCCAATTTTAAGTCTTGCCAGATTT 59.730 34.615 1.18 1.18 33.69 2.17
36 37 5.779771 TCCCAATTTTAAGTCTTGCCAGATT 59.220 36.000 0.00 0.00 0.00 2.40
37 38 5.332743 TCCCAATTTTAAGTCTTGCCAGAT 58.667 37.500 0.00 0.00 0.00 2.90
38 39 4.735369 TCCCAATTTTAAGTCTTGCCAGA 58.265 39.130 0.00 0.00 0.00 3.86
39 40 5.467035 TTCCCAATTTTAAGTCTTGCCAG 57.533 39.130 0.00 0.00 0.00 4.85
41 42 7.228507 ACATTTTTCCCAATTTTAAGTCTTGCC 59.771 33.333 0.00 0.00 0.00 4.52
72 73 9.457436 GGGTGATTAGACTAGACCAAATAAAAA 57.543 33.333 0.00 0.00 0.00 1.94
73 74 8.050930 GGGGTGATTAGACTAGACCAAATAAAA 58.949 37.037 0.00 0.00 0.00 1.52
74 75 7.366191 GGGGGTGATTAGACTAGACCAAATAAA 60.366 40.741 0.00 0.00 0.00 1.40
75 76 6.100714 GGGGGTGATTAGACTAGACCAAATAA 59.899 42.308 0.00 0.00 0.00 1.40
76 77 5.605488 GGGGGTGATTAGACTAGACCAAATA 59.395 44.000 0.00 0.00 0.00 1.40
77 78 4.412528 GGGGGTGATTAGACTAGACCAAAT 59.587 45.833 0.00 0.00 0.00 2.32
79 80 3.381335 GGGGGTGATTAGACTAGACCAA 58.619 50.000 0.00 0.00 0.00 3.67
97 98 2.091994 TCGAAAGTAGGTCTAGAGGGGG 60.092 54.545 0.00 0.00 0.00 5.40
99 100 3.822167 GGATCGAAAGTAGGTCTAGAGGG 59.178 52.174 0.00 0.00 0.00 4.30
100 101 4.721132 AGGATCGAAAGTAGGTCTAGAGG 58.279 47.826 0.00 0.00 0.00 3.69
101 102 6.289834 TGTAGGATCGAAAGTAGGTCTAGAG 58.710 44.000 0.00 0.00 0.00 2.43
103 104 7.513371 AATGTAGGATCGAAAGTAGGTCTAG 57.487 40.000 0.00 0.00 0.00 2.43
104 105 8.435187 TCTAATGTAGGATCGAAAGTAGGTCTA 58.565 37.037 0.00 0.00 0.00 2.59
105 106 7.288560 TCTAATGTAGGATCGAAAGTAGGTCT 58.711 38.462 0.00 0.00 0.00 3.85
106 107 7.507733 TCTAATGTAGGATCGAAAGTAGGTC 57.492 40.000 0.00 0.00 0.00 3.85
108 109 7.713750 TGTTCTAATGTAGGATCGAAAGTAGG 58.286 38.462 0.00 0.00 0.00 3.18
109 110 9.021863 GTTGTTCTAATGTAGGATCGAAAGTAG 57.978 37.037 0.00 0.00 0.00 2.57
110 111 8.746530 AGTTGTTCTAATGTAGGATCGAAAGTA 58.253 33.333 0.00 0.00 0.00 2.24
111 112 7.612677 AGTTGTTCTAATGTAGGATCGAAAGT 58.387 34.615 0.00 0.00 0.00 2.66
112 113 9.239002 CTAGTTGTTCTAATGTAGGATCGAAAG 57.761 37.037 0.00 0.00 0.00 2.62
114 115 8.289939 ACTAGTTGTTCTAATGTAGGATCGAA 57.710 34.615 0.00 0.00 0.00 3.71
116 117 6.851837 CGACTAGTTGTTCTAATGTAGGATCG 59.148 42.308 0.00 0.00 0.00 3.69
117 118 7.928103 TCGACTAGTTGTTCTAATGTAGGATC 58.072 38.462 10.00 0.00 0.00 3.36
118 119 7.876936 TCGACTAGTTGTTCTAATGTAGGAT 57.123 36.000 10.00 0.00 0.00 3.24
119 120 7.692460 TTCGACTAGTTGTTCTAATGTAGGA 57.308 36.000 10.00 0.00 0.00 2.94
120 121 8.407064 AGATTCGACTAGTTGTTCTAATGTAGG 58.593 37.037 10.00 0.00 0.00 3.18
121 122 9.227490 CAGATTCGACTAGTTGTTCTAATGTAG 57.773 37.037 10.00 0.00 0.00 2.74
122 123 8.953313 TCAGATTCGACTAGTTGTTCTAATGTA 58.047 33.333 10.00 0.00 0.00 2.29
123 124 7.827701 TCAGATTCGACTAGTTGTTCTAATGT 58.172 34.615 10.00 0.00 0.00 2.71
124 125 8.184848 TCTCAGATTCGACTAGTTGTTCTAATG 58.815 37.037 10.00 3.89 0.00 1.90
125 126 8.282455 TCTCAGATTCGACTAGTTGTTCTAAT 57.718 34.615 10.00 2.57 0.00 1.73
130 131 4.218635 TGCTCTCAGATTCGACTAGTTGTT 59.781 41.667 10.00 0.00 0.00 2.83
146 147 0.966179 TAGCTTCGGTTGTGCTCTCA 59.034 50.000 0.00 0.00 38.15 3.27
230 232 1.373590 AACGTCTTGCACCGCTTGTT 61.374 50.000 0.00 0.00 0.00 2.83
234 236 0.814010 AAAGAACGTCTTGCACCGCT 60.814 50.000 0.00 0.00 36.71 5.52
247 249 0.169009 GCGATGACTGCCCAAAGAAC 59.831 55.000 0.00 0.00 0.00 3.01
295 297 1.244019 CGGTGCTGGCCTAAAAGCTT 61.244 55.000 13.45 0.00 40.21 3.74
474 477 4.821589 CGGCCGGACTTGAGCTCC 62.822 72.222 20.10 0.00 0.00 4.70
509 512 3.726595 TATTTGCGCTCCCGACGGG 62.727 63.158 27.86 27.86 46.11 5.28
513 516 0.742990 CACCTTATTTGCGCTCCCGA 60.743 55.000 9.73 0.00 36.29 5.14
527 530 1.055551 TACCCAACCACGACCACCTT 61.056 55.000 0.00 0.00 0.00 3.50
534 537 2.642254 CCGAGCTACCCAACCACGA 61.642 63.158 0.00 0.00 0.00 4.35
555 558 2.356780 ATCCCGTGTTCCCTCGACC 61.357 63.158 0.00 0.00 0.00 4.79
556 559 1.153628 CATCCCGTGTTCCCTCGAC 60.154 63.158 0.00 0.00 0.00 4.20
568 571 4.096003 AACCCCTGACGCATCCCG 62.096 66.667 0.00 0.00 44.21 5.14
569 572 2.438434 CAACCCCTGACGCATCCC 60.438 66.667 0.00 0.00 0.00 3.85
570 573 2.438434 CCAACCCCTGACGCATCC 60.438 66.667 0.00 0.00 0.00 3.51
571 574 2.438434 CCCAACCCCTGACGCATC 60.438 66.667 0.00 0.00 0.00 3.91
572 575 4.047125 CCCCAACCCCTGACGCAT 62.047 66.667 0.00 0.00 0.00 4.73
576 579 3.238197 ATTGGCCCCAACCCCTGAC 62.238 63.158 0.00 0.00 38.88 3.51
578 581 2.684655 CATTGGCCCCAACCCCTG 60.685 66.667 0.00 0.00 38.88 4.45
579 582 4.720680 GCATTGGCCCCAACCCCT 62.721 66.667 0.00 0.00 38.88 4.79
599 602 3.730761 CTGTTGTGCAGCTCGGCC 61.731 66.667 0.00 0.00 38.52 6.13
607 610 2.335729 CGCCATTGCTGTTGTGCA 59.664 55.556 0.00 0.00 41.65 4.57
608 611 2.431260 CCGCCATTGCTGTTGTGC 60.431 61.111 0.00 0.00 34.43 4.57
610 613 2.911509 TGCCGCCATTGCTGTTGT 60.912 55.556 0.00 0.00 34.43 3.32
611 614 2.126228 CTGCCGCCATTGCTGTTG 60.126 61.111 0.00 0.00 34.43 3.33
612 615 4.060038 GCTGCCGCCATTGCTGTT 62.060 61.111 0.00 0.00 34.43 3.16
626 629 2.438614 TCTCCTCCCTCGTCGCTG 60.439 66.667 0.00 0.00 0.00 5.18
628 631 2.438795 ACTCTCCTCCCTCGTCGC 60.439 66.667 0.00 0.00 0.00 5.19
632 635 3.522731 CGCCACTCTCCTCCCTCG 61.523 72.222 0.00 0.00 0.00 4.63
633 636 3.151022 CCGCCACTCTCCTCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
634 637 3.999285 ACCGCCACTCTCCTCCCT 61.999 66.667 0.00 0.00 0.00 4.20
637 640 2.997897 ACCACCGCCACTCTCCTC 60.998 66.667 0.00 0.00 0.00 3.71
650 653 4.767255 CTCCTCCAGCCGCACCAC 62.767 72.222 0.00 0.00 0.00 4.16
659 662 4.505970 CCCCTCCCCCTCCTCCAG 62.506 77.778 0.00 0.00 0.00 3.86
660 663 2.931629 TATCCCCTCCCCCTCCTCCA 62.932 65.000 0.00 0.00 0.00 3.86
661 664 2.104921 TATCCCCTCCCCCTCCTCC 61.105 68.421 0.00 0.00 0.00 4.30
663 666 0.636932 TTCTATCCCCTCCCCCTCCT 60.637 60.000 0.00 0.00 0.00 3.69
664 667 0.271005 TTTCTATCCCCTCCCCCTCC 59.729 60.000 0.00 0.00 0.00 4.30
665 668 2.207926 TTTTCTATCCCCTCCCCCTC 57.792 55.000 0.00 0.00 0.00 4.30
667 670 1.499438 CCTTTTTCTATCCCCTCCCCC 59.501 57.143 0.00 0.00 0.00 5.40
669 672 1.499438 CCCCTTTTTCTATCCCCTCCC 59.501 57.143 0.00 0.00 0.00 4.30
670 673 1.499438 CCCCCTTTTTCTATCCCCTCC 59.501 57.143 0.00 0.00 0.00 4.30
709 712 4.181010 CATGTCCTCCCTGGCCCG 62.181 72.222 0.00 0.00 35.26 6.13
711 714 3.813724 CCCATGTCCTCCCTGGCC 61.814 72.222 0.00 0.00 35.26 5.36
713 716 3.016971 TGCCCATGTCCTCCCTGG 61.017 66.667 0.00 0.00 37.10 4.45
714 717 2.593978 CTGCCCATGTCCTCCCTG 59.406 66.667 0.00 0.00 0.00 4.45
717 720 4.864334 CGCCTGCCCATGTCCTCC 62.864 72.222 0.00 0.00 0.00 4.30
755 758 1.662446 GAGTTTGCGGTCGAACGGA 60.662 57.895 26.23 21.07 40.68 4.69
756 759 1.886861 CTGAGTTTGCGGTCGAACGG 61.887 60.000 26.23 6.46 40.68 4.44
757 760 1.487231 CTGAGTTTGCGGTCGAACG 59.513 57.895 20.73 20.73 40.68 3.95
758 761 1.204312 GCTGAGTTTGCGGTCGAAC 59.796 57.895 0.00 0.00 36.95 3.95
759 762 1.959226 GGCTGAGTTTGCGGTCGAA 60.959 57.895 0.00 0.00 0.00 3.71
760 763 2.357034 GGCTGAGTTTGCGGTCGA 60.357 61.111 0.00 0.00 0.00 4.20
761 764 1.781025 TTTGGCTGAGTTTGCGGTCG 61.781 55.000 0.00 0.00 0.00 4.79
762 765 0.317854 GTTTGGCTGAGTTTGCGGTC 60.318 55.000 0.00 0.00 0.00 4.79
777 780 0.609662 CCATTCCCAGCCCAAGTTTG 59.390 55.000 0.00 0.00 0.00 2.93
779 782 1.079073 CCCATTCCCAGCCCAAGTT 59.921 57.895 0.00 0.00 0.00 2.66
780 783 1.739608 AACCCATTCCCAGCCCAAGT 61.740 55.000 0.00 0.00 0.00 3.16
781 784 1.079073 AACCCATTCCCAGCCCAAG 59.921 57.895 0.00 0.00 0.00 3.61
782 785 1.229145 CAACCCATTCCCAGCCCAA 60.229 57.895 0.00 0.00 0.00 4.12
785 788 0.897621 CTTTCAACCCATTCCCAGCC 59.102 55.000 0.00 0.00 0.00 4.85
786 789 0.247460 GCTTTCAACCCATTCCCAGC 59.753 55.000 0.00 0.00 0.00 4.85
787 790 0.527565 CGCTTTCAACCCATTCCCAG 59.472 55.000 0.00 0.00 0.00 4.45
788 791 0.897863 CCGCTTTCAACCCATTCCCA 60.898 55.000 0.00 0.00 0.00 4.37
789 792 0.610785 TCCGCTTTCAACCCATTCCC 60.611 55.000 0.00 0.00 0.00 3.97
790 793 0.526211 GTCCGCTTTCAACCCATTCC 59.474 55.000 0.00 0.00 0.00 3.01
791 794 1.243902 TGTCCGCTTTCAACCCATTC 58.756 50.000 0.00 0.00 0.00 2.67
792 795 1.698506 TTGTCCGCTTTCAACCCATT 58.301 45.000 0.00 0.00 0.00 3.16
793 796 1.698506 TTTGTCCGCTTTCAACCCAT 58.301 45.000 0.00 0.00 0.00 4.00
794 797 1.475403 TTTTGTCCGCTTTCAACCCA 58.525 45.000 0.00 0.00 0.00 4.51
795 798 2.588027 TTTTTGTCCGCTTTCAACCC 57.412 45.000 0.00 0.00 0.00 4.11
811 814 4.322385 GCGCCTGCGTCCGTTTTT 62.322 61.111 13.57 0.00 42.09 1.94
865 868 1.200020 CGGGTCGGTTCGGTATATACC 59.800 57.143 20.39 20.39 42.98 2.73
944 957 1.226542 GGGGCTAGGGTTAGGTTGC 59.773 63.158 0.00 0.00 0.00 4.17
1373 1398 2.040359 GGGGGAAGGAGGAGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
1374 1399 2.879490 TGGGGGAAGGAGGAGGGA 60.879 66.667 0.00 0.00 0.00 4.20
1375 1400 2.692741 GTGGGGGAAGGAGGAGGG 60.693 72.222 0.00 0.00 0.00 4.30
1376 1401 1.690985 GAGTGGGGGAAGGAGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
1377 1402 2.060980 CGAGTGGGGGAAGGAGGAG 61.061 68.421 0.00 0.00 0.00 3.69
1378 1403 2.038975 CGAGTGGGGGAAGGAGGA 59.961 66.667 0.00 0.00 0.00 3.71
1407 1432 3.886001 CCCGGGGGTATCCAAGGC 61.886 72.222 14.71 0.00 37.22 4.35
1451 1479 3.793559 CACCGAAGTCCTAATTACCTGG 58.206 50.000 0.00 0.00 0.00 4.45
1453 1481 2.169978 GGCACCGAAGTCCTAATTACCT 59.830 50.000 0.00 0.00 0.00 3.08
1475 1503 4.586841 TCTTGTCTTTTATTGTTGGGTGGG 59.413 41.667 0.00 0.00 0.00 4.61
1477 1505 6.486657 TCTCTCTTGTCTTTTATTGTTGGGTG 59.513 38.462 0.00 0.00 0.00 4.61
1478 1506 6.601332 TCTCTCTTGTCTTTTATTGTTGGGT 58.399 36.000 0.00 0.00 0.00 4.51
1479 1507 7.391554 TCATCTCTCTTGTCTTTTATTGTTGGG 59.608 37.037 0.00 0.00 0.00 4.12
1480 1508 8.327941 TCATCTCTCTTGTCTTTTATTGTTGG 57.672 34.615 0.00 0.00 0.00 3.77
1481 1509 9.212641 TCTCATCTCTCTTGTCTTTTATTGTTG 57.787 33.333 0.00 0.00 0.00 3.33
1482 1510 9.434420 CTCTCATCTCTCTTGTCTTTTATTGTT 57.566 33.333 0.00 0.00 0.00 2.83
1483 1511 8.040132 CCTCTCATCTCTCTTGTCTTTTATTGT 58.960 37.037 0.00 0.00 0.00 2.71
1488 1516 6.678568 TTCCTCTCATCTCTCTTGTCTTTT 57.321 37.500 0.00 0.00 0.00 2.27
1492 1520 5.186797 TCCTTTTCCTCTCATCTCTCTTGTC 59.813 44.000 0.00 0.00 0.00 3.18
1494 1522 5.395546 CCTCCTTTTCCTCTCATCTCTCTTG 60.396 48.000 0.00 0.00 0.00 3.02
1495 1523 4.716287 CCTCCTTTTCCTCTCATCTCTCTT 59.284 45.833 0.00 0.00 0.00 2.85
1496 1524 4.289245 CCTCCTTTTCCTCTCATCTCTCT 58.711 47.826 0.00 0.00 0.00 3.10
1497 1525 3.387699 CCCTCCTTTTCCTCTCATCTCTC 59.612 52.174 0.00 0.00 0.00 3.20
1498 1526 3.013417 TCCCTCCTTTTCCTCTCATCTCT 59.987 47.826 0.00 0.00 0.00 3.10
1502 1530 3.498614 TCTCCCTCCTTTTCCTCTCAT 57.501 47.619 0.00 0.00 0.00 2.90
1503 1531 3.110705 CATCTCCCTCCTTTTCCTCTCA 58.889 50.000 0.00 0.00 0.00 3.27
1506 1534 2.840651 TGTCATCTCCCTCCTTTTCCTC 59.159 50.000 0.00 0.00 0.00 3.71
1507 1535 2.843113 CTGTCATCTCCCTCCTTTTCCT 59.157 50.000 0.00 0.00 0.00 3.36
1508 1536 2.573915 ACTGTCATCTCCCTCCTTTTCC 59.426 50.000 0.00 0.00 0.00 3.13
1509 1537 3.604582 CACTGTCATCTCCCTCCTTTTC 58.395 50.000 0.00 0.00 0.00 2.29
1511 1539 1.912043 CCACTGTCATCTCCCTCCTTT 59.088 52.381 0.00 0.00 0.00 3.11
1513 1541 0.326048 CCCACTGTCATCTCCCTCCT 60.326 60.000 0.00 0.00 0.00 3.69
1516 1544 2.362369 CGCCCACTGTCATCTCCCT 61.362 63.158 0.00 0.00 0.00 4.20
1517 1545 2.187946 CGCCCACTGTCATCTCCC 59.812 66.667 0.00 0.00 0.00 4.30
1518 1546 1.142748 CTCGCCCACTGTCATCTCC 59.857 63.158 0.00 0.00 0.00 3.71
1519 1547 1.520342 GCTCGCCCACTGTCATCTC 60.520 63.158 0.00 0.00 0.00 2.75
1520 1548 1.986757 AGCTCGCCCACTGTCATCT 60.987 57.895 0.00 0.00 0.00 2.90
1521 1549 1.812922 CAGCTCGCCCACTGTCATC 60.813 63.158 0.00 0.00 0.00 2.92
1522 1550 2.267006 CAGCTCGCCCACTGTCAT 59.733 61.111 0.00 0.00 0.00 3.06
1524 1552 3.655810 CTCCAGCTCGCCCACTGTC 62.656 68.421 0.00 0.00 31.76 3.51
1533 1561 3.200593 GTGCATGCCTCCAGCTCG 61.201 66.667 16.68 0.00 44.23 5.03
1534 1562 3.200593 CGTGCATGCCTCCAGCTC 61.201 66.667 16.68 0.00 44.23 4.09
1536 1564 3.807538 CACGTGCATGCCTCCAGC 61.808 66.667 16.68 0.00 44.14 4.85
1537 1565 3.129502 CCACGTGCATGCCTCCAG 61.130 66.667 16.68 4.36 0.00 3.86
1538 1566 4.720902 CCCACGTGCATGCCTCCA 62.721 66.667 16.68 0.00 0.00 3.86
1539 1567 4.722700 ACCCACGTGCATGCCTCC 62.723 66.667 16.68 1.87 0.00 4.30
1549 1577 4.579384 CAACAGGCCCACCCACGT 62.579 66.667 0.00 0.00 36.11 4.49
1551 1579 4.912395 TGCAACAGGCCCACCCAC 62.912 66.667 0.00 0.00 43.89 4.61
1552 1580 3.913445 ATGCAACAGGCCCACCCA 61.913 61.111 0.00 0.00 43.89 4.51
1553 1581 3.384532 CATGCAACAGGCCCACCC 61.385 66.667 0.00 0.00 43.89 4.61
1554 1582 4.073200 GCATGCAACAGGCCCACC 62.073 66.667 14.21 0.00 43.89 4.61
1555 1583 2.775032 CTTGCATGCAACAGGCCCAC 62.775 60.000 28.80 0.00 40.65 4.61
1556 1584 2.523657 TTGCATGCAACAGGCCCA 60.524 55.556 28.80 4.49 40.65 5.36
1557 1585 2.221906 CTCTTGCATGCAACAGGCCC 62.222 60.000 28.80 0.00 40.65 5.80
1558 1586 1.214589 CTCTTGCATGCAACAGGCC 59.785 57.895 28.80 0.00 40.65 5.19
1559 1587 0.170561 CTCTCTTGCATGCAACAGGC 59.829 55.000 28.38 0.00 41.79 4.85
1560 1588 1.738350 CTCTCTCTTGCATGCAACAGG 59.262 52.381 28.38 20.20 0.00 4.00
1562 1590 2.614734 CCTCTCTCTCTTGCATGCAACA 60.615 50.000 28.80 18.41 0.00 3.33
1563 1591 2.008329 CCTCTCTCTCTTGCATGCAAC 58.992 52.381 28.80 0.00 0.00 4.17
1564 1592 1.904537 TCCTCTCTCTCTTGCATGCAA 59.095 47.619 30.12 30.12 0.00 4.08
1565 1593 1.481363 CTCCTCTCTCTCTTGCATGCA 59.519 52.381 18.46 18.46 0.00 3.96
1567 1595 2.363038 CCTCTCCTCTCTCTCTTGCATG 59.637 54.545 0.00 0.00 0.00 4.06
1568 1596 2.669781 CCTCTCCTCTCTCTCTTGCAT 58.330 52.381 0.00 0.00 0.00 3.96
1571 1599 1.411501 CCCCCTCTCCTCTCTCTCTTG 60.412 61.905 0.00 0.00 0.00 3.02
1573 1601 0.047176 TCCCCCTCTCCTCTCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10
1575 1603 0.254107 ACTCCCCCTCTCCTCTCTCT 60.254 60.000 0.00 0.00 0.00 3.10
1577 1605 1.589399 CCACTCCCCCTCTCCTCTCT 61.589 65.000 0.00 0.00 0.00 3.10
1578 1606 1.075600 CCACTCCCCCTCTCCTCTC 60.076 68.421 0.00 0.00 0.00 3.20
1579 1607 2.641746 CCCACTCCCCCTCTCCTCT 61.642 68.421 0.00 0.00 0.00 3.69
1581 1609 2.540910 TCCCACTCCCCCTCTCCT 60.541 66.667 0.00 0.00 0.00 3.69
1582 1610 2.041405 CTCCCACTCCCCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
1583 1611 2.041405 CCTCCCACTCCCCCTCTC 60.041 72.222 0.00 0.00 0.00 3.20
1584 1612 4.423209 GCCTCCCACTCCCCCTCT 62.423 72.222 0.00 0.00 0.00 3.69
1585 1613 4.423209 AGCCTCCCACTCCCCCTC 62.423 72.222 0.00 0.00 0.00 4.30
1588 1616 3.403558 GTCAGCCTCCCACTCCCC 61.404 72.222 0.00 0.00 0.00 4.81
1589 1617 2.607750 TGTCAGCCTCCCACTCCC 60.608 66.667 0.00 0.00 0.00 4.30
1590 1618 1.915769 ACTGTCAGCCTCCCACTCC 60.916 63.158 0.00 0.00 0.00 3.85
1591 1619 1.294780 CACTGTCAGCCTCCCACTC 59.705 63.158 0.00 0.00 0.00 3.51
1592 1620 2.219875 CCACTGTCAGCCTCCCACT 61.220 63.158 0.00 0.00 0.00 4.00
1593 1621 2.348998 CCACTGTCAGCCTCCCAC 59.651 66.667 0.00 0.00 0.00 4.61
1594 1622 2.930019 CCCACTGTCAGCCTCCCA 60.930 66.667 0.00 0.00 0.00 4.37
1595 1623 4.416738 GCCCACTGTCAGCCTCCC 62.417 72.222 0.00 0.00 0.00 4.30
1609 1637 0.746563 TATTTACACGCAGCAGGCCC 60.747 55.000 0.00 0.00 40.31 5.80
1612 1640 3.362986 CGCTATTATTTACACGCAGCAGG 60.363 47.826 0.00 0.00 0.00 4.85
1997 2025 4.512914 GCATCTCCACCCAGCCCC 62.513 72.222 0.00 0.00 0.00 5.80
1998 2026 3.412624 GAGCATCTCCACCCAGCCC 62.413 68.421 0.00 0.00 0.00 5.19
1999 2027 2.191641 GAGCATCTCCACCCAGCC 59.808 66.667 0.00 0.00 0.00 4.85
2010 2038 5.635700 CGCTTAATCTACCCTTTAGAGCATC 59.364 44.000 0.00 0.00 0.00 3.91
2011 2039 5.070580 ACGCTTAATCTACCCTTTAGAGCAT 59.929 40.000 0.00 0.00 0.00 3.79
2012 2040 4.404715 ACGCTTAATCTACCCTTTAGAGCA 59.595 41.667 0.00 0.00 0.00 4.26
2013 2041 4.946445 ACGCTTAATCTACCCTTTAGAGC 58.054 43.478 0.00 0.00 0.00 4.09
2014 2042 9.543783 AAAATACGCTTAATCTACCCTTTAGAG 57.456 33.333 0.00 0.00 0.00 2.43
2127 3556 0.684805 AGCTCCCGAACAGACCCTAG 60.685 60.000 0.00 0.00 0.00 3.02
2138 3567 0.321671 CTGAAGGAAACAGCTCCCGA 59.678 55.000 0.00 0.00 35.95 5.14
2399 3861 0.322008 AGGCCACAGCTTAGAGCAAC 60.322 55.000 5.01 0.00 45.56 4.17
2463 3925 5.104259 AGGAACAATCACCAATCTAGGAC 57.896 43.478 0.00 0.00 0.00 3.85
2615 4083 6.352222 CCTCTACCTCCTGCTTTGAAATAGAA 60.352 42.308 0.00 0.00 0.00 2.10
2720 4188 2.097825 GCAGAAATGGCATCTTCCAGT 58.902 47.619 0.00 0.00 39.89 4.00
3006 4496 5.625150 ACAGCAAGAACCAAGAGAAGTAAT 58.375 37.500 0.00 0.00 0.00 1.89
3037 4527 0.678048 AACCCGCAGATCAAAGAGGC 60.678 55.000 0.00 0.00 0.00 4.70
3219 4710 5.144100 TGCCTTTCTGGAAAAACCTTGATA 58.856 37.500 0.00 0.00 39.86 2.15
3578 5771 3.953612 AGCAGAATGTCCAGTCAACAAAA 59.046 39.130 0.00 0.00 39.31 2.44
3752 5949 0.038166 GAAGTGCCCAAGGGATGACA 59.962 55.000 9.92 0.00 37.50 3.58
3780 5977 4.273318 GAGATCCACCTTTGGCAATACTT 58.727 43.478 0.00 0.00 43.56 2.24
3918 6115 2.550180 GGTCTGCAAAGAGAAGTGGAAC 59.450 50.000 0.00 0.00 0.00 3.62
4372 6569 3.027974 ACTGCTTCCTCACGTAAAGAC 57.972 47.619 0.00 0.00 0.00 3.01
4414 6611 1.325355 CTGCTATTTGGCTCATGGGG 58.675 55.000 0.00 0.00 0.00 4.96
4469 6666 3.447229 GGCATAAGTTTGGCTAATGTGGT 59.553 43.478 0.00 0.00 39.00 4.16
4480 6677 4.309099 ACTGCACATTTGGCATAAGTTTG 58.691 39.130 0.00 0.00 41.06 2.93
4505 6702 3.327757 ACCTGACTATTTGCTGGAACTGA 59.672 43.478 0.00 0.00 0.00 3.41
4632 6831 1.745653 GATTACCCACCTGCTCAAAGC 59.254 52.381 0.00 0.00 42.82 3.51
4805 7004 1.895798 CTGTGTAGGGAGAGCAGACAA 59.104 52.381 0.00 0.00 0.00 3.18
4937 7136 3.514645 GTCCATCATTCATTTGGTGTGC 58.485 45.455 0.00 0.00 0.00 4.57
5318 7517 5.708948 CTCCTTGATTTATCCGTGCAAAAA 58.291 37.500 0.00 0.00 0.00 1.94
5395 7595 3.634568 TTCAGGTAACAACCGCAATTG 57.365 42.857 0.00 0.00 41.41 2.32
5499 7699 7.347222 TGTTGGTCTATATTAGTGGAATCAGGT 59.653 37.037 0.00 0.00 0.00 4.00
5503 7703 9.832445 TTTCTGTTGGTCTATATTAGTGGAATC 57.168 33.333 0.00 0.00 0.00 2.52
5507 7707 8.047310 AGGTTTTCTGTTGGTCTATATTAGTGG 58.953 37.037 0.00 0.00 0.00 4.00
5522 7722 4.144297 TGATAGCTGCAAGGTTTTCTGTT 58.856 39.130 1.02 0.00 46.63 3.16
5636 7836 1.065551 GATCCGCTTAATTGCACCCAC 59.934 52.381 0.00 0.00 0.00 4.61
5637 7837 1.340502 TGATCCGCTTAATTGCACCCA 60.341 47.619 0.00 0.00 0.00 4.51
5642 7842 4.811557 ACTAGTTCTGATCCGCTTAATTGC 59.188 41.667 0.00 0.00 0.00 3.56
5723 7932 9.836864 TCAACAGATAATGCACATAAGACTATT 57.163 29.630 0.00 0.00 0.00 1.73
5804 8013 5.281314 ACCCTATGTAGAACAGAACTCCAT 58.719 41.667 0.00 0.00 0.00 3.41
5833 8042 8.361592 TCTTAAACTACTGCAGTCAAAACTAC 57.638 34.615 25.56 0.00 36.04 2.73
5875 8085 5.832539 ATAATGCCTCTACCAAGCTATGT 57.167 39.130 0.00 0.00 0.00 2.29
5999 8209 4.751060 CTTGCATGCAAGTGAATAATGGT 58.249 39.130 40.10 0.00 45.91 3.55
6045 8255 5.807344 TGAGAAACGTATAGTCTCGATGTG 58.193 41.667 11.54 0.00 40.61 3.21
6083 8298 1.940752 GCAAAGCACCATGCCGAAATT 60.941 47.619 0.00 0.00 46.52 1.82
6172 8387 2.366837 ACGATCCTGATGGCCCCA 60.367 61.111 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.