Multiple sequence alignment - TraesCS5D01G308400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G308400 chr5D 100.000 5150 0 0 1 5150 405255792 405250643 0.000000e+00 9511.0
1 TraesCS5D01G308400 chr5D 92.857 84 4 2 5068 5150 59920364 59920446 2.520000e-23 121.0
2 TraesCS5D01G308400 chr5A 90.716 2305 146 44 1130 3392 509101246 509103524 0.000000e+00 3009.0
3 TraesCS5D01G308400 chr5A 93.327 1079 54 8 3499 4568 509103534 509104603 0.000000e+00 1578.0
4 TraesCS5D01G308400 chr5A 89.352 1080 81 23 25 1091 509100189 509101247 0.000000e+00 1327.0
5 TraesCS5D01G308400 chr5A 85.542 332 33 8 3991 4319 509107714 509108033 2.970000e-87 333.0
6 TraesCS5D01G308400 chr5B 89.579 1852 133 34 1130 2944 486088211 486086383 0.000000e+00 2296.0
7 TraesCS5D01G308400 chr5B 89.163 1781 139 27 2994 4745 486085996 486084241 0.000000e+00 2170.0
8 TraesCS5D01G308400 chr5B 92.821 780 40 5 318 1091 486088979 486088210 0.000000e+00 1116.0
9 TraesCS5D01G308400 chr5B 83.665 251 19 13 92 320 486238519 486238269 3.120000e-52 217.0
10 TraesCS5D01G308400 chr7B 92.453 106 8 0 4238 4343 673412721 673412616 8.930000e-33 152.0
11 TraesCS5D01G308400 chr7B 92.857 84 5 1 5068 5150 239399843 239399926 2.520000e-23 121.0
12 TraesCS5D01G308400 chr6D 93.103 87 6 0 5064 5150 75112643 75112729 1.510000e-25 128.0
13 TraesCS5D01G308400 chr6D 92.222 90 5 2 5063 5150 50726643 50726732 5.410000e-25 126.0
14 TraesCS5D01G308400 chr3D 93.827 81 5 0 5070 5150 281145757 281145677 7.000000e-24 122.0
15 TraesCS5D01G308400 chr3D 88.298 94 9 2 5059 5150 607415050 607415143 1.520000e-20 111.0
16 TraesCS5D01G308400 chr3A 93.827 81 5 0 5070 5150 161530355 161530435 7.000000e-24 122.0
17 TraesCS5D01G308400 chr3B 92.857 84 5 1 5068 5150 71327047 71326964 2.520000e-23 121.0
18 TraesCS5D01G308400 chr3B 95.745 47 2 0 57 103 685063079 685063125 5.530000e-10 76.8
19 TraesCS5D01G308400 chr4D 90.698 86 8 0 5065 5150 110191246 110191161 1.170000e-21 115.0
20 TraesCS5D01G308400 chr7D 92.593 54 2 1 57 108 193409897 193409950 5.530000e-10 76.8
21 TraesCS5D01G308400 chr7A 94.000 50 3 0 58 107 143359447 143359398 5.530000e-10 76.8
22 TraesCS5D01G308400 chr2D 94.000 50 3 0 57 106 170617923 170617972 5.530000e-10 76.8
23 TraesCS5D01G308400 chr2D 95.833 48 1 1 58 105 634835259 634835213 5.530000e-10 76.8
24 TraesCS5D01G308400 chr2B 92.453 53 4 0 57 109 622914061 622914113 5.530000e-10 76.8
25 TraesCS5D01G308400 chr1D 97.727 44 1 0 57 100 47710755 47710798 5.530000e-10 76.8
26 TraesCS5D01G308400 chr6B 95.556 45 2 0 57 101 530560418 530560462 7.150000e-09 73.1
27 TraesCS5D01G308400 chr1B 88.333 60 6 1 57 115 606319275 606319216 2.570000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G308400 chr5D 405250643 405255792 5149 True 9511.000000 9511 100.00000 1 5150 1 chr5D.!!$R1 5149
1 TraesCS5D01G308400 chr5A 509100189 509108033 7844 False 1561.750000 3009 89.73425 25 4568 4 chr5A.!!$F1 4543
2 TraesCS5D01G308400 chr5B 486084241 486088979 4738 True 1860.666667 2296 90.52100 318 4745 3 chr5B.!!$R2 4427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 934 0.108138 CTTCGGGGAATGAGAAGCGT 60.108 55.0 0.0 0.0 35.58 5.07 F
1103 1129 0.106708 GTGCCCTCCATCTCGCATAA 59.893 55.0 0.0 0.0 33.08 1.90 F
1104 1130 0.106708 TGCCCTCCATCTCGCATAAC 59.893 55.0 0.0 0.0 0.00 1.89 F
2710 2777 0.108138 ACGCTGTCCTGTAGATTGCC 60.108 55.0 0.0 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2693 2760 0.108138 ACGGCAATCTACAGGACAGC 60.108 55.0 0.0 0.0 0.00 4.40 R
2913 2984 0.895559 AAGCAGTGCAAGGCCTAACC 60.896 55.0 19.2 0.0 39.61 2.85 R
3103 3520 0.390124 AGAACGGCGTAACAAGGTCA 59.610 50.0 15.2 0.0 0.00 4.02 R
4602 5036 0.108585 TCTGGTGCTCAAGTCCAACC 59.891 55.0 0.0 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.183361 CCCACATCAGTACCATAACCTATCAA 60.183 42.308 0.00 0.00 0.00 2.57
74 75 6.483687 ACTTTGAAGTTGTACTAAAACTGCG 58.516 36.000 0.00 0.00 36.15 5.18
75 76 6.314400 ACTTTGAAGTTGTACTAAAACTGCGA 59.686 34.615 0.00 0.00 36.15 5.10
76 77 5.646467 TGAAGTTGTACTAAAACTGCGAC 57.354 39.130 0.00 0.00 36.15 5.19
77 78 5.110598 TGAAGTTGTACTAAAACTGCGACA 58.889 37.500 0.00 0.00 36.15 4.35
78 79 5.581479 TGAAGTTGTACTAAAACTGCGACAA 59.419 36.000 0.00 0.00 36.15 3.18
79 80 6.259167 TGAAGTTGTACTAAAACTGCGACAAT 59.741 34.615 0.00 0.00 36.15 2.71
80 81 6.613755 AGTTGTACTAAAACTGCGACAATT 57.386 33.333 0.00 0.00 36.52 2.32
83 84 8.780249 AGTTGTACTAAAACTGCGACAATTAAT 58.220 29.630 0.00 0.00 36.52 1.40
87 88 9.646336 GTACTAAAACTGCGACAATTAATATGG 57.354 33.333 0.00 0.00 0.00 2.74
96 97 4.870426 CGACAATTAATATGGATCGGAGGG 59.130 45.833 0.00 0.00 0.00 4.30
111 112 6.098982 GGATCGGAGGGAGTATCATATTTGAT 59.901 42.308 4.03 4.03 44.76 2.57
119 120 7.935755 AGGGAGTATCATATTTGATGTCTTGTG 59.064 37.037 8.72 0.00 42.60 3.33
159 160 2.206750 TCGTTTCCTTGGTGAAAGACG 58.793 47.619 0.00 0.00 38.24 4.18
160 161 1.263217 CGTTTCCTTGGTGAAAGACGG 59.737 52.381 0.00 0.00 38.24 4.79
163 164 1.597027 CCTTGGTGAAAGACGGCGT 60.597 57.895 14.65 14.65 38.24 5.68
164 165 1.164041 CCTTGGTGAAAGACGGCGTT 61.164 55.000 16.19 0.00 38.24 4.84
165 166 0.661020 CTTGGTGAAAGACGGCGTTT 59.339 50.000 16.19 5.29 38.24 3.60
166 167 0.658897 TTGGTGAAAGACGGCGTTTC 59.341 50.000 16.19 15.81 34.95 2.78
168 169 0.658897 GGTGAAAGACGGCGTTTCAA 59.341 50.000 23.92 9.66 43.68 2.69
170 171 2.287368 GGTGAAAGACGGCGTTTCAATT 60.287 45.455 23.92 11.42 43.68 2.32
171 172 3.058777 GGTGAAAGACGGCGTTTCAATTA 60.059 43.478 23.92 3.90 43.68 1.40
172 173 4.379082 GGTGAAAGACGGCGTTTCAATTAT 60.379 41.667 23.92 0.00 43.68 1.28
195 212 9.720667 TTATTTTAATCATTGATGCTTCGTGAG 57.279 29.630 0.00 0.00 0.00 3.51
204 221 2.846371 GCTTCGTGAGCCTTGATGT 58.154 52.632 2.74 0.00 46.01 3.06
205 222 0.445436 GCTTCGTGAGCCTTGATGTG 59.555 55.000 2.74 0.00 46.01 3.21
206 223 1.800805 CTTCGTGAGCCTTGATGTGT 58.199 50.000 0.00 0.00 0.00 3.72
207 224 2.930887 GCTTCGTGAGCCTTGATGTGTA 60.931 50.000 2.74 0.00 46.01 2.90
243 260 1.063174 GACCATGTTGCGCTCAGAATC 59.937 52.381 9.73 3.68 0.00 2.52
290 307 4.870123 TTGGATGACTTGGTTCCAATTG 57.130 40.909 4.67 0.00 42.96 2.32
293 310 4.653341 TGGATGACTTGGTTCCAATTGTTT 59.347 37.500 4.43 0.00 36.62 2.83
294 311 5.130145 TGGATGACTTGGTTCCAATTGTTTT 59.870 36.000 4.43 0.00 36.62 2.43
295 312 5.696270 GGATGACTTGGTTCCAATTGTTTTC 59.304 40.000 4.43 2.92 0.00 2.29
297 314 5.659463 TGACTTGGTTCCAATTGTTTTCAG 58.341 37.500 4.43 0.00 0.00 3.02
298 315 5.022282 ACTTGGTTCCAATTGTTTTCAGG 57.978 39.130 4.43 1.41 0.00 3.86
299 316 4.714308 ACTTGGTTCCAATTGTTTTCAGGA 59.286 37.500 4.43 0.00 0.00 3.86
300 317 4.935352 TGGTTCCAATTGTTTTCAGGAG 57.065 40.909 4.43 0.00 0.00 3.69
301 318 3.640967 TGGTTCCAATTGTTTTCAGGAGG 59.359 43.478 4.43 0.00 0.00 4.30
302 319 3.006859 GGTTCCAATTGTTTTCAGGAGGG 59.993 47.826 4.43 0.00 0.00 4.30
303 320 2.247358 TCCAATTGTTTTCAGGAGGGC 58.753 47.619 4.43 0.00 0.00 5.19
304 321 1.969923 CCAATTGTTTTCAGGAGGGCA 59.030 47.619 4.43 0.00 0.00 5.36
305 322 2.368221 CCAATTGTTTTCAGGAGGGCAA 59.632 45.455 4.43 0.00 0.00 4.52
306 323 3.181456 CCAATTGTTTTCAGGAGGGCAAA 60.181 43.478 4.43 0.00 0.00 3.68
307 324 3.751479 ATTGTTTTCAGGAGGGCAAAC 57.249 42.857 0.00 0.00 0.00 2.93
308 325 2.151502 TGTTTTCAGGAGGGCAAACA 57.848 45.000 0.00 0.00 36.91 2.83
309 326 2.461695 TGTTTTCAGGAGGGCAAACAA 58.538 42.857 0.00 0.00 36.44 2.83
310 327 2.430332 TGTTTTCAGGAGGGCAAACAAG 59.570 45.455 0.00 0.00 36.44 3.16
321 338 3.947834 AGGGCAAACAAGATACTGTATGC 59.052 43.478 4.79 2.02 0.00 3.14
322 339 3.947834 GGGCAAACAAGATACTGTATGCT 59.052 43.478 4.79 0.03 0.00 3.79
340 362 4.335400 TGCTTTTTCCACAAATCCCTTC 57.665 40.909 0.00 0.00 0.00 3.46
418 440 1.003355 CATCAGGCCAGGTGTCGTT 60.003 57.895 5.01 0.00 0.00 3.85
472 494 2.360852 TCGTCGTCTCCCACCTCC 60.361 66.667 0.00 0.00 0.00 4.30
509 531 2.553438 ATCCCCACTCCCACCTCTCC 62.553 65.000 0.00 0.00 0.00 3.71
615 637 2.978298 TATCCGCGGGACCTCCTCTG 62.978 65.000 27.83 0.00 32.98 3.35
684 706 1.001269 GGTAGGGTTGGGTTGGAGC 60.001 63.158 0.00 0.00 0.00 4.70
857 880 0.605319 CGTGGCCCTAAGCTGTTTGA 60.605 55.000 0.00 0.00 43.05 2.69
881 904 0.828022 TGGACGCTCCGGTTCATATT 59.172 50.000 0.00 0.00 40.17 1.28
911 934 0.108138 CTTCGGGGAATGAGAAGCGT 60.108 55.000 0.00 0.00 35.58 5.07
1041 1067 1.464198 AGGAAGCCCCACCAACTCT 60.464 57.895 0.00 0.00 37.41 3.24
1086 1112 1.648720 CAACGTGCAAGGGTCAGTG 59.351 57.895 4.26 0.00 0.00 3.66
1088 1114 3.357079 CGTGCAAGGGTCAGTGCC 61.357 66.667 0.00 0.00 40.14 5.01
1095 1121 2.592308 GGGTCAGTGCCCTCCATC 59.408 66.667 13.59 0.00 45.22 3.51
1096 1122 1.997874 GGGTCAGTGCCCTCCATCT 60.998 63.158 13.59 0.00 45.22 2.90
1097 1123 1.524482 GGTCAGTGCCCTCCATCTC 59.476 63.158 0.00 0.00 0.00 2.75
1098 1124 1.142748 GTCAGTGCCCTCCATCTCG 59.857 63.158 0.00 0.00 0.00 4.04
1099 1125 2.202987 CAGTGCCCTCCATCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
1100 1126 2.685017 AGTGCCCTCCATCTCGCA 60.685 61.111 0.00 0.00 0.00 5.10
1101 1127 2.068821 AGTGCCCTCCATCTCGCAT 61.069 57.895 0.00 0.00 33.08 4.73
1102 1128 0.760567 AGTGCCCTCCATCTCGCATA 60.761 55.000 0.00 0.00 33.08 3.14
1103 1129 0.106708 GTGCCCTCCATCTCGCATAA 59.893 55.000 0.00 0.00 33.08 1.90
1104 1130 0.106708 TGCCCTCCATCTCGCATAAC 59.893 55.000 0.00 0.00 0.00 1.89
1105 1131 0.394565 GCCCTCCATCTCGCATAACT 59.605 55.000 0.00 0.00 0.00 2.24
1106 1132 1.606737 GCCCTCCATCTCGCATAACTC 60.607 57.143 0.00 0.00 0.00 3.01
1107 1133 1.001406 CCCTCCATCTCGCATAACTCC 59.999 57.143 0.00 0.00 0.00 3.85
1108 1134 1.001406 CCTCCATCTCGCATAACTCCC 59.999 57.143 0.00 0.00 0.00 4.30
1109 1135 1.001406 CTCCATCTCGCATAACTCCCC 59.999 57.143 0.00 0.00 0.00 4.81
1110 1136 1.051812 CCATCTCGCATAACTCCCCT 58.948 55.000 0.00 0.00 0.00 4.79
1111 1137 2.158370 TCCATCTCGCATAACTCCCCTA 60.158 50.000 0.00 0.00 0.00 3.53
1112 1138 2.028930 CCATCTCGCATAACTCCCCTAC 60.029 54.545 0.00 0.00 0.00 3.18
1113 1139 2.750141 TCTCGCATAACTCCCCTACT 57.250 50.000 0.00 0.00 0.00 2.57
1114 1140 3.870538 TCTCGCATAACTCCCCTACTA 57.129 47.619 0.00 0.00 0.00 1.82
1115 1141 4.383931 TCTCGCATAACTCCCCTACTAT 57.616 45.455 0.00 0.00 0.00 2.12
1116 1142 4.333690 TCTCGCATAACTCCCCTACTATC 58.666 47.826 0.00 0.00 0.00 2.08
1117 1143 4.043059 TCTCGCATAACTCCCCTACTATCT 59.957 45.833 0.00 0.00 0.00 1.98
1118 1144 4.079970 TCGCATAACTCCCCTACTATCTG 58.920 47.826 0.00 0.00 0.00 2.90
1119 1145 3.827302 CGCATAACTCCCCTACTATCTGT 59.173 47.826 0.00 0.00 0.00 3.41
1120 1146 4.281182 CGCATAACTCCCCTACTATCTGTT 59.719 45.833 0.00 0.00 0.00 3.16
1121 1147 5.221461 CGCATAACTCCCCTACTATCTGTTT 60.221 44.000 0.00 0.00 0.00 2.83
1122 1148 6.592870 GCATAACTCCCCTACTATCTGTTTT 58.407 40.000 0.00 0.00 0.00 2.43
1123 1149 7.054751 GCATAACTCCCCTACTATCTGTTTTT 58.945 38.462 0.00 0.00 0.00 1.94
1144 1170 4.818534 TTCTTTCTGAATGTGTGCAGTC 57.181 40.909 0.00 0.00 39.85 3.51
1145 1171 3.807553 TCTTTCTGAATGTGTGCAGTCA 58.192 40.909 0.00 0.00 45.83 3.41
1169 1195 7.181305 TCAGTAATAATACACCCCTCACAAAGA 59.819 37.037 0.00 0.00 34.29 2.52
1170 1196 7.827236 CAGTAATAATACACCCCTCACAAAGAA 59.173 37.037 0.00 0.00 34.29 2.52
1171 1197 8.047310 AGTAATAATACACCCCTCACAAAGAAG 58.953 37.037 0.00 0.00 34.29 2.85
1177 1203 2.907042 ACCCCTCACAAAGAAGGAGTAG 59.093 50.000 0.00 0.00 28.36 2.57
1181 1207 4.162320 CCCTCACAAAGAAGGAGTAGCATA 59.838 45.833 0.00 0.00 28.36 3.14
1286 1312 3.708563 AACATTGTTGGTTTCTGTCCG 57.291 42.857 0.15 0.00 0.00 4.79
1342 1368 8.470002 TCCATGATCATAATTAGAGATACCACG 58.530 37.037 8.15 0.00 0.00 4.94
1343 1369 7.223582 CCATGATCATAATTAGAGATACCACGC 59.776 40.741 8.15 0.00 0.00 5.34
1576 1602 5.122869 CACAGGAGGTAATGTGTCATTTCTG 59.877 44.000 0.37 0.00 41.49 3.02
1611 1638 6.226052 TGTGACATATGATAGTCCAGATTGC 58.774 40.000 10.38 0.00 33.89 3.56
1663 1690 2.025037 AGGGCAAGCATCTGGAAATACA 60.025 45.455 0.00 0.00 0.00 2.29
1669 1696 5.335897 GCAAGCATCTGGAAATACAACTGAA 60.336 40.000 0.00 0.00 0.00 3.02
1738 1765 2.204463 TCATTACCAGATGCCCAAGGA 58.796 47.619 0.00 0.00 0.00 3.36
1747 1774 4.530875 CAGATGCCCAAGGATTAGTTTCT 58.469 43.478 0.00 0.00 0.00 2.52
1874 1902 6.094742 TCAATGAGTTGTTAAGTGTGCAGAAA 59.905 34.615 0.00 0.00 36.69 2.52
2040 2071 5.607119 TGTTTTCTCGGACAGCTATTTTC 57.393 39.130 0.00 0.00 0.00 2.29
2050 2081 4.393371 GGACAGCTATTTTCCTCACTTGTC 59.607 45.833 0.00 0.00 0.00 3.18
2053 2084 4.452455 CAGCTATTTTCCTCACTTGTCGTT 59.548 41.667 0.00 0.00 0.00 3.85
2084 2115 9.771534 TCTCAGTTTTAAAATTTTAACCATGGG 57.228 29.630 20.35 17.52 32.77 4.00
2097 2128 9.889128 ATTTTAACCATGGGAAATTGATTGTAG 57.111 29.630 18.09 0.00 0.00 2.74
2099 2130 5.920193 ACCATGGGAAATTGATTGTAGTG 57.080 39.130 18.09 0.00 0.00 2.74
2104 2135 4.701651 TGGGAAATTGATTGTAGTGCTGAG 59.298 41.667 0.00 0.00 0.00 3.35
2108 2139 5.633830 AATTGATTGTAGTGCTGAGTTGG 57.366 39.130 0.00 0.00 0.00 3.77
2109 2140 3.057969 TGATTGTAGTGCTGAGTTGGG 57.942 47.619 0.00 0.00 0.00 4.12
2115 2154 1.372501 AGTGCTGAGTTGGGGGTAAT 58.627 50.000 0.00 0.00 0.00 1.89
2117 2156 1.818674 GTGCTGAGTTGGGGGTAATTG 59.181 52.381 0.00 0.00 0.00 2.32
2154 2193 9.953565 ACTTACTGAACTTATGGCATTACTAAA 57.046 29.630 4.78 0.00 0.00 1.85
2212 2261 6.405842 GGCACCATATTTTTCTAGTTTCAGGG 60.406 42.308 0.00 0.00 0.00 4.45
2219 2271 6.709018 TTTTTCTAGTTTCAGGGTTTCTGG 57.291 37.500 0.00 0.00 43.53 3.86
2228 2280 4.733077 TCAGGGTTTCTGGTTGGATTTA 57.267 40.909 0.00 0.00 43.53 1.40
2231 2283 4.586841 CAGGGTTTCTGGTTGGATTTAACA 59.413 41.667 0.00 0.00 39.76 2.41
2244 2296 8.598075 GGTTGGATTTAACAGTAGTTGTATACG 58.402 37.037 0.00 0.00 39.73 3.06
2246 2298 8.692110 TGGATTTAACAGTAGTTGTATACGTG 57.308 34.615 0.00 0.00 39.73 4.49
2251 2303 8.948853 TTAACAGTAGTTGTATACGTGTACAC 57.051 34.615 22.77 16.32 39.73 2.90
2254 2306 7.968246 ACAGTAGTTGTATACGTGTACACTAG 58.032 38.462 22.77 16.61 38.56 2.57
2261 2316 8.420189 GTTGTATACGTGTACACTAGTGTTTTC 58.580 37.037 32.15 21.68 41.83 2.29
2262 2317 7.874940 TGTATACGTGTACACTAGTGTTTTCT 58.125 34.615 32.15 10.87 41.83 2.52
2264 2319 9.185192 GTATACGTGTACACTAGTGTTTTCTTT 57.815 33.333 32.15 15.37 41.83 2.52
2267 2322 8.477984 ACGTGTACACTAGTGTTTTCTTTTTA 57.522 30.769 32.15 9.46 41.83 1.52
2297 2354 5.012664 TGGTAGCTTGTCCAGAATTCAGTTA 59.987 40.000 8.44 0.00 0.00 2.24
2303 2360 6.541641 GCTTGTCCAGAATTCAGTTATCATCT 59.458 38.462 8.44 0.00 0.00 2.90
2340 2397 9.803130 CTTGATTATGTAGATAAATTGCGTGAG 57.197 33.333 0.00 0.00 0.00 3.51
2452 2509 8.140112 AGATAATGTGACCTCTTTCTAGTGTT 57.860 34.615 0.00 0.00 0.00 3.32
2612 2669 4.039151 TGAACGCTCAGATGAAGAGATC 57.961 45.455 0.00 0.00 35.09 2.75
2642 2699 1.839424 GCCAGGTAACATTTCAGGCT 58.161 50.000 0.00 0.00 37.67 4.58
2649 2706 6.458210 CAGGTAACATTTCAGGCTTGAATTT 58.542 36.000 12.50 8.60 40.57 1.82
2654 2711 5.310451 ACATTTCAGGCTTGAATTTGCATT 58.690 33.333 12.50 0.00 42.60 3.56
2659 2716 4.467082 TCAGGCTTGAATTTGCATTACCAT 59.533 37.500 0.00 0.00 0.00 3.55
2674 2731 1.266867 ACCATGCTGGCCCCATTTTC 61.267 55.000 0.00 0.00 42.67 2.29
2675 2732 1.142314 CATGCTGGCCCCATTTTCG 59.858 57.895 0.00 0.00 0.00 3.46
2676 2733 2.724273 ATGCTGGCCCCATTTTCGC 61.724 57.895 0.00 0.00 0.00 4.70
2677 2734 3.381136 GCTGGCCCCATTTTCGCA 61.381 61.111 0.00 0.00 0.00 5.10
2678 2735 2.724273 GCTGGCCCCATTTTCGCAT 61.724 57.895 0.00 0.00 0.00 4.73
2679 2736 1.438814 CTGGCCCCATTTTCGCATC 59.561 57.895 0.00 0.00 0.00 3.91
2683 2740 1.134431 GGCCCCATTTTCGCATCAATT 60.134 47.619 0.00 0.00 0.00 2.32
2684 2741 2.631267 GCCCCATTTTCGCATCAATTT 58.369 42.857 0.00 0.00 0.00 1.82
2685 2742 3.009026 GCCCCATTTTCGCATCAATTTT 58.991 40.909 0.00 0.00 0.00 1.82
2686 2743 4.187694 GCCCCATTTTCGCATCAATTTTA 58.812 39.130 0.00 0.00 0.00 1.52
2687 2744 4.633565 GCCCCATTTTCGCATCAATTTTAA 59.366 37.500 0.00 0.00 0.00 1.52
2693 2760 5.797909 TTTCGCATCAATTTTAACACACG 57.202 34.783 0.00 0.00 0.00 4.49
2699 2766 4.217754 TCAATTTTAACACACGCTGTCC 57.782 40.909 0.00 0.00 30.29 4.02
2710 2777 0.108138 ACGCTGTCCTGTAGATTGCC 60.108 55.000 0.00 0.00 0.00 4.52
2734 2801 1.187567 ATTGCCCAAGAACTGTGCCC 61.188 55.000 0.00 0.00 0.00 5.36
2740 2807 0.798776 CAAGAACTGTGCCCGATGTC 59.201 55.000 0.00 0.00 0.00 3.06
2773 2840 4.989797 CAGGATCCTCAGATTCAGAAATCG 59.010 45.833 12.69 0.00 45.01 3.34
2895 2965 4.756642 TGATTGGTTCTGCTGAAAGTACTG 59.243 41.667 7.68 0.00 35.30 2.74
2899 2969 2.739379 GTTCTGCTGAAAGTACTGGCTC 59.261 50.000 7.68 0.00 35.30 4.70
2902 2972 3.832490 TCTGCTGAAAGTACTGGCTCTTA 59.168 43.478 0.00 0.00 35.30 2.10
2913 2984 6.821388 AGTACTGGCTCTTATTTACCTCATG 58.179 40.000 0.00 0.00 0.00 3.07
2921 2992 5.937111 TCTTATTTACCTCATGGTTAGGCC 58.063 41.667 0.00 0.00 46.05 5.19
2954 3025 2.323999 TGCATTCTGGGGGAAAATGT 57.676 45.000 0.00 0.00 37.49 2.71
2955 3026 2.618794 TGCATTCTGGGGGAAAATGTT 58.381 42.857 0.00 0.00 37.49 2.71
2958 3029 4.782156 TGCATTCTGGGGGAAAATGTTATT 59.218 37.500 0.00 0.00 37.49 1.40
2970 3041 6.782494 GGGAAAATGTTATTAGATGGGTGGAT 59.218 38.462 0.00 0.00 0.00 3.41
2971 3042 7.290014 GGGAAAATGTTATTAGATGGGTGGATT 59.710 37.037 0.00 0.00 0.00 3.01
2972 3043 8.704668 GGAAAATGTTATTAGATGGGTGGATTT 58.295 33.333 0.00 0.00 0.00 2.17
2996 3404 6.773976 TTTTTCATGAAACTTGACCTCTGT 57.226 33.333 20.35 0.00 0.00 3.41
3012 3420 3.314635 CCTCTGTTGCTGCCAGAATAATC 59.685 47.826 9.38 0.00 38.42 1.75
3022 3430 5.975939 GCTGCCAGAATAATCATTGTTCTTC 59.024 40.000 6.65 3.49 38.80 2.87
3027 3435 6.909357 CCAGAATAATCATTGTTCTTCGCTTC 59.091 38.462 6.65 0.00 38.80 3.86
3040 3455 6.481976 TGTTCTTCGCTTCTATTTCTTGACAA 59.518 34.615 0.00 0.00 0.00 3.18
3041 3456 6.467723 TCTTCGCTTCTATTTCTTGACAAC 57.532 37.500 0.00 0.00 0.00 3.32
3043 3458 6.481976 TCTTCGCTTCTATTTCTTGACAACAA 59.518 34.615 0.00 0.00 34.65 2.83
3044 3459 6.801539 TCGCTTCTATTTCTTGACAACAAT 57.198 33.333 0.00 0.00 35.37 2.71
3045 3460 6.602179 TCGCTTCTATTTCTTGACAACAATG 58.398 36.000 0.00 0.00 35.37 2.82
3046 3461 6.426633 TCGCTTCTATTTCTTGACAACAATGA 59.573 34.615 0.00 0.00 35.37 2.57
3047 3462 7.119699 TCGCTTCTATTTCTTGACAACAATGAT 59.880 33.333 0.00 0.00 35.37 2.45
3048 3463 8.390354 CGCTTCTATTTCTTGACAACAATGATA 58.610 33.333 0.00 0.00 35.37 2.15
3088 3505 1.379044 GCACCCTGCAAGTGGCTAT 60.379 57.895 16.07 0.00 44.26 2.97
3103 3520 6.018433 AGTGGCTATGTCCAAGGAATAAAT 57.982 37.500 0.00 0.00 37.96 1.40
3196 3613 3.966665 TGGAAAACCTTTCTTTGCAGGAT 59.033 39.130 0.00 0.00 31.48 3.24
3337 3754 5.623956 TGGTTCACCGAATAGATGGTAAT 57.376 39.130 0.00 0.00 36.50 1.89
3362 3779 9.942850 ATGTTCCATCGATTAACATATATGACA 57.057 29.630 24.38 8.34 40.95 3.58
3414 3832 5.884792 AGCATGATAAAGGAAGTTTGAGGAG 59.115 40.000 0.00 0.00 0.00 3.69
3423 3841 6.547930 AGGAAGTTTGAGGAGTTATAGGAC 57.452 41.667 0.00 0.00 0.00 3.85
3431 3849 7.841282 TTGAGGAGTTATAGGACATTAGGAG 57.159 40.000 0.00 0.00 0.00 3.69
3433 3851 8.053776 TGAGGAGTTATAGGACATTAGGAGTA 57.946 38.462 0.00 0.00 0.00 2.59
3434 3852 8.679725 TGAGGAGTTATAGGACATTAGGAGTAT 58.320 37.037 0.00 0.00 0.00 2.12
3435 3853 9.536510 GAGGAGTTATAGGACATTAGGAGTATT 57.463 37.037 0.00 0.00 0.00 1.89
3437 3855 9.310449 GGAGTTATAGGACATTAGGAGTATTGA 57.690 37.037 0.00 0.00 0.00 2.57
3439 3857 8.794553 AGTTATAGGACATTAGGAGTATTGACG 58.205 37.037 0.00 0.00 0.00 4.35
3440 3858 4.939052 AGGACATTAGGAGTATTGACGG 57.061 45.455 0.00 0.00 0.00 4.79
3525 3946 7.046652 CCAATGCATCTCCTGGTAATAGATAG 58.953 42.308 0.00 0.00 0.00 2.08
3563 3987 9.915629 ATACTCGAAATACTGATATTGTCTTCC 57.084 33.333 0.00 0.00 31.07 3.46
3596 4020 7.658261 TCCATGTATACAGAACCTTTATCGAG 58.342 38.462 11.91 0.00 0.00 4.04
3696 4120 2.041620 TCTAGTCAAGGGGCATTGCTTT 59.958 45.455 8.82 0.00 0.00 3.51
3874 4298 1.569653 AGTACTCCTTGCCCTGTACC 58.430 55.000 0.00 0.00 36.79 3.34
3928 4352 4.018490 TCATTGTGTGCAATCCAGCTTAT 58.982 39.130 0.00 0.00 42.91 1.73
3965 4389 7.449395 TGAAGATTTGGATTCAGAGTGATGTTT 59.551 33.333 0.00 0.00 31.93 2.83
3972 4396 5.105997 GGATTCAGAGTGATGTTTCCTTTGG 60.106 44.000 0.00 0.00 0.00 3.28
4330 4755 2.902705 TGCTGTGAAACTACCGTCTT 57.097 45.000 0.00 0.00 38.04 3.01
4429 4861 6.928348 TGGGTTCTTTAGAGTTCATAGACA 57.072 37.500 0.00 0.00 0.00 3.41
4467 4901 1.865865 ACGAGTCTGAACACGCAAAT 58.134 45.000 0.00 0.00 42.31 2.32
4476 4910 2.126228 CACGCAAATGCAGGCCTG 60.126 61.111 29.34 29.34 42.21 4.85
4568 5002 0.036164 TATGACAGTGTTTGGCCGCT 59.964 50.000 0.00 0.00 31.91 5.52
4570 5004 3.542629 GACAGTGTTTGGCCGCTGC 62.543 63.158 0.00 0.00 44.84 5.25
4574 5008 0.609131 AGTGTTTGGCCGCTGCTATT 60.609 50.000 0.00 0.00 37.74 1.73
4575 5009 0.243636 GTGTTTGGCCGCTGCTATTT 59.756 50.000 0.00 0.00 37.74 1.40
4577 5011 1.342819 TGTTTGGCCGCTGCTATTTTT 59.657 42.857 0.00 0.00 37.74 1.94
4598 5032 7.977789 TTTTTATTTTCTGAAAAGGGCCATC 57.022 32.000 19.14 1.10 33.22 3.51
4599 5033 5.675684 TTATTTTCTGAAAAGGGCCATCC 57.324 39.130 19.14 0.00 33.22 3.51
4611 5045 3.087065 CCATCCCGGGTTGGACTT 58.913 61.111 37.93 6.93 42.00 3.01
4618 5052 1.966451 CGGGTTGGACTTGAGCACC 60.966 63.158 0.00 0.00 0.00 5.01
4619 5053 1.150536 GGGTTGGACTTGAGCACCA 59.849 57.895 0.00 0.00 0.00 4.17
4678 5112 5.423015 TGCTGATGAGAAGAGTAATTGGAC 58.577 41.667 0.00 0.00 0.00 4.02
4680 5114 6.112058 GCTGATGAGAAGAGTAATTGGACTT 58.888 40.000 0.00 0.00 0.00 3.01
4685 5119 7.311092 TGAGAAGAGTAATTGGACTTTACCA 57.689 36.000 0.00 0.00 38.24 3.25
4694 5128 1.334243 TGGACTTTACCAAAAACGCCG 59.666 47.619 0.00 0.00 36.96 6.46
4709 5143 1.398390 ACGCCGAATCTTGATCTTTGC 59.602 47.619 0.00 0.00 0.00 3.68
4731 5166 6.286758 TGCTGATGAGAAGAATAGTTGGATC 58.713 40.000 0.00 0.00 0.00 3.36
4740 5175 9.449719 GAGAAGAATAGTTGGATCCTACAAAAA 57.550 33.333 25.25 10.26 0.00 1.94
4760 5195 3.375782 AACACCAAATCTGCAAAGAGC 57.624 42.857 0.00 0.00 45.96 4.09
4775 5210 5.464168 GCAAAGAGCACAACTATGAAATGT 58.536 37.500 0.00 0.00 44.79 2.71
4776 5211 5.570589 GCAAAGAGCACAACTATGAAATGTC 59.429 40.000 0.00 0.00 44.79 3.06
4777 5212 5.886960 AAGAGCACAACTATGAAATGTCC 57.113 39.130 0.00 0.00 0.00 4.02
4779 5214 6.299805 AGAGCACAACTATGAAATGTCCTA 57.700 37.500 0.00 0.00 0.00 2.94
4780 5215 6.344500 AGAGCACAACTATGAAATGTCCTAG 58.656 40.000 0.00 0.00 0.00 3.02
4781 5216 5.431765 AGCACAACTATGAAATGTCCTAGG 58.568 41.667 0.82 0.82 0.00 3.02
4796 5254 0.909610 CTAGGAGGAACCAGGCACCA 60.910 60.000 5.45 0.00 42.04 4.17
4804 5262 3.011708 AGGAACCAGGCACCAGATTTAAT 59.988 43.478 5.45 0.00 0.00 1.40
4805 5263 4.229582 AGGAACCAGGCACCAGATTTAATA 59.770 41.667 5.45 0.00 0.00 0.98
4810 5268 5.163195 ACCAGGCACCAGATTTAATAGGTAG 60.163 44.000 1.97 0.11 32.01 3.18
4817 5553 8.778358 GCACCAGATTTAATAGGTAGAATCAAG 58.222 37.037 1.97 0.00 32.35 3.02
4818 5554 9.277783 CACCAGATTTAATAGGTAGAATCAAGG 57.722 37.037 1.97 0.00 34.69 3.61
4856 5593 8.797438 AGAAAATAGAAAAATTCCAGACCTCAC 58.203 33.333 0.00 0.00 0.00 3.51
4864 5601 6.380079 AAATTCCAGACCTCACAGAAGTAT 57.620 37.500 0.00 0.00 0.00 2.12
4867 5604 2.534298 CAGACCTCACAGAAGTATGCG 58.466 52.381 0.00 0.00 0.00 4.73
4875 5612 4.627058 TCACAGAAGTATGCGAACTTTCA 58.373 39.130 5.12 0.00 39.78 2.69
4883 5620 8.443937 AGAAGTATGCGAACTTTCAGAAATTAC 58.556 33.333 5.12 0.00 39.78 1.89
4886 5623 8.784043 AGTATGCGAACTTTCAGAAATTACTTT 58.216 29.630 0.00 0.00 0.00 2.66
4887 5624 7.858052 ATGCGAACTTTCAGAAATTACTTTG 57.142 32.000 0.00 0.00 0.00 2.77
4895 5632 9.546428 ACTTTCAGAAATTACTTTGGATTTTGG 57.454 29.630 0.00 0.00 0.00 3.28
4969 5706 6.091986 TGTTTGAATCTGGTTTGAAGTTTTGC 59.908 34.615 0.00 0.00 0.00 3.68
5012 5749 8.894768 ATTTTTGATAACCACCGAAATTTTCA 57.105 26.923 9.66 0.00 0.00 2.69
5016 5753 8.718102 TTGATAACCACCGAAATTTTCAAAAA 57.282 26.923 9.66 0.00 0.00 1.94
5051 5788 9.853177 AAAATTTGAACCCTAGATATAGTGAGG 57.147 33.333 0.00 0.00 0.00 3.86
5052 5789 8.568617 AATTTGAACCCTAGATATAGTGAGGT 57.431 34.615 0.00 0.00 0.00 3.85
5053 5790 7.989947 TTTGAACCCTAGATATAGTGAGGTT 57.010 36.000 6.32 6.32 38.78 3.50
5057 5794 7.989947 AACCCTAGATATAGTGAGGTTCAAA 57.010 36.000 0.00 0.00 30.44 2.69
5058 5795 7.362802 ACCCTAGATATAGTGAGGTTCAAAC 57.637 40.000 0.00 0.00 0.00 2.93
5059 5796 7.133483 ACCCTAGATATAGTGAGGTTCAAACT 58.867 38.462 0.00 0.00 0.00 2.66
5060 5797 7.624077 ACCCTAGATATAGTGAGGTTCAAACTT 59.376 37.037 0.00 0.00 0.00 2.66
5075 5812 6.959639 TTCAAACTTTGAACCTTAGAGCAT 57.040 33.333 12.12 0.00 44.21 3.79
5076 5813 6.560253 TCAAACTTTGAACCTTAGAGCATC 57.440 37.500 1.47 0.00 36.59 3.91
5077 5814 6.299141 TCAAACTTTGAACCTTAGAGCATCT 58.701 36.000 1.47 0.00 42.85 2.90
5078 5815 6.428159 TCAAACTTTGAACCTTAGAGCATCTC 59.572 38.462 1.47 0.00 40.37 2.75
5079 5816 8.438047 TCAAACTTTGAACCTTAGAGCATCTCC 61.438 40.741 1.47 0.00 40.37 3.71
5108 5845 2.582436 CCCGAGGAGGCGCTAAAA 59.418 61.111 7.64 0.00 39.21 1.52
5109 5846 1.078708 CCCGAGGAGGCGCTAAAAA 60.079 57.895 7.64 0.00 39.21 1.94
5110 5847 0.463833 CCCGAGGAGGCGCTAAAAAT 60.464 55.000 7.64 0.00 39.21 1.82
5117 5854 2.411701 GCGCTAAAAATCGCCCCC 59.588 61.111 0.00 0.00 45.01 5.40
5118 5855 2.119029 GCGCTAAAAATCGCCCCCT 61.119 57.895 0.00 0.00 45.01 4.79
5119 5856 1.727467 CGCTAAAAATCGCCCCCTG 59.273 57.895 0.00 0.00 0.00 4.45
5120 5857 1.724582 CGCTAAAAATCGCCCCCTGG 61.725 60.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.169978 GGTACTGATGTGGGGTAGAACC 59.830 54.545 0.00 0.00 37.60 3.62
8 9 2.835764 TGGTACTGATGTGGGGTAGAAC 59.164 50.000 0.00 0.00 0.00 3.01
10 11 2.932184 TGGTACTGATGTGGGGTAGA 57.068 50.000 0.00 0.00 0.00 2.59
11 12 4.202326 GGTTATGGTACTGATGTGGGGTAG 60.202 50.000 0.00 0.00 0.00 3.18
12 13 3.712733 GGTTATGGTACTGATGTGGGGTA 59.287 47.826 0.00 0.00 0.00 3.69
13 14 2.508300 GGTTATGGTACTGATGTGGGGT 59.492 50.000 0.00 0.00 0.00 4.95
14 15 2.777692 AGGTTATGGTACTGATGTGGGG 59.222 50.000 0.00 0.00 0.00 4.96
15 16 5.306937 TGATAGGTTATGGTACTGATGTGGG 59.693 44.000 0.00 0.00 0.00 4.61
16 17 6.419484 TGATAGGTTATGGTACTGATGTGG 57.581 41.667 0.00 0.00 0.00 4.17
17 18 7.726216 TCTTGATAGGTTATGGTACTGATGTG 58.274 38.462 0.00 0.00 0.00 3.21
18 19 7.914427 TCTTGATAGGTTATGGTACTGATGT 57.086 36.000 0.00 0.00 0.00 3.06
19 20 9.429359 GATTCTTGATAGGTTATGGTACTGATG 57.571 37.037 0.00 0.00 0.00 3.07
20 21 9.159254 TGATTCTTGATAGGTTATGGTACTGAT 57.841 33.333 0.00 0.00 0.00 2.90
21 22 8.547481 TGATTCTTGATAGGTTATGGTACTGA 57.453 34.615 0.00 0.00 0.00 3.41
51 52 6.627671 GTCGCAGTTTTAGTACAACTTCAAAG 59.372 38.462 0.00 0.00 31.83 2.77
55 56 5.646467 TGTCGCAGTTTTAGTACAACTTC 57.354 39.130 0.00 0.00 31.83 3.01
64 65 9.599322 GATCCATATTAATTGTCGCAGTTTTAG 57.401 33.333 0.00 0.00 0.00 1.85
71 72 4.888917 TCCGATCCATATTAATTGTCGCA 58.111 39.130 0.00 0.00 0.00 5.10
74 75 6.049955 TCCCTCCGATCCATATTAATTGTC 57.950 41.667 0.00 0.00 0.00 3.18
75 76 5.548056 ACTCCCTCCGATCCATATTAATTGT 59.452 40.000 0.00 0.00 0.00 2.71
76 77 6.054860 ACTCCCTCCGATCCATATTAATTG 57.945 41.667 0.00 0.00 0.00 2.32
77 78 7.623677 TGATACTCCCTCCGATCCATATTAATT 59.376 37.037 0.00 0.00 0.00 1.40
78 79 7.132805 TGATACTCCCTCCGATCCATATTAAT 58.867 38.462 0.00 0.00 0.00 1.40
79 80 6.499436 TGATACTCCCTCCGATCCATATTAA 58.501 40.000 0.00 0.00 0.00 1.40
80 81 6.087276 TGATACTCCCTCCGATCCATATTA 57.913 41.667 0.00 0.00 0.00 0.98
83 84 4.609866 ATGATACTCCCTCCGATCCATA 57.390 45.455 0.00 0.00 0.00 2.74
87 88 6.531503 TCAAATATGATACTCCCTCCGATC 57.468 41.667 0.00 0.00 0.00 3.69
96 97 9.102757 ACACACAAGACATCAAATATGATACTC 57.897 33.333 0.00 0.00 44.53 2.59
111 112 8.330466 TCTTTTTAAAGAAGACACACAAGACA 57.670 30.769 2.54 0.00 41.75 3.41
140 141 1.263217 CCGTCTTTCACCAAGGAAACG 59.737 52.381 0.00 0.00 33.48 3.60
141 142 1.001706 GCCGTCTTTCACCAAGGAAAC 60.002 52.381 0.00 0.00 33.48 2.78
187 204 1.800805 ACACATCAAGGCTCACGAAG 58.199 50.000 0.00 0.00 0.00 3.79
191 208 6.128445 GCATATGTATACACATCAAGGCTCAC 60.128 42.308 7.96 0.00 44.42 3.51
194 211 4.931601 CGCATATGTATACACATCAAGGCT 59.068 41.667 7.96 0.00 44.42 4.58
195 212 4.690748 ACGCATATGTATACACATCAAGGC 59.309 41.667 7.96 0.93 44.42 4.35
196 213 5.120674 CCACGCATATGTATACACATCAAGG 59.879 44.000 7.96 1.93 44.42 3.61
197 214 5.925969 TCCACGCATATGTATACACATCAAG 59.074 40.000 7.96 1.45 44.42 3.02
198 215 5.848406 TCCACGCATATGTATACACATCAA 58.152 37.500 7.96 0.00 44.42 2.57
199 216 5.461032 TCCACGCATATGTATACACATCA 57.539 39.130 7.96 0.00 44.42 3.07
200 217 6.035005 GTCATCCACGCATATGTATACACATC 59.965 42.308 7.96 0.00 44.42 3.06
201 218 9.359853 TGGTCATCCACGCATATGTATACACAT 62.360 40.741 7.96 0.00 42.47 3.21
202 219 5.227152 GTCATCCACGCATATGTATACACA 58.773 41.667 7.96 0.00 39.52 3.72
203 220 4.625742 GGTCATCCACGCATATGTATACAC 59.374 45.833 7.96 0.00 0.00 2.90
204 221 4.282195 TGGTCATCCACGCATATGTATACA 59.718 41.667 8.27 8.27 39.03 2.29
205 222 4.816392 TGGTCATCCACGCATATGTATAC 58.184 43.478 4.29 0.00 39.03 1.47
234 251 7.588512 ACACATTGTTTCTTAAGATTCTGAGC 58.411 34.615 5.89 0.00 0.00 4.26
290 307 2.693074 TCTTGTTTGCCCTCCTGAAAAC 59.307 45.455 0.00 0.00 33.98 2.43
293 310 2.978156 ATCTTGTTTGCCCTCCTGAA 57.022 45.000 0.00 0.00 0.00 3.02
294 311 2.912956 AGTATCTTGTTTGCCCTCCTGA 59.087 45.455 0.00 0.00 0.00 3.86
295 312 3.012518 CAGTATCTTGTTTGCCCTCCTG 58.987 50.000 0.00 0.00 0.00 3.86
297 314 3.073274 ACAGTATCTTGTTTGCCCTCC 57.927 47.619 0.00 0.00 0.00 4.30
298 315 4.035675 GCATACAGTATCTTGTTTGCCCTC 59.964 45.833 9.45 0.00 44.79 4.30
299 316 3.947834 GCATACAGTATCTTGTTTGCCCT 59.052 43.478 9.45 0.00 44.79 5.19
300 317 4.292977 GCATACAGTATCTTGTTTGCCC 57.707 45.455 9.45 0.00 44.79 5.36
303 320 8.081633 TGGAAAAAGCATACAGTATCTTGTTTG 58.918 33.333 8.45 0.00 34.45 2.93
304 321 8.082242 GTGGAAAAAGCATACAGTATCTTGTTT 58.918 33.333 8.45 9.03 32.56 2.83
305 322 7.230510 TGTGGAAAAAGCATACAGTATCTTGTT 59.769 33.333 7.42 7.42 32.56 2.83
306 323 6.714810 TGTGGAAAAAGCATACAGTATCTTGT 59.285 34.615 0.00 0.00 35.09 3.16
307 324 7.144722 TGTGGAAAAAGCATACAGTATCTTG 57.855 36.000 0.00 0.00 0.00 3.02
308 325 7.759489 TTGTGGAAAAAGCATACAGTATCTT 57.241 32.000 0.00 0.00 0.00 2.40
309 326 7.759489 TTTGTGGAAAAAGCATACAGTATCT 57.241 32.000 0.00 0.00 0.00 1.98
310 327 7.702348 GGATTTGTGGAAAAAGCATACAGTATC 59.298 37.037 0.00 0.00 0.00 2.24
321 338 4.584327 ACGAAGGGATTTGTGGAAAAAG 57.416 40.909 0.00 0.00 0.00 2.27
322 339 5.221283 GGTAACGAAGGGATTTGTGGAAAAA 60.221 40.000 0.00 0.00 0.00 1.94
403 425 1.003355 ATGAACGACACCTGGCCTG 60.003 57.895 3.32 2.54 0.00 4.85
509 531 1.772819 CGGGAATGGGGATCTGAGGG 61.773 65.000 0.00 0.00 0.00 4.30
637 659 1.202417 GGATCGCCGAAATCAGTGAGA 60.202 52.381 0.00 0.00 0.00 3.27
874 897 6.230472 CCCGAAGTATCCACATCAATATGAA 58.770 40.000 0.00 0.00 36.54 2.57
875 898 5.279960 CCCCGAAGTATCCACATCAATATGA 60.280 44.000 0.00 0.00 36.54 2.15
881 904 2.168458 TCCCCGAAGTATCCACATCA 57.832 50.000 0.00 0.00 0.00 3.07
911 934 3.942377 ATTCGGCCCTGCATGCACA 62.942 57.895 18.46 0.00 0.00 4.57
968 991 1.519455 GGTGGAGAGCAACCGATCG 60.519 63.158 8.51 8.51 30.99 3.69
1034 1060 0.449388 GAAGCGCCATTCAGAGTTGG 59.551 55.000 2.29 0.00 36.03 3.77
1041 1067 0.250684 TCTGGTTGAAGCGCCATTCA 60.251 50.000 2.29 5.76 37.41 2.57
1086 1112 0.394565 AGTTATGCGAGATGGAGGGC 59.605 55.000 0.00 0.00 0.00 5.19
1088 1114 1.001406 GGGAGTTATGCGAGATGGAGG 59.999 57.143 0.00 0.00 0.00 4.30
1089 1115 1.001406 GGGGAGTTATGCGAGATGGAG 59.999 57.143 0.00 0.00 0.00 3.86
1090 1116 1.048601 GGGGAGTTATGCGAGATGGA 58.951 55.000 0.00 0.00 0.00 3.41
1091 1117 1.051812 AGGGGAGTTATGCGAGATGG 58.948 55.000 0.00 0.00 0.00 3.51
1092 1118 2.894126 AGTAGGGGAGTTATGCGAGATG 59.106 50.000 0.00 0.00 0.00 2.90
1093 1119 3.246416 AGTAGGGGAGTTATGCGAGAT 57.754 47.619 0.00 0.00 0.00 2.75
1094 1120 2.750141 AGTAGGGGAGTTATGCGAGA 57.250 50.000 0.00 0.00 0.00 4.04
1095 1121 4.156922 CAGATAGTAGGGGAGTTATGCGAG 59.843 50.000 0.00 0.00 0.00 5.03
1096 1122 4.079970 CAGATAGTAGGGGAGTTATGCGA 58.920 47.826 0.00 0.00 0.00 5.10
1097 1123 3.827302 ACAGATAGTAGGGGAGTTATGCG 59.173 47.826 0.00 0.00 0.00 4.73
1098 1124 5.810080 AACAGATAGTAGGGGAGTTATGC 57.190 43.478 0.00 0.00 0.00 3.14
1120 1146 5.964758 ACTGCACACATTCAGAAAGAAAAA 58.035 33.333 0.00 0.00 40.22 1.94
1121 1147 5.125257 TGACTGCACACATTCAGAAAGAAAA 59.875 36.000 0.00 0.00 40.22 2.29
1122 1148 4.639755 TGACTGCACACATTCAGAAAGAAA 59.360 37.500 0.00 0.00 40.22 2.52
1123 1149 4.198530 TGACTGCACACATTCAGAAAGAA 58.801 39.130 0.00 0.00 41.28 2.52
1124 1150 3.807553 TGACTGCACACATTCAGAAAGA 58.192 40.909 0.00 0.00 31.15 2.52
1136 1162 5.424757 GGGTGTATTATTACTGACTGCACA 58.575 41.667 0.00 0.00 0.00 4.57
1144 1170 7.335627 TCTTTGTGAGGGGTGTATTATTACTG 58.664 38.462 0.00 0.00 0.00 2.74
1145 1171 7.504926 TCTTTGTGAGGGGTGTATTATTACT 57.495 36.000 0.00 0.00 0.00 2.24
1146 1172 7.282450 CCTTCTTTGTGAGGGGTGTATTATTAC 59.718 40.741 0.00 0.00 38.18 1.89
1152 1178 3.256704 TCCTTCTTTGTGAGGGGTGTAT 58.743 45.455 0.00 0.00 41.74 2.29
1169 1195 9.614792 CCTAACTGTTAAATTATGCTACTCCTT 57.385 33.333 1.46 0.00 0.00 3.36
1170 1196 8.989131 TCCTAACTGTTAAATTATGCTACTCCT 58.011 33.333 1.46 0.00 0.00 3.69
1171 1197 9.609346 TTCCTAACTGTTAAATTATGCTACTCC 57.391 33.333 1.46 0.00 0.00 3.85
1271 1297 2.215196 GTAAGCGGACAGAAACCAACA 58.785 47.619 0.00 0.00 0.00 3.33
1277 1303 2.294233 ACACTACGTAAGCGGACAGAAA 59.706 45.455 0.00 0.00 43.45 2.52
1286 1312 3.572604 AGACAGGAACACTACGTAAGC 57.427 47.619 0.00 0.00 45.62 3.09
1576 1602 3.130869 TCATATGTCACAAAGCAATGCCC 59.869 43.478 0.00 0.00 0.00 5.36
1611 1638 7.065085 CCTGAACAAGTAGAATATCACCAGTTG 59.935 40.741 0.00 0.00 0.00 3.16
1688 1715 4.391830 GCTACTTGTCGATGGTGAAATTGA 59.608 41.667 0.00 0.00 0.00 2.57
1738 1765 3.115390 TGCTCTAGCCCCAGAAACTAAT 58.885 45.455 0.00 0.00 41.18 1.73
1747 1774 1.210478 GAATCTGTTGCTCTAGCCCCA 59.790 52.381 0.00 0.00 41.18 4.96
1936 1966 8.772705 GTTGCAATGAAAATGACCAAATAGAAA 58.227 29.630 0.59 0.00 0.00 2.52
1954 1984 4.387598 TCTTTTCCATTTGGGTTGCAATG 58.612 39.130 0.59 0.00 38.11 2.82
2009 2039 5.013568 TGTCCGAGAAAACAACTCACTAA 57.986 39.130 0.00 0.00 34.47 2.24
2011 2041 3.458189 CTGTCCGAGAAAACAACTCACT 58.542 45.455 0.00 0.00 34.47 3.41
2023 2053 3.096852 TGAGGAAAATAGCTGTCCGAGA 58.903 45.455 0.00 0.00 36.49 4.04
2025 2055 2.832129 AGTGAGGAAAATAGCTGTCCGA 59.168 45.455 0.00 0.00 36.49 4.55
2027 2057 4.327680 ACAAGTGAGGAAAATAGCTGTCC 58.672 43.478 0.00 0.00 0.00 4.02
2040 2071 4.556233 TGAGAACATAACGACAAGTGAGG 58.444 43.478 0.00 0.00 0.00 3.86
2084 2115 6.088824 CCAACTCAGCACTACAATCAATTTC 58.911 40.000 0.00 0.00 0.00 2.17
2091 2122 1.004745 CCCCCAACTCAGCACTACAAT 59.995 52.381 0.00 0.00 0.00 2.71
2097 2128 1.818674 CAATTACCCCCAACTCAGCAC 59.181 52.381 0.00 0.00 0.00 4.40
2099 2130 1.818674 CACAATTACCCCCAACTCAGC 59.181 52.381 0.00 0.00 0.00 4.26
2104 2135 8.755028 AGTATAAAATTCACAATTACCCCCAAC 58.245 33.333 0.00 0.00 0.00 3.77
2183 2232 6.530019 AACTAGAAAAATATGGTGCCCTTG 57.470 37.500 0.00 0.00 0.00 3.61
2212 2261 7.506328 ACTACTGTTAAATCCAACCAGAAAC 57.494 36.000 0.00 0.00 0.00 2.78
2219 2271 9.143631 ACGTATACAACTACTGTTAAATCCAAC 57.856 33.333 3.32 0.00 39.64 3.77
2228 2280 7.206981 AGTGTACACGTATACAACTACTGTT 57.793 36.000 19.93 0.00 36.83 3.16
2231 2283 7.604164 ACACTAGTGTACACGTATACAACTACT 59.396 37.037 26.91 4.26 42.90 2.57
2254 2306 9.529325 AGCTACCAGAATTTAAAAAGAAAACAC 57.471 29.630 0.00 0.00 0.00 3.32
2261 2316 7.657336 TGGACAAGCTACCAGAATTTAAAAAG 58.343 34.615 3.56 0.00 0.00 2.27
2262 2317 7.589958 TGGACAAGCTACCAGAATTTAAAAA 57.410 32.000 3.56 0.00 0.00 1.94
2274 2329 3.944087 ACTGAATTCTGGACAAGCTACC 58.056 45.455 15.76 0.00 0.00 3.18
2275 2330 6.818644 TGATAACTGAATTCTGGACAAGCTAC 59.181 38.462 15.76 0.49 0.00 3.58
2340 2397 0.727398 GCACGCCACTCCAAGATAAC 59.273 55.000 0.00 0.00 0.00 1.89
2659 2716 3.381136 GCGAAAATGGGGCCAGCA 61.381 61.111 4.39 0.00 0.00 4.41
2661 2718 1.321805 TGATGCGAAAATGGGGCCAG 61.322 55.000 4.39 0.00 0.00 4.85
2662 2719 0.902048 TTGATGCGAAAATGGGGCCA 60.902 50.000 4.39 0.00 0.00 5.36
2663 2720 0.465287 ATTGATGCGAAAATGGGGCC 59.535 50.000 0.00 0.00 0.00 5.80
2674 2731 3.057999 CAGCGTGTGTTAAAATTGATGCG 59.942 43.478 0.00 0.00 0.00 4.73
2675 2732 3.980775 ACAGCGTGTGTTAAAATTGATGC 59.019 39.130 0.00 0.00 34.94 3.91
2676 2733 4.616802 GGACAGCGTGTGTTAAAATTGATG 59.383 41.667 0.00 0.00 40.56 3.07
2677 2734 4.518970 AGGACAGCGTGTGTTAAAATTGAT 59.481 37.500 0.00 0.00 40.56 2.57
2678 2735 3.880490 AGGACAGCGTGTGTTAAAATTGA 59.120 39.130 0.00 0.00 40.56 2.57
2679 2736 3.974401 CAGGACAGCGTGTGTTAAAATTG 59.026 43.478 0.00 0.00 40.56 2.32
2683 2740 2.319136 ACAGGACAGCGTGTGTTAAA 57.681 45.000 0.00 0.00 40.56 1.52
2684 2741 2.624364 TCTACAGGACAGCGTGTGTTAA 59.376 45.455 0.00 0.00 42.55 2.01
2685 2742 2.232399 TCTACAGGACAGCGTGTGTTA 58.768 47.619 0.00 0.00 42.55 2.41
2686 2743 1.037493 TCTACAGGACAGCGTGTGTT 58.963 50.000 0.00 0.00 42.55 3.32
2687 2744 1.257743 ATCTACAGGACAGCGTGTGT 58.742 50.000 0.00 0.00 42.55 3.72
2693 2760 0.108138 ACGGCAATCTACAGGACAGC 60.108 55.000 0.00 0.00 0.00 4.40
2699 2766 2.223340 GGCAATCAACGGCAATCTACAG 60.223 50.000 0.00 0.00 0.00 2.74
2710 2777 1.608590 ACAGTTCTTGGGCAATCAACG 59.391 47.619 0.00 0.00 0.00 4.10
2734 2801 4.201950 GGATCCTGGAAAAATGTGACATCG 60.202 45.833 3.84 0.00 0.00 3.84
2740 2807 4.592942 TCTGAGGATCCTGGAAAAATGTG 58.407 43.478 22.02 0.00 0.00 3.21
2773 2840 4.627467 CAGGTATATAAGATGCGCTCCAAC 59.373 45.833 9.73 0.00 0.00 3.77
2860 2930 5.393352 GCAGAACCAATCAGAATGCATGTTA 60.393 40.000 0.00 0.00 34.76 2.41
2913 2984 0.895559 AAGCAGTGCAAGGCCTAACC 60.896 55.000 19.20 0.00 39.61 2.85
2945 3016 6.133356 TCCACCCATCTAATAACATTTTCCC 58.867 40.000 0.00 0.00 0.00 3.97
2996 3404 5.419788 AGAACAATGATTATTCTGGCAGCAA 59.580 36.000 10.34 5.74 31.47 3.91
3012 3420 7.479916 GTCAAGAAATAGAAGCGAAGAACAATG 59.520 37.037 0.00 0.00 0.00 2.82
3022 3430 6.602179 TCATTGTTGTCAAGAAATAGAAGCG 58.398 36.000 0.00 0.00 36.97 4.68
3027 3435 9.166173 TGAGGTATCATTGTTGTCAAGAAATAG 57.834 33.333 0.00 0.00 36.97 1.73
3044 3459 2.580322 TGGCCCTGAAAATGAGGTATCA 59.420 45.455 0.00 0.00 40.50 2.15
3045 3460 3.297134 TGGCCCTGAAAATGAGGTATC 57.703 47.619 0.00 0.00 0.00 2.24
3046 3461 3.437052 GGATGGCCCTGAAAATGAGGTAT 60.437 47.826 0.00 0.00 0.00 2.73
3047 3462 2.091885 GGATGGCCCTGAAAATGAGGTA 60.092 50.000 0.00 0.00 0.00 3.08
3048 3463 1.342374 GGATGGCCCTGAAAATGAGGT 60.342 52.381 0.00 0.00 0.00 3.85
3103 3520 0.390124 AGAACGGCGTAACAAGGTCA 59.610 50.000 15.20 0.00 0.00 4.02
3115 3532 3.626028 AAGAACACAATCAAGAACGGC 57.374 42.857 0.00 0.00 0.00 5.68
3196 3613 5.639506 GCAGTCTGCTTCTATGTTAGAAACA 59.360 40.000 17.89 0.00 43.63 2.83
3350 3767 6.959606 ATAGGAAGGGCTGTCATATATGTT 57.040 37.500 12.42 0.00 0.00 2.71
3409 3827 9.536510 AATACTCCTAATGTCCTATAACTCCTC 57.463 37.037 0.00 0.00 0.00 3.71
3414 3832 8.027771 CCGTCAATACTCCTAATGTCCTATAAC 58.972 40.741 0.00 0.00 0.00 1.89
3462 3883 9.691362 AATGACAAGGTATTTAACACAATGTTC 57.309 29.630 0.00 0.00 40.22 3.18
3476 3897 6.263168 GGCATGCTAAACTAATGACAAGGTAT 59.737 38.462 18.92 0.00 29.25 2.73
3506 3927 6.849085 ACTGCTATCTATTACCAGGAGATG 57.151 41.667 0.00 0.00 32.27 2.90
3525 3946 2.010145 TCGAGTATCAGCCAAACTGC 57.990 50.000 0.00 0.00 46.76 4.40
3560 3984 5.596772 TCTGTATACATGGAAGATGTCGGAA 59.403 40.000 5.91 0.00 33.76 4.30
3563 3987 5.692204 GGTTCTGTATACATGGAAGATGTCG 59.308 44.000 5.91 0.00 33.76 4.35
3596 4020 1.282157 ACCCTTGTTCCTCTATGTGCC 59.718 52.381 0.00 0.00 0.00 5.01
3696 4120 6.095300 GGGACATCAATGTAAACATCACATGA 59.905 38.462 0.00 6.72 41.95 3.07
3874 4298 0.800683 TACGAGACAGCCGCAAATCG 60.801 55.000 0.00 0.00 36.32 3.34
3890 4314 5.153513 CACAATGAAAACAGGGAACATACG 58.846 41.667 0.00 0.00 0.00 3.06
3928 4352 4.996793 TCCAAATCTTCAGTGGAAATCCA 58.003 39.130 0.00 0.00 45.30 3.41
3940 4364 6.998968 ACATCACTCTGAATCCAAATCTTC 57.001 37.500 0.00 0.00 0.00 2.87
3965 4389 1.075536 GGGGAAGAAAGAGCCAAAGGA 59.924 52.381 0.00 0.00 0.00 3.36
3972 4396 0.402121 ACCACTGGGGAAGAAAGAGC 59.598 55.000 1.10 0.00 41.15 4.09
4311 4736 2.479837 CAAGACGGTAGTTTCACAGCA 58.520 47.619 0.00 0.00 0.00 4.41
4378 4803 6.373216 CACAAAATGGCCATCAGATTTGAAAT 59.627 34.615 32.66 17.07 38.45 2.17
4404 4836 7.159372 TGTCTATGAACTCTAAAGAACCCAAC 58.841 38.462 0.00 0.00 0.00 3.77
4408 4840 9.274206 AGTTTTGTCTATGAACTCTAAAGAACC 57.726 33.333 0.00 0.00 0.00 3.62
4429 4861 7.333672 AGACTCGTAACAGTTTCAGAAAGTTTT 59.666 33.333 0.00 4.15 0.00 2.43
4467 4901 2.848679 TGTGAGACCAGGCCTGCA 60.849 61.111 28.39 16.87 0.00 4.41
4540 4974 7.375053 GGCCAAACACTGTCATAAAATTCTAA 58.625 34.615 0.00 0.00 0.00 2.10
4541 4975 6.348950 CGGCCAAACACTGTCATAAAATTCTA 60.349 38.462 2.24 0.00 0.00 2.10
4545 4979 3.613910 GCGGCCAAACACTGTCATAAAAT 60.614 43.478 2.24 0.00 0.00 1.82
4548 4982 0.878416 GCGGCCAAACACTGTCATAA 59.122 50.000 2.24 0.00 0.00 1.90
4574 5008 6.939730 GGATGGCCCTTTTCAGAAAATAAAAA 59.060 34.615 8.81 0.00 0.00 1.94
4575 5009 6.472016 GGATGGCCCTTTTCAGAAAATAAAA 58.528 36.000 8.81 0.00 0.00 1.52
4577 5011 5.675684 GGATGGCCCTTTTCAGAAAATAA 57.324 39.130 8.81 0.00 0.00 1.40
4592 5026 4.815108 GTCCAACCCGGGATGGCC 62.815 72.222 38.40 28.45 39.62 5.36
4593 5027 3.282374 AAGTCCAACCCGGGATGGC 62.282 63.158 38.40 31.71 39.62 4.40
4594 5028 1.378514 CAAGTCCAACCCGGGATGG 60.379 63.158 37.76 37.76 39.62 3.51
4595 5029 0.392998 CTCAAGTCCAACCCGGGATG 60.393 60.000 32.02 27.23 39.62 3.51
4596 5030 1.991230 CTCAAGTCCAACCCGGGAT 59.009 57.895 32.02 14.52 39.62 3.85
4597 5031 2.890766 GCTCAAGTCCAACCCGGGA 61.891 63.158 32.02 0.00 34.36 5.14
4598 5032 2.359975 GCTCAAGTCCAACCCGGG 60.360 66.667 22.25 22.25 34.36 5.73
4599 5033 1.966451 GTGCTCAAGTCCAACCCGG 60.966 63.158 0.00 0.00 0.00 5.73
4600 5034 1.966451 GGTGCTCAAGTCCAACCCG 60.966 63.158 0.00 0.00 0.00 5.28
4601 5035 0.890996 CTGGTGCTCAAGTCCAACCC 60.891 60.000 0.00 0.00 0.00 4.11
4602 5036 0.108585 TCTGGTGCTCAAGTCCAACC 59.891 55.000 0.00 0.00 0.00 3.77
4603 5037 1.230324 GTCTGGTGCTCAAGTCCAAC 58.770 55.000 0.00 0.00 0.00 3.77
4604 5038 0.836606 TGTCTGGTGCTCAAGTCCAA 59.163 50.000 0.00 0.00 0.00 3.53
4618 5052 1.073216 CGCAGCTAACGACCTGTCTG 61.073 60.000 2.25 0.00 0.00 3.51
4619 5053 1.213013 CGCAGCTAACGACCTGTCT 59.787 57.895 2.25 0.00 0.00 3.41
4639 5073 5.297527 TCATCAGCAAATATCAGCGAAATGT 59.702 36.000 0.00 0.00 35.48 2.71
4657 5091 9.092876 GTAAAGTCCAATTACTCTTCTCATCAG 57.907 37.037 0.00 0.00 31.92 2.90
4678 5112 4.155310 AGATTCGGCGTTTTTGGTAAAG 57.845 40.909 6.85 0.00 0.00 1.85
4680 5114 3.564644 TCAAGATTCGGCGTTTTTGGTAA 59.435 39.130 6.85 0.00 0.00 2.85
4685 5119 4.766404 AAGATCAAGATTCGGCGTTTTT 57.234 36.364 6.85 0.00 0.00 1.94
4694 5128 6.922247 TCTCATCAGCAAAGATCAAGATTC 57.078 37.500 0.00 0.00 0.00 2.52
4709 5143 7.065120 AGGATCCAACTATTCTTCTCATCAG 57.935 40.000 15.82 0.00 0.00 2.90
4740 5175 3.375782 GCTCTTTGCAGATTTGGTGTT 57.624 42.857 0.00 0.00 42.31 3.32
4753 5188 6.072286 AGGACATTTCATAGTTGTGCTCTTTG 60.072 38.462 0.00 0.00 37.47 2.77
4754 5189 6.006449 AGGACATTTCATAGTTGTGCTCTTT 58.994 36.000 0.00 0.00 37.47 2.52
4755 5190 5.564550 AGGACATTTCATAGTTGTGCTCTT 58.435 37.500 0.00 0.00 37.47 2.85
4756 5191 5.171339 AGGACATTTCATAGTTGTGCTCT 57.829 39.130 0.00 0.00 37.47 4.09
4757 5192 5.525378 CCTAGGACATTTCATAGTTGTGCTC 59.475 44.000 1.05 0.00 40.58 4.26
4758 5193 5.189736 TCCTAGGACATTTCATAGTTGTGCT 59.810 40.000 7.62 2.05 43.29 4.40
4759 5194 5.428253 TCCTAGGACATTTCATAGTTGTGC 58.572 41.667 7.62 0.00 34.82 4.57
4760 5195 6.051717 CCTCCTAGGACATTTCATAGTTGTG 58.948 44.000 7.62 0.00 37.67 3.33
4762 5197 6.485830 TCCTCCTAGGACATTTCATAGTTG 57.514 41.667 7.62 0.00 40.06 3.16
4763 5198 6.126739 GGTTCCTCCTAGGACATTTCATAGTT 60.127 42.308 7.62 0.00 45.78 2.24
4764 5199 5.367060 GGTTCCTCCTAGGACATTTCATAGT 59.633 44.000 7.62 0.00 45.78 2.12
4765 5200 5.366768 TGGTTCCTCCTAGGACATTTCATAG 59.633 44.000 7.62 0.00 45.78 2.23
4766 5201 5.285401 TGGTTCCTCCTAGGACATTTCATA 58.715 41.667 7.62 0.00 45.78 2.15
4767 5202 4.111577 TGGTTCCTCCTAGGACATTTCAT 58.888 43.478 7.62 0.00 45.78 2.57
4768 5203 3.519510 CTGGTTCCTCCTAGGACATTTCA 59.480 47.826 7.62 3.47 45.78 2.69
4769 5204 3.118223 CCTGGTTCCTCCTAGGACATTTC 60.118 52.174 7.62 0.00 45.78 2.17
4771 5206 2.482494 CCTGGTTCCTCCTAGGACATT 58.518 52.381 7.62 0.00 45.78 2.71
4772 5207 1.972207 GCCTGGTTCCTCCTAGGACAT 60.972 57.143 7.62 0.00 45.78 3.06
4773 5208 0.617820 GCCTGGTTCCTCCTAGGACA 60.618 60.000 7.62 2.88 45.78 4.02
4775 5210 0.617820 GTGCCTGGTTCCTCCTAGGA 60.618 60.000 11.98 11.98 44.10 2.94
4776 5211 1.627297 GGTGCCTGGTTCCTCCTAGG 61.627 65.000 0.82 0.82 37.47 3.02
4777 5212 0.909610 TGGTGCCTGGTTCCTCCTAG 60.910 60.000 9.81 0.00 37.07 3.02
4779 5214 2.121963 TGGTGCCTGGTTCCTCCT 60.122 61.111 9.81 0.00 37.07 3.69
4780 5215 1.566298 ATCTGGTGCCTGGTTCCTCC 61.566 60.000 9.81 0.00 0.00 4.30
4781 5216 0.329596 AATCTGGTGCCTGGTTCCTC 59.670 55.000 9.81 0.00 0.00 3.71
4789 5247 6.824958 TTCTACCTATTAAATCTGGTGCCT 57.175 37.500 0.00 0.00 34.33 4.75
4791 5249 8.677148 TTGATTCTACCTATTAAATCTGGTGC 57.323 34.615 0.00 0.00 34.33 5.01
4828 5564 8.712228 AGGTCTGGAATTTTTCTATTTTCTGT 57.288 30.769 0.00 0.00 0.00 3.41
4831 5567 8.576442 TGTGAGGTCTGGAATTTTTCTATTTTC 58.424 33.333 0.00 0.00 0.00 2.29
4835 5571 7.020827 TCTGTGAGGTCTGGAATTTTTCTAT 57.979 36.000 0.00 0.00 0.00 1.98
4836 5572 6.433847 TCTGTGAGGTCTGGAATTTTTCTA 57.566 37.500 0.00 0.00 0.00 2.10
4837 5573 5.310409 TCTGTGAGGTCTGGAATTTTTCT 57.690 39.130 0.00 0.00 0.00 2.52
4838 5574 5.532779 ACTTCTGTGAGGTCTGGAATTTTTC 59.467 40.000 0.00 0.00 0.00 2.29
4839 5575 5.449553 ACTTCTGTGAGGTCTGGAATTTTT 58.550 37.500 0.00 0.00 0.00 1.94
4856 5593 5.845985 TTCTGAAAGTTCGCATACTTCTG 57.154 39.130 1.36 1.55 37.37 3.02
4864 5601 6.038825 TCCAAAGTAATTTCTGAAAGTTCGCA 59.961 34.615 8.47 0.00 33.76 5.10
4946 5683 5.290643 CGCAAAACTTCAAACCAGATTCAAA 59.709 36.000 0.00 0.00 0.00 2.69
4991 5728 8.718102 TTTTTGAAAATTTCGGTGGTTATCAA 57.282 26.923 0.97 0.00 0.00 2.57
5028 5765 8.568617 AACCTCACTATATCTAGGGTTCAAAT 57.431 34.615 0.00 0.00 30.99 2.32
5052 5789 6.772716 AGATGCTCTAAGGTTCAAAGTTTGAA 59.227 34.615 23.91 23.91 46.68 2.69
5053 5790 6.299141 AGATGCTCTAAGGTTCAAAGTTTGA 58.701 36.000 14.35 14.35 38.04 2.69
5056 5793 5.221925 TGGAGATGCTCTAAGGTTCAAAGTT 60.222 40.000 0.00 0.00 0.00 2.66
5057 5794 4.287067 TGGAGATGCTCTAAGGTTCAAAGT 59.713 41.667 0.00 0.00 0.00 2.66
5058 5795 4.836825 TGGAGATGCTCTAAGGTTCAAAG 58.163 43.478 0.00 0.00 0.00 2.77
5059 5796 4.908601 TGGAGATGCTCTAAGGTTCAAA 57.091 40.909 0.00 0.00 0.00 2.69
5060 5797 4.565652 GGTTGGAGATGCTCTAAGGTTCAA 60.566 45.833 0.00 0.00 31.92 2.69
5063 5800 2.093447 CGGTTGGAGATGCTCTAAGGTT 60.093 50.000 0.00 0.00 31.92 3.50
5065 5802 1.482593 ACGGTTGGAGATGCTCTAAGG 59.517 52.381 0.00 0.00 31.92 2.69
5066 5803 2.932614 CAACGGTTGGAGATGCTCTAAG 59.067 50.000 13.03 0.00 31.92 2.18
5067 5804 2.972625 CAACGGTTGGAGATGCTCTAA 58.027 47.619 13.03 0.00 0.00 2.10
5068 5805 2.672961 CAACGGTTGGAGATGCTCTA 57.327 50.000 13.03 0.00 0.00 2.43
5069 5806 3.540211 CAACGGTTGGAGATGCTCT 57.460 52.632 13.03 0.00 0.00 4.09
5091 5828 0.463833 ATTTTTAGCGCCTCCTCGGG 60.464 55.000 2.29 0.00 0.00 5.14
5092 5829 0.938008 GATTTTTAGCGCCTCCTCGG 59.062 55.000 2.29 0.00 0.00 4.63
5095 5832 2.394604 GCGATTTTTAGCGCCTCCT 58.605 52.632 2.29 0.00 46.93 3.69
5096 5833 4.998294 GCGATTTTTAGCGCCTCC 57.002 55.556 2.29 0.00 46.93 4.30
5101 5838 1.724582 CCAGGGGGCGATTTTTAGCG 61.725 60.000 0.00 0.00 0.00 4.26
5102 5839 1.391933 CCCAGGGGGCGATTTTTAGC 61.392 60.000 0.00 0.00 35.35 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.