Multiple sequence alignment - TraesCS5D01G308100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G308100 chr5D 100.000 3698 0 0 1 3698 404876407 404872710 0.000000 6830.0
1 TraesCS5D01G308100 chr5B 93.300 3045 145 23 677 3698 486042361 486039353 0.000000 4438.0
2 TraesCS5D01G308100 chr5A 95.985 2192 73 4 704 2894 509216997 509219174 0.000000 3546.0
3 TraesCS5D01G308100 chr5A 89.754 771 62 14 2935 3698 509219550 509220310 0.000000 970.0
4 TraesCS5D01G308100 chr5A 92.947 638 44 1 3061 3698 554343724 554344360 0.000000 928.0
5 TraesCS5D01G308100 chr2A 93.260 638 42 1 3061 3698 572450803 572451439 0.000000 939.0
6 TraesCS5D01G308100 chr2A 96.774 31 1 0 551 581 703973962 703973992 0.007000 52.8
7 TraesCS5D01G308100 chr1D 100.000 31 0 0 551 581 295970529 295970559 0.000143 58.4
8 TraesCS5D01G308100 chr1D 92.105 38 1 2 544 581 276502886 276502921 0.007000 52.8
9 TraesCS5D01G308100 chr1D 96.774 31 1 0 551 581 337898614 337898644 0.007000 52.8
10 TraesCS5D01G308100 chr7D 94.444 36 2 0 546 581 495858783 495858748 0.000516 56.5
11 TraesCS5D01G308100 chr7D 100.000 28 0 0 554 581 207241000 207240973 0.007000 52.8
12 TraesCS5D01G308100 chr3A 100.000 29 0 0 554 582 25876829 25876801 0.002000 54.7
13 TraesCS5D01G308100 chr1B 100.000 28 0 0 554 581 375805887 375805914 0.007000 52.8
14 TraesCS5D01G308100 chr1A 100.000 28 0 0 554 581 348694184 348694211 0.007000 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G308100 chr5D 404872710 404876407 3697 True 6830 6830 100.0000 1 3698 1 chr5D.!!$R1 3697
1 TraesCS5D01G308100 chr5B 486039353 486042361 3008 True 4438 4438 93.3000 677 3698 1 chr5B.!!$R1 3021
2 TraesCS5D01G308100 chr5A 509216997 509220310 3313 False 2258 3546 92.8695 704 3698 2 chr5A.!!$F2 2994
3 TraesCS5D01G308100 chr5A 554343724 554344360 636 False 928 928 92.9470 3061 3698 1 chr5A.!!$F1 637
4 TraesCS5D01G308100 chr2A 572450803 572451439 636 False 939 939 93.2600 3061 3698 1 chr2A.!!$F1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.027586 CATAAGCCAAAGCGTACGCC 59.972 55.0 34.88 19.94 46.67 5.68 F
244 245 0.539986 TCAGGCGGTATCCACCTTTC 59.460 55.0 0.00 0.00 43.33 2.62 F
245 246 0.541863 CAGGCGGTATCCACCTTTCT 59.458 55.0 0.00 0.00 43.33 2.52 F
895 897 0.673644 AGACCTCGCCAAAACATCCG 60.674 55.0 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1286 0.325933 CCTGGTCCACTGCAAGATCA 59.674 55.000 0.00 0.00 37.43 2.92 R
1293 1295 1.051812 CAGTGAAGTCCTGGTCCACT 58.948 55.000 0.00 0.00 38.48 4.00 R
1865 1867 2.599597 CCCAGCCTTCCATGAGGG 59.400 66.667 0.00 0.00 37.29 4.30 R
2894 2896 0.514691 GCTGAGCTTGTTCGAACCAG 59.485 55.000 24.78 23.14 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.788055 GAAGGTTCTTCTAGCAAGTTAGC 57.212 43.478 0.83 0.00 0.00 3.09
23 24 4.209307 AGGTTCTTCTAGCAAGTTAGCC 57.791 45.455 0.00 0.00 34.23 3.93
24 25 2.930682 GGTTCTTCTAGCAAGTTAGCCG 59.069 50.000 0.00 0.00 34.23 5.52
25 26 2.295253 TCTTCTAGCAAGTTAGCCGC 57.705 50.000 0.00 0.00 34.23 6.53
26 27 1.134788 TCTTCTAGCAAGTTAGCCGCC 60.135 52.381 0.00 0.00 34.23 6.13
27 28 0.902531 TTCTAGCAAGTTAGCCGCCT 59.097 50.000 0.00 0.00 34.23 5.52
28 29 0.460311 TCTAGCAAGTTAGCCGCCTC 59.540 55.000 0.00 0.00 34.23 4.70
29 30 0.530870 CTAGCAAGTTAGCCGCCTCC 60.531 60.000 0.00 0.00 34.23 4.30
30 31 2.292794 TAGCAAGTTAGCCGCCTCCG 62.293 60.000 0.00 0.00 34.23 4.63
31 32 2.264794 CAAGTTAGCCGCCTCCGT 59.735 61.111 0.00 0.00 0.00 4.69
32 33 1.375523 CAAGTTAGCCGCCTCCGTT 60.376 57.895 0.00 0.00 0.00 4.44
33 34 1.079336 AAGTTAGCCGCCTCCGTTC 60.079 57.895 0.00 0.00 0.00 3.95
34 35 1.823169 AAGTTAGCCGCCTCCGTTCA 61.823 55.000 0.00 0.00 0.00 3.18
35 36 1.153429 GTTAGCCGCCTCCGTTCAT 60.153 57.895 0.00 0.00 0.00 2.57
36 37 0.103572 GTTAGCCGCCTCCGTTCATA 59.896 55.000 0.00 0.00 0.00 2.15
37 38 0.825410 TTAGCCGCCTCCGTTCATAA 59.175 50.000 0.00 0.00 0.00 1.90
38 39 1.045407 TAGCCGCCTCCGTTCATAAT 58.955 50.000 0.00 0.00 0.00 1.28
39 40 0.180406 AGCCGCCTCCGTTCATAATT 59.820 50.000 0.00 0.00 0.00 1.40
40 41 1.021968 GCCGCCTCCGTTCATAATTT 58.978 50.000 0.00 0.00 0.00 1.82
41 42 1.002792 GCCGCCTCCGTTCATAATTTC 60.003 52.381 0.00 0.00 0.00 2.17
42 43 1.602377 CCGCCTCCGTTCATAATTTCC 59.398 52.381 0.00 0.00 0.00 3.13
43 44 1.602377 CGCCTCCGTTCATAATTTCCC 59.398 52.381 0.00 0.00 0.00 3.97
44 45 2.745152 CGCCTCCGTTCATAATTTCCCT 60.745 50.000 0.00 0.00 0.00 4.20
45 46 2.618709 GCCTCCGTTCATAATTTCCCTG 59.381 50.000 0.00 0.00 0.00 4.45
46 47 2.618709 CCTCCGTTCATAATTTCCCTGC 59.381 50.000 0.00 0.00 0.00 4.85
47 48 2.618709 CTCCGTTCATAATTTCCCTGCC 59.381 50.000 0.00 0.00 0.00 4.85
48 49 2.241176 TCCGTTCATAATTTCCCTGCCT 59.759 45.455 0.00 0.00 0.00 4.75
49 50 2.618709 CCGTTCATAATTTCCCTGCCTC 59.381 50.000 0.00 0.00 0.00 4.70
50 51 2.287915 CGTTCATAATTTCCCTGCCTCG 59.712 50.000 0.00 0.00 0.00 4.63
51 52 1.967319 TCATAATTTCCCTGCCTCGC 58.033 50.000 0.00 0.00 0.00 5.03
52 53 0.954452 CATAATTTCCCTGCCTCGCC 59.046 55.000 0.00 0.00 0.00 5.54
53 54 0.535102 ATAATTTCCCTGCCTCGCCG 60.535 55.000 0.00 0.00 0.00 6.46
54 55 1.618876 TAATTTCCCTGCCTCGCCGA 61.619 55.000 0.00 0.00 0.00 5.54
55 56 2.876368 AATTTCCCTGCCTCGCCGAG 62.876 60.000 7.25 7.25 0.00 4.63
69 70 2.107141 CGAGCCATCGTTCCTCCC 59.893 66.667 0.00 0.00 44.09 4.30
70 71 2.107141 GAGCCATCGTTCCTCCCG 59.893 66.667 0.00 0.00 0.00 5.14
71 72 4.162690 AGCCATCGTTCCTCCCGC 62.163 66.667 0.00 0.00 0.00 6.13
73 74 3.781307 CCATCGTTCCTCCCGCCA 61.781 66.667 0.00 0.00 0.00 5.69
74 75 2.505982 CATCGTTCCTCCCGCCAT 59.494 61.111 0.00 0.00 0.00 4.40
75 76 1.889105 CATCGTTCCTCCCGCCATG 60.889 63.158 0.00 0.00 0.00 3.66
76 77 3.757248 ATCGTTCCTCCCGCCATGC 62.757 63.158 0.00 0.00 0.00 4.06
81 82 3.569210 CCTCCCGCCATGCCCATA 61.569 66.667 0.00 0.00 0.00 2.74
82 83 2.515398 CTCCCGCCATGCCCATAA 59.485 61.111 0.00 0.00 0.00 1.90
83 84 1.152777 CTCCCGCCATGCCCATAAA 60.153 57.895 0.00 0.00 0.00 1.40
84 85 0.754957 CTCCCGCCATGCCCATAAAA 60.755 55.000 0.00 0.00 0.00 1.52
85 86 0.105760 TCCCGCCATGCCCATAAAAT 60.106 50.000 0.00 0.00 0.00 1.82
86 87 1.145945 TCCCGCCATGCCCATAAAATA 59.854 47.619 0.00 0.00 0.00 1.40
87 88 2.178580 CCCGCCATGCCCATAAAATAT 58.821 47.619 0.00 0.00 0.00 1.28
88 89 2.566724 CCCGCCATGCCCATAAAATATT 59.433 45.455 0.00 0.00 0.00 1.28
89 90 3.587923 CCGCCATGCCCATAAAATATTG 58.412 45.455 0.00 0.00 0.00 1.90
90 91 3.006752 CCGCCATGCCCATAAAATATTGT 59.993 43.478 0.00 0.00 0.00 2.71
91 92 4.236935 CGCCATGCCCATAAAATATTGTC 58.763 43.478 0.00 0.00 0.00 3.18
92 93 4.261952 CGCCATGCCCATAAAATATTGTCA 60.262 41.667 0.00 0.00 0.00 3.58
93 94 5.567224 CGCCATGCCCATAAAATATTGTCAT 60.567 40.000 0.00 0.00 0.00 3.06
94 95 5.640357 GCCATGCCCATAAAATATTGTCATG 59.360 40.000 0.00 0.00 0.00 3.07
95 96 6.167685 CCATGCCCATAAAATATTGTCATGG 58.832 40.000 8.25 8.25 41.34 3.66
96 97 6.239657 CCATGCCCATAAAATATTGTCATGGT 60.240 38.462 12.28 0.00 41.88 3.55
97 98 6.805016 TGCCCATAAAATATTGTCATGGTT 57.195 33.333 16.32 0.00 35.40 3.67
98 99 7.192852 TGCCCATAAAATATTGTCATGGTTT 57.807 32.000 16.32 0.00 35.40 3.27
99 100 8.311395 TGCCCATAAAATATTGTCATGGTTTA 57.689 30.769 16.32 0.47 35.40 2.01
100 101 8.932610 TGCCCATAAAATATTGTCATGGTTTAT 58.067 29.630 16.32 2.35 35.40 1.40
101 102 9.423061 GCCCATAAAATATTGTCATGGTTTATC 57.577 33.333 16.32 3.71 35.40 1.75
102 103 9.624697 CCCATAAAATATTGTCATGGTTTATCG 57.375 33.333 16.32 3.36 35.40 2.92
151 152 9.920946 AGAATTAATGATTTTACCTAGAGCCAA 57.079 29.630 0.00 0.00 0.00 4.52
153 154 9.700831 AATTAATGATTTTACCTAGAGCCAAGT 57.299 29.630 0.00 0.00 0.00 3.16
154 155 9.700831 ATTAATGATTTTACCTAGAGCCAAGTT 57.299 29.630 0.00 0.00 0.00 2.66
155 156 7.631717 AATGATTTTACCTAGAGCCAAGTTC 57.368 36.000 0.00 0.00 0.00 3.01
156 157 6.374417 TGATTTTACCTAGAGCCAAGTTCT 57.626 37.500 0.00 0.00 0.00 3.01
157 158 6.779860 TGATTTTACCTAGAGCCAAGTTCTT 58.220 36.000 0.00 0.00 0.00 2.52
158 159 7.231467 TGATTTTACCTAGAGCCAAGTTCTTT 58.769 34.615 0.00 0.00 0.00 2.52
159 160 6.877611 TTTTACCTAGAGCCAAGTTCTTTG 57.122 37.500 0.00 0.00 36.50 2.77
160 161 2.784347 ACCTAGAGCCAAGTTCTTTGC 58.216 47.619 0.00 1.17 35.37 3.68
161 162 2.087646 CCTAGAGCCAAGTTCTTTGCC 58.912 52.381 5.25 0.00 35.37 4.52
162 163 2.290577 CCTAGAGCCAAGTTCTTTGCCT 60.291 50.000 5.25 5.41 35.37 4.75
163 164 3.055094 CCTAGAGCCAAGTTCTTTGCCTA 60.055 47.826 5.25 6.08 35.37 3.93
164 165 3.064900 AGAGCCAAGTTCTTTGCCTAG 57.935 47.619 5.25 0.00 35.37 3.02
165 166 2.639839 AGAGCCAAGTTCTTTGCCTAGA 59.360 45.455 5.25 0.00 35.37 2.43
166 167 3.006247 GAGCCAAGTTCTTTGCCTAGAG 58.994 50.000 5.25 0.00 35.37 2.43
167 168 1.470494 GCCAAGTTCTTTGCCTAGAGC 59.530 52.381 0.00 0.00 44.14 4.09
168 169 2.877708 GCCAAGTTCTTTGCCTAGAGCT 60.878 50.000 0.00 0.00 44.23 4.09
169 170 3.006247 CCAAGTTCTTTGCCTAGAGCTC 58.994 50.000 5.27 5.27 44.23 4.09
170 171 3.557898 CCAAGTTCTTTGCCTAGAGCTCA 60.558 47.826 17.77 0.82 44.23 4.26
171 172 4.260170 CAAGTTCTTTGCCTAGAGCTCAT 58.740 43.478 17.77 3.63 44.23 2.90
172 173 4.135747 AGTTCTTTGCCTAGAGCTCATC 57.864 45.455 17.77 2.06 44.23 2.92
173 174 3.118445 AGTTCTTTGCCTAGAGCTCATCC 60.118 47.826 17.77 1.57 44.23 3.51
174 175 2.756907 TCTTTGCCTAGAGCTCATCCT 58.243 47.619 17.77 0.00 44.23 3.24
175 176 2.433604 TCTTTGCCTAGAGCTCATCCTG 59.566 50.000 17.77 0.36 44.23 3.86
176 177 2.165357 TTGCCTAGAGCTCATCCTGA 57.835 50.000 17.77 0.00 44.23 3.86
177 178 2.165357 TGCCTAGAGCTCATCCTGAA 57.835 50.000 17.77 0.00 44.23 3.02
178 179 2.470990 TGCCTAGAGCTCATCCTGAAA 58.529 47.619 17.77 0.00 44.23 2.69
179 180 2.840038 TGCCTAGAGCTCATCCTGAAAA 59.160 45.455 17.77 0.00 44.23 2.29
180 181 3.264193 TGCCTAGAGCTCATCCTGAAAAA 59.736 43.478 17.77 0.00 44.23 1.94
200 201 3.515330 AAGATGCACATAAGCCAAAGC 57.485 42.857 0.00 0.00 40.32 3.51
201 202 1.402968 AGATGCACATAAGCCAAAGCG 59.597 47.619 0.00 0.00 46.67 4.68
202 203 1.133025 GATGCACATAAGCCAAAGCGT 59.867 47.619 0.00 0.00 46.67 5.07
203 204 1.814793 TGCACATAAGCCAAAGCGTA 58.185 45.000 0.00 0.00 46.67 4.42
204 205 1.466950 TGCACATAAGCCAAAGCGTAC 59.533 47.619 0.00 0.00 46.67 3.67
205 206 1.529010 GCACATAAGCCAAAGCGTACG 60.529 52.381 11.84 11.84 46.67 3.67
206 207 0.725117 ACATAAGCCAAAGCGTACGC 59.275 50.000 32.17 32.17 46.67 4.42
207 208 0.027586 CATAAGCCAAAGCGTACGCC 59.972 55.000 34.88 19.94 46.67 5.68
208 209 1.093496 ATAAGCCAAAGCGTACGCCC 61.093 55.000 34.88 18.37 46.67 6.13
209 210 2.451928 TAAGCCAAAGCGTACGCCCA 62.452 55.000 34.88 9.79 46.67 5.36
210 211 3.358707 GCCAAAGCGTACGCCCAA 61.359 61.111 34.88 0.00 43.17 4.12
211 212 2.867472 CCAAAGCGTACGCCCAAG 59.133 61.111 34.88 21.85 43.17 3.61
212 213 1.964373 CCAAAGCGTACGCCCAAGT 60.964 57.895 34.88 15.07 43.17 3.16
213 214 1.206578 CAAAGCGTACGCCCAAGTG 59.793 57.895 34.88 21.19 43.17 3.16
214 215 2.613506 AAAGCGTACGCCCAAGTGC 61.614 57.895 34.88 6.83 43.17 4.40
227 228 5.682943 GCCCAAGTGCGTATATAATTTCA 57.317 39.130 0.00 0.00 0.00 2.69
228 229 5.689819 GCCCAAGTGCGTATATAATTTCAG 58.310 41.667 0.00 0.00 0.00 3.02
229 230 5.334879 GCCCAAGTGCGTATATAATTTCAGG 60.335 44.000 0.00 0.00 0.00 3.86
230 231 5.334879 CCCAAGTGCGTATATAATTTCAGGC 60.335 44.000 0.00 0.00 0.00 4.85
231 232 5.374080 CAAGTGCGTATATAATTTCAGGCG 58.626 41.667 0.00 0.00 0.00 5.52
232 233 3.994392 AGTGCGTATATAATTTCAGGCGG 59.006 43.478 0.00 0.00 0.00 6.13
233 234 3.744426 GTGCGTATATAATTTCAGGCGGT 59.256 43.478 0.00 0.00 0.00 5.68
234 235 4.925054 GTGCGTATATAATTTCAGGCGGTA 59.075 41.667 0.00 0.00 0.00 4.02
235 236 5.579511 GTGCGTATATAATTTCAGGCGGTAT 59.420 40.000 0.00 0.00 0.00 2.73
236 237 5.808540 TGCGTATATAATTTCAGGCGGTATC 59.191 40.000 0.00 0.00 0.00 2.24
237 238 5.233689 GCGTATATAATTTCAGGCGGTATCC 59.766 44.000 0.00 0.00 0.00 2.59
238 239 6.334989 CGTATATAATTTCAGGCGGTATCCA 58.665 40.000 0.00 0.00 0.00 3.41
239 240 6.255020 CGTATATAATTTCAGGCGGTATCCAC 59.745 42.308 0.00 0.00 0.00 4.02
240 241 2.052782 AATTTCAGGCGGTATCCACC 57.947 50.000 0.00 0.00 41.93 4.61
241 242 1.213296 ATTTCAGGCGGTATCCACCT 58.787 50.000 0.00 0.00 43.33 4.00
242 243 0.988832 TTTCAGGCGGTATCCACCTT 59.011 50.000 0.00 0.00 43.33 3.50
243 244 0.988832 TTCAGGCGGTATCCACCTTT 59.011 50.000 0.00 0.00 43.33 3.11
244 245 0.539986 TCAGGCGGTATCCACCTTTC 59.460 55.000 0.00 0.00 43.33 2.62
245 246 0.541863 CAGGCGGTATCCACCTTTCT 59.458 55.000 0.00 0.00 43.33 2.52
246 247 1.760613 CAGGCGGTATCCACCTTTCTA 59.239 52.381 0.00 0.00 43.33 2.10
247 248 2.169769 CAGGCGGTATCCACCTTTCTAA 59.830 50.000 0.00 0.00 43.33 2.10
248 249 2.841881 AGGCGGTATCCACCTTTCTAAA 59.158 45.455 0.00 0.00 43.33 1.85
249 250 3.264964 AGGCGGTATCCACCTTTCTAAAA 59.735 43.478 0.00 0.00 43.33 1.52
250 251 4.011698 GGCGGTATCCACCTTTCTAAAAA 58.988 43.478 0.00 0.00 43.33 1.94
272 273 7.652300 AAAACAGTGAAGAGGAAAACAAAAC 57.348 32.000 0.00 0.00 0.00 2.43
273 274 5.975693 ACAGTGAAGAGGAAAACAAAACA 57.024 34.783 0.00 0.00 0.00 2.83
274 275 6.530019 ACAGTGAAGAGGAAAACAAAACAT 57.470 33.333 0.00 0.00 0.00 2.71
275 276 7.639113 ACAGTGAAGAGGAAAACAAAACATA 57.361 32.000 0.00 0.00 0.00 2.29
276 277 8.062065 ACAGTGAAGAGGAAAACAAAACATAA 57.938 30.769 0.00 0.00 0.00 1.90
277 278 8.527810 ACAGTGAAGAGGAAAACAAAACATAAA 58.472 29.630 0.00 0.00 0.00 1.40
278 279 8.807581 CAGTGAAGAGGAAAACAAAACATAAAC 58.192 33.333 0.00 0.00 0.00 2.01
279 280 8.527810 AGTGAAGAGGAAAACAAAACATAAACA 58.472 29.630 0.00 0.00 0.00 2.83
280 281 9.145865 GTGAAGAGGAAAACAAAACATAAACAA 57.854 29.630 0.00 0.00 0.00 2.83
281 282 9.712305 TGAAGAGGAAAACAAAACATAAACAAA 57.288 25.926 0.00 0.00 0.00 2.83
284 285 8.664798 AGAGGAAAACAAAACATAAACAAAAGC 58.335 29.630 0.00 0.00 0.00 3.51
285 286 8.329203 AGGAAAACAAAACATAAACAAAAGCA 57.671 26.923 0.00 0.00 0.00 3.91
286 287 8.955388 AGGAAAACAAAACATAAACAAAAGCAT 58.045 25.926 0.00 0.00 0.00 3.79
287 288 9.008289 GGAAAACAAAACATAAACAAAAGCATG 57.992 29.630 0.00 0.00 0.00 4.06
288 289 9.553418 GAAAACAAAACATAAACAAAAGCATGT 57.447 25.926 0.00 0.00 33.12 3.21
290 291 9.980780 AAACAAAACATAAACAAAAGCATGTAC 57.019 25.926 0.00 0.00 31.55 2.90
291 292 7.836512 ACAAAACATAAACAAAAGCATGTACG 58.163 30.769 0.00 0.00 31.55 3.67
292 293 7.043059 ACAAAACATAAACAAAAGCATGTACGG 60.043 33.333 0.00 0.00 31.55 4.02
293 294 5.699097 ACATAAACAAAAGCATGTACGGT 57.301 34.783 0.00 0.00 32.02 4.83
294 295 6.079424 ACATAAACAAAAGCATGTACGGTT 57.921 33.333 0.00 0.00 32.02 4.44
295 296 6.508777 ACATAAACAAAAGCATGTACGGTTT 58.491 32.000 0.00 2.66 38.18 3.27
296 297 6.981559 ACATAAACAAAAGCATGTACGGTTTT 59.018 30.769 5.25 5.25 38.94 2.43
297 298 5.959652 AAACAAAAGCATGTACGGTTTTC 57.040 34.783 7.45 0.00 38.94 2.29
298 299 3.972403 ACAAAAGCATGTACGGTTTTCC 58.028 40.909 7.45 0.00 38.94 3.13
299 300 3.381908 ACAAAAGCATGTACGGTTTTCCA 59.618 39.130 7.45 0.00 38.94 3.53
300 301 4.142138 ACAAAAGCATGTACGGTTTTCCAA 60.142 37.500 7.45 0.00 38.94 3.53
301 302 4.657436 AAAGCATGTACGGTTTTCCAAA 57.343 36.364 0.00 0.00 40.70 3.28
302 303 4.657436 AAGCATGTACGGTTTTCCAAAA 57.343 36.364 0.00 0.00 40.70 2.44
303 304 4.864704 AGCATGTACGGTTTTCCAAAAT 57.135 36.364 0.00 0.00 40.70 1.82
304 305 5.968528 AGCATGTACGGTTTTCCAAAATA 57.031 34.783 0.00 0.00 40.70 1.40
305 306 6.334102 AGCATGTACGGTTTTCCAAAATAA 57.666 33.333 0.00 0.00 40.70 1.40
306 307 6.153756 AGCATGTACGGTTTTCCAAAATAAC 58.846 36.000 0.00 0.00 40.70 1.89
307 308 5.921408 GCATGTACGGTTTTCCAAAATAACA 59.079 36.000 0.00 0.00 40.70 2.41
308 309 6.588373 GCATGTACGGTTTTCCAAAATAACAT 59.412 34.615 0.00 0.00 40.70 2.71
309 310 7.755822 GCATGTACGGTTTTCCAAAATAACATA 59.244 33.333 0.00 0.00 40.70 2.29
310 311 9.068008 CATGTACGGTTTTCCAAAATAACATAC 57.932 33.333 0.00 0.00 40.70 2.39
311 312 8.162878 TGTACGGTTTTCCAAAATAACATACA 57.837 30.769 0.00 0.00 40.70 2.29
312 313 8.627403 TGTACGGTTTTCCAAAATAACATACAA 58.373 29.630 0.00 0.00 40.70 2.41
313 314 7.933728 ACGGTTTTCCAAAATAACATACAAC 57.066 32.000 0.00 0.00 40.70 3.32
314 315 7.490000 ACGGTTTTCCAAAATAACATACAACA 58.510 30.769 0.00 0.00 40.70 3.33
315 316 7.650104 ACGGTTTTCCAAAATAACATACAACAG 59.350 33.333 0.00 0.00 40.70 3.16
316 317 7.650104 CGGTTTTCCAAAATAACATACAACAGT 59.350 33.333 0.00 0.00 40.70 3.55
317 318 8.974408 GGTTTTCCAAAATAACATACAACAGTC 58.026 33.333 0.00 0.00 40.31 3.51
318 319 9.744468 GTTTTCCAAAATAACATACAACAGTCT 57.256 29.630 0.00 0.00 0.00 3.24
329 330 8.654230 AACATACAACAGTCTAGAATAGCATG 57.346 34.615 0.00 0.00 38.99 4.06
330 331 7.786030 ACATACAACAGTCTAGAATAGCATGT 58.214 34.615 0.00 0.00 38.99 3.21
331 332 8.260818 ACATACAACAGTCTAGAATAGCATGTT 58.739 33.333 0.00 0.00 43.27 2.71
332 333 9.102757 CATACAACAGTCTAGAATAGCATGTTT 57.897 33.333 0.00 0.00 41.26 2.83
333 334 7.369803 ACAACAGTCTAGAATAGCATGTTTG 57.630 36.000 0.00 0.00 41.26 2.93
334 335 6.936900 ACAACAGTCTAGAATAGCATGTTTGT 59.063 34.615 0.00 0.00 41.26 2.83
335 336 8.094548 ACAACAGTCTAGAATAGCATGTTTGTA 58.905 33.333 0.00 0.00 41.26 2.41
336 337 9.102757 CAACAGTCTAGAATAGCATGTTTGTAT 57.897 33.333 0.00 0.00 41.26 2.29
350 351 9.926158 AGCATGTTTGTATATGAATGTCAAAAA 57.074 25.926 0.00 0.00 31.45 1.94
364 365 9.967451 TGAATGTCAAAAATAATACTACCTCCA 57.033 29.630 0.00 0.00 0.00 3.86
378 379 6.875972 ACTACCTCCATTTCACAATAGAGT 57.124 37.500 0.00 0.00 28.79 3.24
379 380 6.644347 ACTACCTCCATTTCACAATAGAGTG 58.356 40.000 0.00 0.00 40.85 3.51
380 381 4.265073 ACCTCCATTTCACAATAGAGTGC 58.735 43.478 0.00 0.00 39.35 4.40
381 382 3.310774 CCTCCATTTCACAATAGAGTGCG 59.689 47.826 0.00 0.00 39.35 5.34
382 383 3.935203 CTCCATTTCACAATAGAGTGCGT 59.065 43.478 0.00 0.00 39.35 5.24
383 384 5.079689 TCCATTTCACAATAGAGTGCGTA 57.920 39.130 0.00 0.00 39.35 4.42
384 385 5.670485 TCCATTTCACAATAGAGTGCGTAT 58.330 37.500 0.00 0.00 39.35 3.06
385 386 6.811954 TCCATTTCACAATAGAGTGCGTATA 58.188 36.000 0.00 0.00 39.35 1.47
386 387 7.441836 TCCATTTCACAATAGAGTGCGTATAT 58.558 34.615 0.00 0.00 39.35 0.86
387 388 8.581578 TCCATTTCACAATAGAGTGCGTATATA 58.418 33.333 0.00 0.00 39.35 0.86
388 389 8.864024 CCATTTCACAATAGAGTGCGTATATAG 58.136 37.037 0.00 0.00 39.35 1.31
389 390 9.411801 CATTTCACAATAGAGTGCGTATATAGT 57.588 33.333 0.00 0.00 39.35 2.12
390 391 9.982651 ATTTCACAATAGAGTGCGTATATAGTT 57.017 29.630 0.00 0.00 39.35 2.24
391 392 9.811995 TTTCACAATAGAGTGCGTATATAGTTT 57.188 29.630 0.00 0.00 39.35 2.66
392 393 9.811995 TTCACAATAGAGTGCGTATATAGTTTT 57.188 29.630 0.00 0.00 39.35 2.43
393 394 9.811995 TCACAATAGAGTGCGTATATAGTTTTT 57.188 29.630 0.00 0.00 39.35 1.94
399 400 8.997621 AGAGTGCGTATATAGTTTTTCTGAAA 57.002 30.769 0.00 0.00 0.00 2.69
400 401 9.088512 AGAGTGCGTATATAGTTTTTCTGAAAG 57.911 33.333 2.75 0.00 0.00 2.62
401 402 8.773404 AGTGCGTATATAGTTTTTCTGAAAGT 57.227 30.769 2.75 0.00 33.76 2.66
402 403 8.870879 AGTGCGTATATAGTTTTTCTGAAAGTC 58.129 33.333 2.75 1.47 33.76 3.01
403 404 8.653338 GTGCGTATATAGTTTTTCTGAAAGTCA 58.347 33.333 2.75 0.00 33.76 3.41
404 405 9.210329 TGCGTATATAGTTTTTCTGAAAGTCAA 57.790 29.630 2.75 0.00 33.76 3.18
523 524 7.935338 TGTACTTCTTCGGTTTTAGTAAGTG 57.065 36.000 0.00 0.00 0.00 3.16
524 525 7.491682 TGTACTTCTTCGGTTTTAGTAAGTGT 58.508 34.615 0.00 0.00 0.00 3.55
525 526 7.649306 TGTACTTCTTCGGTTTTAGTAAGTGTC 59.351 37.037 0.00 0.00 0.00 3.67
526 527 6.576185 ACTTCTTCGGTTTTAGTAAGTGTCA 58.424 36.000 0.00 0.00 0.00 3.58
527 528 7.215085 ACTTCTTCGGTTTTAGTAAGTGTCAT 58.785 34.615 0.00 0.00 0.00 3.06
528 529 7.170998 ACTTCTTCGGTTTTAGTAAGTGTCATG 59.829 37.037 0.00 0.00 0.00 3.07
529 530 6.751157 TCTTCGGTTTTAGTAAGTGTCATGA 58.249 36.000 0.00 0.00 0.00 3.07
530 531 7.383687 TCTTCGGTTTTAGTAAGTGTCATGAT 58.616 34.615 0.00 0.00 0.00 2.45
531 532 7.876068 TCTTCGGTTTTAGTAAGTGTCATGATT 59.124 33.333 0.00 0.00 0.00 2.57
532 533 7.972832 TCGGTTTTAGTAAGTGTCATGATTT 57.027 32.000 0.00 0.00 0.00 2.17
533 534 8.385898 TCGGTTTTAGTAAGTGTCATGATTTT 57.614 30.769 0.00 0.00 0.00 1.82
534 535 8.842280 TCGGTTTTAGTAAGTGTCATGATTTTT 58.158 29.630 0.00 0.00 0.00 1.94
535 536 8.901748 CGGTTTTAGTAAGTGTCATGATTTTTG 58.098 33.333 0.00 0.00 0.00 2.44
536 537 9.744468 GGTTTTAGTAAGTGTCATGATTTTTGT 57.256 29.630 0.00 0.00 0.00 2.83
545 546 8.807667 AGTGTCATGATTTTTGTTCAAATCTC 57.192 30.769 0.00 1.13 41.80 2.75
546 547 8.636213 AGTGTCATGATTTTTGTTCAAATCTCT 58.364 29.630 0.00 0.00 41.80 3.10
547 548 8.909671 GTGTCATGATTTTTGTTCAAATCTCTC 58.090 33.333 0.00 0.00 41.80 3.20
548 549 8.084073 TGTCATGATTTTTGTTCAAATCTCTCC 58.916 33.333 0.00 0.00 41.80 3.71
549 550 8.084073 GTCATGATTTTTGTTCAAATCTCTCCA 58.916 33.333 0.00 0.00 41.80 3.86
550 551 8.809066 TCATGATTTTTGTTCAAATCTCTCCAT 58.191 29.630 0.00 0.00 41.80 3.41
551 552 9.431887 CATGATTTTTGTTCAAATCTCTCCATT 57.568 29.630 7.48 0.00 41.80 3.16
553 554 9.480053 TGATTTTTGTTCAAATCTCTCCATTTC 57.520 29.630 7.48 0.00 41.80 2.17
554 555 9.480053 GATTTTTGTTCAAATCTCTCCATTTCA 57.520 29.630 0.00 0.00 39.26 2.69
555 556 9.835389 ATTTTTGTTCAAATCTCTCCATTTCAA 57.165 25.926 0.00 0.00 0.00 2.69
556 557 9.664332 TTTTTGTTCAAATCTCTCCATTTCAAA 57.336 25.926 0.00 0.00 0.00 2.69
557 558 9.664332 TTTTGTTCAAATCTCTCCATTTCAAAA 57.336 25.926 0.00 0.00 31.33 2.44
558 559 9.835389 TTTGTTCAAATCTCTCCATTTCAAAAT 57.165 25.926 0.00 0.00 0.00 1.82
564 565 8.866956 CAAATCTCTCCATTTCAAAATAAGTGC 58.133 33.333 0.00 0.00 0.00 4.40
565 566 6.515272 TCTCTCCATTTCAAAATAAGTGCC 57.485 37.500 0.00 0.00 0.00 5.01
566 567 5.123820 TCTCTCCATTTCAAAATAAGTGCCG 59.876 40.000 0.00 0.00 0.00 5.69
567 568 4.764823 TCTCCATTTCAAAATAAGTGCCGT 59.235 37.500 0.00 0.00 0.00 5.68
568 569 4.804108 TCCATTTCAAAATAAGTGCCGTG 58.196 39.130 0.00 0.00 0.00 4.94
569 570 3.925913 CCATTTCAAAATAAGTGCCGTGG 59.074 43.478 0.00 0.00 0.00 4.94
570 571 4.555262 CATTTCAAAATAAGTGCCGTGGT 58.445 39.130 0.00 0.00 0.00 4.16
571 572 4.657436 TTTCAAAATAAGTGCCGTGGTT 57.343 36.364 0.00 0.00 0.00 3.67
572 573 4.657436 TTCAAAATAAGTGCCGTGGTTT 57.343 36.364 0.00 0.00 0.00 3.27
573 574 4.657436 TCAAAATAAGTGCCGTGGTTTT 57.343 36.364 0.00 0.00 0.00 2.43
574 575 5.769484 TCAAAATAAGTGCCGTGGTTTTA 57.231 34.783 0.00 0.00 0.00 1.52
575 576 5.764131 TCAAAATAAGTGCCGTGGTTTTAG 58.236 37.500 0.00 0.00 0.00 1.85
576 577 5.299782 TCAAAATAAGTGCCGTGGTTTTAGT 59.700 36.000 0.00 0.00 0.00 2.24
577 578 5.777850 AAATAAGTGCCGTGGTTTTAGTT 57.222 34.783 0.00 0.00 0.00 2.24
578 579 5.366829 AATAAGTGCCGTGGTTTTAGTTC 57.633 39.130 0.00 0.00 0.00 3.01
579 580 2.335316 AGTGCCGTGGTTTTAGTTCA 57.665 45.000 0.00 0.00 0.00 3.18
580 581 2.645802 AGTGCCGTGGTTTTAGTTCAA 58.354 42.857 0.00 0.00 0.00 2.69
581 582 2.356695 AGTGCCGTGGTTTTAGTTCAAC 59.643 45.455 0.00 0.00 0.00 3.18
582 583 1.331138 TGCCGTGGTTTTAGTTCAACG 59.669 47.619 0.00 0.00 0.00 4.10
583 584 1.334329 GCCGTGGTTTTAGTTCAACGG 60.334 52.381 7.64 7.64 41.78 4.44
584 585 2.211806 CCGTGGTTTTAGTTCAACGGA 58.788 47.619 6.18 0.00 41.44 4.69
585 586 2.222445 CCGTGGTTTTAGTTCAACGGAG 59.778 50.000 6.18 0.00 41.44 4.63
586 587 2.222445 CGTGGTTTTAGTTCAACGGAGG 59.778 50.000 0.00 0.00 0.00 4.30
587 588 2.551032 GTGGTTTTAGTTCAACGGAGGG 59.449 50.000 0.00 0.00 0.00 4.30
588 589 2.438763 TGGTTTTAGTTCAACGGAGGGA 59.561 45.455 0.00 0.00 0.00 4.20
589 590 3.072211 GGTTTTAGTTCAACGGAGGGAG 58.928 50.000 0.00 0.00 0.00 4.30
590 591 3.495629 GGTTTTAGTTCAACGGAGGGAGT 60.496 47.826 0.00 0.00 0.00 3.85
591 592 4.262592 GGTTTTAGTTCAACGGAGGGAGTA 60.263 45.833 0.00 0.00 0.00 2.59
592 593 5.485620 GTTTTAGTTCAACGGAGGGAGTAT 58.514 41.667 0.00 0.00 0.00 2.12
593 594 6.351286 GGTTTTAGTTCAACGGAGGGAGTATA 60.351 42.308 0.00 0.00 0.00 1.47
594 595 7.270779 GTTTTAGTTCAACGGAGGGAGTATAT 58.729 38.462 0.00 0.00 0.00 0.86
595 596 8.416329 GTTTTAGTTCAACGGAGGGAGTATATA 58.584 37.037 0.00 0.00 0.00 0.86
596 597 8.716674 TTTAGTTCAACGGAGGGAGTATATAT 57.283 34.615 0.00 0.00 0.00 0.86
597 598 6.591750 AGTTCAACGGAGGGAGTATATATG 57.408 41.667 0.00 0.00 0.00 1.78
598 599 6.075984 AGTTCAACGGAGGGAGTATATATGT 58.924 40.000 0.00 0.00 0.00 2.29
599 600 6.553852 AGTTCAACGGAGGGAGTATATATGTT 59.446 38.462 0.00 0.00 0.00 2.71
600 601 6.989155 TCAACGGAGGGAGTATATATGTTT 57.011 37.500 0.00 0.00 0.00 2.83
601 602 8.362639 GTTCAACGGAGGGAGTATATATGTTTA 58.637 37.037 0.00 0.00 0.00 2.01
602 603 8.118976 TCAACGGAGGGAGTATATATGTTTAG 57.881 38.462 0.00 0.00 0.00 1.85
603 604 7.727186 TCAACGGAGGGAGTATATATGTTTAGT 59.273 37.037 0.00 0.00 0.00 2.24
604 605 9.017509 CAACGGAGGGAGTATATATGTTTAGTA 57.982 37.037 0.00 0.00 0.00 1.82
605 606 9.592196 AACGGAGGGAGTATATATGTTTAGTAA 57.408 33.333 0.00 0.00 0.00 2.24
606 607 9.765295 ACGGAGGGAGTATATATGTTTAGTAAT 57.235 33.333 0.00 0.00 0.00 1.89
620 621 6.742109 TGTTTAGTAATGTAGAGATACCCGC 58.258 40.000 0.00 0.00 0.00 6.13
621 622 6.321945 TGTTTAGTAATGTAGAGATACCCGCA 59.678 38.462 0.00 0.00 0.00 5.69
622 623 7.014905 TGTTTAGTAATGTAGAGATACCCGCAT 59.985 37.037 0.00 0.00 0.00 4.73
623 624 7.534723 TTAGTAATGTAGAGATACCCGCATT 57.465 36.000 0.00 0.00 0.00 3.56
624 625 6.420913 AGTAATGTAGAGATACCCGCATTT 57.579 37.500 0.00 0.00 0.00 2.32
625 626 6.827727 AGTAATGTAGAGATACCCGCATTTT 58.172 36.000 0.00 0.00 0.00 1.82
626 627 7.280356 AGTAATGTAGAGATACCCGCATTTTT 58.720 34.615 0.00 0.00 0.00 1.94
711 712 9.826574 ATTTTAAGAAAATCTGTATGCATGCAT 57.173 25.926 33.92 33.92 36.38 3.96
895 897 0.673644 AGACCTCGCCAAAACATCCG 60.674 55.000 0.00 0.00 0.00 4.18
950 952 1.068250 CCCTCTCCTCCGAAATCGC 59.932 63.158 0.00 0.00 38.18 4.58
1260 1262 1.810030 GGGCAACGATGTCTCCGAC 60.810 63.158 0.00 0.00 37.60 4.79
1293 1295 2.829914 GGCGCCCATGATCTTGCA 60.830 61.111 18.11 0.00 0.00 4.08
1343 1345 3.519930 GGGCCTCGACGTCTCCTC 61.520 72.222 14.70 0.19 0.00 3.71
1695 1697 1.539157 CAAGGAAGGTCAAGGAAGCC 58.461 55.000 0.00 0.00 0.00 4.35
1865 1867 1.659098 CGATTTGAAGACCTACACCGC 59.341 52.381 0.00 0.00 0.00 5.68
1923 1925 2.736144 TGCTTAAGTCGGTGTACCAG 57.264 50.000 4.02 0.00 35.14 4.00
2151 2153 1.003696 GAGCTTTCTAAGGCCAGTGGT 59.996 52.381 11.74 0.00 0.00 4.16
2541 2543 3.336122 CAGGCTGGAAGAAGCTTGT 57.664 52.632 2.10 0.00 43.30 3.16
2544 2546 0.595095 GGCTGGAAGAAGCTTGTGTG 59.405 55.000 2.10 0.00 43.06 3.82
2632 2634 3.966665 AGCTCTTATTGAGGGAGGAAGAG 59.033 47.826 5.74 5.74 43.88 2.85
2685 2687 2.686405 GGATGGATTACGGAAAACACCC 59.314 50.000 0.00 0.00 0.00 4.61
2717 2719 6.017687 CGTTGAGGAATCATGCAAATGATCTA 60.018 38.462 3.33 0.00 40.14 1.98
2750 2752 6.748132 GCATATGGCTTTTGGCTATTAGAAA 58.252 36.000 4.56 0.00 46.20 2.52
2753 2755 6.603940 ATGGCTTTTGGCTATTAGAAAACA 57.396 33.333 0.00 0.00 46.20 2.83
2763 2765 6.257849 TGGCTATTAGAAAACAATGTAGCTCG 59.742 38.462 0.00 0.00 34.89 5.03
2775 2777 5.703592 ACAATGTAGCTCGGTCAAAATTGTA 59.296 36.000 0.00 0.00 35.76 2.41
2782 2784 5.408604 AGCTCGGTCAAAATTGTAGTAACAG 59.591 40.000 0.00 0.00 36.83 3.16
2785 2787 5.929992 TCGGTCAAAATTGTAGTAACAGAGG 59.070 40.000 0.00 0.00 36.83 3.69
2876 2878 8.786898 GCCAATTTAGATTCAGTAGCATCAATA 58.213 33.333 0.00 0.00 0.00 1.90
2889 2891 8.190122 CAGTAGCATCAATATAGGATGAGAGAC 58.810 40.741 17.18 10.17 43.80 3.36
2894 2896 7.978975 GCATCAATATAGGATGAGAGACTTACC 59.021 40.741 17.18 0.00 43.80 2.85
2900 2902 4.027437 AGGATGAGAGACTTACCTGGTTC 58.973 47.826 3.84 0.00 0.00 3.62
2932 3277 4.467438 TCAGCTAAGATGGTGTGATGAGAA 59.533 41.667 0.00 0.00 36.85 2.87
2933 3278 5.129980 TCAGCTAAGATGGTGTGATGAGAAT 59.870 40.000 0.00 0.00 36.85 2.40
2934 3279 6.324770 TCAGCTAAGATGGTGTGATGAGAATA 59.675 38.462 0.00 0.00 36.85 1.75
2935 3280 7.015974 TCAGCTAAGATGGTGTGATGAGAATAT 59.984 37.037 0.00 0.00 36.85 1.28
2936 3281 7.117956 CAGCTAAGATGGTGTGATGAGAATATG 59.882 40.741 0.00 0.00 0.00 1.78
2937 3282 7.015974 AGCTAAGATGGTGTGATGAGAATATGA 59.984 37.037 0.00 0.00 0.00 2.15
2938 3283 7.331440 GCTAAGATGGTGTGATGAGAATATGAG 59.669 40.741 0.00 0.00 0.00 2.90
2939 3284 6.990908 AGATGGTGTGATGAGAATATGAGA 57.009 37.500 0.00 0.00 0.00 3.27
2945 3290 6.587990 GGTGTGATGAGAATATGAGATAACCG 59.412 42.308 0.00 0.00 0.00 4.44
2949 3294 9.429359 GTGATGAGAATATGAGATAACCGAATT 57.571 33.333 0.00 0.00 0.00 2.17
2966 3311 5.348451 ACCGAATTCTTTACAAAATGCATGC 59.652 36.000 11.82 11.82 0.00 4.06
2968 3313 6.454583 CCGAATTCTTTACAAAATGCATGCTG 60.455 38.462 20.33 11.24 0.00 4.41
2996 3341 8.532977 AAATTGTGCAACGCTTATTATTCTTT 57.467 26.923 0.00 0.00 42.39 2.52
3035 3380 4.654262 ACCATAGATAGACGAACCATGGTT 59.346 41.667 30.23 30.23 41.35 3.67
3059 3404 3.307691 GGACCAGATCAATGACAGGTTGA 60.308 47.826 4.88 0.00 39.65 3.18
3145 3493 2.818432 AGCAGGAGCACATTCTTCAAAG 59.182 45.455 0.00 0.00 45.49 2.77
3209 3557 6.435430 TTTGTTCATCAAGAATATGGTCCG 57.565 37.500 0.00 0.00 38.76 4.79
3297 3646 8.903570 TTATTTGGTCGTAATTTAATGTGCAG 57.096 30.769 0.00 0.00 0.00 4.41
3300 3649 5.189928 TGGTCGTAATTTAATGTGCAGGAT 58.810 37.500 0.00 0.00 0.00 3.24
3534 3884 2.038837 GGTGGCGGCAGTACCTTTC 61.039 63.158 13.91 0.00 35.61 2.62
3554 3904 7.998964 ACCTTTCGGTTTTCATGGAATAGATAT 59.001 33.333 0.00 0.00 42.13 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.632251 GGCTAACTTGCTAGAAGAACCTTC 59.368 45.833 1.04 0.00 0.00 3.46
1 2 4.580868 GGCTAACTTGCTAGAAGAACCTT 58.419 43.478 1.04 0.00 0.00 3.50
2 3 3.368531 CGGCTAACTTGCTAGAAGAACCT 60.369 47.826 1.04 0.00 0.00 3.50
3 4 2.930682 CGGCTAACTTGCTAGAAGAACC 59.069 50.000 1.04 0.00 0.00 3.62
4 5 2.348971 GCGGCTAACTTGCTAGAAGAAC 59.651 50.000 1.04 0.00 0.00 3.01
5 6 2.618053 GCGGCTAACTTGCTAGAAGAA 58.382 47.619 1.04 0.00 0.00 2.52
6 7 1.134788 GGCGGCTAACTTGCTAGAAGA 60.135 52.381 0.00 0.00 0.00 2.87
7 8 1.134670 AGGCGGCTAACTTGCTAGAAG 60.135 52.381 11.03 0.25 0.00 2.85
8 9 0.902531 AGGCGGCTAACTTGCTAGAA 59.097 50.000 11.03 0.00 0.00 2.10
9 10 0.460311 GAGGCGGCTAACTTGCTAGA 59.540 55.000 13.24 0.00 0.00 2.43
10 11 0.530870 GGAGGCGGCTAACTTGCTAG 60.531 60.000 13.24 0.00 0.00 3.42
11 12 1.520666 GGAGGCGGCTAACTTGCTA 59.479 57.895 13.24 0.00 0.00 3.49
12 13 2.269241 GGAGGCGGCTAACTTGCT 59.731 61.111 13.24 0.00 0.00 3.91
13 14 3.195698 CGGAGGCGGCTAACTTGC 61.196 66.667 13.24 0.00 0.00 4.01
14 15 1.359459 GAACGGAGGCGGCTAACTTG 61.359 60.000 13.24 2.47 0.00 3.16
15 16 1.079336 GAACGGAGGCGGCTAACTT 60.079 57.895 13.24 2.43 0.00 2.66
16 17 1.614241 ATGAACGGAGGCGGCTAACT 61.614 55.000 13.24 0.00 0.00 2.24
17 18 0.103572 TATGAACGGAGGCGGCTAAC 59.896 55.000 13.24 7.35 0.00 2.34
18 19 0.825410 TTATGAACGGAGGCGGCTAA 59.175 50.000 13.24 0.00 0.00 3.09
19 20 1.045407 ATTATGAACGGAGGCGGCTA 58.955 50.000 13.24 0.00 0.00 3.93
20 21 0.180406 AATTATGAACGGAGGCGGCT 59.820 50.000 13.09 13.09 0.00 5.52
21 22 1.002792 GAAATTATGAACGGAGGCGGC 60.003 52.381 0.00 0.00 0.00 6.53
22 23 1.602377 GGAAATTATGAACGGAGGCGG 59.398 52.381 0.00 0.00 0.00 6.13
23 24 1.602377 GGGAAATTATGAACGGAGGCG 59.398 52.381 0.00 0.00 0.00 5.52
24 25 2.618709 CAGGGAAATTATGAACGGAGGC 59.381 50.000 0.00 0.00 0.00 4.70
25 26 2.618709 GCAGGGAAATTATGAACGGAGG 59.381 50.000 0.00 0.00 0.00 4.30
26 27 2.618709 GGCAGGGAAATTATGAACGGAG 59.381 50.000 0.00 0.00 0.00 4.63
27 28 2.241176 AGGCAGGGAAATTATGAACGGA 59.759 45.455 0.00 0.00 0.00 4.69
28 29 2.618709 GAGGCAGGGAAATTATGAACGG 59.381 50.000 0.00 0.00 0.00 4.44
29 30 2.287915 CGAGGCAGGGAAATTATGAACG 59.712 50.000 0.00 0.00 0.00 3.95
30 31 2.033424 GCGAGGCAGGGAAATTATGAAC 59.967 50.000 0.00 0.00 0.00 3.18
31 32 2.297701 GCGAGGCAGGGAAATTATGAA 58.702 47.619 0.00 0.00 0.00 2.57
32 33 1.476833 GGCGAGGCAGGGAAATTATGA 60.477 52.381 0.00 0.00 0.00 2.15
33 34 0.954452 GGCGAGGCAGGGAAATTATG 59.046 55.000 0.00 0.00 0.00 1.90
34 35 0.535102 CGGCGAGGCAGGGAAATTAT 60.535 55.000 0.00 0.00 0.00 1.28
35 36 1.153249 CGGCGAGGCAGGGAAATTA 60.153 57.895 0.00 0.00 0.00 1.40
36 37 2.438434 CGGCGAGGCAGGGAAATT 60.438 61.111 0.00 0.00 0.00 1.82
37 38 3.391665 CTCGGCGAGGCAGGGAAAT 62.392 63.158 28.52 0.00 0.00 2.17
38 39 4.082523 CTCGGCGAGGCAGGGAAA 62.083 66.667 28.52 0.00 0.00 3.13
53 54 2.107141 CGGGAGGAACGATGGCTC 59.893 66.667 0.00 0.00 0.00 4.70
54 55 4.162690 GCGGGAGGAACGATGGCT 62.163 66.667 0.00 0.00 0.00 4.75
56 57 3.106986 ATGGCGGGAGGAACGATGG 62.107 63.158 0.00 0.00 0.00 3.51
57 58 1.889105 CATGGCGGGAGGAACGATG 60.889 63.158 0.00 0.00 0.00 3.84
58 59 2.505982 CATGGCGGGAGGAACGAT 59.494 61.111 0.00 0.00 0.00 3.73
59 60 4.467084 GCATGGCGGGAGGAACGA 62.467 66.667 0.00 0.00 0.00 3.85
64 65 2.638981 TTTATGGGCATGGCGGGAGG 62.639 60.000 13.76 0.00 0.00 4.30
65 66 0.754957 TTTTATGGGCATGGCGGGAG 60.755 55.000 13.76 0.00 0.00 4.30
66 67 0.105760 ATTTTATGGGCATGGCGGGA 60.106 50.000 13.76 0.00 0.00 5.14
67 68 1.626686 TATTTTATGGGCATGGCGGG 58.373 50.000 13.76 0.00 0.00 6.13
68 69 3.006752 ACAATATTTTATGGGCATGGCGG 59.993 43.478 13.76 0.00 0.00 6.13
69 70 4.236935 GACAATATTTTATGGGCATGGCG 58.763 43.478 13.76 0.00 0.00 5.69
70 71 5.212532 TGACAATATTTTATGGGCATGGC 57.787 39.130 11.56 11.56 0.00 4.40
71 72 6.167685 CCATGACAATATTTTATGGGCATGG 58.832 40.000 18.22 18.22 42.11 3.66
72 73 6.761312 ACCATGACAATATTTTATGGGCATG 58.239 36.000 19.12 15.16 41.96 4.06
73 74 6.999705 ACCATGACAATATTTTATGGGCAT 57.000 33.333 19.12 6.36 41.96 4.40
74 75 6.805016 AACCATGACAATATTTTATGGGCA 57.195 33.333 19.12 4.57 41.96 5.36
75 76 9.423061 GATAAACCATGACAATATTTTATGGGC 57.577 33.333 19.12 0.00 41.96 5.36
76 77 9.624697 CGATAAACCATGACAATATTTTATGGG 57.375 33.333 19.12 8.29 41.96 4.00
84 85 9.734620 CATGTTTTCGATAAACCATGACAATAT 57.265 29.630 15.71 0.00 44.13 1.28
85 86 8.735315 ACATGTTTTCGATAAACCATGACAATA 58.265 29.630 19.08 3.13 44.13 1.90
86 87 7.601856 ACATGTTTTCGATAAACCATGACAAT 58.398 30.769 19.08 5.68 44.13 2.71
87 88 6.976088 ACATGTTTTCGATAAACCATGACAA 58.024 32.000 19.08 4.14 44.13 3.18
88 89 6.567687 ACATGTTTTCGATAAACCATGACA 57.432 33.333 19.08 2.60 44.13 3.58
89 90 7.523219 TGTACATGTTTTCGATAAACCATGAC 58.477 34.615 19.08 14.38 44.13 3.06
90 91 7.674471 TGTACATGTTTTCGATAAACCATGA 57.326 32.000 19.08 6.68 44.13 3.07
91 92 8.326599 CATGTACATGTTTTCGATAAACCATG 57.673 34.615 24.91 13.79 45.79 3.66
125 126 9.920946 TTGGCTCTAGGTAAAATCATTAATTCT 57.079 29.630 0.00 0.00 0.00 2.40
127 128 9.700831 ACTTGGCTCTAGGTAAAATCATTAATT 57.299 29.630 0.00 0.00 0.00 1.40
128 129 9.700831 AACTTGGCTCTAGGTAAAATCATTAAT 57.299 29.630 0.00 0.00 0.00 1.40
129 130 9.174166 GAACTTGGCTCTAGGTAAAATCATTAA 57.826 33.333 0.00 0.00 0.00 1.40
130 131 8.548877 AGAACTTGGCTCTAGGTAAAATCATTA 58.451 33.333 0.00 0.00 0.00 1.90
131 132 7.406104 AGAACTTGGCTCTAGGTAAAATCATT 58.594 34.615 0.00 0.00 0.00 2.57
132 133 6.963322 AGAACTTGGCTCTAGGTAAAATCAT 58.037 36.000 0.00 0.00 0.00 2.45
133 134 6.374417 AGAACTTGGCTCTAGGTAAAATCA 57.626 37.500 0.00 0.00 0.00 2.57
134 135 7.530863 CAAAGAACTTGGCTCTAGGTAAAATC 58.469 38.462 0.00 0.00 0.00 2.17
135 136 6.071896 GCAAAGAACTTGGCTCTAGGTAAAAT 60.072 38.462 6.67 0.00 36.60 1.82
136 137 5.240844 GCAAAGAACTTGGCTCTAGGTAAAA 59.759 40.000 6.67 0.00 36.60 1.52
137 138 4.760204 GCAAAGAACTTGGCTCTAGGTAAA 59.240 41.667 6.67 0.00 36.60 2.01
138 139 4.324267 GCAAAGAACTTGGCTCTAGGTAA 58.676 43.478 6.67 0.00 36.60 2.85
139 140 3.939066 GCAAAGAACTTGGCTCTAGGTA 58.061 45.455 6.67 0.00 36.60 3.08
140 141 2.784347 GCAAAGAACTTGGCTCTAGGT 58.216 47.619 6.67 0.00 36.60 3.08
148 149 3.006247 GAGCTCTAGGCAAAGAACTTGG 58.994 50.000 6.43 0.00 44.79 3.61
149 150 3.668447 TGAGCTCTAGGCAAAGAACTTG 58.332 45.455 16.19 0.00 44.79 3.16
150 151 4.512484 GATGAGCTCTAGGCAAAGAACTT 58.488 43.478 16.19 0.00 44.79 2.66
151 152 3.118445 GGATGAGCTCTAGGCAAAGAACT 60.118 47.826 16.19 0.00 44.79 3.01
152 153 3.118445 AGGATGAGCTCTAGGCAAAGAAC 60.118 47.826 16.19 0.00 44.79 3.01
153 154 3.110705 AGGATGAGCTCTAGGCAAAGAA 58.889 45.455 16.19 0.00 44.79 2.52
154 155 2.433604 CAGGATGAGCTCTAGGCAAAGA 59.566 50.000 16.19 0.00 44.79 2.52
155 156 2.433604 TCAGGATGAGCTCTAGGCAAAG 59.566 50.000 16.19 0.00 42.56 2.77
156 157 2.470990 TCAGGATGAGCTCTAGGCAAA 58.529 47.619 16.19 0.00 42.56 3.68
157 158 2.165357 TCAGGATGAGCTCTAGGCAA 57.835 50.000 16.19 0.00 42.56 4.52
158 159 3.933206 TCAGGATGAGCTCTAGGCA 57.067 52.632 16.19 0.00 42.56 4.75
177 178 4.692155 GCTTTGGCTTATGTGCATCTTTTT 59.308 37.500 0.00 0.00 35.22 1.94
178 179 4.248058 GCTTTGGCTTATGTGCATCTTTT 58.752 39.130 0.00 0.00 35.22 2.27
179 180 3.674138 CGCTTTGGCTTATGTGCATCTTT 60.674 43.478 0.00 0.00 36.09 2.52
180 181 2.159338 CGCTTTGGCTTATGTGCATCTT 60.159 45.455 0.00 0.00 36.09 2.40
181 182 1.402968 CGCTTTGGCTTATGTGCATCT 59.597 47.619 0.00 0.00 36.09 2.90
182 183 1.133025 ACGCTTTGGCTTATGTGCATC 59.867 47.619 0.00 0.00 36.09 3.91
183 184 1.176527 ACGCTTTGGCTTATGTGCAT 58.823 45.000 0.00 0.00 36.09 3.96
184 185 1.466950 GTACGCTTTGGCTTATGTGCA 59.533 47.619 0.00 0.00 36.09 4.57
185 186 1.529010 CGTACGCTTTGGCTTATGTGC 60.529 52.381 0.52 0.00 36.09 4.57
186 187 1.529010 GCGTACGCTTTGGCTTATGTG 60.529 52.381 31.95 0.00 38.26 3.21
187 188 0.725117 GCGTACGCTTTGGCTTATGT 59.275 50.000 31.95 0.00 38.26 2.29
188 189 0.027586 GGCGTACGCTTTGGCTTATG 59.972 55.000 36.24 0.00 41.60 1.90
189 190 1.093496 GGGCGTACGCTTTGGCTTAT 61.093 55.000 36.24 0.00 41.60 1.73
190 191 1.742510 GGGCGTACGCTTTGGCTTA 60.743 57.895 36.24 0.00 41.60 3.09
191 192 3.053896 GGGCGTACGCTTTGGCTT 61.054 61.111 36.24 0.00 41.60 4.35
192 193 3.835790 TTGGGCGTACGCTTTGGCT 62.836 57.895 36.24 0.00 41.60 4.75
193 194 3.322706 CTTGGGCGTACGCTTTGGC 62.323 63.158 36.24 20.87 41.60 4.52
194 195 1.964373 ACTTGGGCGTACGCTTTGG 60.964 57.895 36.24 25.23 41.60 3.28
195 196 1.206578 CACTTGGGCGTACGCTTTG 59.793 57.895 36.24 25.03 41.60 2.77
196 197 2.613506 GCACTTGGGCGTACGCTTT 61.614 57.895 36.24 15.57 41.60 3.51
197 198 3.047877 GCACTTGGGCGTACGCTT 61.048 61.111 36.24 15.24 41.60 4.68
205 206 5.334879 CCTGAAATTATATACGCACTTGGGC 60.335 44.000 0.00 0.00 0.00 5.36
206 207 5.334879 GCCTGAAATTATATACGCACTTGGG 60.335 44.000 0.00 0.00 0.00 4.12
207 208 5.614668 CGCCTGAAATTATATACGCACTTGG 60.615 44.000 0.00 0.00 0.00 3.61
208 209 5.374080 CGCCTGAAATTATATACGCACTTG 58.626 41.667 0.00 0.00 0.00 3.16
209 210 4.451096 CCGCCTGAAATTATATACGCACTT 59.549 41.667 0.00 0.00 0.00 3.16
210 211 3.994392 CCGCCTGAAATTATATACGCACT 59.006 43.478 0.00 0.00 0.00 4.40
211 212 3.744426 ACCGCCTGAAATTATATACGCAC 59.256 43.478 0.00 0.00 0.00 5.34
212 213 3.997762 ACCGCCTGAAATTATATACGCA 58.002 40.909 0.00 0.00 0.00 5.24
213 214 5.233689 GGATACCGCCTGAAATTATATACGC 59.766 44.000 0.00 0.00 0.00 4.42
214 215 6.255020 GTGGATACCGCCTGAAATTATATACG 59.745 42.308 0.00 0.00 0.00 3.06
215 216 7.535489 GTGGATACCGCCTGAAATTATATAC 57.465 40.000 0.00 0.00 0.00 1.47
247 248 7.713073 TGTTTTGTTTTCCTCTTCACTGTTTTT 59.287 29.630 0.00 0.00 0.00 1.94
248 249 7.213678 TGTTTTGTTTTCCTCTTCACTGTTTT 58.786 30.769 0.00 0.00 0.00 2.43
249 250 6.754193 TGTTTTGTTTTCCTCTTCACTGTTT 58.246 32.000 0.00 0.00 0.00 2.83
250 251 6.339587 TGTTTTGTTTTCCTCTTCACTGTT 57.660 33.333 0.00 0.00 0.00 3.16
251 252 5.975693 TGTTTTGTTTTCCTCTTCACTGT 57.024 34.783 0.00 0.00 0.00 3.55
252 253 8.807581 GTTTATGTTTTGTTTTCCTCTTCACTG 58.192 33.333 0.00 0.00 0.00 3.66
253 254 8.527810 TGTTTATGTTTTGTTTTCCTCTTCACT 58.472 29.630 0.00 0.00 0.00 3.41
254 255 8.696410 TGTTTATGTTTTGTTTTCCTCTTCAC 57.304 30.769 0.00 0.00 0.00 3.18
255 256 9.712305 TTTGTTTATGTTTTGTTTTCCTCTTCA 57.288 25.926 0.00 0.00 0.00 3.02
258 259 8.664798 GCTTTTGTTTATGTTTTGTTTTCCTCT 58.335 29.630 0.00 0.00 0.00 3.69
259 260 8.447053 TGCTTTTGTTTATGTTTTGTTTTCCTC 58.553 29.630 0.00 0.00 0.00 3.71
260 261 8.329203 TGCTTTTGTTTATGTTTTGTTTTCCT 57.671 26.923 0.00 0.00 0.00 3.36
261 262 9.008289 CATGCTTTTGTTTATGTTTTGTTTTCC 57.992 29.630 0.00 0.00 0.00 3.13
262 263 9.553418 ACATGCTTTTGTTTATGTTTTGTTTTC 57.447 25.926 0.00 0.00 30.05 2.29
264 265 9.980780 GTACATGCTTTTGTTTATGTTTTGTTT 57.019 25.926 0.00 0.00 35.55 2.83
265 266 8.324567 CGTACATGCTTTTGTTTATGTTTTGTT 58.675 29.630 0.00 0.00 35.55 2.83
266 267 7.043059 CCGTACATGCTTTTGTTTATGTTTTGT 60.043 33.333 0.00 0.00 35.55 2.83
267 268 7.043059 ACCGTACATGCTTTTGTTTATGTTTTG 60.043 33.333 0.00 0.00 35.55 2.44
268 269 6.981559 ACCGTACATGCTTTTGTTTATGTTTT 59.018 30.769 0.00 0.00 35.55 2.43
269 270 6.508777 ACCGTACATGCTTTTGTTTATGTTT 58.491 32.000 0.00 0.00 35.55 2.83
270 271 6.079424 ACCGTACATGCTTTTGTTTATGTT 57.921 33.333 0.00 0.00 35.55 2.71
271 272 5.699097 ACCGTACATGCTTTTGTTTATGT 57.301 34.783 0.00 0.00 37.51 2.29
272 273 7.358848 GGAAAACCGTACATGCTTTTGTTTATG 60.359 37.037 0.00 0.00 0.00 1.90
273 274 6.643360 GGAAAACCGTACATGCTTTTGTTTAT 59.357 34.615 0.00 0.00 0.00 1.40
274 275 5.978322 GGAAAACCGTACATGCTTTTGTTTA 59.022 36.000 0.00 0.00 0.00 2.01
275 276 4.806775 GGAAAACCGTACATGCTTTTGTTT 59.193 37.500 0.00 0.00 0.00 2.83
276 277 4.142138 TGGAAAACCGTACATGCTTTTGTT 60.142 37.500 0.00 0.00 0.00 2.83
277 278 3.381908 TGGAAAACCGTACATGCTTTTGT 59.618 39.130 0.00 0.00 0.00 2.83
278 279 3.971150 TGGAAAACCGTACATGCTTTTG 58.029 40.909 0.00 0.00 0.00 2.44
279 280 4.657436 TTGGAAAACCGTACATGCTTTT 57.343 36.364 0.00 0.00 0.00 2.27
280 281 4.657436 TTTGGAAAACCGTACATGCTTT 57.343 36.364 0.00 0.00 0.00 3.51
281 282 4.657436 TTTTGGAAAACCGTACATGCTT 57.343 36.364 0.00 0.00 0.00 3.91
282 283 4.864704 ATTTTGGAAAACCGTACATGCT 57.135 36.364 0.00 0.00 0.00 3.79
283 284 5.921408 TGTTATTTTGGAAAACCGTACATGC 59.079 36.000 0.00 0.00 0.00 4.06
284 285 9.068008 GTATGTTATTTTGGAAAACCGTACATG 57.932 33.333 0.00 0.00 0.00 3.21
285 286 8.794553 TGTATGTTATTTTGGAAAACCGTACAT 58.205 29.630 0.00 0.00 29.98 2.29
286 287 8.162878 TGTATGTTATTTTGGAAAACCGTACA 57.837 30.769 0.00 0.00 31.11 2.90
287 288 8.904712 GTTGTATGTTATTTTGGAAAACCGTAC 58.095 33.333 0.00 0.00 0.00 3.67
288 289 8.627403 TGTTGTATGTTATTTTGGAAAACCGTA 58.373 29.630 0.00 0.00 0.00 4.02
289 290 7.490000 TGTTGTATGTTATTTTGGAAAACCGT 58.510 30.769 0.00 0.00 0.00 4.83
290 291 7.650104 ACTGTTGTATGTTATTTTGGAAAACCG 59.350 33.333 0.00 0.00 0.00 4.44
291 292 8.880878 ACTGTTGTATGTTATTTTGGAAAACC 57.119 30.769 0.00 0.00 0.00 3.27
292 293 9.744468 AGACTGTTGTATGTTATTTTGGAAAAC 57.256 29.630 0.00 0.00 0.00 2.43
303 304 9.750125 CATGCTATTCTAGACTGTTGTATGTTA 57.250 33.333 0.00 0.00 0.00 2.41
304 305 8.260818 ACATGCTATTCTAGACTGTTGTATGTT 58.739 33.333 0.00 0.00 0.00 2.71
305 306 7.786030 ACATGCTATTCTAGACTGTTGTATGT 58.214 34.615 0.00 2.19 0.00 2.29
306 307 8.654230 AACATGCTATTCTAGACTGTTGTATG 57.346 34.615 0.00 1.60 0.00 2.39
307 308 9.102757 CAAACATGCTATTCTAGACTGTTGTAT 57.897 33.333 0.00 0.00 0.00 2.29
308 309 8.094548 ACAAACATGCTATTCTAGACTGTTGTA 58.905 33.333 0.00 0.00 0.00 2.41
309 310 6.936900 ACAAACATGCTATTCTAGACTGTTGT 59.063 34.615 0.00 0.00 0.00 3.32
310 311 7.369803 ACAAACATGCTATTCTAGACTGTTG 57.630 36.000 0.00 0.00 0.00 3.33
324 325 9.926158 TTTTTGACATTCATATACAAACATGCT 57.074 25.926 0.00 0.00 31.71 3.79
338 339 9.967451 TGGAGGTAGTATTATTTTTGACATTCA 57.033 29.630 0.00 0.00 0.00 2.57
352 353 8.993424 ACTCTATTGTGAAATGGAGGTAGTATT 58.007 33.333 14.02 0.00 40.69 1.89
353 354 8.424918 CACTCTATTGTGAAATGGAGGTAGTAT 58.575 37.037 14.02 0.00 40.69 2.12
354 355 7.632898 GCACTCTATTGTGAAATGGAGGTAGTA 60.633 40.741 14.02 0.00 40.69 1.82
355 356 6.644347 CACTCTATTGTGAAATGGAGGTAGT 58.356 40.000 14.02 0.00 40.69 2.73
356 357 5.525378 GCACTCTATTGTGAAATGGAGGTAG 59.475 44.000 14.02 6.74 40.69 3.18
357 358 5.428253 GCACTCTATTGTGAAATGGAGGTA 58.572 41.667 14.02 0.00 40.69 3.08
358 359 4.265073 GCACTCTATTGTGAAATGGAGGT 58.735 43.478 14.02 1.03 40.69 3.85
359 360 3.310774 CGCACTCTATTGTGAAATGGAGG 59.689 47.826 14.02 6.43 40.69 4.30
360 361 3.935203 ACGCACTCTATTGTGAAATGGAG 59.065 43.478 9.48 9.48 41.70 3.86
361 362 3.937814 ACGCACTCTATTGTGAAATGGA 58.062 40.909 0.00 0.00 40.12 3.41
362 363 5.991328 ATACGCACTCTATTGTGAAATGG 57.009 39.130 0.00 0.00 40.12 3.16
363 364 9.411801 ACTATATACGCACTCTATTGTGAAATG 57.588 33.333 0.00 0.00 40.12 2.32
364 365 9.982651 AACTATATACGCACTCTATTGTGAAAT 57.017 29.630 0.00 0.00 40.12 2.17
365 366 9.811995 AAACTATATACGCACTCTATTGTGAAA 57.188 29.630 0.00 0.00 40.12 2.69
366 367 9.811995 AAAACTATATACGCACTCTATTGTGAA 57.188 29.630 0.00 0.00 40.12 3.18
367 368 9.811995 AAAAACTATATACGCACTCTATTGTGA 57.188 29.630 0.00 0.00 40.12 3.58
374 375 8.997621 TTTCAGAAAAACTATATACGCACTCT 57.002 30.769 0.00 0.00 0.00 3.24
375 376 8.870879 ACTTTCAGAAAAACTATATACGCACTC 58.129 33.333 0.00 0.00 0.00 3.51
376 377 8.773404 ACTTTCAGAAAAACTATATACGCACT 57.227 30.769 0.00 0.00 0.00 4.40
377 378 8.653338 TGACTTTCAGAAAAACTATATACGCAC 58.347 33.333 0.00 0.00 0.00 5.34
378 379 8.766000 TGACTTTCAGAAAAACTATATACGCA 57.234 30.769 0.00 0.00 0.00 5.24
497 498 8.985805 CACTTACTAAAACCGAAGAAGTACAAT 58.014 33.333 0.00 0.00 0.00 2.71
498 499 7.981225 ACACTTACTAAAACCGAAGAAGTACAA 59.019 33.333 0.00 0.00 0.00 2.41
499 500 7.491682 ACACTTACTAAAACCGAAGAAGTACA 58.508 34.615 0.00 0.00 0.00 2.90
500 501 7.649306 TGACACTTACTAAAACCGAAGAAGTAC 59.351 37.037 0.00 0.00 0.00 2.73
501 502 7.715657 TGACACTTACTAAAACCGAAGAAGTA 58.284 34.615 0.00 0.00 0.00 2.24
502 503 6.576185 TGACACTTACTAAAACCGAAGAAGT 58.424 36.000 0.00 0.00 0.00 3.01
503 504 7.384115 TCATGACACTTACTAAAACCGAAGAAG 59.616 37.037 0.00 0.00 0.00 2.85
504 505 7.211573 TCATGACACTTACTAAAACCGAAGAA 58.788 34.615 0.00 0.00 0.00 2.52
505 506 6.751157 TCATGACACTTACTAAAACCGAAGA 58.249 36.000 0.00 0.00 0.00 2.87
506 507 7.596749 ATCATGACACTTACTAAAACCGAAG 57.403 36.000 0.00 0.00 0.00 3.79
507 508 7.972832 AATCATGACACTTACTAAAACCGAA 57.027 32.000 0.00 0.00 0.00 4.30
508 509 7.972832 AAATCATGACACTTACTAAAACCGA 57.027 32.000 0.00 0.00 0.00 4.69
509 510 8.901748 CAAAAATCATGACACTTACTAAAACCG 58.098 33.333 0.00 0.00 0.00 4.44
510 511 9.744468 ACAAAAATCATGACACTTACTAAAACC 57.256 29.630 0.00 0.00 0.00 3.27
519 520 9.252962 GAGATTTGAACAAAAATCATGACACTT 57.747 29.630 0.00 0.00 45.20 3.16
520 521 8.636213 AGAGATTTGAACAAAAATCATGACACT 58.364 29.630 0.00 0.00 45.20 3.55
521 522 8.807667 AGAGATTTGAACAAAAATCATGACAC 57.192 30.769 0.00 0.00 45.20 3.67
522 523 8.084073 GGAGAGATTTGAACAAAAATCATGACA 58.916 33.333 0.00 0.00 45.20 3.58
523 524 8.084073 TGGAGAGATTTGAACAAAAATCATGAC 58.916 33.333 0.00 1.83 45.20 3.06
524 525 8.180706 TGGAGAGATTTGAACAAAAATCATGA 57.819 30.769 0.00 0.00 45.20 3.07
525 526 8.997621 ATGGAGAGATTTGAACAAAAATCATG 57.002 30.769 11.14 0.00 45.20 3.07
527 528 9.480053 GAAATGGAGAGATTTGAACAAAAATCA 57.520 29.630 11.14 0.00 45.20 2.57
528 529 9.480053 TGAAATGGAGAGATTTGAACAAAAATC 57.520 29.630 4.12 5.75 43.79 2.17
529 530 9.835389 TTGAAATGGAGAGATTTGAACAAAAAT 57.165 25.926 4.12 0.00 33.56 1.82
530 531 9.664332 TTTGAAATGGAGAGATTTGAACAAAAA 57.336 25.926 4.12 0.00 33.56 1.94
531 532 9.664332 TTTTGAAATGGAGAGATTTGAACAAAA 57.336 25.926 4.12 0.00 31.18 2.44
532 533 9.835389 ATTTTGAAATGGAGAGATTTGAACAAA 57.165 25.926 2.48 2.48 34.46 2.83
538 539 8.866956 GCACTTATTTTGAAATGGAGAGATTTG 58.133 33.333 0.00 0.00 0.00 2.32
539 540 8.037166 GGCACTTATTTTGAAATGGAGAGATTT 58.963 33.333 0.00 0.00 0.00 2.17
540 541 7.550712 GGCACTTATTTTGAAATGGAGAGATT 58.449 34.615 0.00 0.00 0.00 2.40
541 542 6.183360 CGGCACTTATTTTGAAATGGAGAGAT 60.183 38.462 0.00 0.00 0.00 2.75
542 543 5.123820 CGGCACTTATTTTGAAATGGAGAGA 59.876 40.000 0.00 0.00 0.00 3.10
543 544 5.106157 ACGGCACTTATTTTGAAATGGAGAG 60.106 40.000 0.00 0.00 0.00 3.20
544 545 4.764823 ACGGCACTTATTTTGAAATGGAGA 59.235 37.500 0.00 0.00 0.00 3.71
545 546 4.858692 CACGGCACTTATTTTGAAATGGAG 59.141 41.667 0.00 1.06 0.00 3.86
546 547 4.321601 CCACGGCACTTATTTTGAAATGGA 60.322 41.667 0.00 0.00 0.00 3.41
547 548 3.925913 CCACGGCACTTATTTTGAAATGG 59.074 43.478 0.00 0.00 0.00 3.16
548 549 4.555262 ACCACGGCACTTATTTTGAAATG 58.445 39.130 0.00 0.00 0.00 2.32
549 550 4.864704 ACCACGGCACTTATTTTGAAAT 57.135 36.364 0.00 0.00 0.00 2.17
550 551 4.657436 AACCACGGCACTTATTTTGAAA 57.343 36.364 0.00 0.00 0.00 2.69
551 552 4.657436 AAACCACGGCACTTATTTTGAA 57.343 36.364 0.00 0.00 0.00 2.69
552 553 4.657436 AAAACCACGGCACTTATTTTGA 57.343 36.364 0.00 0.00 0.00 2.69
553 554 5.525199 ACTAAAACCACGGCACTTATTTTG 58.475 37.500 0.00 0.00 0.00 2.44
554 555 5.777850 ACTAAAACCACGGCACTTATTTT 57.222 34.783 0.00 0.00 0.00 1.82
555 556 5.299782 TGAACTAAAACCACGGCACTTATTT 59.700 36.000 0.00 0.00 0.00 1.40
556 557 4.822896 TGAACTAAAACCACGGCACTTATT 59.177 37.500 0.00 0.00 0.00 1.40
557 558 4.391155 TGAACTAAAACCACGGCACTTAT 58.609 39.130 0.00 0.00 0.00 1.73
558 559 3.806380 TGAACTAAAACCACGGCACTTA 58.194 40.909 0.00 0.00 0.00 2.24
559 560 2.645802 TGAACTAAAACCACGGCACTT 58.354 42.857 0.00 0.00 0.00 3.16
560 561 2.335316 TGAACTAAAACCACGGCACT 57.665 45.000 0.00 0.00 0.00 4.40
561 562 2.723209 GTTGAACTAAAACCACGGCAC 58.277 47.619 0.00 0.00 0.00 5.01
562 563 1.331138 CGTTGAACTAAAACCACGGCA 59.669 47.619 0.00 0.00 0.00 5.69
563 564 1.334329 CCGTTGAACTAAAACCACGGC 60.334 52.381 0.00 0.00 32.75 5.68
564 565 2.211806 TCCGTTGAACTAAAACCACGG 58.788 47.619 2.09 2.09 40.43 4.94
565 566 2.222445 CCTCCGTTGAACTAAAACCACG 59.778 50.000 0.00 0.00 0.00 4.94
566 567 2.551032 CCCTCCGTTGAACTAAAACCAC 59.449 50.000 0.00 0.00 0.00 4.16
567 568 2.438763 TCCCTCCGTTGAACTAAAACCA 59.561 45.455 0.00 0.00 0.00 3.67
568 569 3.072211 CTCCCTCCGTTGAACTAAAACC 58.928 50.000 0.00 0.00 0.00 3.27
569 570 3.736720 ACTCCCTCCGTTGAACTAAAAC 58.263 45.455 0.00 0.00 0.00 2.43
570 571 5.750352 ATACTCCCTCCGTTGAACTAAAA 57.250 39.130 0.00 0.00 0.00 1.52
571 572 8.582437 CATATATACTCCCTCCGTTGAACTAAA 58.418 37.037 0.00 0.00 0.00 1.85
572 573 7.727186 ACATATATACTCCCTCCGTTGAACTAA 59.273 37.037 0.00 0.00 0.00 2.24
573 574 7.236529 ACATATATACTCCCTCCGTTGAACTA 58.763 38.462 0.00 0.00 0.00 2.24
574 575 6.075984 ACATATATACTCCCTCCGTTGAACT 58.924 40.000 0.00 0.00 0.00 3.01
575 576 6.342338 ACATATATACTCCCTCCGTTGAAC 57.658 41.667 0.00 0.00 0.00 3.18
576 577 6.989155 AACATATATACTCCCTCCGTTGAA 57.011 37.500 0.00 0.00 0.00 2.69
577 578 6.989155 AAACATATATACTCCCTCCGTTGA 57.011 37.500 0.00 0.00 0.00 3.18
578 579 7.893658 ACTAAACATATATACTCCCTCCGTTG 58.106 38.462 0.00 0.00 0.00 4.10
579 580 9.592196 TTACTAAACATATATACTCCCTCCGTT 57.408 33.333 0.00 0.00 0.00 4.44
580 581 9.765295 ATTACTAAACATATATACTCCCTCCGT 57.235 33.333 0.00 0.00 0.00 4.69
594 595 8.517878 GCGGGTATCTCTACATTACTAAACATA 58.482 37.037 0.00 0.00 0.00 2.29
595 596 7.014905 TGCGGGTATCTCTACATTACTAAACAT 59.985 37.037 0.00 0.00 0.00 2.71
596 597 6.321945 TGCGGGTATCTCTACATTACTAAACA 59.678 38.462 0.00 0.00 0.00 2.83
597 598 6.742109 TGCGGGTATCTCTACATTACTAAAC 58.258 40.000 0.00 0.00 0.00 2.01
598 599 6.964807 TGCGGGTATCTCTACATTACTAAA 57.035 37.500 0.00 0.00 0.00 1.85
599 600 7.534723 AATGCGGGTATCTCTACATTACTAA 57.465 36.000 0.00 0.00 0.00 2.24
600 601 7.534723 AAATGCGGGTATCTCTACATTACTA 57.465 36.000 0.00 0.00 0.00 1.82
601 602 6.420913 AAATGCGGGTATCTCTACATTACT 57.579 37.500 0.00 0.00 0.00 2.24
602 603 7.492352 AAAAATGCGGGTATCTCTACATTAC 57.508 36.000 0.00 0.00 0.00 1.89
705 706 4.511527 ACAGACTTACTTCCTGATGCATG 58.488 43.478 2.46 0.00 0.00 4.06
711 712 2.872732 ACGGACAGACTTACTTCCTGA 58.127 47.619 0.00 0.00 0.00 3.86
813 815 2.689034 GCCTGGGTGGGAGCTACT 60.689 66.667 0.00 0.00 36.00 2.57
920 922 1.605165 GAGAGGGGAGGCGATCGAT 60.605 63.158 21.57 6.07 0.00 3.59
950 952 2.716217 GAGAGATGTTTTGGTGGGGAG 58.284 52.381 0.00 0.00 0.00 4.30
1242 1244 2.577059 TCGGAGACATCGTTGCCC 59.423 61.111 0.00 0.00 0.00 5.36
1284 1286 0.325933 CCTGGTCCACTGCAAGATCA 59.674 55.000 0.00 0.00 37.43 2.92
1293 1295 1.051812 CAGTGAAGTCCTGGTCCACT 58.948 55.000 0.00 0.00 38.48 4.00
1342 1344 4.816984 GACCCTCTCCGCCTCCGA 62.817 72.222 0.00 0.00 36.29 4.55
1343 1345 4.824515 AGACCCTCTCCGCCTCCG 62.825 72.222 0.00 0.00 0.00 4.63
1425 1427 4.057428 ACGAGCTGAGGCGACACC 62.057 66.667 0.00 0.00 44.37 4.16
1865 1867 2.599597 CCCAGCCTTCCATGAGGG 59.400 66.667 0.00 0.00 37.29 4.30
2151 2153 3.533146 TGTAGGTACCTCCATGGGAAAA 58.467 45.455 20.32 0.00 41.11 2.29
2541 2543 4.288366 TCCAACATCTCCTGGAAATACACA 59.712 41.667 0.00 0.00 38.81 3.72
2544 2546 4.843728 TGTCCAACATCTCCTGGAAATAC 58.156 43.478 0.00 0.00 43.32 1.89
2632 2634 2.419297 CCATCTCCTGTGCCAGACTAAC 60.419 54.545 4.00 0.00 32.44 2.34
2654 2656 5.505780 TCCGTAATCCATCCAACTTCAAAT 58.494 37.500 0.00 0.00 0.00 2.32
2685 2687 1.358877 TGATTCCTCAACGACGCATG 58.641 50.000 0.00 0.00 0.00 4.06
2750 2752 5.009610 ACAATTTTGACCGAGCTACATTGTT 59.990 36.000 0.00 0.00 0.00 2.83
2753 2755 5.938125 ACTACAATTTTGACCGAGCTACATT 59.062 36.000 0.00 0.00 0.00 2.71
2763 2765 7.739498 TTCCTCTGTTACTACAATTTTGACC 57.261 36.000 0.00 0.00 32.92 4.02
2775 2777 6.205658 GCAATTCTGAAGTTTCCTCTGTTACT 59.794 38.462 0.00 0.00 0.00 2.24
2860 2862 9.264653 TCTCATCCTATATTGATGCTACTGAAT 57.735 33.333 9.10 0.00 39.54 2.57
2876 2878 5.411103 ACCAGGTAAGTCTCTCATCCTAT 57.589 43.478 0.00 0.00 0.00 2.57
2881 2883 3.698289 TCGAACCAGGTAAGTCTCTCAT 58.302 45.455 0.00 0.00 0.00 2.90
2889 2891 2.737252 GAGCTTGTTCGAACCAGGTAAG 59.263 50.000 27.71 22.02 33.27 2.34
2894 2896 0.514691 GCTGAGCTTGTTCGAACCAG 59.485 55.000 24.78 23.14 0.00 4.00
2900 2902 2.606725 CCATCTTAGCTGAGCTTGTTCG 59.393 50.000 14.14 0.00 40.44 3.95
2936 3281 9.010366 GCATTTTGTAAAGAATTCGGTTATCTC 57.990 33.333 0.00 0.00 0.00 2.75
2937 3282 8.519526 TGCATTTTGTAAAGAATTCGGTTATCT 58.480 29.630 0.00 0.00 0.00 1.98
2938 3283 8.682128 TGCATTTTGTAAAGAATTCGGTTATC 57.318 30.769 0.00 0.40 0.00 1.75
2939 3284 9.086336 CATGCATTTTGTAAAGAATTCGGTTAT 57.914 29.630 0.00 0.00 0.00 1.89
2945 3290 7.585286 TCAGCATGCATTTTGTAAAGAATTC 57.415 32.000 21.98 0.00 34.76 2.17
2949 3294 7.783090 TTTTTCAGCATGCATTTTGTAAAGA 57.217 28.000 21.98 4.98 34.76 2.52
2966 3311 5.827568 ATAAGCGTTGCACAATTTTTCAG 57.172 34.783 0.00 0.00 0.00 3.02
2968 3313 8.647226 AGAATAATAAGCGTTGCACAATTTTTC 58.353 29.630 0.00 0.29 0.00 2.29
2996 3341 9.764363 CTATCTATGGTTGTAGTTGCTAATGAA 57.236 33.333 0.00 0.00 0.00 2.57
3035 3380 2.644299 ACCTGTCATTGATCTGGTCCAA 59.356 45.455 0.00 0.00 31.93 3.53
3040 3385 4.212143 TCTCAACCTGTCATTGATCTGG 57.788 45.455 0.00 0.84 35.57 3.86
3046 3391 3.181513 CGAGCAATCTCAACCTGTCATTG 60.182 47.826 0.00 0.00 39.30 2.82
3049 3394 1.344438 ACGAGCAATCTCAACCTGTCA 59.656 47.619 0.00 0.00 39.30 3.58
3050 3395 2.086054 ACGAGCAATCTCAACCTGTC 57.914 50.000 0.00 0.00 39.30 3.51
3059 3404 5.824904 ATGCAAAAATCTACGAGCAATCT 57.175 34.783 0.00 0.00 35.45 2.40
3291 3640 7.701539 AACATAAATGAAGTTATCCTGCACA 57.298 32.000 0.00 0.00 28.84 4.57
3330 3679 6.538263 AGGAATTTGTATAGCTGAAGGGATC 58.462 40.000 0.00 0.00 0.00 3.36
3468 3818 4.375272 AGAGTGTGATTCTAATGATGGCG 58.625 43.478 0.00 0.00 0.00 5.69
3534 3884 6.558771 TGCATATCTATTCCATGAAAACCG 57.441 37.500 0.00 0.00 0.00 4.44
3554 3904 3.550820 ACAGGCACCGATATAAAATGCA 58.449 40.909 0.00 0.00 38.05 3.96
3568 3918 1.208052 TCTGCTGATTAGGACAGGCAC 59.792 52.381 0.00 0.00 36.09 5.01
3637 3987 8.261522 ACCTTGGCTTTATGTGAAAACTAAAAA 58.738 29.630 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.