Multiple sequence alignment - TraesCS5D01G308000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G308000 chr5D 100.000 2920 0 0 1 2920 404769626 404766707 0.000000e+00 5393.0
1 TraesCS5D01G308000 chr5D 85.979 756 82 14 2084 2823 507866301 507867048 0.000000e+00 787.0
2 TraesCS5D01G308000 chr5D 87.561 410 25 8 969 1360 404863762 404863361 4.440000e-123 451.0
3 TraesCS5D01G308000 chr5D 92.500 40 3 0 674 713 404865874 404865835 1.130000e-04 58.4
4 TraesCS5D01G308000 chr1D 90.490 715 63 4 2102 2816 403201348 403202057 0.000000e+00 939.0
5 TraesCS5D01G308000 chr1D 87.243 243 27 4 1661 1900 238457262 238457021 1.030000e-69 274.0
6 TraesCS5D01G308000 chr4D 91.530 673 47 8 2086 2757 442641009 442641672 0.000000e+00 918.0
7 TraesCS5D01G308000 chr3B 89.986 719 61 4 2102 2819 644321834 644321126 0.000000e+00 918.0
8 TraesCS5D01G308000 chr3B 89.205 704 62 6 2102 2805 29790388 29791077 0.000000e+00 867.0
9 TraesCS5D01G308000 chr5B 88.203 729 66 9 2084 2807 608314165 608314878 0.000000e+00 852.0
10 TraesCS5D01G308000 chr5B 86.962 744 79 6 2084 2819 483048754 483048021 0.000000e+00 821.0
11 TraesCS5D01G308000 chr5B 84.140 826 92 15 2102 2917 134030495 134029699 0.000000e+00 763.0
12 TraesCS5D01G308000 chr5B 86.864 609 41 24 898 1479 486035413 486034817 0.000000e+00 645.0
13 TraesCS5D01G308000 chr5B 90.303 495 25 14 585 1064 486001321 486000835 6.870000e-176 627.0
14 TraesCS5D01G308000 chr5B 85.657 495 60 9 87 578 486001998 486001512 7.220000e-141 510.0
15 TraesCS5D01G308000 chr5B 95.833 48 2 0 667 714 485873782 485873735 8.680000e-11 78.7
16 TraesCS5D01G308000 chr2B 88.210 704 78 4 2102 2805 687335776 687336474 0.000000e+00 835.0
17 TraesCS5D01G308000 chr3D 85.663 830 74 30 2102 2917 36536878 36537676 0.000000e+00 832.0
18 TraesCS5D01G308000 chr3D 86.008 243 32 2 1661 1901 592971766 592971524 2.890000e-65 259.0
19 TraesCS5D01G308000 chr5A 85.101 792 84 15 2145 2917 691278069 691277293 0.000000e+00 778.0
20 TraesCS5D01G308000 chr5A 89.913 575 44 7 941 1511 509225056 509225620 0.000000e+00 728.0
21 TraesCS5D01G308000 chr5A 83.193 833 88 25 2090 2917 59604288 59603503 0.000000e+00 715.0
22 TraesCS5D01G308000 chr5A 79.149 235 36 6 1131 1355 509229477 509229708 1.810000e-32 150.0
23 TraesCS5D01G308000 chr7B 83.995 781 78 17 2164 2918 678268 679027 0.000000e+00 706.0
24 TraesCS5D01G308000 chr4B 87.857 560 52 7 2359 2918 428988275 428988818 0.000000e+00 643.0
25 TraesCS5D01G308000 chr4B 89.238 223 24 0 1660 1882 574171817 574172039 2.220000e-71 279.0
26 TraesCS5D01G308000 chr2D 86.905 252 31 2 1658 1907 354984193 354983942 6.160000e-72 281.0
27 TraesCS5D01G308000 chr2D 82.937 252 20 7 2685 2917 129291338 129291091 3.810000e-49 206.0
28 TraesCS5D01G308000 chr2D 80.169 237 46 1 43 278 587277470 587277706 2.990000e-40 176.0
29 TraesCS5D01G308000 chr6B 87.755 245 22 5 1661 1900 77686944 77686703 2.220000e-71 279.0
30 TraesCS5D01G308000 chr3A 86.777 242 27 5 1662 1901 151650462 151650700 6.200000e-67 265.0
31 TraesCS5D01G308000 chr1B 85.597 243 31 4 1661 1901 7084628 7084868 4.830000e-63 252.0
32 TraesCS5D01G308000 chr1B 86.294 197 24 2 2724 2917 304187282 304187478 8.200000e-51 211.0
33 TraesCS5D01G308000 chr7A 85.774 239 31 3 1661 1897 60506398 60506635 1.740000e-62 250.0
34 TraesCS5D01G308000 chr7A 84.585 253 32 5 2514 2763 604220310 604220062 8.080000e-61 244.0
35 TraesCS5D01G308000 chr1A 85.776 232 30 2 1672 1901 3433133 3432903 2.910000e-60 243.0
36 TraesCS5D01G308000 chr6A 87.179 195 20 4 2728 2918 469159916 469159723 1.760000e-52 217.0
37 TraesCS5D01G308000 chr4A 78.543 247 49 2 32 278 90596041 90596283 3.010000e-35 159.0
38 TraesCS5D01G308000 chr2A 82.065 184 31 2 56 238 722124165 722124347 3.900000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G308000 chr5D 404766707 404769626 2919 True 5393.0 5393 100.0000 1 2920 1 chr5D.!!$R1 2919
1 TraesCS5D01G308000 chr5D 507866301 507867048 747 False 787.0 787 85.9790 2084 2823 1 chr5D.!!$F1 739
2 TraesCS5D01G308000 chr5D 404863361 404865874 2513 True 254.7 451 90.0305 674 1360 2 chr5D.!!$R2 686
3 TraesCS5D01G308000 chr1D 403201348 403202057 709 False 939.0 939 90.4900 2102 2816 1 chr1D.!!$F1 714
4 TraesCS5D01G308000 chr4D 442641009 442641672 663 False 918.0 918 91.5300 2086 2757 1 chr4D.!!$F1 671
5 TraesCS5D01G308000 chr3B 644321126 644321834 708 True 918.0 918 89.9860 2102 2819 1 chr3B.!!$R1 717
6 TraesCS5D01G308000 chr3B 29790388 29791077 689 False 867.0 867 89.2050 2102 2805 1 chr3B.!!$F1 703
7 TraesCS5D01G308000 chr5B 608314165 608314878 713 False 852.0 852 88.2030 2084 2807 1 chr5B.!!$F1 723
8 TraesCS5D01G308000 chr5B 483048021 483048754 733 True 821.0 821 86.9620 2084 2819 1 chr5B.!!$R2 735
9 TraesCS5D01G308000 chr5B 134029699 134030495 796 True 763.0 763 84.1400 2102 2917 1 chr5B.!!$R1 815
10 TraesCS5D01G308000 chr5B 486034817 486035413 596 True 645.0 645 86.8640 898 1479 1 chr5B.!!$R4 581
11 TraesCS5D01G308000 chr5B 486000835 486001998 1163 True 568.5 627 87.9800 87 1064 2 chr5B.!!$R5 977
12 TraesCS5D01G308000 chr2B 687335776 687336474 698 False 835.0 835 88.2100 2102 2805 1 chr2B.!!$F1 703
13 TraesCS5D01G308000 chr3D 36536878 36537676 798 False 832.0 832 85.6630 2102 2917 1 chr3D.!!$F1 815
14 TraesCS5D01G308000 chr5A 691277293 691278069 776 True 778.0 778 85.1010 2145 2917 1 chr5A.!!$R2 772
15 TraesCS5D01G308000 chr5A 59603503 59604288 785 True 715.0 715 83.1930 2090 2917 1 chr5A.!!$R1 827
16 TraesCS5D01G308000 chr5A 509225056 509229708 4652 False 439.0 728 84.5310 941 1511 2 chr5A.!!$F1 570
17 TraesCS5D01G308000 chr7B 678268 679027 759 False 706.0 706 83.9950 2164 2918 1 chr7B.!!$F1 754
18 TraesCS5D01G308000 chr4B 428988275 428988818 543 False 643.0 643 87.8570 2359 2918 1 chr4B.!!$F1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.026803 GACAAATGCGCGACTCCATC 59.973 55.0 12.10 0.0 0.0 3.51 F
666 862 0.029300 TCTGCGCAAACAAACAGCTC 59.971 50.0 13.05 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 3947 0.097325 TTTAAAATAGTGCGCCCGCG 59.903 50.0 4.18 4.36 45.51 6.46 R
2010 4334 0.250467 CCAAAGATCCGCCCGATGAT 60.250 55.0 0.00 0.00 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.544615 TGATCTGAACGCGTATCCG 57.455 52.632 14.46 9.20 37.07 4.18
19 20 0.736636 TGATCTGAACGCGTATCCGT 59.263 50.000 14.46 0.00 44.41 4.69
26 27 3.502237 ACGCGTATCCGTTTTGACT 57.498 47.368 11.67 0.00 38.47 3.41
27 28 1.343506 ACGCGTATCCGTTTTGACTC 58.656 50.000 11.67 0.00 38.47 3.36
28 29 1.336148 ACGCGTATCCGTTTTGACTCA 60.336 47.619 11.67 0.00 38.47 3.41
29 30 1.722464 CGCGTATCCGTTTTGACTCAA 59.278 47.619 0.00 0.00 36.15 3.02
30 31 2.222508 CGCGTATCCGTTTTGACTCAAG 60.223 50.000 0.00 0.00 36.15 3.02
31 32 2.474032 GCGTATCCGTTTTGACTCAAGC 60.474 50.000 0.00 0.00 36.15 4.01
32 33 2.222508 CGTATCCGTTTTGACTCAAGCG 60.223 50.000 9.52 9.52 0.00 4.68
33 34 1.156736 ATCCGTTTTGACTCAAGCGG 58.843 50.000 21.40 21.40 41.39 5.52
34 35 0.105224 TCCGTTTTGACTCAAGCGGA 59.895 50.000 23.99 23.99 43.97 5.54
35 36 0.234884 CCGTTTTGACTCAAGCGGAC 59.765 55.000 22.28 8.10 42.02 4.79
36 37 0.934496 CGTTTTGACTCAAGCGGACA 59.066 50.000 8.91 0.00 0.00 4.02
37 38 1.329292 CGTTTTGACTCAAGCGGACAA 59.671 47.619 8.91 0.00 0.00 3.18
38 39 2.223157 CGTTTTGACTCAAGCGGACAAA 60.223 45.455 8.91 0.00 0.00 2.83
39 40 3.548014 CGTTTTGACTCAAGCGGACAAAT 60.548 43.478 8.91 0.00 32.05 2.32
40 41 3.624326 TTTGACTCAAGCGGACAAATG 57.376 42.857 0.00 0.00 0.00 2.32
41 42 0.874390 TGACTCAAGCGGACAAATGC 59.126 50.000 0.00 0.00 0.00 3.56
42 43 0.179215 GACTCAAGCGGACAAATGCG 60.179 55.000 0.00 0.00 43.57 4.73
48 49 2.395690 CGGACAAATGCGCGACTC 59.604 61.111 12.10 0.00 30.90 3.36
49 50 2.785258 GGACAAATGCGCGACTCC 59.215 61.111 12.10 0.00 0.00 3.85
50 51 2.032634 GGACAAATGCGCGACTCCA 61.033 57.895 12.10 0.00 0.00 3.86
51 52 1.369091 GGACAAATGCGCGACTCCAT 61.369 55.000 12.10 0.00 0.00 3.41
52 53 0.026803 GACAAATGCGCGACTCCATC 59.973 55.000 12.10 0.00 0.00 3.51
53 54 1.353103 CAAATGCGCGACTCCATCC 59.647 57.895 12.10 0.00 0.00 3.51
54 55 1.819632 AAATGCGCGACTCCATCCC 60.820 57.895 12.10 0.00 0.00 3.85
55 56 3.757248 AATGCGCGACTCCATCCCC 62.757 63.158 12.10 0.00 0.00 4.81
57 58 4.467084 GCGCGACTCCATCCCCAA 62.467 66.667 12.10 0.00 0.00 4.12
58 59 2.267642 CGCGACTCCATCCCCAAA 59.732 61.111 0.00 0.00 0.00 3.28
59 60 1.153168 CGCGACTCCATCCCCAAAT 60.153 57.895 0.00 0.00 0.00 2.32
60 61 0.748005 CGCGACTCCATCCCCAAATT 60.748 55.000 0.00 0.00 0.00 1.82
61 62 1.025041 GCGACTCCATCCCCAAATTC 58.975 55.000 0.00 0.00 0.00 2.17
62 63 1.299541 CGACTCCATCCCCAAATTCG 58.700 55.000 0.00 0.00 0.00 3.34
63 64 1.680338 GACTCCATCCCCAAATTCGG 58.320 55.000 0.00 0.00 0.00 4.30
64 65 0.395724 ACTCCATCCCCAAATTCGGC 60.396 55.000 0.00 0.00 0.00 5.54
65 66 1.076339 TCCATCCCCAAATTCGGCC 60.076 57.895 0.00 0.00 0.00 6.13
66 67 2.133641 CCATCCCCAAATTCGGCCC 61.134 63.158 0.00 0.00 0.00 5.80
67 68 2.123897 ATCCCCAAATTCGGCCCG 60.124 61.111 0.00 0.00 0.00 6.13
68 69 2.991329 ATCCCCAAATTCGGCCCGT 61.991 57.895 1.63 0.00 0.00 5.28
69 70 2.508407 ATCCCCAAATTCGGCCCGTT 62.508 55.000 1.63 0.00 0.00 4.44
70 71 2.279810 CCCCAAATTCGGCCCGTTT 61.280 57.895 1.63 0.00 0.00 3.60
71 72 1.080161 CCCAAATTCGGCCCGTTTG 60.080 57.895 11.18 11.18 33.72 2.93
72 73 1.080161 CCAAATTCGGCCCGTTTGG 60.080 57.895 19.87 19.87 43.95 3.28
82 83 3.423154 CCGTTTGGCGTCAGGCTC 61.423 66.667 0.00 0.00 44.18 4.70
83 84 3.777925 CGTTTGGCGTCAGGCTCG 61.778 66.667 0.00 0.00 44.18 5.03
84 85 2.357034 GTTTGGCGTCAGGCTCGA 60.357 61.111 0.00 0.00 44.18 4.04
85 86 1.741770 GTTTGGCGTCAGGCTCGAT 60.742 57.895 0.00 0.00 44.18 3.59
92 93 1.212616 CGTCAGGCTCGATCCATTTC 58.787 55.000 8.23 0.00 0.00 2.17
121 122 1.079503 CTTGCTCCTAGTTTGCGTCC 58.920 55.000 0.00 0.00 0.00 4.79
123 124 0.394938 TGCTCCTAGTTTGCGTCCAA 59.605 50.000 0.00 0.00 0.00 3.53
137 138 1.144276 TCCAAACGGACAGCGAACA 59.856 52.632 0.00 0.00 0.00 3.18
141 142 0.179094 AAACGGACAGCGAACAGACA 60.179 50.000 0.00 0.00 0.00 3.41
142 143 0.597637 AACGGACAGCGAACAGACAG 60.598 55.000 0.00 0.00 0.00 3.51
149 150 2.780643 CGAACAGACAGCCATGCG 59.219 61.111 0.00 0.00 0.00 4.73
200 201 4.484872 GCCGCCCACCTACTTCCC 62.485 72.222 0.00 0.00 0.00 3.97
204 205 2.987125 CCCACCTACTTCCCACCG 59.013 66.667 0.00 0.00 0.00 4.94
209 210 2.267961 CTACTTCCCACCGCCCAC 59.732 66.667 0.00 0.00 0.00 4.61
213 214 1.301623 CTTCCCACCGCCCACATTA 59.698 57.895 0.00 0.00 0.00 1.90
219 220 1.529226 CACCGCCCACATTAAAGACA 58.471 50.000 0.00 0.00 0.00 3.41
249 250 1.507141 CGAACCCACTTGTCAGCCAC 61.507 60.000 0.00 0.00 0.00 5.01
251 252 1.645402 AACCCACTTGTCAGCCACCT 61.645 55.000 0.00 0.00 0.00 4.00
256 257 1.448540 CTTGTCAGCCACCTAGCCG 60.449 63.158 0.00 0.00 0.00 5.52
266 267 3.234730 CCTAGCCGCCCGATCCTT 61.235 66.667 0.00 0.00 0.00 3.36
402 405 0.460284 CCGGTTGGCTGCACTAGTAG 60.460 60.000 0.50 0.00 0.00 2.57
403 406 0.460284 CGGTTGGCTGCACTAGTAGG 60.460 60.000 0.50 0.00 0.00 3.18
419 423 0.759959 TAGGCAGACACCAAAACCGA 59.240 50.000 0.00 0.00 0.00 4.69
423 427 1.533129 GCAGACACCAAAACCGAACAC 60.533 52.381 0.00 0.00 0.00 3.32
424 428 1.011333 AGACACCAAAACCGAACACG 58.989 50.000 0.00 0.00 0.00 4.49
457 461 7.111317 CGTTTTTACGGACGCAAATAGTTAAAA 59.889 33.333 0.00 0.00 32.11 1.52
461 465 5.318349 ACGGACGCAAATAGTTAAAATTCG 58.682 37.500 0.00 0.00 0.00 3.34
468 472 7.325097 ACGCAAATAGTTAAAATTCGGACAAAG 59.675 33.333 0.00 0.00 0.00 2.77
470 474 7.115663 GCAAATAGTTAAAATTCGGACAAAGCA 59.884 33.333 0.00 0.00 0.00 3.91
472 476 7.681939 ATAGTTAAAATTCGGACAAAGCAGA 57.318 32.000 0.00 0.00 0.00 4.26
474 478 5.298276 AGTTAAAATTCGGACAAAGCAGACA 59.702 36.000 0.00 0.00 0.00 3.41
478 482 1.428448 TCGGACAAAGCAGACATTCG 58.572 50.000 0.00 0.00 0.00 3.34
484 488 2.948979 ACAAAGCAGACATTCGTTTGGA 59.051 40.909 0.00 0.00 33.33 3.53
490 494 3.614616 GCAGACATTCGTTTGGAGTCTAG 59.385 47.826 0.00 0.00 37.45 2.43
491 495 4.177026 CAGACATTCGTTTGGAGTCTAGG 58.823 47.826 0.00 0.00 37.45 3.02
493 497 2.904434 ACATTCGTTTGGAGTCTAGGGT 59.096 45.455 0.00 0.00 0.00 4.34
499 503 2.638363 GTTTGGAGTCTAGGGTTGGAGT 59.362 50.000 0.00 0.00 0.00 3.85
517 521 0.534203 GTTTGGCCTCGGAGTGACAA 60.534 55.000 3.32 9.76 0.00 3.18
551 555 2.675075 GGGCGCCTGGCACTTTTA 60.675 61.111 28.56 0.00 43.67 1.52
575 579 2.224548 ACCTGAGAAAGTTGCCTGGTAC 60.225 50.000 0.00 0.00 0.00 3.34
578 582 2.173782 TGAGAAAGTTGCCTGGTACCAA 59.826 45.455 17.11 0.00 0.00 3.67
580 584 1.265905 GAAAGTTGCCTGGTACCAACG 59.734 52.381 17.11 10.11 44.45 4.10
582 586 0.034896 AGTTGCCTGGTACCAACGAG 59.965 55.000 17.11 3.80 44.45 4.18
587 775 0.673644 CCTGGTACCAACGAGGCAAG 60.674 60.000 17.11 0.23 43.60 4.01
593 781 1.966451 CCAACGAGGCAAGTCCACC 60.966 63.158 0.00 0.00 37.29 4.61
601 789 2.328099 GCAAGTCCACCGAGGCAAG 61.328 63.158 0.00 0.00 37.29 4.01
640 828 0.512952 GGTGCTCACATTCACACGTC 59.487 55.000 2.21 0.00 35.04 4.34
642 830 0.392706 TGCTCACATTCACACGTCCT 59.607 50.000 0.00 0.00 0.00 3.85
644 832 1.337260 GCTCACATTCACACGTCCTCT 60.337 52.381 0.00 0.00 0.00 3.69
661 857 2.603173 CCTCTCTTCTGCGCAAACAAAC 60.603 50.000 13.05 0.00 0.00 2.93
662 858 2.013400 TCTCTTCTGCGCAAACAAACA 58.987 42.857 13.05 0.00 0.00 2.83
663 859 2.032054 TCTCTTCTGCGCAAACAAACAG 59.968 45.455 13.05 0.00 0.00 3.16
664 860 0.848305 CTTCTGCGCAAACAAACAGC 59.152 50.000 13.05 0.00 0.00 4.40
665 861 0.455410 TTCTGCGCAAACAAACAGCT 59.545 45.000 13.05 0.00 0.00 4.24
666 862 0.029300 TCTGCGCAAACAAACAGCTC 59.971 50.000 13.05 0.00 0.00 4.09
728 947 3.186205 CCATTTTTCAAATTCGCACACCC 59.814 43.478 0.00 0.00 0.00 4.61
739 958 4.007644 CACACCCCAGCTGCGAGA 62.008 66.667 8.66 0.00 0.00 4.04
845 1065 1.648504 CCCGTACGTCCTTTTCCATC 58.351 55.000 15.21 0.00 0.00 3.51
858 1078 0.742990 TTCCATCGCCGATTGGTCAC 60.743 55.000 0.00 0.00 37.67 3.67
888 1108 0.241213 CGTCTTCTTCCACGAGCTCA 59.759 55.000 15.40 0.00 38.32 4.26
943 1171 5.804639 TCCACAGTTTATGCTACATTCTGT 58.195 37.500 0.00 0.00 35.49 3.41
948 1176 4.878397 AGTTTATGCTACATTCTGTGAGCC 59.122 41.667 0.00 0.00 30.98 4.70
1338 3410 1.040339 GGAGACGGTGGAGATGCTCT 61.040 60.000 0.00 0.00 0.00 4.09
1425 3502 4.193334 TCGCTGTCGGCTGATCGG 62.193 66.667 0.00 0.00 39.13 4.18
1429 3506 1.215382 CTGTCGGCTGATCGGTTGA 59.785 57.895 0.00 0.00 0.00 3.18
1446 3523 4.624882 CGGTTGATCTGATCTATTAGCTGC 59.375 45.833 17.82 0.00 0.00 5.25
1467 3546 5.529791 TGCGAATAGTTCAGCTTATAGACC 58.470 41.667 0.00 0.00 32.88 3.85
1471 3550 6.809196 CGAATAGTTCAGCTTATAGACCCATC 59.191 42.308 0.00 0.00 0.00 3.51
1483 3562 5.786264 ATAGACCCATCAAGGTTACGTAG 57.214 43.478 0.00 0.00 41.42 3.51
1491 3570 7.144000 CCCATCAAGGTTACGTAGATACTAAC 58.856 42.308 0.00 0.00 34.66 2.34
1512 3591 8.409371 ACTAACTGCACATATATAGGATGATCG 58.591 37.037 0.54 0.00 0.00 3.69
1513 3592 6.154203 ACTGCACATATATAGGATGATCGG 57.846 41.667 0.54 3.94 0.00 4.18
1514 3593 5.658634 ACTGCACATATATAGGATGATCGGT 59.341 40.000 0.54 4.40 0.00 4.69
1515 3594 6.155221 ACTGCACATATATAGGATGATCGGTT 59.845 38.462 0.54 0.00 0.00 4.44
1516 3595 6.340522 TGCACATATATAGGATGATCGGTTG 58.659 40.000 0.54 0.00 0.00 3.77
1517 3596 6.154363 TGCACATATATAGGATGATCGGTTGA 59.846 38.462 0.54 0.00 0.00 3.18
1518 3597 7.147672 TGCACATATATAGGATGATCGGTTGAT 60.148 37.037 0.54 0.00 37.60 2.57
1538 3617 3.808466 TCGGTTGATCTGATCTTCCTG 57.192 47.619 17.82 14.23 0.00 3.86
1539 3618 3.099905 TCGGTTGATCTGATCTTCCTGT 58.900 45.455 17.82 0.00 0.00 4.00
1540 3619 3.131223 TCGGTTGATCTGATCTTCCTGTC 59.869 47.826 17.82 1.77 0.00 3.51
1541 3620 3.118992 CGGTTGATCTGATCTTCCTGTCA 60.119 47.826 17.82 0.00 0.00 3.58
1542 3621 4.621510 CGGTTGATCTGATCTTCCTGTCAA 60.622 45.833 17.82 1.02 0.00 3.18
1543 3622 5.435291 GGTTGATCTGATCTTCCTGTCAAT 58.565 41.667 17.82 0.00 0.00 2.57
1544 3623 6.586344 GGTTGATCTGATCTTCCTGTCAATA 58.414 40.000 17.82 0.00 0.00 1.90
1545 3624 6.705381 GGTTGATCTGATCTTCCTGTCAATAG 59.295 42.308 17.82 0.00 0.00 1.73
1546 3625 7.271511 GTTGATCTGATCTTCCTGTCAATAGT 58.728 38.462 17.82 0.00 0.00 2.12
1547 3626 7.429374 TGATCTGATCTTCCTGTCAATAGTT 57.571 36.000 17.82 0.00 0.00 2.24
1548 3627 7.495901 TGATCTGATCTTCCTGTCAATAGTTC 58.504 38.462 17.82 0.00 0.00 3.01
1549 3628 6.857437 TCTGATCTTCCTGTCAATAGTTCA 57.143 37.500 0.00 0.00 0.00 3.18
1550 3629 6.871844 TCTGATCTTCCTGTCAATAGTTCAG 58.128 40.000 0.00 0.00 36.49 3.02
1551 3630 5.982356 TGATCTTCCTGTCAATAGTTCAGG 58.018 41.667 4.30 4.30 46.94 3.86
1552 3631 5.485353 TGATCTTCCTGTCAATAGTTCAGGT 59.515 40.000 9.71 0.00 46.04 4.00
1553 3632 5.825593 TCTTCCTGTCAATAGTTCAGGTT 57.174 39.130 9.71 0.00 46.04 3.50
1554 3633 6.928348 TCTTCCTGTCAATAGTTCAGGTTA 57.072 37.500 9.71 0.82 46.04 2.85
1555 3634 7.496346 TCTTCCTGTCAATAGTTCAGGTTAT 57.504 36.000 9.71 0.00 46.04 1.89
1556 3635 8.603898 TCTTCCTGTCAATAGTTCAGGTTATA 57.396 34.615 9.71 0.00 46.04 0.98
1557 3636 8.696374 TCTTCCTGTCAATAGTTCAGGTTATAG 58.304 37.037 9.71 5.00 46.04 1.31
1558 3637 7.973048 TCCTGTCAATAGTTCAGGTTATAGT 57.027 36.000 9.71 0.00 46.04 2.12
1559 3638 8.375493 TCCTGTCAATAGTTCAGGTTATAGTT 57.625 34.615 9.71 0.00 46.04 2.24
1560 3639 9.483489 TCCTGTCAATAGTTCAGGTTATAGTTA 57.517 33.333 9.71 0.00 46.04 2.24
1561 3640 9.751542 CCTGTCAATAGTTCAGGTTATAGTTAG 57.248 37.037 0.00 0.00 42.42 2.34
1569 3648 8.362464 AGTTCAGGTTATAGTTAGACACATGA 57.638 34.615 0.00 0.00 0.00 3.07
1570 3649 8.812972 AGTTCAGGTTATAGTTAGACACATGAA 58.187 33.333 0.00 0.00 0.00 2.57
1571 3650 9.088512 GTTCAGGTTATAGTTAGACACATGAAG 57.911 37.037 0.00 0.00 0.00 3.02
1572 3651 7.782049 TCAGGTTATAGTTAGACACATGAAGG 58.218 38.462 0.00 0.00 0.00 3.46
1573 3652 6.480320 CAGGTTATAGTTAGACACATGAAGGC 59.520 42.308 0.00 0.00 0.00 4.35
1574 3653 6.384305 AGGTTATAGTTAGACACATGAAGGCT 59.616 38.462 0.00 0.97 0.00 4.58
1575 3654 6.480320 GGTTATAGTTAGACACATGAAGGCTG 59.520 42.308 0.00 0.00 0.00 4.85
1576 3655 5.683876 ATAGTTAGACACATGAAGGCTGT 57.316 39.130 0.00 0.00 0.00 4.40
1577 3656 6.791867 ATAGTTAGACACATGAAGGCTGTA 57.208 37.500 0.00 0.00 0.00 2.74
1578 3657 4.822026 AGTTAGACACATGAAGGCTGTAC 58.178 43.478 0.00 2.64 0.00 2.90
1579 3658 4.528596 AGTTAGACACATGAAGGCTGTACT 59.471 41.667 0.00 4.85 0.00 2.73
1580 3659 5.715279 AGTTAGACACATGAAGGCTGTACTA 59.285 40.000 0.00 0.00 0.00 1.82
1581 3660 6.210784 AGTTAGACACATGAAGGCTGTACTAA 59.789 38.462 0.00 1.37 0.00 2.24
1582 3661 5.483685 AGACACATGAAGGCTGTACTAAA 57.516 39.130 0.00 0.00 0.00 1.85
1583 3662 6.054860 AGACACATGAAGGCTGTACTAAAT 57.945 37.500 0.00 0.00 0.00 1.40
1584 3663 5.877012 AGACACATGAAGGCTGTACTAAATG 59.123 40.000 0.00 0.00 0.00 2.32
1585 3664 4.396166 ACACATGAAGGCTGTACTAAATGC 59.604 41.667 0.00 0.00 0.00 3.56
1586 3665 4.395854 CACATGAAGGCTGTACTAAATGCA 59.604 41.667 0.00 0.00 0.00 3.96
1587 3666 4.396166 ACATGAAGGCTGTACTAAATGCAC 59.604 41.667 0.00 0.00 0.00 4.57
1588 3667 4.014569 TGAAGGCTGTACTAAATGCACA 57.985 40.909 0.00 0.00 0.00 4.57
1589 3668 4.588899 TGAAGGCTGTACTAAATGCACAT 58.411 39.130 0.00 0.00 0.00 3.21
1590 3669 5.739959 TGAAGGCTGTACTAAATGCACATA 58.260 37.500 0.00 0.00 0.00 2.29
1591 3670 5.817296 TGAAGGCTGTACTAAATGCACATAG 59.183 40.000 6.15 6.15 0.00 2.23
1592 3671 4.130118 AGGCTGTACTAAATGCACATAGC 58.870 43.478 7.36 0.00 45.96 2.97
1610 3689 7.360691 GCACATAGCACGATGATTCTTTGATAT 60.361 37.037 0.00 0.00 44.79 1.63
1614 3693 7.418840 AGCACGATGATTCTTTGATATCTTC 57.581 36.000 3.98 0.00 0.00 2.87
1615 3694 7.215789 AGCACGATGATTCTTTGATATCTTCT 58.784 34.615 3.98 0.00 0.00 2.85
1668 3747 9.953697 AATACGAAGATTCTGTAGTACTTCATC 57.046 33.333 0.00 0.00 37.42 2.92
1669 3748 6.797454 ACGAAGATTCTGTAGTACTTCATCC 58.203 40.000 0.00 0.00 37.42 3.51
1670 3749 5.910166 CGAAGATTCTGTAGTACTTCATCCG 59.090 44.000 0.00 0.00 37.42 4.18
1671 3750 6.458478 CGAAGATTCTGTAGTACTTCATCCGT 60.458 42.308 0.00 0.00 37.42 4.69
1673 3752 7.171630 AGATTCTGTAGTACTTCATCCGTTT 57.828 36.000 0.00 0.00 0.00 3.60
1674 3753 7.259161 AGATTCTGTAGTACTTCATCCGTTTC 58.741 38.462 0.00 0.00 0.00 2.78
1676 3755 6.335471 TCTGTAGTACTTCATCCGTTTCAA 57.665 37.500 0.00 0.00 0.00 2.69
1677 3756 6.751157 TCTGTAGTACTTCATCCGTTTCAAA 58.249 36.000 0.00 0.00 0.00 2.69
1678 3757 7.211573 TCTGTAGTACTTCATCCGTTTCAAAA 58.788 34.615 0.00 0.00 0.00 2.44
1679 3758 7.876068 TCTGTAGTACTTCATCCGTTTCAAAAT 59.124 33.333 0.00 0.00 0.00 1.82
1680 3759 9.146984 CTGTAGTACTTCATCCGTTTCAAAATA 57.853 33.333 0.00 0.00 0.00 1.40
1681 3760 8.928733 TGTAGTACTTCATCCGTTTCAAAATAC 58.071 33.333 0.00 0.00 0.00 1.89
1682 3761 7.972832 AGTACTTCATCCGTTTCAAAATACA 57.027 32.000 0.00 0.00 0.00 2.29
1683 3762 8.029642 AGTACTTCATCCGTTTCAAAATACAG 57.970 34.615 0.00 0.00 0.00 2.74
1684 3763 6.877611 ACTTCATCCGTTTCAAAATACAGT 57.122 33.333 0.00 0.00 0.00 3.55
1685 3764 6.668323 ACTTCATCCGTTTCAAAATACAGTG 58.332 36.000 0.00 0.00 0.00 3.66
1686 3765 5.041951 TCATCCGTTTCAAAATACAGTGC 57.958 39.130 0.00 0.00 0.00 4.40
1687 3766 4.759693 TCATCCGTTTCAAAATACAGTGCT 59.240 37.500 0.00 0.00 0.00 4.40
1688 3767 5.240623 TCATCCGTTTCAAAATACAGTGCTT 59.759 36.000 0.00 0.00 0.00 3.91
1689 3768 5.508200 TCCGTTTCAAAATACAGTGCTTT 57.492 34.783 0.00 0.00 0.00 3.51
1690 3769 5.516090 TCCGTTTCAAAATACAGTGCTTTC 58.484 37.500 0.00 0.00 0.00 2.62
1691 3770 5.298276 TCCGTTTCAAAATACAGTGCTTTCT 59.702 36.000 0.00 0.00 0.00 2.52
1692 3771 5.625311 CCGTTTCAAAATACAGTGCTTTCTC 59.375 40.000 0.00 0.00 0.00 2.87
1693 3772 6.430451 CGTTTCAAAATACAGTGCTTTCTCT 58.570 36.000 0.00 0.00 0.00 3.10
1694 3773 7.307751 CCGTTTCAAAATACAGTGCTTTCTCTA 60.308 37.037 0.00 0.00 0.00 2.43
1695 3774 8.230486 CGTTTCAAAATACAGTGCTTTCTCTAT 58.770 33.333 0.00 0.00 0.00 1.98
1696 3775 9.899226 GTTTCAAAATACAGTGCTTTCTCTATT 57.101 29.630 0.00 0.00 0.00 1.73
1698 3777 8.268850 TCAAAATACAGTGCTTTCTCTATTCC 57.731 34.615 0.00 0.00 0.00 3.01
1699 3778 7.336931 TCAAAATACAGTGCTTTCTCTATTCCC 59.663 37.037 0.00 0.00 0.00 3.97
1700 3779 3.252974 ACAGTGCTTTCTCTATTCCCG 57.747 47.619 0.00 0.00 0.00 5.14
1701 3780 2.567615 ACAGTGCTTTCTCTATTCCCGT 59.432 45.455 0.00 0.00 0.00 5.28
1702 3781 2.932614 CAGTGCTTTCTCTATTCCCGTG 59.067 50.000 0.00 0.00 0.00 4.94
1703 3782 1.666189 GTGCTTTCTCTATTCCCGTGC 59.334 52.381 0.00 0.00 0.00 5.34
1704 3783 1.555075 TGCTTTCTCTATTCCCGTGCT 59.445 47.619 0.00 0.00 0.00 4.40
1705 3784 2.027192 TGCTTTCTCTATTCCCGTGCTT 60.027 45.455 0.00 0.00 0.00 3.91
1706 3785 2.609916 GCTTTCTCTATTCCCGTGCTTC 59.390 50.000 0.00 0.00 0.00 3.86
1707 3786 3.861840 CTTTCTCTATTCCCGTGCTTCA 58.138 45.455 0.00 0.00 0.00 3.02
1708 3787 3.973206 TTCTCTATTCCCGTGCTTCAA 57.027 42.857 0.00 0.00 0.00 2.69
1709 3788 3.526931 TCTCTATTCCCGTGCTTCAAG 57.473 47.619 0.00 0.00 0.00 3.02
1710 3789 2.832129 TCTCTATTCCCGTGCTTCAAGT 59.168 45.455 0.00 0.00 0.00 3.16
1711 3790 3.260884 TCTCTATTCCCGTGCTTCAAGTT 59.739 43.478 0.00 0.00 0.00 2.66
1712 3791 4.003648 CTCTATTCCCGTGCTTCAAGTTT 58.996 43.478 0.00 0.00 0.00 2.66
1713 3792 5.046878 TCTCTATTCCCGTGCTTCAAGTTTA 60.047 40.000 0.00 0.00 0.00 2.01
1714 3793 5.553123 TCTATTCCCGTGCTTCAAGTTTAA 58.447 37.500 0.00 0.00 0.00 1.52
1715 3794 3.974871 TTCCCGTGCTTCAAGTTTAAC 57.025 42.857 0.00 0.00 0.00 2.01
1716 3795 2.223745 TCCCGTGCTTCAAGTTTAACC 58.776 47.619 0.00 0.00 0.00 2.85
1717 3796 1.950909 CCCGTGCTTCAAGTTTAACCA 59.049 47.619 0.00 0.00 0.00 3.67
1718 3797 2.556622 CCCGTGCTTCAAGTTTAACCAT 59.443 45.455 0.00 0.00 0.00 3.55
1719 3798 3.754323 CCCGTGCTTCAAGTTTAACCATA 59.246 43.478 0.00 0.00 0.00 2.74
1720 3799 4.216687 CCCGTGCTTCAAGTTTAACCATAA 59.783 41.667 0.00 0.00 0.00 1.90
1721 3800 5.278561 CCCGTGCTTCAAGTTTAACCATAAA 60.279 40.000 0.00 0.00 0.00 1.40
1722 3801 6.386654 CCGTGCTTCAAGTTTAACCATAAAT 58.613 36.000 0.00 0.00 33.76 1.40
1723 3802 6.866248 CCGTGCTTCAAGTTTAACCATAAATT 59.134 34.615 0.00 0.00 33.76 1.82
1724 3803 7.383843 CCGTGCTTCAAGTTTAACCATAAATTT 59.616 33.333 0.00 0.00 33.76 1.82
1725 3804 9.400638 CGTGCTTCAAGTTTAACCATAAATTTA 57.599 29.630 0.00 0.00 31.49 1.40
1740 3819 9.320352 ACCATAAATTTAACCAATAAAATCGCC 57.680 29.630 1.21 0.00 37.06 5.54
1741 3820 9.541143 CCATAAATTTAACCAATAAAATCGCCT 57.459 29.630 1.21 0.00 37.06 5.52
1743 3822 6.902224 AATTTAACCAATAAAATCGCCTGC 57.098 33.333 0.00 0.00 37.06 4.85
1744 3823 2.559998 AACCAATAAAATCGCCTGCG 57.440 45.000 4.92 4.92 41.35 5.18
1745 3824 0.738389 ACCAATAAAATCGCCTGCGG 59.262 50.000 12.06 0.00 40.25 5.69
1746 3825 0.738389 CCAATAAAATCGCCTGCGGT 59.262 50.000 12.06 0.36 40.25 5.68
1747 3826 1.533756 CCAATAAAATCGCCTGCGGTG 60.534 52.381 12.06 2.26 40.25 4.94
1748 3827 0.738389 AATAAAATCGCCTGCGGTGG 59.262 50.000 12.06 0.00 40.25 4.61
1749 3828 1.101049 ATAAAATCGCCTGCGGTGGG 61.101 55.000 12.06 0.88 40.25 4.61
1750 3829 2.186602 TAAAATCGCCTGCGGTGGGA 62.187 55.000 12.06 5.91 40.25 4.37
1751 3830 3.976701 AAATCGCCTGCGGTGGGAG 62.977 63.158 12.06 0.00 40.25 4.30
1756 3835 2.597217 CCTGCGGTGGGAGCAAAA 60.597 61.111 0.00 0.00 44.67 2.44
1757 3836 2.629656 CCTGCGGTGGGAGCAAAAG 61.630 63.158 0.00 0.00 44.67 2.27
1758 3837 1.898574 CTGCGGTGGGAGCAAAAGT 60.899 57.895 0.00 0.00 44.67 2.66
1759 3838 1.454847 TGCGGTGGGAGCAAAAGTT 60.455 52.632 0.00 0.00 42.18 2.66
1760 3839 1.007387 GCGGTGGGAGCAAAAGTTG 60.007 57.895 0.00 0.00 34.19 3.16
1761 3840 1.734388 GCGGTGGGAGCAAAAGTTGT 61.734 55.000 0.00 0.00 34.19 3.32
1762 3841 1.600023 CGGTGGGAGCAAAAGTTGTA 58.400 50.000 0.00 0.00 0.00 2.41
1763 3842 1.265905 CGGTGGGAGCAAAAGTTGTAC 59.734 52.381 0.00 0.00 0.00 2.90
1764 3843 1.611977 GGTGGGAGCAAAAGTTGTACC 59.388 52.381 0.00 0.00 0.00 3.34
1765 3844 2.303175 GTGGGAGCAAAAGTTGTACCA 58.697 47.619 0.00 0.00 32.60 3.25
1766 3845 2.293399 GTGGGAGCAAAAGTTGTACCAG 59.707 50.000 0.00 0.00 33.08 4.00
1767 3846 2.092103 TGGGAGCAAAAGTTGTACCAGT 60.092 45.455 0.00 0.00 32.60 4.00
1768 3847 3.136809 TGGGAGCAAAAGTTGTACCAGTA 59.863 43.478 0.00 0.00 32.60 2.74
1769 3848 4.139038 GGGAGCAAAAGTTGTACCAGTAA 58.861 43.478 0.00 0.00 32.60 2.24
1770 3849 4.581409 GGGAGCAAAAGTTGTACCAGTAAA 59.419 41.667 0.00 0.00 32.60 2.01
1771 3850 5.243060 GGGAGCAAAAGTTGTACCAGTAAAT 59.757 40.000 0.00 0.00 32.60 1.40
1772 3851 6.239204 GGGAGCAAAAGTTGTACCAGTAAATT 60.239 38.462 0.00 0.00 32.60 1.82
1773 3852 6.861572 GGAGCAAAAGTTGTACCAGTAAATTC 59.138 38.462 0.00 0.00 0.00 2.17
1774 3853 6.435428 AGCAAAAGTTGTACCAGTAAATTCG 58.565 36.000 0.00 0.00 0.00 3.34
1775 3854 6.038936 AGCAAAAGTTGTACCAGTAAATTCGT 59.961 34.615 0.00 0.00 0.00 3.85
1776 3855 7.227116 AGCAAAAGTTGTACCAGTAAATTCGTA 59.773 33.333 0.00 0.00 0.00 3.43
1777 3856 8.019094 GCAAAAGTTGTACCAGTAAATTCGTAT 58.981 33.333 0.00 0.00 0.00 3.06
1778 3857 9.887406 CAAAAGTTGTACCAGTAAATTCGTATT 57.113 29.630 0.00 0.00 0.00 1.89
1780 3859 8.836268 AAGTTGTACCAGTAAATTCGTATTCA 57.164 30.769 0.00 0.00 0.00 2.57
1781 3860 8.836268 AGTTGTACCAGTAAATTCGTATTCAA 57.164 30.769 0.00 0.00 0.00 2.69
1782 3861 9.275398 AGTTGTACCAGTAAATTCGTATTCAAA 57.725 29.630 0.00 0.00 0.00 2.69
1783 3862 9.881529 GTTGTACCAGTAAATTCGTATTCAAAA 57.118 29.630 0.00 0.00 0.00 2.44
1784 3863 9.881529 TTGTACCAGTAAATTCGTATTCAAAAC 57.118 29.630 0.00 0.00 0.00 2.43
1785 3864 9.053840 TGTACCAGTAAATTCGTATTCAAAACA 57.946 29.630 0.00 0.00 0.00 2.83
1786 3865 9.881529 GTACCAGTAAATTCGTATTCAAAACAA 57.118 29.630 0.00 0.00 0.00 2.83
1788 3867 8.626526 ACCAGTAAATTCGTATTCAAAACAAGT 58.373 29.630 0.00 0.00 0.00 3.16
1789 3868 9.458374 CCAGTAAATTCGTATTCAAAACAAGTT 57.542 29.630 0.00 0.00 0.00 2.66
1822 3901 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
1823 3902 1.964373 TTTTTCTCCCGCCGCAGTC 60.964 57.895 0.00 0.00 0.00 3.51
1824 3903 2.668185 TTTTTCTCCCGCCGCAGTCA 62.668 55.000 0.00 0.00 0.00 3.41
1825 3904 3.589654 TTTCTCCCGCCGCAGTCAG 62.590 63.158 0.00 0.00 0.00 3.51
1827 3906 4.803426 CTCCCGCCGCAGTCAGTC 62.803 72.222 0.00 0.00 0.00 3.51
1829 3908 4.803426 CCCGCCGCAGTCAGTCTC 62.803 72.222 0.00 0.00 0.00 3.36
1831 3910 4.406173 CGCCGCAGTCAGTCTCGT 62.406 66.667 0.00 0.00 0.00 4.18
1832 3911 2.049063 GCCGCAGTCAGTCTCGTT 60.049 61.111 0.00 0.00 0.00 3.85
1833 3912 2.375766 GCCGCAGTCAGTCTCGTTG 61.376 63.158 0.00 0.00 0.00 4.10
1834 3913 1.734477 CCGCAGTCAGTCTCGTTGG 60.734 63.158 0.00 0.00 0.00 3.77
1835 3914 1.007271 CGCAGTCAGTCTCGTTGGT 60.007 57.895 0.00 0.00 0.00 3.67
1836 3915 0.597637 CGCAGTCAGTCTCGTTGGTT 60.598 55.000 0.00 0.00 0.00 3.67
1837 3916 1.335597 CGCAGTCAGTCTCGTTGGTTA 60.336 52.381 0.00 0.00 0.00 2.85
1838 3917 2.750948 GCAGTCAGTCTCGTTGGTTAA 58.249 47.619 0.00 0.00 0.00 2.01
1839 3918 3.128349 GCAGTCAGTCTCGTTGGTTAAA 58.872 45.455 0.00 0.00 0.00 1.52
1840 3919 3.746492 GCAGTCAGTCTCGTTGGTTAAAT 59.254 43.478 0.00 0.00 0.00 1.40
1841 3920 4.213482 GCAGTCAGTCTCGTTGGTTAAATT 59.787 41.667 0.00 0.00 0.00 1.82
1842 3921 5.277828 GCAGTCAGTCTCGTTGGTTAAATTT 60.278 40.000 0.00 0.00 0.00 1.82
1843 3922 6.073440 GCAGTCAGTCTCGTTGGTTAAATTTA 60.073 38.462 0.00 0.00 0.00 1.40
1844 3923 7.360946 GCAGTCAGTCTCGTTGGTTAAATTTAT 60.361 37.037 0.00 0.00 0.00 1.40
1845 3924 7.957484 CAGTCAGTCTCGTTGGTTAAATTTATG 59.043 37.037 0.00 0.00 0.00 1.90
1846 3925 7.876068 AGTCAGTCTCGTTGGTTAAATTTATGA 59.124 33.333 0.00 0.00 0.00 2.15
1847 3926 8.665685 GTCAGTCTCGTTGGTTAAATTTATGAT 58.334 33.333 0.00 0.00 0.00 2.45
1848 3927 8.879759 TCAGTCTCGTTGGTTAAATTTATGATC 58.120 33.333 0.00 0.00 0.00 2.92
1849 3928 8.664798 CAGTCTCGTTGGTTAAATTTATGATCA 58.335 33.333 0.00 0.00 0.00 2.92
1850 3929 9.226606 AGTCTCGTTGGTTAAATTTATGATCAA 57.773 29.630 0.00 0.00 0.00 2.57
1851 3930 9.834628 GTCTCGTTGGTTAAATTTATGATCAAA 57.165 29.630 0.00 0.00 0.00 2.69
1869 3948 7.295201 TGATCAAAATTAAACCTCGAGAAACG 58.705 34.615 15.71 0.00 44.09 3.60
1870 3949 5.445845 TCAAAATTAAACCTCGAGAAACGC 58.554 37.500 15.71 0.00 42.26 4.84
1871 3950 3.717350 AATTAAACCTCGAGAAACGCG 57.283 42.857 15.71 3.53 42.26 6.01
1880 3959 4.367023 AGAAACGCGGGCGCACTA 62.367 61.111 12.47 0.00 44.19 2.74
1881 3960 3.192922 GAAACGCGGGCGCACTAT 61.193 61.111 12.47 0.00 44.19 2.12
1882 3961 2.744709 AAACGCGGGCGCACTATT 60.745 55.556 12.47 0.00 44.19 1.73
1883 3962 2.248274 GAAACGCGGGCGCACTATTT 62.248 55.000 12.47 5.09 44.19 1.40
1884 3963 1.858372 AAACGCGGGCGCACTATTTT 61.858 50.000 12.47 0.09 44.19 1.82
1885 3964 1.020333 AACGCGGGCGCACTATTTTA 61.020 50.000 12.47 0.00 44.19 1.52
1886 3965 1.020333 ACGCGGGCGCACTATTTTAA 61.020 50.000 12.47 0.00 44.19 1.52
1887 3966 0.097325 CGCGGGCGCACTATTTTAAA 59.903 50.000 8.62 0.00 42.06 1.52
1888 3967 1.466024 CGCGGGCGCACTATTTTAAAA 60.466 47.619 8.62 2.51 42.06 1.52
1889 3968 2.793237 CGCGGGCGCACTATTTTAAAAT 60.793 45.455 17.18 17.18 42.06 1.82
1890 3969 2.533942 GCGGGCGCACTATTTTAAAATG 59.466 45.455 21.19 13.88 41.49 2.32
1891 3970 3.112580 CGGGCGCACTATTTTAAAATGG 58.887 45.455 21.19 20.25 33.62 3.16
1892 3971 3.181495 CGGGCGCACTATTTTAAAATGGA 60.181 43.478 25.66 7.16 32.04 3.41
1893 3972 4.359706 GGGCGCACTATTTTAAAATGGAG 58.640 43.478 25.66 19.95 32.04 3.86
1903 3982 9.628500 ACTATTTTAAAATGGAGGGAGTATGAC 57.372 33.333 25.66 0.00 32.04 3.06
1907 3986 5.632034 AAAATGGAGGGAGTATGACCTAC 57.368 43.478 0.00 0.00 37.18 3.18
1909 3988 3.028094 TGGAGGGAGTATGACCTACAC 57.972 52.381 0.00 0.00 42.75 2.90
1910 3989 2.585900 TGGAGGGAGTATGACCTACACT 59.414 50.000 0.00 0.00 42.75 3.55
1911 3990 3.224269 GGAGGGAGTATGACCTACACTC 58.776 54.545 0.00 0.00 37.66 3.51
1913 3992 2.241685 AGGGAGTATGACCTACACTCGT 59.758 50.000 0.00 0.00 39.68 4.18
1914 3993 3.022406 GGGAGTATGACCTACACTCGTT 58.978 50.000 0.00 0.00 39.68 3.85
1915 3994 3.066481 GGGAGTATGACCTACACTCGTTC 59.934 52.174 0.00 0.00 39.68 3.95
1916 3995 3.066481 GGAGTATGACCTACACTCGTTCC 59.934 52.174 0.00 0.00 39.68 3.62
1917 3996 3.946558 GAGTATGACCTACACTCGTTCCT 59.053 47.826 0.00 0.00 32.34 3.36
1918 3997 3.946558 AGTATGACCTACACTCGTTCCTC 59.053 47.826 0.00 0.00 32.34 3.71
1919 3998 2.281539 TGACCTACACTCGTTCCTCA 57.718 50.000 0.00 0.00 0.00 3.86
1920 3999 2.589720 TGACCTACACTCGTTCCTCAA 58.410 47.619 0.00 0.00 0.00 3.02
1921 4000 2.960384 TGACCTACACTCGTTCCTCAAA 59.040 45.455 0.00 0.00 0.00 2.69
1922 4001 3.385433 TGACCTACACTCGTTCCTCAAAA 59.615 43.478 0.00 0.00 0.00 2.44
1923 4002 4.141892 TGACCTACACTCGTTCCTCAAAAA 60.142 41.667 0.00 0.00 0.00 1.94
1953 4032 2.294233 ACCTACACTCGCGTCTTGTTTA 59.706 45.455 5.77 0.00 0.00 2.01
1954 4033 2.915463 CCTACACTCGCGTCTTGTTTAG 59.085 50.000 5.77 8.00 0.00 1.85
1967 4046 4.447724 GTCTTGTTTAGACGCATCAGTTGA 59.552 41.667 0.00 0.00 43.59 3.18
1968 4047 5.050363 GTCTTGTTTAGACGCATCAGTTGAA 60.050 40.000 0.00 0.00 43.59 2.69
1969 4048 4.725556 TGTTTAGACGCATCAGTTGAAC 57.274 40.909 0.00 0.00 0.00 3.18
1971 4050 3.678056 TTAGACGCATCAGTTGAACCT 57.322 42.857 0.00 0.00 0.00 3.50
1973 4052 2.851195 AGACGCATCAGTTGAACCTTT 58.149 42.857 0.00 0.00 0.00 3.11
1974 4053 3.214328 AGACGCATCAGTTGAACCTTTT 58.786 40.909 0.00 0.00 0.00 2.27
1976 4055 2.053627 CGCATCAGTTGAACCTTTTGC 58.946 47.619 0.00 0.00 0.00 3.68
1977 4056 2.287788 CGCATCAGTTGAACCTTTTGCT 60.288 45.455 0.00 0.00 0.00 3.91
1978 4057 3.058293 CGCATCAGTTGAACCTTTTGCTA 60.058 43.478 0.00 0.00 0.00 3.49
1980 4059 4.466828 CATCAGTTGAACCTTTTGCTACG 58.533 43.478 0.00 0.00 0.00 3.51
1981 4060 2.875933 TCAGTTGAACCTTTTGCTACGG 59.124 45.455 0.00 0.00 0.00 4.02
1982 4061 1.607148 AGTTGAACCTTTTGCTACGGC 59.393 47.619 0.00 0.00 39.26 5.68
1984 4308 2.809696 GTTGAACCTTTTGCTACGGCTA 59.190 45.455 0.00 0.00 39.59 3.93
1995 4319 5.699097 TTGCTACGGCTATTTTTCTTTGT 57.301 34.783 0.00 0.00 39.59 2.83
2001 4325 5.908341 ACGGCTATTTTTCTTTGTGGAAAA 58.092 33.333 0.00 0.00 41.54 2.29
2002 4326 6.521162 ACGGCTATTTTTCTTTGTGGAAAAT 58.479 32.000 3.74 0.00 42.38 1.82
2003 4327 6.423604 ACGGCTATTTTTCTTTGTGGAAAATG 59.576 34.615 5.25 0.72 42.38 2.32
2004 4328 6.602179 GGCTATTTTTCTTTGTGGAAAATGC 58.398 36.000 5.25 8.05 42.38 3.56
2005 4329 6.427853 GGCTATTTTTCTTTGTGGAAAATGCT 59.572 34.615 5.25 5.09 42.38 3.79
2006 4330 7.041167 GGCTATTTTTCTTTGTGGAAAATGCTT 60.041 33.333 5.25 0.00 42.38 3.91
2008 4332 6.434018 TTTTTCTTTGTGGAAAATGCTTGG 57.566 33.333 3.74 0.00 42.38 3.61
2010 4334 2.433604 TCTTTGTGGAAAATGCTTGGCA 59.566 40.909 0.00 0.00 44.86 4.92
2019 4343 2.829914 TGCTTGGCATCATCGGGC 60.830 61.111 0.00 0.00 31.71 6.13
2021 4345 3.282157 CTTGGCATCATCGGGCGG 61.282 66.667 0.00 0.00 0.00 6.13
2023 4347 3.118768 TTGGCATCATCGGGCGGAT 62.119 57.895 1.15 1.15 35.09 4.18
2024 4348 2.743928 GGCATCATCGGGCGGATC 60.744 66.667 4.37 0.00 31.28 3.36
2026 4350 1.302033 GCATCATCGGGCGGATCTT 60.302 57.895 4.37 0.00 31.28 2.40
2027 4351 0.886490 GCATCATCGGGCGGATCTTT 60.886 55.000 4.37 0.00 31.28 2.52
2028 4352 0.870393 CATCATCGGGCGGATCTTTG 59.130 55.000 4.37 0.00 31.28 2.77
2029 4353 0.250467 ATCATCGGGCGGATCTTTGG 60.250 55.000 4.37 0.00 31.28 3.28
2030 4354 2.203209 ATCGGGCGGATCTTTGGC 60.203 61.111 1.15 0.00 0.00 4.52
2031 4355 4.830765 TCGGGCGGATCTTTGGCG 62.831 66.667 0.00 0.00 0.00 5.69
2037 4361 4.223964 GGATCTTTGGCGCGCGTC 62.224 66.667 30.23 30.23 0.00 5.19
2038 4362 3.487202 GATCTTTGGCGCGCGTCA 61.487 61.111 35.76 35.76 0.00 4.35
2039 4363 3.425938 GATCTTTGGCGCGCGTCAG 62.426 63.158 36.58 26.24 0.00 3.51
2041 4365 4.430423 CTTTGGCGCGCGTCAGTC 62.430 66.667 36.58 16.75 0.00 3.51
2052 4376 2.920645 CGTCAGTCGCCTCCACAGT 61.921 63.158 0.00 0.00 0.00 3.55
2053 4377 1.080434 GTCAGTCGCCTCCACAGTC 60.080 63.158 0.00 0.00 0.00 3.51
2054 4378 2.126307 CAGTCGCCTCCACAGTCG 60.126 66.667 0.00 0.00 0.00 4.18
2056 4380 2.201022 AGTCGCCTCCACAGTCGTT 61.201 57.895 0.00 0.00 0.00 3.85
2057 4381 0.892358 AGTCGCCTCCACAGTCGTTA 60.892 55.000 0.00 0.00 0.00 3.18
2060 4384 0.456221 CGCCTCCACAGTCGTTAGAT 59.544 55.000 0.00 0.00 0.00 1.98
2061 4385 1.135083 CGCCTCCACAGTCGTTAGATT 60.135 52.381 0.00 0.00 0.00 2.40
2062 4386 2.098607 CGCCTCCACAGTCGTTAGATTA 59.901 50.000 0.00 0.00 0.00 1.75
2063 4387 3.428452 CGCCTCCACAGTCGTTAGATTAA 60.428 47.826 0.00 0.00 0.00 1.40
2065 4389 4.381718 GCCTCCACAGTCGTTAGATTAACT 60.382 45.833 0.00 0.00 36.54 2.24
2066 4390 5.721232 CCTCCACAGTCGTTAGATTAACTT 58.279 41.667 0.00 0.00 36.54 2.66
2067 4391 6.164176 CCTCCACAGTCGTTAGATTAACTTT 58.836 40.000 0.00 0.00 36.54 2.66
2068 4392 6.649557 CCTCCACAGTCGTTAGATTAACTTTT 59.350 38.462 0.00 0.00 36.54 2.27
2069 4393 7.816031 CCTCCACAGTCGTTAGATTAACTTTTA 59.184 37.037 0.00 0.00 36.54 1.52
2070 4394 8.752766 TCCACAGTCGTTAGATTAACTTTTAG 57.247 34.615 0.00 0.00 36.54 1.85
2071 4395 8.362639 TCCACAGTCGTTAGATTAACTTTTAGT 58.637 33.333 0.00 0.00 36.54 2.24
2072 4396 8.645487 CCACAGTCGTTAGATTAACTTTTAGTC 58.355 37.037 0.00 0.00 36.54 2.59
2073 4397 8.363755 CACAGTCGTTAGATTAACTTTTAGTCG 58.636 37.037 0.00 0.00 36.54 4.18
2074 4398 8.078596 ACAGTCGTTAGATTAACTTTTAGTCGT 58.921 33.333 0.00 0.00 36.54 4.34
2076 4400 7.061557 AGTCGTTAGATTAACTTTTAGTCGTGC 59.938 37.037 0.00 0.00 36.54 5.34
2077 4401 6.032775 TCGTTAGATTAACTTTTAGTCGTGCG 59.967 38.462 0.00 0.00 36.54 5.34
2078 4402 6.464311 GTTAGATTAACTTTTAGTCGTGCGG 58.536 40.000 0.00 0.00 35.81 5.69
2079 4403 3.370061 AGATTAACTTTTAGTCGTGCGGC 59.630 43.478 0.00 0.00 0.00 6.53
2081 4405 0.584876 AACTTTTAGTCGTGCGGCAC 59.415 50.000 22.78 22.78 0.00 5.01
2082 4406 0.531090 ACTTTTAGTCGTGCGGCACA 60.531 50.000 30.23 16.03 33.40 4.57
2092 4967 1.581934 GTGCGGCACATAAGAGCATA 58.418 50.000 27.10 0.00 40.11 3.14
2222 5106 2.356313 CTGCTCCAACAGACGCGT 60.356 61.111 13.85 13.85 40.25 6.01
2239 5127 3.342627 TTAAACTGCAGCGCGCGT 61.343 55.556 32.35 15.05 46.97 6.01
2382 5284 2.631267 TCATGTCCACAACATCATCCG 58.369 47.619 0.00 0.00 45.78 4.18
2384 5286 2.849294 TGTCCACAACATCATCCGAA 57.151 45.000 0.00 0.00 31.20 4.30
2401 5305 3.496884 TCCGAACAAGTTCAAAATCCGAG 59.503 43.478 12.86 0.00 39.46 4.63
2504 5429 5.404395 TCCTCTGATTCATCATCCTCATCT 58.596 41.667 0.00 0.00 36.02 2.90
2614 5542 2.636647 TGCAAAGGTGTGTGATGAGA 57.363 45.000 0.00 0.00 0.00 3.27
2627 5555 3.580022 TGTGATGAGACACACTGGAAGAT 59.420 43.478 0.00 0.00 44.29 2.40
2668 5600 1.678970 GTGTTCCCATGCCTCCCAC 60.679 63.158 0.00 0.00 0.00 4.61
2765 5706 2.766925 GCCACCCATGCCTCCCATA 61.767 63.158 0.00 0.00 31.47 2.74
2805 5746 2.203252 CACCGATGCCTCCCATGG 60.203 66.667 4.14 4.14 33.29 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.093783 CCGCTTGAGTCAAAACGGATAC 59.906 50.000 29.87 5.39 42.16 2.24
13 14 2.028839 TCCGCTTGAGTCAAAACGGATA 60.029 45.455 31.17 18.80 42.82 2.59
14 15 1.156736 CCGCTTGAGTCAAAACGGAT 58.843 50.000 29.87 0.00 42.16 4.18
15 16 0.105224 TCCGCTTGAGTCAAAACGGA 59.895 50.000 31.17 31.17 44.28 4.69
16 17 0.234884 GTCCGCTTGAGTCAAAACGG 59.765 55.000 28.66 28.66 41.46 4.44
17 18 0.934496 TGTCCGCTTGAGTCAAAACG 59.066 50.000 16.99 16.99 0.00 3.60
18 19 3.414549 TTTGTCCGCTTGAGTCAAAAC 57.585 42.857 7.06 1.38 0.00 2.43
19 20 3.795150 GCATTTGTCCGCTTGAGTCAAAA 60.795 43.478 7.06 0.00 32.99 2.44
20 21 2.287547 GCATTTGTCCGCTTGAGTCAAA 60.288 45.455 7.06 0.00 33.61 2.69
21 22 1.266718 GCATTTGTCCGCTTGAGTCAA 59.733 47.619 5.25 5.25 0.00 3.18
22 23 0.874390 GCATTTGTCCGCTTGAGTCA 59.126 50.000 0.00 0.00 0.00 3.41
23 24 0.179215 CGCATTTGTCCGCTTGAGTC 60.179 55.000 0.00 0.00 0.00 3.36
24 25 1.868997 CGCATTTGTCCGCTTGAGT 59.131 52.632 0.00 0.00 0.00 3.41
25 26 1.512734 GCGCATTTGTCCGCTTGAG 60.513 57.895 0.30 0.00 46.14 3.02
26 27 2.560861 GCGCATTTGTCCGCTTGA 59.439 55.556 0.30 0.00 46.14 3.02
30 31 3.702334 GAGTCGCGCATTTGTCCGC 62.702 63.158 8.75 0.00 46.17 5.54
31 32 2.395690 GAGTCGCGCATTTGTCCG 59.604 61.111 8.75 0.00 0.00 4.79
32 33 1.369091 ATGGAGTCGCGCATTTGTCC 61.369 55.000 8.75 6.26 0.00 4.02
33 34 0.026803 GATGGAGTCGCGCATTTGTC 59.973 55.000 8.75 0.00 0.00 3.18
34 35 1.369091 GGATGGAGTCGCGCATTTGT 61.369 55.000 8.75 0.00 0.00 2.83
35 36 1.353103 GGATGGAGTCGCGCATTTG 59.647 57.895 8.75 0.00 0.00 2.32
36 37 1.819632 GGGATGGAGTCGCGCATTT 60.820 57.895 8.75 0.00 0.00 2.32
37 38 2.203070 GGGATGGAGTCGCGCATT 60.203 61.111 8.75 0.00 0.00 3.56
38 39 4.241555 GGGGATGGAGTCGCGCAT 62.242 66.667 8.75 0.00 40.50 4.73
40 41 3.969250 TTTGGGGATGGAGTCGCGC 62.969 63.158 0.00 0.00 40.50 6.86
41 42 0.748005 AATTTGGGGATGGAGTCGCG 60.748 55.000 0.00 0.00 40.50 5.87
42 43 1.025041 GAATTTGGGGATGGAGTCGC 58.975 55.000 0.00 0.00 38.96 5.19
43 44 1.299541 CGAATTTGGGGATGGAGTCG 58.700 55.000 0.00 0.00 0.00 4.18
44 45 1.680338 CCGAATTTGGGGATGGAGTC 58.320 55.000 3.45 0.00 0.00 3.36
45 46 0.395724 GCCGAATTTGGGGATGGAGT 60.396 55.000 13.87 0.00 0.00 3.85
46 47 1.109323 GGCCGAATTTGGGGATGGAG 61.109 60.000 13.87 0.00 0.00 3.86
47 48 1.076339 GGCCGAATTTGGGGATGGA 60.076 57.895 13.87 0.00 0.00 3.41
48 49 2.133641 GGGCCGAATTTGGGGATGG 61.134 63.158 13.87 0.00 0.00 3.51
49 50 2.489275 CGGGCCGAATTTGGGGATG 61.489 63.158 24.41 0.00 0.00 3.51
50 51 2.123897 CGGGCCGAATTTGGGGAT 60.124 61.111 24.41 0.00 0.00 3.85
51 52 2.716833 AAACGGGCCGAATTTGGGGA 62.717 55.000 35.78 0.00 0.00 4.81
52 53 2.279810 AAACGGGCCGAATTTGGGG 61.280 57.895 35.78 0.00 0.00 4.96
53 54 1.080161 CAAACGGGCCGAATTTGGG 60.080 57.895 35.78 8.87 31.12 4.12
54 55 1.080161 CCAAACGGGCCGAATTTGG 60.080 57.895 33.12 33.12 44.66 3.28
55 56 4.569341 CCAAACGGGCCGAATTTG 57.431 55.556 35.78 29.95 33.90 2.32
67 68 1.696832 GATCGAGCCTGACGCCAAAC 61.697 60.000 0.00 0.00 38.78 2.93
68 69 1.447838 GATCGAGCCTGACGCCAAA 60.448 57.895 0.00 0.00 38.78 3.28
69 70 2.184322 GATCGAGCCTGACGCCAA 59.816 61.111 0.00 0.00 38.78 4.52
70 71 3.838271 GGATCGAGCCTGACGCCA 61.838 66.667 13.71 0.00 38.78 5.69
71 72 2.650813 AATGGATCGAGCCTGACGCC 62.651 60.000 22.18 0.00 38.78 5.68
72 73 0.811616 AAATGGATCGAGCCTGACGC 60.812 55.000 22.18 0.00 37.98 5.19
73 74 1.212616 GAAATGGATCGAGCCTGACG 58.787 55.000 22.18 0.00 0.00 4.35
74 75 1.587547 GGAAATGGATCGAGCCTGAC 58.412 55.000 22.18 9.45 0.00 3.51
75 76 0.104855 CGGAAATGGATCGAGCCTGA 59.895 55.000 22.18 0.77 0.00 3.86
76 77 0.104855 TCGGAAATGGATCGAGCCTG 59.895 55.000 22.18 3.95 0.00 4.85
77 78 0.830648 TTCGGAAATGGATCGAGCCT 59.169 50.000 22.18 0.00 34.33 4.58
78 79 1.221414 CTTCGGAAATGGATCGAGCC 58.779 55.000 14.17 14.17 34.33 4.70
79 80 0.583917 GCTTCGGAAATGGATCGAGC 59.416 55.000 0.00 0.00 34.33 5.03
80 81 1.939974 TGCTTCGGAAATGGATCGAG 58.060 50.000 0.00 0.00 34.33 4.04
81 82 2.394930 TTGCTTCGGAAATGGATCGA 57.605 45.000 0.00 0.00 0.00 3.59
82 83 2.420022 AGTTTGCTTCGGAAATGGATCG 59.580 45.455 0.00 0.00 0.00 3.69
83 84 4.168760 CAAGTTTGCTTCGGAAATGGATC 58.831 43.478 0.00 0.00 31.49 3.36
84 85 4.178545 CAAGTTTGCTTCGGAAATGGAT 57.821 40.909 0.00 0.00 31.49 3.41
85 86 3.641437 CAAGTTTGCTTCGGAAATGGA 57.359 42.857 0.00 0.00 31.49 3.41
121 122 0.232303 GTCTGTTCGCTGTCCGTTTG 59.768 55.000 0.00 0.00 38.35 2.93
123 124 0.597637 CTGTCTGTTCGCTGTCCGTT 60.598 55.000 0.00 0.00 38.35 4.44
130 131 2.037136 GCATGGCTGTCTGTTCGCT 61.037 57.895 0.00 0.00 0.00 4.93
180 181 3.387225 GAAGTAGGTGGGCGGCCTC 62.387 68.421 29.87 25.24 37.54 4.70
181 182 3.400054 GAAGTAGGTGGGCGGCCT 61.400 66.667 29.87 11.86 40.00 5.19
200 201 1.199097 GTGTCTTTAATGTGGGCGGTG 59.801 52.381 0.00 0.00 0.00 4.94
204 205 1.401018 GCGTGTGTCTTTAATGTGGGC 60.401 52.381 0.00 0.00 0.00 5.36
249 250 3.234730 AAGGATCGGGCGGCTAGG 61.235 66.667 9.56 0.00 0.00 3.02
251 252 2.762459 ACAAGGATCGGGCGGCTA 60.762 61.111 9.56 0.00 0.00 3.93
256 257 1.545841 AAAAAGGACAAGGATCGGGC 58.454 50.000 0.00 0.00 0.00 6.13
266 267 9.949174 GATAACTTAAAACGGTTAAAAAGGACA 57.051 29.630 11.86 1.56 32.70 4.02
314 315 9.871238 ATCGACTGTGTATTCTAAAAACATACT 57.129 29.630 0.00 0.00 0.00 2.12
348 351 3.153130 TCTTGTCCGATTTGGCATTTGA 58.847 40.909 0.00 0.00 37.80 2.69
355 358 1.368641 TCGCATCTTGTCCGATTTGG 58.631 50.000 0.00 0.00 40.09 3.28
359 362 1.217585 CGCATCGCATCTTGTCCGAT 61.218 55.000 0.00 0.00 41.85 4.18
360 363 1.878069 CGCATCGCATCTTGTCCGA 60.878 57.895 0.00 0.00 35.29 4.55
363 366 2.325857 GCCGCATCGCATCTTGTC 59.674 61.111 0.00 0.00 0.00 3.18
393 396 0.895530 TGGTGTCTGCCTACTAGTGC 59.104 55.000 5.39 1.41 0.00 4.40
402 405 0.030235 GTTCGGTTTTGGTGTCTGCC 59.970 55.000 0.00 0.00 0.00 4.85
403 406 0.736053 TGTTCGGTTTTGGTGTCTGC 59.264 50.000 0.00 0.00 0.00 4.26
438 442 5.318349 CGAATTTTAACTATTTGCGTCCGT 58.682 37.500 0.00 0.00 0.00 4.69
439 443 4.726704 CCGAATTTTAACTATTTGCGTCCG 59.273 41.667 0.00 0.00 0.00 4.79
457 461 2.416547 CGAATGTCTGCTTTGTCCGAAT 59.583 45.455 0.00 0.00 0.00 3.34
461 465 3.300009 CAAACGAATGTCTGCTTTGTCC 58.700 45.455 0.00 0.00 0.00 4.02
468 472 2.417719 AGACTCCAAACGAATGTCTGC 58.582 47.619 0.00 0.00 36.74 4.26
470 474 3.195825 CCCTAGACTCCAAACGAATGTCT 59.804 47.826 0.00 0.00 40.52 3.41
472 476 2.904434 ACCCTAGACTCCAAACGAATGT 59.096 45.455 0.00 0.00 0.00 2.71
474 478 3.307480 CCAACCCTAGACTCCAAACGAAT 60.307 47.826 0.00 0.00 0.00 3.34
478 482 2.638363 ACTCCAACCCTAGACTCCAAAC 59.362 50.000 0.00 0.00 0.00 2.93
484 488 1.351350 GCCAAACTCCAACCCTAGACT 59.649 52.381 0.00 0.00 0.00 3.24
490 494 1.971695 CGAGGCCAAACTCCAACCC 60.972 63.158 5.01 0.00 33.93 4.11
491 495 1.971695 CCGAGGCCAAACTCCAACC 60.972 63.158 5.01 0.00 33.93 3.77
493 497 1.374947 CTCCGAGGCCAAACTCCAA 59.625 57.895 5.01 0.00 33.93 3.53
499 503 0.534203 GTTGTCACTCCGAGGCCAAA 60.534 55.000 5.01 0.00 0.00 3.28
544 548 6.293462 GGCAACTTTCTCAGGTACTAAAAGTG 60.293 42.308 0.00 0.00 41.06 3.16
575 579 1.966451 GGTGGACTTGCCTCGTTGG 60.966 63.158 0.00 0.00 37.63 3.77
578 582 2.915659 TCGGTGGACTTGCCTCGT 60.916 61.111 0.00 0.00 37.63 4.18
580 584 2.266055 CCTCGGTGGACTTGCCTC 59.734 66.667 0.00 0.00 38.35 4.70
582 586 3.842925 TTGCCTCGGTGGACTTGCC 62.843 63.158 0.00 0.00 38.35 4.52
625 813 2.230025 AGAGAGGACGTGTGAATGTGAG 59.770 50.000 0.00 0.00 0.00 3.51
640 828 1.229428 TTGTTTGCGCAGAAGAGAGG 58.771 50.000 11.31 0.00 0.00 3.69
642 830 2.013400 TGTTTGTTTGCGCAGAAGAGA 58.987 42.857 11.31 0.00 0.00 3.10
644 832 1.533756 GCTGTTTGTTTGCGCAGAAGA 60.534 47.619 11.31 4.08 0.00 2.87
728 947 1.517257 CTAACGGTCTCGCAGCTGG 60.517 63.158 17.12 5.82 40.63 4.85
739 958 4.142249 GGCATTTAATTTCCAGCTAACGGT 60.142 41.667 0.00 0.00 0.00 4.83
743 962 5.022787 ACCTGGCATTTAATTTCCAGCTAA 58.977 37.500 14.09 0.00 43.51 3.09
817 1036 3.984200 GACGTACGGGCTGCTGACC 62.984 68.421 21.06 5.14 38.25 4.02
845 1065 1.745115 ATGTGGTGACCAATCGGCG 60.745 57.895 5.57 0.00 34.18 6.46
858 1078 3.056821 TGGAAGAAGACGTAGACATGTGG 60.057 47.826 1.15 0.00 0.00 4.17
943 1171 1.891919 GACGTGTTTGCTGGGCTCA 60.892 57.895 0.00 0.00 0.00 4.26
948 1176 1.013596 TTGACTGACGTGTTTGCTGG 58.986 50.000 0.00 0.00 0.00 4.85
1425 3502 5.465051 TCGCAGCTAATAGATCAGATCAAC 58.535 41.667 13.14 0.00 0.00 3.18
1429 3506 7.403312 ACTATTCGCAGCTAATAGATCAGAT 57.597 36.000 25.96 6.56 38.61 2.90
1446 3523 6.085555 TGGGTCTATAAGCTGAACTATTCG 57.914 41.667 0.00 0.00 0.00 3.34
1458 3535 6.158023 ACGTAACCTTGATGGGTCTATAAG 57.842 41.667 0.00 0.00 38.87 1.73
1467 3546 7.861372 CAGTTAGTATCTACGTAACCTTGATGG 59.139 40.741 0.00 0.00 42.93 3.51
1471 3550 6.471519 GTGCAGTTAGTATCTACGTAACCTTG 59.528 42.308 0.00 0.00 0.00 3.61
1491 3570 6.154203 ACCGATCATCCTATATATGTGCAG 57.846 41.667 0.00 0.00 0.00 4.41
1517 3596 3.708631 ACAGGAAGATCAGATCAACCGAT 59.291 43.478 13.14 6.25 33.92 4.18
1518 3597 3.099905 ACAGGAAGATCAGATCAACCGA 58.900 45.455 13.14 0.00 33.92 4.69
1519 3598 3.118992 TGACAGGAAGATCAGATCAACCG 60.119 47.826 13.14 12.30 33.92 4.44
1520 3599 4.478206 TGACAGGAAGATCAGATCAACC 57.522 45.455 13.14 13.90 0.00 3.77
1521 3600 7.271511 ACTATTGACAGGAAGATCAGATCAAC 58.728 38.462 13.14 5.85 0.00 3.18
1522 3601 7.429374 ACTATTGACAGGAAGATCAGATCAA 57.571 36.000 13.14 0.00 0.00 2.57
1523 3602 7.124750 TGAACTATTGACAGGAAGATCAGATCA 59.875 37.037 13.14 0.00 0.00 2.92
1524 3603 7.495901 TGAACTATTGACAGGAAGATCAGATC 58.504 38.462 1.64 1.64 0.00 2.75
1525 3604 7.429374 TGAACTATTGACAGGAAGATCAGAT 57.571 36.000 0.00 0.00 0.00 2.90
1526 3605 6.857437 TGAACTATTGACAGGAAGATCAGA 57.143 37.500 0.00 0.00 0.00 3.27
1543 3622 9.470399 TCATGTGTCTAACTATAACCTGAACTA 57.530 33.333 0.00 0.00 0.00 2.24
1544 3623 8.362464 TCATGTGTCTAACTATAACCTGAACT 57.638 34.615 0.00 0.00 0.00 3.01
1545 3624 8.997621 TTCATGTGTCTAACTATAACCTGAAC 57.002 34.615 0.00 0.00 0.00 3.18
1546 3625 8.258007 CCTTCATGTGTCTAACTATAACCTGAA 58.742 37.037 0.00 0.00 0.00 3.02
1547 3626 7.632898 GCCTTCATGTGTCTAACTATAACCTGA 60.633 40.741 0.00 0.00 0.00 3.86
1548 3627 6.480320 GCCTTCATGTGTCTAACTATAACCTG 59.520 42.308 0.00 0.00 0.00 4.00
1549 3628 6.384305 AGCCTTCATGTGTCTAACTATAACCT 59.616 38.462 0.00 0.00 0.00 3.50
1550 3629 6.480320 CAGCCTTCATGTGTCTAACTATAACC 59.520 42.308 0.00 0.00 0.00 2.85
1551 3630 7.042335 ACAGCCTTCATGTGTCTAACTATAAC 58.958 38.462 0.00 0.00 0.00 1.89
1552 3631 7.182817 ACAGCCTTCATGTGTCTAACTATAA 57.817 36.000 0.00 0.00 0.00 0.98
1553 3632 6.791867 ACAGCCTTCATGTGTCTAACTATA 57.208 37.500 0.00 0.00 0.00 1.31
1554 3633 5.683876 ACAGCCTTCATGTGTCTAACTAT 57.316 39.130 0.00 0.00 0.00 2.12
1555 3634 5.715279 AGTACAGCCTTCATGTGTCTAACTA 59.285 40.000 0.00 0.00 32.02 2.24
1556 3635 4.528596 AGTACAGCCTTCATGTGTCTAACT 59.471 41.667 0.00 0.00 32.02 2.24
1557 3636 4.822026 AGTACAGCCTTCATGTGTCTAAC 58.178 43.478 0.00 0.00 32.02 2.34
1558 3637 6.599356 TTAGTACAGCCTTCATGTGTCTAA 57.401 37.500 0.00 0.00 31.99 2.10
1559 3638 6.599356 TTTAGTACAGCCTTCATGTGTCTA 57.401 37.500 0.00 0.00 32.02 2.59
1560 3639 5.483685 TTTAGTACAGCCTTCATGTGTCT 57.516 39.130 0.00 0.00 32.02 3.41
1561 3640 5.447818 GCATTTAGTACAGCCTTCATGTGTC 60.448 44.000 0.00 0.00 32.02 3.67
1562 3641 4.396166 GCATTTAGTACAGCCTTCATGTGT 59.604 41.667 0.00 0.00 32.02 3.72
1563 3642 4.395854 TGCATTTAGTACAGCCTTCATGTG 59.604 41.667 0.00 0.00 32.02 3.21
1564 3643 4.396166 GTGCATTTAGTACAGCCTTCATGT 59.604 41.667 0.00 0.00 32.52 3.21
1565 3644 4.395854 TGTGCATTTAGTACAGCCTTCATG 59.604 41.667 0.00 0.00 37.96 3.07
1566 3645 4.588899 TGTGCATTTAGTACAGCCTTCAT 58.411 39.130 0.00 0.00 37.96 2.57
1567 3646 4.014569 TGTGCATTTAGTACAGCCTTCA 57.985 40.909 0.00 0.00 37.96 3.02
1568 3647 5.277538 GCTATGTGCATTTAGTACAGCCTTC 60.278 44.000 0.00 0.00 46.12 3.46
1569 3648 4.576463 GCTATGTGCATTTAGTACAGCCTT 59.424 41.667 0.00 0.00 46.12 4.35
1570 3649 4.130118 GCTATGTGCATTTAGTACAGCCT 58.870 43.478 0.00 0.00 46.12 4.58
1571 3650 4.474226 GCTATGTGCATTTAGTACAGCC 57.526 45.455 0.00 0.00 46.12 4.85
1584 3663 4.034394 TCAAAGAATCATCGTGCTATGTGC 59.966 41.667 0.00 0.00 43.25 4.57
1585 3664 5.723492 TCAAAGAATCATCGTGCTATGTG 57.277 39.130 0.00 0.00 0.00 3.21
1586 3665 8.093307 AGATATCAAAGAATCATCGTGCTATGT 58.907 33.333 5.32 0.00 0.00 2.29
1587 3666 8.476657 AGATATCAAAGAATCATCGTGCTATG 57.523 34.615 5.32 0.00 0.00 2.23
1588 3667 9.149225 GAAGATATCAAAGAATCATCGTGCTAT 57.851 33.333 5.32 0.00 0.00 2.97
1589 3668 8.363390 AGAAGATATCAAAGAATCATCGTGCTA 58.637 33.333 5.32 0.00 0.00 3.49
1590 3669 7.215789 AGAAGATATCAAAGAATCATCGTGCT 58.784 34.615 5.32 0.00 0.00 4.40
1591 3670 7.418840 AGAAGATATCAAAGAATCATCGTGC 57.581 36.000 5.32 0.00 0.00 5.34
1592 3671 9.861138 GAAAGAAGATATCAAAGAATCATCGTG 57.139 33.333 5.32 0.00 0.00 4.35
1593 3672 9.829507 AGAAAGAAGATATCAAAGAATCATCGT 57.170 29.630 5.32 0.00 0.00 3.73
1645 3724 6.458478 CGGATGAAGTACTACAGAATCTTCGT 60.458 42.308 0.00 0.00 37.78 3.85
1646 3725 5.910166 CGGATGAAGTACTACAGAATCTTCG 59.090 44.000 0.00 0.00 37.78 3.79
1647 3726 6.797454 ACGGATGAAGTACTACAGAATCTTC 58.203 40.000 0.00 0.00 36.20 2.87
1648 3727 6.777213 ACGGATGAAGTACTACAGAATCTT 57.223 37.500 0.00 0.00 0.00 2.40
1649 3728 6.777213 AACGGATGAAGTACTACAGAATCT 57.223 37.500 0.00 0.00 0.00 2.40
1650 3729 7.033791 TGAAACGGATGAAGTACTACAGAATC 58.966 38.462 0.00 0.00 0.00 2.52
1651 3730 6.931838 TGAAACGGATGAAGTACTACAGAAT 58.068 36.000 0.00 0.00 0.00 2.40
1652 3731 6.335471 TGAAACGGATGAAGTACTACAGAA 57.665 37.500 0.00 0.00 0.00 3.02
1653 3732 5.970317 TGAAACGGATGAAGTACTACAGA 57.030 39.130 0.00 0.00 0.00 3.41
1654 3733 7.416154 TTTTGAAACGGATGAAGTACTACAG 57.584 36.000 0.00 0.00 0.00 2.74
1655 3734 7.972832 ATTTTGAAACGGATGAAGTACTACA 57.027 32.000 0.00 0.00 0.00 2.74
1656 3735 8.928733 TGTATTTTGAAACGGATGAAGTACTAC 58.071 33.333 0.00 0.00 0.00 2.73
1657 3736 9.146984 CTGTATTTTGAAACGGATGAAGTACTA 57.853 33.333 0.00 0.00 0.00 1.82
1659 3738 7.744715 CACTGTATTTTGAAACGGATGAAGTAC 59.255 37.037 0.00 0.00 0.00 2.73
1661 3740 6.668323 CACTGTATTTTGAAACGGATGAAGT 58.332 36.000 0.00 0.00 0.00 3.01
1662 3741 5.569059 GCACTGTATTTTGAAACGGATGAAG 59.431 40.000 0.00 0.00 0.00 3.02
1663 3742 5.240623 AGCACTGTATTTTGAAACGGATGAA 59.759 36.000 0.00 0.00 0.00 2.57
1664 3743 4.759693 AGCACTGTATTTTGAAACGGATGA 59.240 37.500 0.00 0.00 0.00 2.92
1665 3744 5.046910 AGCACTGTATTTTGAAACGGATG 57.953 39.130 0.00 0.00 0.00 3.51
1666 3745 5.705609 AAGCACTGTATTTTGAAACGGAT 57.294 34.783 0.00 0.00 0.00 4.18
1668 3747 5.519722 AGAAAGCACTGTATTTTGAAACGG 58.480 37.500 0.00 0.00 0.00 4.44
1669 3748 6.430451 AGAGAAAGCACTGTATTTTGAAACG 58.570 36.000 0.00 0.00 0.00 3.60
1670 3749 9.899226 AATAGAGAAAGCACTGTATTTTGAAAC 57.101 29.630 0.00 0.00 34.29 2.78
1673 3752 7.336931 GGGAATAGAGAAAGCACTGTATTTTGA 59.663 37.037 0.00 0.00 36.79 2.69
1674 3753 7.475840 GGGAATAGAGAAAGCACTGTATTTTG 58.524 38.462 0.00 0.00 36.79 2.44
1676 3755 5.817816 CGGGAATAGAGAAAGCACTGTATTT 59.182 40.000 0.00 0.00 36.79 1.40
1677 3756 5.104900 ACGGGAATAGAGAAAGCACTGTATT 60.105 40.000 0.00 0.00 38.46 1.89
1678 3757 4.406003 ACGGGAATAGAGAAAGCACTGTAT 59.594 41.667 0.00 0.00 0.00 2.29
1679 3758 3.767673 ACGGGAATAGAGAAAGCACTGTA 59.232 43.478 0.00 0.00 0.00 2.74
1680 3759 2.567615 ACGGGAATAGAGAAAGCACTGT 59.432 45.455 0.00 0.00 0.00 3.55
1681 3760 2.932614 CACGGGAATAGAGAAAGCACTG 59.067 50.000 0.00 0.00 0.00 3.66
1682 3761 2.678190 GCACGGGAATAGAGAAAGCACT 60.678 50.000 0.00 0.00 0.00 4.40
1683 3762 1.666189 GCACGGGAATAGAGAAAGCAC 59.334 52.381 0.00 0.00 0.00 4.40
1684 3763 1.555075 AGCACGGGAATAGAGAAAGCA 59.445 47.619 0.00 0.00 0.00 3.91
1685 3764 2.317530 AGCACGGGAATAGAGAAAGC 57.682 50.000 0.00 0.00 0.00 3.51
1686 3765 3.861840 TGAAGCACGGGAATAGAGAAAG 58.138 45.455 0.00 0.00 0.00 2.62
1687 3766 3.973206 TGAAGCACGGGAATAGAGAAA 57.027 42.857 0.00 0.00 0.00 2.52
1688 3767 3.260884 ACTTGAAGCACGGGAATAGAGAA 59.739 43.478 0.00 0.00 0.00 2.87
1689 3768 2.832129 ACTTGAAGCACGGGAATAGAGA 59.168 45.455 0.00 0.00 0.00 3.10
1690 3769 3.252974 ACTTGAAGCACGGGAATAGAG 57.747 47.619 0.00 0.00 0.00 2.43
1691 3770 3.695830 AACTTGAAGCACGGGAATAGA 57.304 42.857 0.00 0.00 0.00 1.98
1692 3771 5.391629 GGTTAAACTTGAAGCACGGGAATAG 60.392 44.000 0.00 0.00 0.00 1.73
1693 3772 4.456566 GGTTAAACTTGAAGCACGGGAATA 59.543 41.667 0.00 0.00 0.00 1.75
1694 3773 3.254903 GGTTAAACTTGAAGCACGGGAAT 59.745 43.478 0.00 0.00 0.00 3.01
1695 3774 2.619646 GGTTAAACTTGAAGCACGGGAA 59.380 45.455 0.00 0.00 0.00 3.97
1696 3775 2.223745 GGTTAAACTTGAAGCACGGGA 58.776 47.619 0.00 0.00 0.00 5.14
1697 3776 1.950909 TGGTTAAACTTGAAGCACGGG 59.049 47.619 0.00 0.00 29.71 5.28
1698 3777 3.915437 ATGGTTAAACTTGAAGCACGG 57.085 42.857 0.00 0.00 37.14 4.94
1699 3778 7.867445 AATTTATGGTTAAACTTGAAGCACG 57.133 32.000 0.00 0.00 37.14 5.34
1714 3793 9.320352 GGCGATTTTATTGGTTAAATTTATGGT 57.680 29.630 0.00 0.00 30.03 3.55
1715 3794 9.541143 AGGCGATTTTATTGGTTAAATTTATGG 57.459 29.630 0.00 0.00 30.03 2.74
1717 3796 9.040939 GCAGGCGATTTTATTGGTTAAATTTAT 57.959 29.630 0.00 0.00 30.03 1.40
1718 3797 7.221067 CGCAGGCGATTTTATTGGTTAAATTTA 59.779 33.333 8.15 0.00 42.83 1.40
1719 3798 6.035542 CGCAGGCGATTTTATTGGTTAAATTT 59.964 34.615 8.15 0.00 42.83 1.82
1720 3799 5.518487 CGCAGGCGATTTTATTGGTTAAATT 59.482 36.000 8.15 0.00 42.83 1.82
1721 3800 5.040635 CGCAGGCGATTTTATTGGTTAAAT 58.959 37.500 8.15 0.00 42.83 1.40
1722 3801 4.416620 CGCAGGCGATTTTATTGGTTAAA 58.583 39.130 8.15 0.00 42.83 1.52
1723 3802 3.181495 CCGCAGGCGATTTTATTGGTTAA 60.181 43.478 16.21 0.00 46.14 2.01
1724 3803 2.356382 CCGCAGGCGATTTTATTGGTTA 59.644 45.455 16.21 0.00 46.14 2.85
1725 3804 1.134175 CCGCAGGCGATTTTATTGGTT 59.866 47.619 16.21 0.00 46.14 3.67
1726 3805 0.738389 CCGCAGGCGATTTTATTGGT 59.262 50.000 16.21 0.00 46.14 3.67
1727 3806 3.549997 CCGCAGGCGATTTTATTGG 57.450 52.632 16.21 0.00 46.14 3.16
1740 3819 1.455383 AACTTTTGCTCCCACCGCAG 61.455 55.000 0.00 0.00 38.80 5.18
1741 3820 1.454847 AACTTTTGCTCCCACCGCA 60.455 52.632 0.00 0.00 35.22 5.69
1742 3821 1.007387 CAACTTTTGCTCCCACCGC 60.007 57.895 0.00 0.00 0.00 5.68
1743 3822 1.265905 GTACAACTTTTGCTCCCACCG 59.734 52.381 0.00 0.00 0.00 4.94
1744 3823 1.611977 GGTACAACTTTTGCTCCCACC 59.388 52.381 0.00 0.00 0.00 4.61
1745 3824 2.293399 CTGGTACAACTTTTGCTCCCAC 59.707 50.000 0.00 0.00 38.70 4.61
1746 3825 2.092103 ACTGGTACAACTTTTGCTCCCA 60.092 45.455 0.00 0.00 38.70 4.37
1747 3826 2.583143 ACTGGTACAACTTTTGCTCCC 58.417 47.619 0.00 0.00 38.70 4.30
1748 3827 5.761165 TTTACTGGTACAACTTTTGCTCC 57.239 39.130 0.00 0.00 38.70 4.70
1749 3828 6.577427 CGAATTTACTGGTACAACTTTTGCTC 59.423 38.462 0.00 0.00 38.70 4.26
1750 3829 6.038936 ACGAATTTACTGGTACAACTTTTGCT 59.961 34.615 0.00 0.00 38.70 3.91
1751 3830 6.203647 ACGAATTTACTGGTACAACTTTTGC 58.796 36.000 0.00 0.00 38.70 3.68
1752 3831 9.887406 AATACGAATTTACTGGTACAACTTTTG 57.113 29.630 0.00 0.00 38.70 2.44
1754 3833 9.275398 TGAATACGAATTTACTGGTACAACTTT 57.725 29.630 0.00 0.00 38.70 2.66
1755 3834 8.836268 TGAATACGAATTTACTGGTACAACTT 57.164 30.769 0.00 0.00 38.70 2.66
1756 3835 8.836268 TTGAATACGAATTTACTGGTACAACT 57.164 30.769 0.00 0.00 38.70 3.16
1757 3836 9.881529 TTTTGAATACGAATTTACTGGTACAAC 57.118 29.630 0.00 0.00 38.70 3.32
1758 3837 9.881529 GTTTTGAATACGAATTTACTGGTACAA 57.118 29.630 0.00 0.00 38.70 2.41
1759 3838 9.053840 TGTTTTGAATACGAATTTACTGGTACA 57.946 29.630 0.00 0.00 0.00 2.90
1760 3839 9.881529 TTGTTTTGAATACGAATTTACTGGTAC 57.118 29.630 0.00 0.00 0.00 3.34
1762 3841 8.626526 ACTTGTTTTGAATACGAATTTACTGGT 58.373 29.630 0.00 0.00 0.00 4.00
1763 3842 9.458374 AACTTGTTTTGAATACGAATTTACTGG 57.542 29.630 0.00 0.00 0.00 4.00
1805 3884 1.964373 GACTGCGGCGGGAGAAAAA 60.964 57.895 19.55 0.00 35.29 1.94
1806 3885 2.358247 GACTGCGGCGGGAGAAAA 60.358 61.111 19.55 0.00 35.29 2.29
1807 3886 3.589654 CTGACTGCGGCGGGAGAAA 62.590 63.158 19.55 5.98 35.29 2.52
1808 3887 4.069232 CTGACTGCGGCGGGAGAA 62.069 66.667 19.55 6.32 35.29 2.87
1810 3889 4.803426 GACTGACTGCGGCGGGAG 62.803 72.222 14.26 11.31 37.67 4.30
1812 3891 4.803426 GAGACTGACTGCGGCGGG 62.803 72.222 14.26 2.36 0.00 6.13
1814 3893 3.898627 AACGAGACTGACTGCGGCG 62.899 63.158 0.51 0.51 0.00 6.46
1815 3894 2.049063 AACGAGACTGACTGCGGC 60.049 61.111 0.00 0.00 0.00 6.53
1816 3895 1.734477 CCAACGAGACTGACTGCGG 60.734 63.158 0.00 0.00 0.00 5.69
1817 3896 0.597637 AACCAACGAGACTGACTGCG 60.598 55.000 0.00 0.00 0.00 5.18
1818 3897 2.433868 TAACCAACGAGACTGACTGC 57.566 50.000 0.00 0.00 0.00 4.40
1819 3898 5.924475 AATTTAACCAACGAGACTGACTG 57.076 39.130 0.00 0.00 0.00 3.51
1820 3899 7.876068 TCATAAATTTAACCAACGAGACTGACT 59.124 33.333 1.21 0.00 0.00 3.41
1821 3900 8.025243 TCATAAATTTAACCAACGAGACTGAC 57.975 34.615 1.21 0.00 0.00 3.51
1822 3901 8.786826 ATCATAAATTTAACCAACGAGACTGA 57.213 30.769 1.21 0.00 0.00 3.41
1823 3902 8.664798 TGATCATAAATTTAACCAACGAGACTG 58.335 33.333 1.21 0.00 0.00 3.51
1824 3903 8.786826 TGATCATAAATTTAACCAACGAGACT 57.213 30.769 1.21 0.00 0.00 3.24
1825 3904 9.834628 TTTGATCATAAATTTAACCAACGAGAC 57.165 29.630 1.21 0.00 0.00 3.36
1843 3922 7.962918 CGTTTCTCGAGGTTTAATTTTGATCAT 59.037 33.333 13.56 0.00 42.86 2.45
1844 3923 7.295201 CGTTTCTCGAGGTTTAATTTTGATCA 58.705 34.615 13.56 0.00 42.86 2.92
1845 3924 6.248629 GCGTTTCTCGAGGTTTAATTTTGATC 59.751 38.462 13.56 0.00 42.86 2.92
1846 3925 6.084277 GCGTTTCTCGAGGTTTAATTTTGAT 58.916 36.000 13.56 0.00 42.86 2.57
1847 3926 5.445845 GCGTTTCTCGAGGTTTAATTTTGA 58.554 37.500 13.56 0.00 42.86 2.69
1848 3927 4.317291 CGCGTTTCTCGAGGTTTAATTTTG 59.683 41.667 13.56 0.00 42.86 2.44
1849 3928 4.460505 CGCGTTTCTCGAGGTTTAATTTT 58.539 39.130 13.56 0.00 42.86 1.82
1850 3929 4.061570 CGCGTTTCTCGAGGTTTAATTT 57.938 40.909 13.56 0.00 42.86 1.82
1851 3930 3.717350 CGCGTTTCTCGAGGTTTAATT 57.283 42.857 13.56 0.00 42.86 1.40
1863 3942 3.659089 ATAGTGCGCCCGCGTTTCT 62.659 57.895 4.18 9.01 45.51 2.52
1864 3943 2.248274 AAATAGTGCGCCCGCGTTTC 62.248 55.000 4.18 2.02 45.51 2.78
1865 3944 1.858372 AAAATAGTGCGCCCGCGTTT 61.858 50.000 4.18 0.00 45.51 3.60
1866 3945 1.020333 TAAAATAGTGCGCCCGCGTT 61.020 50.000 4.18 1.35 45.51 4.84
1867 3946 1.020333 TTAAAATAGTGCGCCCGCGT 61.020 50.000 4.18 0.52 45.51 6.01
1868 3947 0.097325 TTTAAAATAGTGCGCCCGCG 59.903 50.000 4.18 4.36 45.51 6.46
1869 3948 2.265647 TTTTAAAATAGTGCGCCCGC 57.734 45.000 4.18 5.60 42.35 6.13
1870 3949 3.112580 CCATTTTAAAATAGTGCGCCCG 58.887 45.455 12.98 0.00 0.00 6.13
1871 3950 4.359706 CTCCATTTTAAAATAGTGCGCCC 58.640 43.478 12.98 0.00 0.00 6.13
1872 3951 4.359706 CCTCCATTTTAAAATAGTGCGCC 58.640 43.478 12.98 0.00 0.00 6.53
1873 3952 4.097286 TCCCTCCATTTTAAAATAGTGCGC 59.903 41.667 12.98 0.00 0.00 6.09
1874 3953 5.357032 ACTCCCTCCATTTTAAAATAGTGCG 59.643 40.000 12.98 1.20 0.00 5.34
1875 3954 6.775594 ACTCCCTCCATTTTAAAATAGTGC 57.224 37.500 12.98 0.00 0.00 4.40
1876 3955 9.627123 TCATACTCCCTCCATTTTAAAATAGTG 57.373 33.333 12.98 7.19 0.00 2.74
1877 3956 9.628500 GTCATACTCCCTCCATTTTAAAATAGT 57.372 33.333 12.98 13.30 0.00 2.12
1878 3957 9.067986 GGTCATACTCCCTCCATTTTAAAATAG 57.932 37.037 12.98 6.57 0.00 1.73
1879 3958 8.787818 AGGTCATACTCCCTCCATTTTAAAATA 58.212 33.333 12.98 0.00 0.00 1.40
1880 3959 7.652554 AGGTCATACTCCCTCCATTTTAAAAT 58.347 34.615 7.64 7.64 0.00 1.82
1881 3960 7.039722 AGGTCATACTCCCTCCATTTTAAAA 57.960 36.000 2.51 2.51 0.00 1.52
1882 3961 6.652205 AGGTCATACTCCCTCCATTTTAAA 57.348 37.500 0.00 0.00 0.00 1.52
1883 3962 6.674861 TGTAGGTCATACTCCCTCCATTTTAA 59.325 38.462 0.00 0.00 35.24 1.52
1884 3963 6.099269 GTGTAGGTCATACTCCCTCCATTTTA 59.901 42.308 0.00 0.00 35.24 1.52
1885 3964 5.036916 TGTAGGTCATACTCCCTCCATTTT 58.963 41.667 0.00 0.00 35.24 1.82
1886 3965 4.409247 GTGTAGGTCATACTCCCTCCATTT 59.591 45.833 0.00 0.00 35.24 2.32
1887 3966 3.967987 GTGTAGGTCATACTCCCTCCATT 59.032 47.826 0.00 0.00 35.24 3.16
1888 3967 3.207777 AGTGTAGGTCATACTCCCTCCAT 59.792 47.826 0.00 0.00 35.24 3.41
1889 3968 2.585900 AGTGTAGGTCATACTCCCTCCA 59.414 50.000 0.00 0.00 35.24 3.86
1890 3969 3.224269 GAGTGTAGGTCATACTCCCTCC 58.776 54.545 0.00 0.00 38.98 4.30
1891 3970 2.879646 CGAGTGTAGGTCATACTCCCTC 59.120 54.545 0.00 0.00 41.16 4.30
1892 3971 2.241685 ACGAGTGTAGGTCATACTCCCT 59.758 50.000 0.00 0.00 41.16 4.20
1893 3972 2.652590 ACGAGTGTAGGTCATACTCCC 58.347 52.381 0.00 0.00 41.16 4.30
1953 4032 2.550830 AAGGTTCAACTGATGCGTCT 57.449 45.000 7.58 0.00 0.00 4.18
1954 4033 3.300009 CAAAAGGTTCAACTGATGCGTC 58.700 45.455 0.00 0.00 0.00 5.19
1957 4036 3.375782 AGCAAAAGGTTCAACTGATGC 57.624 42.857 0.00 0.00 34.75 3.91
1960 4039 2.875933 CCGTAGCAAAAGGTTCAACTGA 59.124 45.455 0.00 0.00 0.00 3.41
1961 4040 2.604614 GCCGTAGCAAAAGGTTCAACTG 60.605 50.000 0.00 0.00 39.53 3.16
1963 4042 1.607148 AGCCGTAGCAAAAGGTTCAAC 59.393 47.619 0.00 0.00 43.56 3.18
1967 4046 5.243060 AGAAAAATAGCCGTAGCAAAAGGTT 59.757 36.000 0.00 0.00 43.56 3.50
1968 4047 4.765339 AGAAAAATAGCCGTAGCAAAAGGT 59.235 37.500 0.00 0.00 43.56 3.50
1969 4048 5.310720 AGAAAAATAGCCGTAGCAAAAGG 57.689 39.130 0.00 0.00 43.56 3.11
1971 4050 6.419413 CACAAAGAAAAATAGCCGTAGCAAAA 59.581 34.615 0.00 0.00 43.56 2.44
1973 4052 5.457140 CACAAAGAAAAATAGCCGTAGCAA 58.543 37.500 0.00 0.00 43.56 3.91
1974 4053 4.083003 CCACAAAGAAAAATAGCCGTAGCA 60.083 41.667 0.00 0.00 43.56 3.49
1976 4055 5.873179 TCCACAAAGAAAAATAGCCGTAG 57.127 39.130 0.00 0.00 0.00 3.51
1977 4056 6.636562 TTTCCACAAAGAAAAATAGCCGTA 57.363 33.333 0.00 0.00 32.90 4.02
1978 4057 5.523438 TTTCCACAAAGAAAAATAGCCGT 57.477 34.783 0.00 0.00 32.90 5.68
1980 4059 6.427853 AGCATTTTCCACAAAGAAAAATAGCC 59.572 34.615 3.79 0.00 45.94 3.93
1981 4060 7.425577 AGCATTTTCCACAAAGAAAAATAGC 57.574 32.000 3.79 8.21 45.94 2.97
1982 4061 8.284693 CCAAGCATTTTCCACAAAGAAAAATAG 58.715 33.333 3.79 0.05 45.94 1.73
1984 4308 6.459985 GCCAAGCATTTTCCACAAAGAAAAAT 60.460 34.615 3.79 0.00 45.94 1.82
2002 4326 2.829914 GCCCGATGATGCCAAGCA 60.830 61.111 0.00 0.00 44.86 3.91
2003 4327 3.957535 CGCCCGATGATGCCAAGC 61.958 66.667 0.00 0.00 0.00 4.01
2004 4328 3.282157 CCGCCCGATGATGCCAAG 61.282 66.667 0.00 0.00 0.00 3.61
2005 4329 3.118768 ATCCGCCCGATGATGCCAA 62.119 57.895 0.00 0.00 0.00 4.52
2006 4330 3.535629 GATCCGCCCGATGATGCCA 62.536 63.158 0.00 0.00 0.00 4.92
2008 4332 0.886490 AAAGATCCGCCCGATGATGC 60.886 55.000 0.00 0.00 0.00 3.91
2010 4334 0.250467 CCAAAGATCCGCCCGATGAT 60.250 55.000 0.00 0.00 0.00 2.45
2014 4338 4.830765 CGCCAAAGATCCGCCCGA 62.831 66.667 0.00 0.00 0.00 5.14
2021 4345 3.425938 CTGACGCGCGCCAAAGATC 62.426 63.158 32.58 18.59 0.00 2.75
2023 4347 4.961511 ACTGACGCGCGCCAAAGA 62.962 61.111 32.58 0.61 0.00 2.52
2024 4348 4.430423 GACTGACGCGCGCCAAAG 62.430 66.667 32.58 23.13 0.00 2.77
2035 4359 1.080434 GACTGTGGAGGCGACTGAC 60.080 63.158 0.00 0.00 44.43 3.51
2042 4366 2.674796 AATCTAACGACTGTGGAGGC 57.325 50.000 0.00 0.00 0.00 4.70
2043 4367 5.326200 AGTTAATCTAACGACTGTGGAGG 57.674 43.478 0.00 0.00 43.29 4.30
2044 4368 7.653767 AAAAGTTAATCTAACGACTGTGGAG 57.346 36.000 0.00 0.00 43.29 3.86
2047 4371 8.363755 CGACTAAAAGTTAATCTAACGACTGTG 58.636 37.037 0.00 0.00 43.29 3.66
2049 4373 8.363755 CACGACTAAAAGTTAATCTAACGACTG 58.636 37.037 0.00 0.00 43.29 3.51
2050 4374 7.061557 GCACGACTAAAAGTTAATCTAACGACT 59.938 37.037 0.00 0.00 43.29 4.18
2052 4376 6.032775 CGCACGACTAAAAGTTAATCTAACGA 59.967 38.462 0.00 0.00 43.29 3.85
2053 4377 6.166950 CGCACGACTAAAAGTTAATCTAACG 58.833 40.000 0.00 0.00 43.29 3.18
2054 4378 6.464311 CCGCACGACTAAAAGTTAATCTAAC 58.536 40.000 0.00 0.00 38.94 2.34
2056 4380 4.563976 GCCGCACGACTAAAAGTTAATCTA 59.436 41.667 0.00 0.00 0.00 1.98
2057 4381 3.370061 GCCGCACGACTAAAAGTTAATCT 59.630 43.478 0.00 0.00 0.00 2.40
2060 4384 2.221517 GTGCCGCACGACTAAAAGTTAA 59.778 45.455 7.96 0.00 0.00 2.01
2061 4385 1.794116 GTGCCGCACGACTAAAAGTTA 59.206 47.619 7.96 0.00 0.00 2.24
2062 4386 0.584876 GTGCCGCACGACTAAAAGTT 59.415 50.000 7.96 0.00 0.00 2.66
2063 4387 0.531090 TGTGCCGCACGACTAAAAGT 60.531 50.000 18.41 0.00 37.14 2.66
2065 4389 2.081725 TATGTGCCGCACGACTAAAA 57.918 45.000 18.41 0.00 37.14 1.52
2066 4390 1.996898 CTTATGTGCCGCACGACTAAA 59.003 47.619 18.41 7.20 37.14 1.85
2067 4391 1.202817 TCTTATGTGCCGCACGACTAA 59.797 47.619 18.41 13.83 37.14 2.24
2068 4392 0.812549 TCTTATGTGCCGCACGACTA 59.187 50.000 18.41 7.47 37.14 2.59
2069 4393 0.458543 CTCTTATGTGCCGCACGACT 60.459 55.000 18.41 8.42 37.14 4.18
2070 4394 1.999051 CTCTTATGTGCCGCACGAC 59.001 57.895 18.41 0.00 37.14 4.34
2071 4395 1.809619 GCTCTTATGTGCCGCACGA 60.810 57.895 18.41 8.60 37.14 4.35
2072 4396 1.431488 ATGCTCTTATGTGCCGCACG 61.431 55.000 18.41 4.50 37.14 5.34
2073 4397 1.581934 TATGCTCTTATGTGCCGCAC 58.418 50.000 16.93 16.93 32.94 5.34
2074 4398 2.416747 GATATGCTCTTATGTGCCGCA 58.583 47.619 0.00 0.00 34.83 5.69
2076 4400 3.044235 TGGATATGCTCTTATGTGCCG 57.956 47.619 0.00 0.00 32.27 5.69
2077 4401 4.136796 TGTTGGATATGCTCTTATGTGCC 58.863 43.478 0.00 0.00 32.27 5.01
2078 4402 5.049818 GTCTGTTGGATATGCTCTTATGTGC 60.050 44.000 0.00 0.00 0.00 4.57
2079 4403 5.176406 CGTCTGTTGGATATGCTCTTATGTG 59.824 44.000 0.00 0.00 0.00 3.21
2081 4405 4.151335 GCGTCTGTTGGATATGCTCTTATG 59.849 45.833 0.00 0.00 0.00 1.90
2082 4406 4.310769 GCGTCTGTTGGATATGCTCTTAT 58.689 43.478 0.00 0.00 0.00 1.73
2124 5007 1.000385 TGACGGTTCCGACGTTGTATT 60.000 47.619 18.28 0.00 45.68 1.89
2222 5106 3.342627 ACGCGCGCTGCAGTTTAA 61.343 55.556 32.58 0.00 46.97 1.52
2255 5145 7.701539 TTGTCTCTAAAATGCAACATATGGT 57.298 32.000 7.80 0.00 0.00 3.55
2382 5284 3.004315 TGGCTCGGATTTTGAACTTGTTC 59.996 43.478 6.56 6.56 0.00 3.18
2384 5286 2.582052 TGGCTCGGATTTTGAACTTGT 58.418 42.857 0.00 0.00 0.00 3.16
2401 5305 7.384660 TGTGAACTTTTATGTCATGAATTTGGC 59.615 33.333 0.00 0.00 0.00 4.52
2546 5471 2.621338 GTTCGAGCTCCACATGATGAA 58.379 47.619 8.47 0.00 0.00 2.57
2627 5555 1.563879 CCTGGTGACATGGGTGGAATA 59.436 52.381 0.00 0.00 41.51 1.75
2653 5585 2.609299 TCGTGGGAGGCATGGGAA 60.609 61.111 0.00 0.00 0.00 3.97
2668 5600 1.201855 GCATGAGTTTTGCGTCTCTCG 60.202 52.381 0.00 0.00 43.12 4.04
2765 5706 3.480133 GGAGCTACCATGGGCGGT 61.480 66.667 18.09 11.87 43.46 5.68
2805 5746 3.896133 CATGGGAGGCATGTGCGC 61.896 66.667 0.00 0.00 43.26 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.