Multiple sequence alignment - TraesCS5D01G307600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G307600 chr5D 100.000 2216 0 0 1 2216 404260393 404258178 0.000000e+00 4093.0
1 TraesCS5D01G307600 chr5D 87.042 409 42 5 941 1338 404253520 404253112 3.360000e-123 451.0
2 TraesCS5D01G307600 chr5D 86.087 345 31 7 592 929 404254085 404253751 2.710000e-94 355.0
3 TraesCS5D01G307600 chr5D 87.500 72 6 2 175 246 404240801 404240733 1.820000e-11 80.5
4 TraesCS5D01G307600 chr5D 83.333 84 7 4 656 736 404240538 404240459 1.100000e-08 71.3
5 TraesCS5D01G307600 chr5B 88.565 1408 95 25 622 1998 485570709 485569337 0.000000e+00 1648.0
6 TraesCS5D01G307600 chr5B 89.244 344 27 8 1489 1826 477360178 477359839 2.630000e-114 422.0
7 TraesCS5D01G307600 chr5B 87.679 349 32 4 1489 1826 293663086 293662738 1.590000e-106 396.0
8 TraesCS5D01G307600 chr5B 82.635 334 21 18 182 504 485571065 485570758 6.070000e-66 261.0
9 TraesCS5D01G307600 chr5B 79.060 234 28 14 656 884 485449051 485448834 8.250000e-30 141.0
10 TraesCS5D01G307600 chr5A 88.053 837 61 17 576 1379 509977850 509978680 0.000000e+00 955.0
11 TraesCS5D01G307600 chr5A 90.940 585 38 7 1 576 509977190 509977768 0.000000e+00 773.0
12 TraesCS5D01G307600 chr5A 82.270 141 19 5 1818 1957 524311878 524312013 1.390000e-22 117.0
13 TraesCS5D01G307600 chr5A 82.716 81 10 2 656 736 509985194 509985270 3.950000e-08 69.4
14 TraesCS5D01G307600 chr5A 90.566 53 4 1 1368 1419 652000414 652000466 3.950000e-08 69.4
15 TraesCS5D01G307600 chr6A 89.118 340 28 5 1487 1825 484102 483771 4.400000e-112 414.0
16 TraesCS5D01G307600 chr2A 88.372 344 32 6 1489 1826 778289191 778289532 7.370000e-110 407.0
17 TraesCS5D01G307600 chr2A 86.161 224 26 4 1995 2216 768847793 768847573 1.020000e-58 237.0
18 TraesCS5D01G307600 chr2A 90.411 146 11 3 1818 1962 639698683 639698826 2.900000e-44 189.0
19 TraesCS5D01G307600 chr2A 88.194 144 14 3 1820 1962 778290483 778290624 3.780000e-38 169.0
20 TraesCS5D01G307600 chrUn 88.338 343 31 6 1489 1826 88118676 88119014 9.530000e-109 403.0
21 TraesCS5D01G307600 chrUn 88.338 343 31 6 1489 1826 88973952 88974290 9.530000e-109 403.0
22 TraesCS5D01G307600 chrUn 88.426 216 22 3 1992 2207 34444866 34444654 7.850000e-65 257.0
23 TraesCS5D01G307600 chrUn 95.745 47 1 1 532 577 291893897 291893943 8.490000e-10 75.0
24 TraesCS5D01G307600 chrUn 95.745 47 1 1 532 577 340422136 340422182 8.490000e-10 75.0
25 TraesCS5D01G307600 chr7B 88.235 340 32 7 1486 1824 451146221 451145889 1.230000e-107 399.0
26 TraesCS5D01G307600 chr7B 93.833 227 11 3 1990 2216 732713686 732713909 2.730000e-89 339.0
27 TraesCS5D01G307600 chr7B 86.222 225 24 3 1999 2216 616834144 616834368 1.020000e-58 237.0
28 TraesCS5D01G307600 chr7B 97.778 45 0 1 1378 1422 608302027 608301984 2.360000e-10 76.8
29 TraesCS5D01G307600 chr7B 92.857 42 3 0 1378 1419 392666780 392666821 6.610000e-06 62.1
30 TraesCS5D01G307600 chr1B 87.791 344 32 7 1489 1826 605657713 605658052 5.740000e-106 394.0
31 TraesCS5D01G307600 chr1B 93.023 43 3 0 1375 1417 470934672 470934630 1.840000e-06 63.9
32 TraesCS5D01G307600 chr3D 97.727 220 5 0 1997 2216 48319355 48319574 1.610000e-101 379.0
33 TraesCS5D01G307600 chr3D 90.714 140 13 0 1818 1957 610942121 610941982 1.040000e-43 187.0
34 TraesCS5D01G307600 chr3D 81.595 163 26 4 1817 1976 520291384 520291545 4.960000e-27 132.0
35 TraesCS5D01G307600 chr7D 96.413 223 7 1 1995 2216 40337231 40337453 1.250000e-97 366.0
36 TraesCS5D01G307600 chr7D 100.000 44 0 0 532 575 230980432 230980389 5.070000e-12 82.4
37 TraesCS5D01G307600 chr4D 96.018 226 8 1 1991 2216 478502947 478502723 1.250000e-97 366.0
38 TraesCS5D01G307600 chr4D 93.182 44 3 0 1375 1418 50068410 50068453 5.110000e-07 65.8
39 TraesCS5D01G307600 chr1D 95.455 220 9 1 1997 2216 485541167 485541385 1.260000e-92 350.0
40 TraesCS5D01G307600 chr1D 84.211 152 20 3 1817 1967 453426257 453426109 6.380000e-31 145.0
41 TraesCS5D01G307600 chr7A 91.469 211 17 1 1998 2207 18091922 18092132 2.780000e-74 289.0
42 TraesCS5D01G307600 chr3B 82.394 142 21 4 1817 1957 422553868 422553730 1.070000e-23 121.0
43 TraesCS5D01G307600 chr3B 100.000 44 0 0 532 575 144774658 144774701 5.070000e-12 82.4
44 TraesCS5D01G307600 chr4A 81.208 149 19 7 1818 1962 133837812 133837955 6.470000e-21 111.0
45 TraesCS5D01G307600 chr4A 95.833 48 1 1 532 579 743691160 743691206 2.360000e-10 76.8
46 TraesCS5D01G307600 chr2B 95.745 47 1 1 532 577 773082641 773082687 8.490000e-10 75.0
47 TraesCS5D01G307600 chr2B 87.692 65 5 3 532 595 157814810 157814872 3.050000e-09 73.1
48 TraesCS5D01G307600 chr2B 95.556 45 2 0 1378 1422 454012459 454012415 3.050000e-09 73.1
49 TraesCS5D01G307600 chr2B 90.566 53 5 0 1434 1486 397601136 397601188 1.100000e-08 71.3
50 TraesCS5D01G307600 chr2B 91.304 46 4 0 1373 1418 86681054 86681099 1.840000e-06 63.9
51 TraesCS5D01G307600 chr2D 95.556 45 2 0 1378 1422 383553884 383553840 3.050000e-09 73.1
52 TraesCS5D01G307600 chr6D 95.455 44 2 0 532 575 7452176 7452133 1.100000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G307600 chr5D 404258178 404260393 2215 True 4093.0 4093 100.0000 1 2216 1 chr5D.!!$R1 2215
1 TraesCS5D01G307600 chr5D 404253112 404254085 973 True 403.0 451 86.5645 592 1338 2 chr5D.!!$R3 746
2 TraesCS5D01G307600 chr5B 485569337 485571065 1728 True 954.5 1648 85.6000 182 1998 2 chr5B.!!$R4 1816
3 TraesCS5D01G307600 chr5A 509977190 509978680 1490 False 864.0 955 89.4965 1 1379 2 chr5A.!!$F4 1378
4 TraesCS5D01G307600 chr2A 778289191 778290624 1433 False 288.0 407 88.2830 1489 1962 2 chr2A.!!$F2 473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1093 0.179092 GGCGCGACCTAACACCTATT 60.179 55.0 12.1 0.0 34.51 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 3538 0.034337 TCTAGTGGTTGACAACGGGC 59.966 55.0 12.07 5.01 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.224594 TCTTGAGAGCTGAGATCAATGGTT 59.775 41.667 0.00 0.00 32.82 3.67
57 58 7.510343 TGAGATCAATGGTTGTCCTATATCTCA 59.490 37.037 0.00 0.00 40.09 3.27
76 77 4.405680 TCTCATACATCCATGACCGAAACT 59.594 41.667 0.00 0.00 31.67 2.66
95 96 8.351461 CCGAAACTAAACTTATAGCTAGCTACT 58.649 37.037 26.41 16.96 0.00 2.57
96 97 9.171701 CGAAACTAAACTTATAGCTAGCTACTG 57.828 37.037 26.41 19.59 0.00 2.74
103 104 8.466617 AACTTATAGCTAGCTACTGTATGTGT 57.533 34.615 26.41 10.01 0.00 3.72
108 109 5.837437 AGCTAGCTACTGTATGTGTTCATC 58.163 41.667 17.69 0.00 35.70 2.92
110 111 4.720649 AGCTACTGTATGTGTTCATCGT 57.279 40.909 0.00 0.00 35.70 3.73
111 112 4.424626 AGCTACTGTATGTGTTCATCGTG 58.575 43.478 0.00 0.00 35.70 4.35
126 127 9.051027 GTGTTCATCGTGTTATGTATCTTTTTG 57.949 33.333 0.00 0.00 0.00 2.44
142 143 9.860898 GTATCTTTTTGATGCTCCATTTTAAGT 57.139 29.630 0.00 0.00 36.65 2.24
144 145 7.083858 TCTTTTTGATGCTCCATTTTAAGTCG 58.916 34.615 0.00 0.00 0.00 4.18
149 150 7.857734 TGATGCTCCATTTTAAGTCGATAAA 57.142 32.000 0.00 0.00 0.00 1.40
150 151 8.450578 TGATGCTCCATTTTAAGTCGATAAAT 57.549 30.769 0.00 0.00 0.00 1.40
164 165 7.057149 AGTCGATAAATAACACCTTTTGTCG 57.943 36.000 7.83 7.83 43.43 4.35
165 166 6.091713 AGTCGATAAATAACACCTTTTGTCGG 59.908 38.462 12.36 0.00 42.78 4.79
285 293 2.334838 CCGGAACTTTCGTTGTCCTAG 58.665 52.381 0.00 0.00 32.39 3.02
291 299 3.391049 ACTTTCGTTGTCCTAGTTGAGC 58.609 45.455 0.00 0.00 0.00 4.26
298 306 1.121378 GTCCTAGTTGAGCTACCCCC 58.879 60.000 0.00 0.00 0.00 5.40
364 375 2.600475 CGTACGTGCGGCCACTTTT 61.600 57.895 18.81 0.00 39.86 2.27
373 395 1.301953 GGCCACTTTTACGGTCGGT 60.302 57.895 0.00 0.00 0.00 4.69
388 410 4.926207 GGTACCGATGCCGTCTTT 57.074 55.556 0.00 0.00 0.00 2.52
447 469 1.581447 CCCTTCTTCGCAAGCAACC 59.419 57.895 0.00 0.00 37.18 3.77
460 482 1.435577 AGCAACCGACCGAACATAAC 58.564 50.000 0.00 0.00 0.00 1.89
476 498 3.804325 ACATAACTAGTGCGATGTCATGC 59.196 43.478 10.90 0.00 0.00 4.06
490 512 4.365111 ATGCTTGCTCGCCCCCAA 62.365 61.111 0.00 0.00 0.00 4.12
523 545 5.946942 AGCTGACTTGATAAGAATCTCCA 57.053 39.130 0.00 0.00 32.93 3.86
558 580 9.270640 CCCTTTGAATTTTGACACATGAAATAA 57.729 29.630 0.00 0.00 0.00 1.40
564 586 3.116063 TGACACATGAAATAAAGCGCG 57.884 42.857 0.00 0.00 0.00 6.86
581 687 1.512926 GCGGTGTTCTTCTCACACAT 58.487 50.000 5.61 0.00 45.49 3.21
583 689 3.064207 GCGGTGTTCTTCTCACACATAA 58.936 45.455 5.61 0.00 45.49 1.90
585 691 4.377431 GCGGTGTTCTTCTCACACATAAAG 60.377 45.833 5.61 0.00 45.49 1.85
588 694 6.018262 CGGTGTTCTTCTCACACATAAAGAAA 60.018 38.462 5.61 0.00 45.49 2.52
590 696 8.188139 GGTGTTCTTCTCACACATAAAGAAAAA 58.812 33.333 5.61 0.00 45.49 1.94
596 702 4.854399 TCACACATAAAGAAAAACTGCGG 58.146 39.130 0.00 0.00 0.00 5.69
606 712 1.823169 AAAACTGCGGGACTAGCCGA 61.823 55.000 12.40 0.00 37.63 5.54
616 722 1.145803 GACTAGCCGAAAACAGCGTT 58.854 50.000 0.00 0.00 0.00 4.84
697 834 3.414700 CAGCAGCACGTTCGGTCC 61.415 66.667 0.00 0.00 0.00 4.46
699 836 4.681978 GCAGCACGTTCGGTCCCT 62.682 66.667 0.00 0.00 0.00 4.20
700 837 2.967397 CAGCACGTTCGGTCCCTA 59.033 61.111 0.00 0.00 0.00 3.53
701 838 1.445582 CAGCACGTTCGGTCCCTAC 60.446 63.158 0.00 0.00 0.00 3.18
702 839 1.904865 AGCACGTTCGGTCCCTACA 60.905 57.895 0.00 0.00 0.00 2.74
703 840 1.735559 GCACGTTCGGTCCCTACAC 60.736 63.158 0.00 0.00 0.00 2.90
704 841 1.661480 CACGTTCGGTCCCTACACA 59.339 57.895 0.00 0.00 0.00 3.72
789 926 3.655777 TCTCCCTTTCCACCTTACACATT 59.344 43.478 0.00 0.00 0.00 2.71
796 933 2.901192 TCCACCTTACACATTCTCCGAA 59.099 45.455 0.00 0.00 0.00 4.30
805 946 2.414481 CACATTCTCCGAACTCAGCAAG 59.586 50.000 0.00 0.00 0.00 4.01
809 950 0.320247 CTCCGAACTCAGCAAGCACT 60.320 55.000 0.00 0.00 0.00 4.40
870 1021 6.442564 TCACCACACCACCTCTATAAATACTT 59.557 38.462 0.00 0.00 0.00 2.24
886 1037 2.357327 ACTTACGCTCGCACACAATA 57.643 45.000 0.00 0.00 0.00 1.90
887 1038 1.990563 ACTTACGCTCGCACACAATAC 59.009 47.619 0.00 0.00 0.00 1.89
889 1040 0.244178 TACGCTCGCACACAATACCA 59.756 50.000 0.00 0.00 0.00 3.25
895 1059 3.554524 CTCGCACACAATACCAAAACAG 58.445 45.455 0.00 0.00 0.00 3.16
900 1064 3.251245 CACACAATACCAAAACAGCCGTA 59.749 43.478 0.00 0.00 0.00 4.02
926 1090 3.296709 CTGGCGCGACCTAACACCT 62.297 63.158 10.82 0.00 40.22 4.00
929 1093 0.179092 GGCGCGACCTAACACCTATT 60.179 55.000 12.10 0.00 34.51 1.73
930 1094 0.928229 GCGCGACCTAACACCTATTG 59.072 55.000 12.10 0.00 0.00 1.90
933 1097 3.772932 CGCGACCTAACACCTATTGTAA 58.227 45.455 0.00 0.00 37.51 2.41
935 1099 4.443394 CGCGACCTAACACCTATTGTAATC 59.557 45.833 0.00 0.00 37.51 1.75
985 1372 2.240160 ACACCAACACCACCTTCAGTTA 59.760 45.455 0.00 0.00 0.00 2.24
988 1375 2.819608 CCAACACCACCTTCAGTTATGG 59.180 50.000 0.00 0.00 38.26 2.74
997 1384 3.309296 CCTTCAGTTATGGGGAGCTCTA 58.691 50.000 14.64 0.76 0.00 2.43
1011 1398 1.274728 AGCTCTATGATGGCATCGTCC 59.725 52.381 24.68 12.16 35.94 4.79
1179 1566 3.138930 GATGCTCACGGCGAGGCTA 62.139 63.158 16.62 6.07 45.43 3.93
1222 1620 2.652095 GCCGGCCACTAGGTACACA 61.652 63.158 18.11 0.00 37.19 3.72
1227 1625 0.108945 GCCACTAGGTACACACGGAC 60.109 60.000 0.00 0.00 37.19 4.79
1230 1628 0.036732 ACTAGGTACACACGGACGGA 59.963 55.000 0.00 0.00 0.00 4.69
1274 1678 2.345876 TCAACGTAGACATGTGCATGG 58.654 47.619 1.15 1.41 42.91 3.66
1280 1684 2.343484 AGACATGTGCATGGAGATGG 57.657 50.000 24.83 9.93 42.91 3.51
1379 1790 9.968743 CATTTTCTCGTTGGAAGTTATTACTAC 57.031 33.333 0.00 0.00 33.17 2.73
1381 1792 8.976986 TTTCTCGTTGGAAGTTATTACTACTC 57.023 34.615 0.00 0.00 33.17 2.59
1385 1796 6.096001 TCGTTGGAAGTTATTACTACTCCCTC 59.904 42.308 1.18 0.00 32.47 4.30
1386 1797 6.580788 GTTGGAAGTTATTACTACTCCCTCC 58.419 44.000 1.18 0.00 32.47 4.30
1405 1816 5.394802 CCTCCGTCTCACAATATAAGATCG 58.605 45.833 0.00 0.00 0.00 3.69
1410 1821 7.434307 TCCGTCTCACAATATAAGATCGTTTTC 59.566 37.037 0.00 0.00 0.00 2.29
1573 1986 1.271054 ACATCCGGCCTCTGCATAATC 60.271 52.381 0.00 0.00 40.13 1.75
1579 1992 2.709213 GGCCTCTGCATAATCAGGATC 58.291 52.381 0.00 0.00 40.13 3.36
1584 1997 4.263374 CCTCTGCATAATCAGGATCCACAT 60.263 45.833 15.82 1.62 34.91 3.21
1601 2014 1.133637 ACATAGCCAACCCAACACACA 60.134 47.619 0.00 0.00 0.00 3.72
1602 2015 2.170166 CATAGCCAACCCAACACACAT 58.830 47.619 0.00 0.00 0.00 3.21
1612 2025 2.792116 CCCAACACACATACGCAAAAAC 59.208 45.455 0.00 0.00 0.00 2.43
1614 2027 3.241784 CCAACACACATACGCAAAAACAC 59.758 43.478 0.00 0.00 0.00 3.32
1616 2029 2.040524 CACACATACGCAAAAACACGG 58.959 47.619 0.00 0.00 0.00 4.94
1716 2135 4.220382 TCCAAAGCGACCAAATCATCAATT 59.780 37.500 0.00 0.00 0.00 2.32
1979 3359 2.045242 TCAGGTCGGAGGAGGTCG 60.045 66.667 0.00 0.00 0.00 4.79
2015 3395 9.537192 TTAATAATAGAGTCAATTACACCGGTG 57.463 33.333 32.83 32.83 0.00 4.94
2016 3396 2.762535 AGAGTCAATTACACCGGTGG 57.237 50.000 36.47 19.50 34.19 4.61
2017 3397 1.975680 AGAGTCAATTACACCGGTGGT 59.024 47.619 36.47 23.92 35.62 4.16
2028 3408 2.396590 ACCGGTGGTGCTATAACTTG 57.603 50.000 6.12 0.00 32.98 3.16
2029 3409 1.065709 ACCGGTGGTGCTATAACTTGG 60.066 52.381 6.12 0.00 32.98 3.61
2030 3410 1.014352 CGGTGGTGCTATAACTTGGC 58.986 55.000 0.00 0.00 0.00 4.52
2031 3411 1.014352 GGTGGTGCTATAACTTGGCG 58.986 55.000 0.00 0.00 0.00 5.69
2032 3412 0.377203 GTGGTGCTATAACTTGGCGC 59.623 55.000 0.00 0.00 35.98 6.53
2033 3413 0.035915 TGGTGCTATAACTTGGCGCA 60.036 50.000 10.83 0.00 38.10 6.09
2034 3414 1.091537 GGTGCTATAACTTGGCGCAA 58.908 50.000 10.83 0.00 38.10 4.85
2035 3415 1.470890 GGTGCTATAACTTGGCGCAAA 59.529 47.619 10.83 2.19 38.10 3.68
2036 3416 2.515912 GTGCTATAACTTGGCGCAAAC 58.484 47.619 10.83 0.00 36.61 2.93
2037 3417 1.129624 TGCTATAACTTGGCGCAAACG 59.870 47.619 10.83 0.61 44.07 3.60
2038 3418 1.531058 GCTATAACTTGGCGCAAACGG 60.531 52.381 10.83 0.00 40.57 4.44
2039 3419 2.004017 CTATAACTTGGCGCAAACGGA 58.996 47.619 10.83 0.00 40.57 4.69
2040 3420 0.519961 ATAACTTGGCGCAAACGGAC 59.480 50.000 10.83 0.00 40.57 4.79
2041 3421 0.814410 TAACTTGGCGCAAACGGACA 60.814 50.000 10.83 0.00 40.57 4.02
2042 3422 2.058829 AACTTGGCGCAAACGGACAG 62.059 55.000 10.83 0.00 40.57 3.51
2043 3423 2.515057 TTGGCGCAAACGGACAGT 60.515 55.556 10.83 0.00 40.57 3.55
2044 3424 2.058829 CTTGGCGCAAACGGACAGTT 62.059 55.000 10.83 0.00 46.76 3.16
2051 3431 4.977393 AACGGACAGTTTGGTGCT 57.023 50.000 0.00 0.00 40.88 4.40
2053 3433 1.878953 AACGGACAGTTTGGTGCTAG 58.121 50.000 0.00 0.00 40.88 3.42
2054 3434 1.045407 ACGGACAGTTTGGTGCTAGA 58.955 50.000 0.00 0.00 0.00 2.43
2055 3435 1.414919 ACGGACAGTTTGGTGCTAGAA 59.585 47.619 0.00 0.00 0.00 2.10
2056 3436 2.069273 CGGACAGTTTGGTGCTAGAAG 58.931 52.381 0.00 0.00 0.00 2.85
2057 3437 2.548067 CGGACAGTTTGGTGCTAGAAGT 60.548 50.000 0.00 0.00 0.00 3.01
2058 3438 3.477530 GGACAGTTTGGTGCTAGAAGTT 58.522 45.455 0.00 0.00 0.00 2.66
2059 3439 3.251004 GGACAGTTTGGTGCTAGAAGTTG 59.749 47.826 0.00 0.00 0.00 3.16
2060 3440 3.877508 GACAGTTTGGTGCTAGAAGTTGT 59.122 43.478 0.00 0.00 0.00 3.32
2061 3441 3.627577 ACAGTTTGGTGCTAGAAGTTGTG 59.372 43.478 0.00 0.00 0.00 3.33
2062 3442 3.003689 CAGTTTGGTGCTAGAAGTTGTGG 59.996 47.826 0.00 0.00 0.00 4.17
2063 3443 1.604604 TTGGTGCTAGAAGTTGTGGC 58.395 50.000 1.01 1.01 0.00 5.01
2064 3444 0.472044 TGGTGCTAGAAGTTGTGGCA 59.528 50.000 6.98 6.98 0.00 4.92
2065 3445 1.073763 TGGTGCTAGAAGTTGTGGCAT 59.926 47.619 14.11 0.00 35.37 4.40
2066 3446 2.304470 TGGTGCTAGAAGTTGTGGCATA 59.696 45.455 14.11 4.52 35.37 3.14
2067 3447 2.678336 GGTGCTAGAAGTTGTGGCATAC 59.322 50.000 14.11 7.20 35.37 2.39
2068 3448 3.334691 GTGCTAGAAGTTGTGGCATACA 58.665 45.455 14.11 0.00 37.56 2.29
2069 3449 3.941483 GTGCTAGAAGTTGTGGCATACAT 59.059 43.478 14.11 0.00 39.48 2.29
2070 3450 4.396166 GTGCTAGAAGTTGTGGCATACATT 59.604 41.667 14.11 0.00 39.48 2.71
2071 3451 5.584649 GTGCTAGAAGTTGTGGCATACATTA 59.415 40.000 14.11 0.00 39.48 1.90
2072 3452 6.093495 GTGCTAGAAGTTGTGGCATACATTAA 59.907 38.462 14.11 0.00 39.48 1.40
2073 3453 6.657117 TGCTAGAAGTTGTGGCATACATTAAA 59.343 34.615 6.98 0.00 39.48 1.52
2074 3454 7.148255 TGCTAGAAGTTGTGGCATACATTAAAG 60.148 37.037 6.98 0.00 39.48 1.85
2075 3455 7.148239 GCTAGAAGTTGTGGCATACATTAAAGT 60.148 37.037 3.32 0.00 39.48 2.66
2076 3456 6.913170 AGAAGTTGTGGCATACATTAAAGTG 58.087 36.000 0.00 0.00 39.48 3.16
2077 3457 6.714810 AGAAGTTGTGGCATACATTAAAGTGA 59.285 34.615 0.00 0.00 39.48 3.41
2078 3458 7.394359 AGAAGTTGTGGCATACATTAAAGTGAT 59.606 33.333 0.00 0.00 39.48 3.06
2079 3459 6.855836 AGTTGTGGCATACATTAAAGTGATG 58.144 36.000 0.00 0.00 39.48 3.07
2080 3460 5.247507 TGTGGCATACATTAAAGTGATGC 57.752 39.130 12.69 12.69 41.73 3.91
2081 3461 4.704057 TGTGGCATACATTAAAGTGATGCA 59.296 37.500 18.25 0.00 43.74 3.96
2082 3462 5.184671 TGTGGCATACATTAAAGTGATGCAA 59.815 36.000 18.25 10.46 43.74 4.08
2083 3463 6.098679 GTGGCATACATTAAAGTGATGCAAA 58.901 36.000 18.25 9.48 43.74 3.68
2084 3464 6.589523 GTGGCATACATTAAAGTGATGCAAAA 59.410 34.615 18.25 7.96 43.74 2.44
2085 3465 7.117523 GTGGCATACATTAAAGTGATGCAAAAA 59.882 33.333 18.25 6.46 43.74 1.94
2086 3466 7.117523 TGGCATACATTAAAGTGATGCAAAAAC 59.882 33.333 18.25 0.00 43.74 2.43
2087 3467 7.331687 GGCATACATTAAAGTGATGCAAAAACT 59.668 33.333 18.25 0.00 43.74 2.66
2088 3468 8.711457 GCATACATTAAAGTGATGCAAAAACTT 58.289 29.630 14.67 6.29 41.98 2.66
2090 3470 7.481275 ACATTAAAGTGATGCAAAAACTTGG 57.519 32.000 11.43 6.20 34.46 3.61
2091 3471 5.982465 TTAAAGTGATGCAAAAACTTGGC 57.018 34.783 11.43 0.00 34.46 4.52
2092 3472 3.825143 AAGTGATGCAAAAACTTGGCT 57.175 38.095 10.27 0.00 33.01 4.75
2093 3473 3.825143 AGTGATGCAAAAACTTGGCTT 57.175 38.095 0.00 0.00 0.00 4.35
2094 3474 4.141233 AGTGATGCAAAAACTTGGCTTT 57.859 36.364 0.00 0.00 0.00 3.51
2095 3475 3.872771 AGTGATGCAAAAACTTGGCTTTG 59.127 39.130 0.00 0.00 35.95 2.77
2096 3476 3.870419 GTGATGCAAAAACTTGGCTTTGA 59.130 39.130 0.00 0.00 35.03 2.69
2097 3477 3.870419 TGATGCAAAAACTTGGCTTTGAC 59.130 39.130 0.00 0.00 35.03 3.18
2098 3478 2.266554 TGCAAAAACTTGGCTTTGACG 58.733 42.857 0.85 0.00 35.03 4.35
2099 3479 2.267426 GCAAAAACTTGGCTTTGACGT 58.733 42.857 0.00 0.00 35.03 4.34
2100 3480 2.029124 GCAAAAACTTGGCTTTGACGTG 59.971 45.455 0.00 0.00 35.03 4.49
2101 3481 1.921243 AAAACTTGGCTTTGACGTGC 58.079 45.000 0.00 0.00 0.00 5.34
2102 3482 0.814457 AAACTTGGCTTTGACGTGCA 59.186 45.000 0.00 0.00 0.00 4.57
2103 3483 0.814457 AACTTGGCTTTGACGTGCAA 59.186 45.000 0.00 0.00 33.88 4.08
2104 3484 0.814457 ACTTGGCTTTGACGTGCAAA 59.186 45.000 0.00 2.71 43.89 3.68
2105 3485 1.408702 ACTTGGCTTTGACGTGCAAAT 59.591 42.857 11.71 0.00 44.90 2.32
2106 3486 2.621055 ACTTGGCTTTGACGTGCAAATA 59.379 40.909 11.71 2.73 44.90 1.40
2107 3487 2.697431 TGGCTTTGACGTGCAAATAC 57.303 45.000 11.71 9.17 44.90 1.89
2108 3488 1.950216 TGGCTTTGACGTGCAAATACA 59.050 42.857 11.71 10.91 44.90 2.29
2109 3489 2.031245 TGGCTTTGACGTGCAAATACAG 60.031 45.455 11.71 4.21 44.90 2.74
2110 3490 2.031157 GGCTTTGACGTGCAAATACAGT 60.031 45.455 11.71 0.00 44.90 3.55
2111 3491 2.973224 GCTTTGACGTGCAAATACAGTG 59.027 45.455 11.71 0.00 44.90 3.66
2112 3492 2.679355 TTGACGTGCAAATACAGTGC 57.321 45.000 0.00 0.00 42.55 4.40
2113 3493 1.877637 TGACGTGCAAATACAGTGCT 58.122 45.000 0.00 0.00 42.69 4.40
2114 3494 2.217750 TGACGTGCAAATACAGTGCTT 58.782 42.857 0.00 0.00 42.69 3.91
2115 3495 3.394719 TGACGTGCAAATACAGTGCTTA 58.605 40.909 0.00 0.00 42.69 3.09
2116 3496 4.000325 TGACGTGCAAATACAGTGCTTAT 59.000 39.130 0.00 0.00 42.69 1.73
2117 3497 4.092821 TGACGTGCAAATACAGTGCTTATC 59.907 41.667 0.00 0.00 42.69 1.75
2118 3498 4.253685 ACGTGCAAATACAGTGCTTATCT 58.746 39.130 0.00 0.00 42.69 1.98
2119 3499 4.330074 ACGTGCAAATACAGTGCTTATCTC 59.670 41.667 0.00 0.00 42.69 2.75
2120 3500 4.329801 CGTGCAAATACAGTGCTTATCTCA 59.670 41.667 0.00 0.00 42.69 3.27
2121 3501 5.007039 CGTGCAAATACAGTGCTTATCTCAT 59.993 40.000 0.00 0.00 42.69 2.90
2122 3502 6.457392 CGTGCAAATACAGTGCTTATCTCATT 60.457 38.462 0.00 0.00 42.69 2.57
2123 3503 7.253422 GTGCAAATACAGTGCTTATCTCATTT 58.747 34.615 0.00 0.00 42.69 2.32
2124 3504 7.756722 GTGCAAATACAGTGCTTATCTCATTTT 59.243 33.333 0.00 0.00 42.69 1.82
2125 3505 7.756272 TGCAAATACAGTGCTTATCTCATTTTG 59.244 33.333 0.00 0.00 42.69 2.44
2126 3506 7.253883 GCAAATACAGTGCTTATCTCATTTTGC 60.254 37.037 0.00 0.00 39.00 3.68
2127 3507 7.395190 AATACAGTGCTTATCTCATTTTGCA 57.605 32.000 0.00 0.00 0.00 4.08
2128 3508 5.909621 ACAGTGCTTATCTCATTTTGCAT 57.090 34.783 0.00 0.00 32.98 3.96
2129 3509 8.681486 ATACAGTGCTTATCTCATTTTGCATA 57.319 30.769 0.00 0.00 32.98 3.14
2130 3510 6.789262 ACAGTGCTTATCTCATTTTGCATAC 58.211 36.000 0.00 0.00 32.98 2.39
2131 3511 5.905733 CAGTGCTTATCTCATTTTGCATACG 59.094 40.000 0.00 0.00 32.98 3.06
2132 3512 5.008019 AGTGCTTATCTCATTTTGCATACGG 59.992 40.000 0.00 0.00 32.98 4.02
2133 3513 5.007626 GTGCTTATCTCATTTTGCATACGGA 59.992 40.000 0.00 0.00 32.98 4.69
2134 3514 5.588246 TGCTTATCTCATTTTGCATACGGAA 59.412 36.000 0.00 0.00 0.00 4.30
2135 3515 5.909610 GCTTATCTCATTTTGCATACGGAAC 59.090 40.000 0.00 0.00 0.00 3.62
2136 3516 4.900635 ATCTCATTTTGCATACGGAACC 57.099 40.909 0.00 0.00 0.00 3.62
2137 3517 2.675844 TCTCATTTTGCATACGGAACCG 59.324 45.455 11.83 11.83 46.03 4.44
2138 3518 1.740585 TCATTTTGCATACGGAACCGG 59.259 47.619 17.44 0.00 44.69 5.28
2139 3519 0.454196 ATTTTGCATACGGAACCGGC 59.546 50.000 17.44 11.35 44.69 6.13
2140 3520 1.913451 TTTTGCATACGGAACCGGCG 61.913 55.000 17.44 0.00 44.69 6.46
2141 3521 4.823419 TGCATACGGAACCGGCGG 62.823 66.667 27.06 27.06 44.69 6.13
2142 3522 4.825252 GCATACGGAACCGGCGGT 62.825 66.667 28.83 28.83 44.69 5.68
2143 3523 2.888534 CATACGGAACCGGCGGTG 60.889 66.667 34.87 22.78 44.69 4.94
2144 3524 3.069946 ATACGGAACCGGCGGTGA 61.070 61.111 34.87 15.95 44.69 4.02
2145 3525 3.360956 ATACGGAACCGGCGGTGAC 62.361 63.158 34.87 27.41 44.69 3.67
2147 3527 3.751246 CGGAACCGGCGGTGACTA 61.751 66.667 34.87 0.00 35.34 2.59
2148 3528 2.183555 GGAACCGGCGGTGACTAG 59.816 66.667 34.87 3.48 35.34 2.57
2149 3529 2.183555 GAACCGGCGGTGACTAGG 59.816 66.667 34.87 2.59 35.34 3.02
2150 3530 4.078516 AACCGGCGGTGACTAGGC 62.079 66.667 34.87 0.00 35.34 3.93
2154 3534 4.530857 GGCGGTGACTAGGCGCAT 62.531 66.667 12.12 3.98 0.00 4.73
2155 3535 3.264897 GCGGTGACTAGGCGCATG 61.265 66.667 12.12 3.73 0.00 4.06
2156 3536 2.586079 CGGTGACTAGGCGCATGG 60.586 66.667 12.12 6.86 0.00 3.66
2157 3537 2.203070 GGTGACTAGGCGCATGGG 60.203 66.667 12.12 5.19 0.00 4.00
2158 3538 2.203070 GTGACTAGGCGCATGGGG 60.203 66.667 10.83 0.00 0.00 4.96
2159 3539 4.175337 TGACTAGGCGCATGGGGC 62.175 66.667 26.40 26.40 40.84 5.80
2169 3549 2.282816 CATGGGGCCCGTTGTCAA 60.283 61.111 16.67 0.00 0.00 3.18
2170 3550 2.282887 ATGGGGCCCGTTGTCAAC 60.283 61.111 19.83 5.58 0.00 3.18
2171 3551 3.879180 ATGGGGCCCGTTGTCAACC 62.879 63.158 19.83 0.00 0.00 3.77
2172 3552 4.589675 GGGGCCCGTTGTCAACCA 62.590 66.667 17.79 0.00 0.00 3.67
2173 3553 3.292159 GGGCCCGTTGTCAACCAC 61.292 66.667 5.69 0.00 0.00 4.16
2174 3554 2.203294 GGCCCGTTGTCAACCACT 60.203 61.111 10.12 0.00 0.00 4.00
2175 3555 1.071814 GGCCCGTTGTCAACCACTA 59.928 57.895 10.12 0.00 0.00 2.74
2176 3556 0.953960 GGCCCGTTGTCAACCACTAG 60.954 60.000 10.12 0.00 0.00 2.57
2177 3557 0.034337 GCCCGTTGTCAACCACTAGA 59.966 55.000 10.12 0.00 0.00 2.43
2178 3558 1.792006 CCCGTTGTCAACCACTAGAC 58.208 55.000 10.12 0.00 35.37 2.59
2179 3559 1.607251 CCCGTTGTCAACCACTAGACC 60.607 57.143 10.12 0.00 33.89 3.85
2180 3560 1.069513 CCGTTGTCAACCACTAGACCA 59.930 52.381 10.12 0.00 33.89 4.02
2181 3561 2.404215 CGTTGTCAACCACTAGACCAG 58.596 52.381 10.12 0.00 33.89 4.00
2182 3562 2.767505 GTTGTCAACCACTAGACCAGG 58.232 52.381 4.21 0.00 33.89 4.45
2183 3563 2.367567 GTTGTCAACCACTAGACCAGGA 59.632 50.000 4.21 0.00 33.89 3.86
2184 3564 2.248248 TGTCAACCACTAGACCAGGAG 58.752 52.381 0.00 0.00 33.89 3.69
2185 3565 2.158370 TGTCAACCACTAGACCAGGAGA 60.158 50.000 0.00 0.00 33.89 3.71
2186 3566 2.897969 GTCAACCACTAGACCAGGAGAA 59.102 50.000 0.00 0.00 0.00 2.87
2187 3567 3.056465 GTCAACCACTAGACCAGGAGAAG 60.056 52.174 0.00 0.00 0.00 2.85
2188 3568 3.165875 CAACCACTAGACCAGGAGAAGA 58.834 50.000 0.00 0.00 0.00 2.87
2189 3569 3.094484 ACCACTAGACCAGGAGAAGAG 57.906 52.381 0.00 0.00 0.00 2.85
2190 3570 2.291930 ACCACTAGACCAGGAGAAGAGG 60.292 54.545 0.00 0.00 0.00 3.69
2191 3571 2.383855 CACTAGACCAGGAGAAGAGGG 58.616 57.143 0.00 0.00 0.00 4.30
2192 3572 2.004589 ACTAGACCAGGAGAAGAGGGT 58.995 52.381 0.00 0.00 36.05 4.34
2193 3573 2.291930 ACTAGACCAGGAGAAGAGGGTG 60.292 54.545 0.00 0.00 32.77 4.61
2194 3574 0.489567 AGACCAGGAGAAGAGGGTGT 59.510 55.000 0.00 0.00 32.77 4.16
2195 3575 0.610687 GACCAGGAGAAGAGGGTGTG 59.389 60.000 0.00 0.00 32.77 3.82
2196 3576 0.104934 ACCAGGAGAAGAGGGTGTGT 60.105 55.000 0.00 0.00 31.04 3.72
2197 3577 0.322975 CCAGGAGAAGAGGGTGTGTG 59.677 60.000 0.00 0.00 0.00 3.82
2198 3578 1.342074 CAGGAGAAGAGGGTGTGTGA 58.658 55.000 0.00 0.00 0.00 3.58
2199 3579 1.001406 CAGGAGAAGAGGGTGTGTGAC 59.999 57.143 0.00 0.00 0.00 3.67
2200 3580 1.133009 AGGAGAAGAGGGTGTGTGACT 60.133 52.381 0.00 0.00 0.00 3.41
2201 3581 1.694696 GGAGAAGAGGGTGTGTGACTT 59.305 52.381 0.00 0.00 0.00 3.01
2202 3582 2.897969 GGAGAAGAGGGTGTGTGACTTA 59.102 50.000 0.00 0.00 0.00 2.24
2203 3583 3.515901 GGAGAAGAGGGTGTGTGACTTAT 59.484 47.826 0.00 0.00 0.00 1.73
2204 3584 4.020128 GGAGAAGAGGGTGTGTGACTTATT 60.020 45.833 0.00 0.00 0.00 1.40
2205 3585 5.513267 GGAGAAGAGGGTGTGTGACTTATTT 60.513 44.000 0.00 0.00 0.00 1.40
2206 3586 5.941788 AGAAGAGGGTGTGTGACTTATTTT 58.058 37.500 0.00 0.00 0.00 1.82
2207 3587 6.365520 AGAAGAGGGTGTGTGACTTATTTTT 58.634 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.343057 GGTCATGGATGTATGAGATATAGGACA 59.657 40.741 0.00 0.00 37.72 4.02
57 58 6.650120 AGTTTAGTTTCGGTCATGGATGTAT 58.350 36.000 0.00 0.00 0.00 2.29
95 96 8.194769 AGATACATAACACGATGAACACATACA 58.805 33.333 0.00 0.00 0.00 2.29
96 97 8.575565 AGATACATAACACGATGAACACATAC 57.424 34.615 0.00 0.00 0.00 2.39
103 104 9.986833 CATCAAAAAGATACATAACACGATGAA 57.013 29.630 0.00 0.00 34.43 2.57
108 109 6.907212 GGAGCATCAAAAAGATACATAACACG 59.093 38.462 0.00 0.00 36.25 4.49
110 111 7.936496 TGGAGCATCAAAAAGATACATAACA 57.064 32.000 0.00 0.00 36.25 2.41
111 112 9.807649 AAATGGAGCATCAAAAAGATACATAAC 57.192 29.630 0.00 0.00 36.25 1.89
142 143 6.164876 TCCGACAAAAGGTGTTATTTATCGA 58.835 36.000 1.02 0.00 41.96 3.59
144 145 9.465985 TTTTTCCGACAAAAGGTGTTATTTATC 57.534 29.630 0.00 0.00 41.96 1.75
256 264 2.748058 GAAAGTTCCGGGAGCCTGCA 62.748 60.000 7.32 0.00 0.00 4.41
257 265 2.034221 AAAGTTCCGGGAGCCTGC 59.966 61.111 7.32 0.00 0.00 4.85
258 266 1.741770 CGAAAGTTCCGGGAGCCTG 60.742 63.158 7.32 0.00 0.00 4.85
259 267 2.214920 ACGAAAGTTCCGGGAGCCT 61.215 57.895 7.32 0.00 46.40 4.58
285 293 3.400054 AGCCGGGGGTAGCTCAAC 61.400 66.667 2.18 0.00 32.71 3.18
291 299 4.569180 CCATGCAGCCGGGGGTAG 62.569 72.222 2.18 0.00 0.00 3.18
298 306 0.107897 TACCACTTACCATGCAGCCG 60.108 55.000 0.00 0.00 0.00 5.52
373 395 3.628005 CGTAAAGACGGCATCGGTA 57.372 52.632 0.00 0.00 45.63 4.02
388 410 4.456222 TGCGATTTTGGGATTCTTTTCGTA 59.544 37.500 0.00 0.00 0.00 3.43
447 469 1.844357 CGCACTAGTTATGTTCGGTCG 59.156 52.381 0.00 0.00 0.00 4.79
460 482 1.004185 GCAAGCATGACATCGCACTAG 60.004 52.381 0.00 0.00 0.00 2.57
476 498 3.058160 CAGTTGGGGGCGAGCAAG 61.058 66.667 0.00 0.00 0.00 4.01
490 512 1.201181 CAAGTCAGCTAGTCTCGCAGT 59.799 52.381 0.00 0.00 0.00 4.40
523 545 6.553100 TGTCAAAATTCAAAGGGAAGTGGTAT 59.447 34.615 0.00 0.00 39.30 2.73
558 580 1.069090 TGAGAAGAACACCGCGCTT 59.931 52.632 5.56 0.00 0.00 4.68
564 586 6.861065 TTCTTTATGTGTGAGAAGAACACC 57.139 37.500 4.40 0.00 45.94 4.16
581 687 3.749609 GCTAGTCCCGCAGTTTTTCTTTA 59.250 43.478 0.00 0.00 0.00 1.85
583 689 2.152016 GCTAGTCCCGCAGTTTTTCTT 58.848 47.619 0.00 0.00 0.00 2.52
585 691 0.803117 GGCTAGTCCCGCAGTTTTTC 59.197 55.000 0.00 0.00 0.00 2.29
588 694 2.264794 CGGCTAGTCCCGCAGTTT 59.735 61.111 0.00 0.00 42.03 2.66
606 712 2.812011 CCTACCTAGCAAACGCTGTTTT 59.188 45.455 4.31 0.00 40.87 2.43
616 722 2.185387 GACCCAAGACCTACCTAGCAA 58.815 52.381 0.00 0.00 0.00 3.91
697 834 5.066117 AGACGTGTAGATGTGTATGTGTAGG 59.934 44.000 0.00 0.00 0.00 3.18
699 836 6.505044 AAGACGTGTAGATGTGTATGTGTA 57.495 37.500 0.00 0.00 0.00 2.90
700 837 5.386958 AAGACGTGTAGATGTGTATGTGT 57.613 39.130 0.00 0.00 0.00 3.72
701 838 6.706055 AAAAGACGTGTAGATGTGTATGTG 57.294 37.500 0.00 0.00 0.00 3.21
702 839 6.367969 GGAAAAAGACGTGTAGATGTGTATGT 59.632 38.462 0.00 0.00 0.00 2.29
703 840 6.367695 TGGAAAAAGACGTGTAGATGTGTATG 59.632 38.462 0.00 0.00 0.00 2.39
704 841 6.460781 TGGAAAAAGACGTGTAGATGTGTAT 58.539 36.000 0.00 0.00 0.00 2.29
789 926 0.319900 GTGCTTGCTGAGTTCGGAGA 60.320 55.000 0.00 0.00 0.00 3.71
796 933 0.536006 GGGTGAAGTGCTTGCTGAGT 60.536 55.000 0.00 0.00 0.00 3.41
805 946 1.374758 CGGTGAGAGGGTGAAGTGC 60.375 63.158 0.00 0.00 0.00 4.40
809 950 0.178973 TGAGACGGTGAGAGGGTGAA 60.179 55.000 0.00 0.00 0.00 3.18
870 1021 0.244178 TGGTATTGTGTGCGAGCGTA 59.756 50.000 0.00 0.00 0.00 4.42
886 1037 1.066454 GTTTGCTACGGCTGTTTTGGT 59.934 47.619 1.99 0.00 39.59 3.67
887 1038 1.336755 AGTTTGCTACGGCTGTTTTGG 59.663 47.619 1.99 0.00 39.59 3.28
889 1040 2.290641 CAGAGTTTGCTACGGCTGTTTT 59.709 45.455 1.99 0.00 39.59 2.43
895 1059 2.740714 CGCCAGAGTTTGCTACGGC 61.741 63.158 0.00 0.00 38.24 5.68
900 1064 3.044305 GTCGCGCCAGAGTTTGCT 61.044 61.111 0.00 0.00 0.00 3.91
926 1090 6.208988 ACTCTGCAGAAGTCGATTACAATA 57.791 37.500 18.85 0.00 0.00 1.90
929 1093 4.022329 TGAACTCTGCAGAAGTCGATTACA 60.022 41.667 18.85 5.36 0.00 2.41
930 1094 4.486090 TGAACTCTGCAGAAGTCGATTAC 58.514 43.478 18.85 2.95 0.00 1.89
933 1097 2.560542 ACTGAACTCTGCAGAAGTCGAT 59.439 45.455 18.85 7.02 36.86 3.59
935 1099 2.323959 GACTGAACTCTGCAGAAGTCG 58.676 52.381 23.60 17.46 36.86 4.18
985 1372 0.990374 GCCATCATAGAGCTCCCCAT 59.010 55.000 10.93 0.00 0.00 4.00
988 1375 1.405256 CGATGCCATCATAGAGCTCCC 60.405 57.143 10.93 0.00 31.96 4.30
997 1384 1.069765 GGACGGACGATGCCATCAT 59.930 57.895 5.40 0.00 35.17 2.45
1145 1532 3.063197 ATCTCCCGTCTCTCCGCCT 62.063 63.158 0.00 0.00 0.00 5.52
1222 1620 2.227089 GATCCAAGCTGTCCGTCCGT 62.227 60.000 0.00 0.00 0.00 4.69
1227 1625 1.079127 AACCGATCCAAGCTGTCCG 60.079 57.895 0.00 0.00 0.00 4.79
1230 1628 0.321653 GACCAACCGATCCAAGCTGT 60.322 55.000 0.00 0.00 0.00 4.40
1274 1678 3.879892 GCCTTGGATTCACTAACCATCTC 59.120 47.826 0.00 0.00 33.56 2.75
1280 1684 2.808906 AGGGCCTTGGATTCACTAAC 57.191 50.000 0.00 0.00 0.00 2.34
1315 1720 3.849911 TCAAAGAACCACTCTATCTGCG 58.150 45.455 0.00 0.00 32.46 5.18
1354 1765 9.939802 AGTAGTAATAACTTCCAACGAGAAAAT 57.060 29.630 0.00 0.00 37.15 1.82
1379 1790 4.827835 TCTTATATTGTGAGACGGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
1381 1792 5.620205 CGATCTTATATTGTGAGACGGAGGG 60.620 48.000 0.00 0.00 0.00 4.30
1385 1796 7.306632 GGAAAACGATCTTATATTGTGAGACGG 60.307 40.741 0.00 0.00 0.00 4.79
1386 1797 7.222031 TGGAAAACGATCTTATATTGTGAGACG 59.778 37.037 0.00 0.00 0.00 4.18
1497 1908 5.792741 TGAGCCAATAAAATTCACCCTTTG 58.207 37.500 0.00 0.00 0.00 2.77
1550 1961 2.045926 GCAGAGGCCGGATGTGTT 60.046 61.111 5.05 0.00 0.00 3.32
1573 1986 1.477558 GGGTTGGCTATGTGGATCCTG 60.478 57.143 14.23 0.00 0.00 3.86
1579 1992 0.887933 GTGTTGGGTTGGCTATGTGG 59.112 55.000 0.00 0.00 0.00 4.17
1584 1997 2.785562 GTATGTGTGTTGGGTTGGCTA 58.214 47.619 0.00 0.00 0.00 3.93
1601 2014 1.065701 TGTTGCCGTGTTTTTGCGTAT 59.934 42.857 0.00 0.00 0.00 3.06
1602 2015 0.450583 TGTTGCCGTGTTTTTGCGTA 59.549 45.000 0.00 0.00 0.00 4.42
1612 2025 0.238289 CCTTGCTAGTTGTTGCCGTG 59.762 55.000 0.00 0.00 0.00 4.94
1614 2027 0.517316 GACCTTGCTAGTTGTTGCCG 59.483 55.000 0.00 0.00 0.00 5.69
1616 2029 1.946768 TGTGACCTTGCTAGTTGTTGC 59.053 47.619 0.00 0.00 0.00 4.17
1672 2085 7.609760 TGGAGCTTTTTCTTTTTCCTTTTTC 57.390 32.000 0.00 0.00 0.00 2.29
1679 2096 4.803613 TCGCTTTGGAGCTTTTTCTTTTTC 59.196 37.500 0.00 0.00 46.96 2.29
1703 2122 8.702438 GTTGTAGTTTGTCAATTGATGATTTGG 58.298 33.333 12.12 0.00 40.97 3.28
1716 2135 4.746535 TGGTCTCAGTTGTAGTTTGTCA 57.253 40.909 0.00 0.00 0.00 3.58
1881 3257 4.785453 CCCTCCGCTCAACCCTGC 62.785 72.222 0.00 0.00 0.00 4.85
1951 3331 4.736896 GACCTGACCCCACGTCGC 62.737 72.222 0.00 0.00 45.23 5.19
1952 3332 4.415332 CGACCTGACCCCACGTCG 62.415 72.222 0.00 0.00 45.23 5.12
1953 3333 4.065281 CCGACCTGACCCCACGTC 62.065 72.222 0.00 0.00 42.33 4.34
1954 3334 4.608774 TCCGACCTGACCCCACGT 62.609 66.667 0.00 0.00 0.00 4.49
1955 3335 3.760035 CTCCGACCTGACCCCACG 61.760 72.222 0.00 0.00 0.00 4.94
1956 3336 3.391382 CCTCCGACCTGACCCCAC 61.391 72.222 0.00 0.00 0.00 4.61
1957 3337 3.596799 TCCTCCGACCTGACCCCA 61.597 66.667 0.00 0.00 0.00 4.96
1964 3344 2.280404 TATGCGACCTCCTCCGACCT 62.280 60.000 0.00 0.00 0.00 3.85
1998 3378 2.467566 ACCACCGGTGTAATTGACTC 57.532 50.000 31.80 0.00 32.98 3.36
2009 3389 1.065709 CCAAGTTATAGCACCACCGGT 60.066 52.381 0.00 0.00 35.62 5.28
2010 3390 1.663695 CCAAGTTATAGCACCACCGG 58.336 55.000 0.00 0.00 0.00 5.28
2011 3391 1.014352 GCCAAGTTATAGCACCACCG 58.986 55.000 0.00 0.00 0.00 4.94
2012 3392 1.014352 CGCCAAGTTATAGCACCACC 58.986 55.000 0.00 0.00 0.00 4.61
2013 3393 0.377203 GCGCCAAGTTATAGCACCAC 59.623 55.000 0.00 0.00 0.00 4.16
2014 3394 0.035915 TGCGCCAAGTTATAGCACCA 60.036 50.000 4.18 0.00 32.43 4.17
2015 3395 1.091537 TTGCGCCAAGTTATAGCACC 58.908 50.000 4.18 0.00 37.57 5.01
2016 3396 2.515912 GTTTGCGCCAAGTTATAGCAC 58.484 47.619 4.18 0.00 37.57 4.40
2017 3397 1.129624 CGTTTGCGCCAAGTTATAGCA 59.870 47.619 4.18 0.00 35.90 3.49
2018 3398 1.531058 CCGTTTGCGCCAAGTTATAGC 60.531 52.381 4.18 0.00 36.67 2.97
2019 3399 2.004017 TCCGTTTGCGCCAAGTTATAG 58.996 47.619 4.18 0.00 36.67 1.31
2020 3400 1.733360 GTCCGTTTGCGCCAAGTTATA 59.267 47.619 4.18 0.00 36.67 0.98
2021 3401 0.519961 GTCCGTTTGCGCCAAGTTAT 59.480 50.000 4.18 0.00 36.67 1.89
2022 3402 0.814410 TGTCCGTTTGCGCCAAGTTA 60.814 50.000 4.18 0.00 36.67 2.24
2023 3403 2.058829 CTGTCCGTTTGCGCCAAGTT 62.059 55.000 4.18 0.00 36.67 2.66
2024 3404 2.515057 TGTCCGTTTGCGCCAAGT 60.515 55.556 4.18 0.00 36.67 3.16
2025 3405 2.058829 AACTGTCCGTTTGCGCCAAG 62.059 55.000 4.18 0.00 36.67 3.61
2026 3406 1.658686 AAACTGTCCGTTTGCGCCAA 61.659 50.000 4.18 0.00 43.90 4.52
2027 3407 2.115911 AAACTGTCCGTTTGCGCCA 61.116 52.632 4.18 0.00 43.90 5.69
2028 3408 2.719354 AAACTGTCCGTTTGCGCC 59.281 55.556 4.18 0.00 43.90 6.53
2033 3413 2.158871 TCTAGCACCAAACTGTCCGTTT 60.159 45.455 0.00 0.00 46.41 3.60
2034 3414 1.414919 TCTAGCACCAAACTGTCCGTT 59.585 47.619 0.00 0.00 37.47 4.44
2035 3415 1.045407 TCTAGCACCAAACTGTCCGT 58.955 50.000 0.00 0.00 0.00 4.69
2036 3416 2.069273 CTTCTAGCACCAAACTGTCCG 58.931 52.381 0.00 0.00 0.00 4.79
2037 3417 3.127425 ACTTCTAGCACCAAACTGTCC 57.873 47.619 0.00 0.00 0.00 4.02
2038 3418 3.877508 ACAACTTCTAGCACCAAACTGTC 59.122 43.478 0.00 0.00 0.00 3.51
2039 3419 3.627577 CACAACTTCTAGCACCAAACTGT 59.372 43.478 0.00 0.00 0.00 3.55
2040 3420 3.003689 CCACAACTTCTAGCACCAAACTG 59.996 47.826 0.00 0.00 0.00 3.16
2041 3421 3.214328 CCACAACTTCTAGCACCAAACT 58.786 45.455 0.00 0.00 0.00 2.66
2042 3422 2.287608 GCCACAACTTCTAGCACCAAAC 60.288 50.000 0.00 0.00 0.00 2.93
2043 3423 1.953686 GCCACAACTTCTAGCACCAAA 59.046 47.619 0.00 0.00 0.00 3.28
2044 3424 1.133945 TGCCACAACTTCTAGCACCAA 60.134 47.619 0.00 0.00 0.00 3.67
2045 3425 0.472044 TGCCACAACTTCTAGCACCA 59.528 50.000 0.00 0.00 0.00 4.17
2046 3426 1.826385 ATGCCACAACTTCTAGCACC 58.174 50.000 0.00 0.00 36.06 5.01
2047 3427 3.334691 TGTATGCCACAACTTCTAGCAC 58.665 45.455 0.00 0.00 36.06 4.40
2048 3428 3.694043 TGTATGCCACAACTTCTAGCA 57.306 42.857 0.00 0.00 37.94 3.49
2049 3429 6.677781 TTAATGTATGCCACAACTTCTAGC 57.322 37.500 0.00 0.00 41.55 3.42
2050 3430 8.177663 CACTTTAATGTATGCCACAACTTCTAG 58.822 37.037 0.00 0.00 41.55 2.43
2051 3431 7.880713 TCACTTTAATGTATGCCACAACTTCTA 59.119 33.333 0.00 0.00 41.55 2.10
2052 3432 6.714810 TCACTTTAATGTATGCCACAACTTCT 59.285 34.615 0.00 0.00 41.55 2.85
2053 3433 6.908825 TCACTTTAATGTATGCCACAACTTC 58.091 36.000 0.00 0.00 41.55 3.01
2054 3434 6.892658 TCACTTTAATGTATGCCACAACTT 57.107 33.333 0.00 0.00 41.55 2.66
2055 3435 6.625740 GCATCACTTTAATGTATGCCACAACT 60.626 38.462 16.43 0.00 41.55 3.16
2056 3436 5.516339 GCATCACTTTAATGTATGCCACAAC 59.484 40.000 16.43 0.00 41.55 3.32
2057 3437 5.184671 TGCATCACTTTAATGTATGCCACAA 59.815 36.000 20.35 9.26 41.55 3.33
2058 3438 4.704057 TGCATCACTTTAATGTATGCCACA 59.296 37.500 20.35 9.47 41.72 4.17
2059 3439 5.247507 TGCATCACTTTAATGTATGCCAC 57.752 39.130 20.35 4.04 41.72 5.01
2060 3440 5.911378 TTGCATCACTTTAATGTATGCCA 57.089 34.783 20.35 13.58 41.72 4.92
2061 3441 7.331687 AGTTTTTGCATCACTTTAATGTATGCC 59.668 33.333 20.35 12.05 41.72 4.40
2062 3442 8.243289 AGTTTTTGCATCACTTTAATGTATGC 57.757 30.769 18.43 18.43 42.52 3.14
2064 3444 9.206870 CCAAGTTTTTGCATCACTTTAATGTAT 57.793 29.630 3.54 0.00 32.79 2.29
2065 3445 7.170658 GCCAAGTTTTTGCATCACTTTAATGTA 59.829 33.333 3.54 0.00 32.79 2.29
2066 3446 6.018016 GCCAAGTTTTTGCATCACTTTAATGT 60.018 34.615 3.54 0.00 32.79 2.71
2067 3447 6.203338 AGCCAAGTTTTTGCATCACTTTAATG 59.797 34.615 3.54 0.00 32.79 1.90
2068 3448 6.290605 AGCCAAGTTTTTGCATCACTTTAAT 58.709 32.000 3.54 0.00 32.79 1.40
2069 3449 5.669477 AGCCAAGTTTTTGCATCACTTTAA 58.331 33.333 3.54 0.00 32.79 1.52
2070 3450 5.275067 AGCCAAGTTTTTGCATCACTTTA 57.725 34.783 3.54 0.00 32.79 1.85
2071 3451 4.141233 AGCCAAGTTTTTGCATCACTTT 57.859 36.364 3.54 0.00 32.79 2.66
2072 3452 3.825143 AGCCAAGTTTTTGCATCACTT 57.175 38.095 0.00 0.00 32.79 3.16
2073 3453 3.825143 AAGCCAAGTTTTTGCATCACT 57.175 38.095 0.00 0.00 32.79 3.41
2074 3454 3.870419 TCAAAGCCAAGTTTTTGCATCAC 59.130 39.130 0.00 0.00 34.96 3.06
2075 3455 3.870419 GTCAAAGCCAAGTTTTTGCATCA 59.130 39.130 0.00 0.00 34.96 3.07
2076 3456 3.060339 CGTCAAAGCCAAGTTTTTGCATC 60.060 43.478 0.00 0.00 34.96 3.91
2077 3457 2.865551 CGTCAAAGCCAAGTTTTTGCAT 59.134 40.909 0.00 0.00 34.96 3.96
2078 3458 2.266554 CGTCAAAGCCAAGTTTTTGCA 58.733 42.857 0.00 0.00 34.96 4.08
2079 3459 2.029124 CACGTCAAAGCCAAGTTTTTGC 59.971 45.455 0.00 0.00 34.96 3.68
2080 3460 2.029124 GCACGTCAAAGCCAAGTTTTTG 59.971 45.455 0.00 0.00 36.00 2.44
2081 3461 2.267426 GCACGTCAAAGCCAAGTTTTT 58.733 42.857 0.00 0.00 0.00 1.94
2082 3462 1.203523 TGCACGTCAAAGCCAAGTTTT 59.796 42.857 0.00 0.00 0.00 2.43
2083 3463 0.814457 TGCACGTCAAAGCCAAGTTT 59.186 45.000 0.00 0.00 0.00 2.66
2084 3464 0.814457 TTGCACGTCAAAGCCAAGTT 59.186 45.000 0.00 0.00 0.00 2.66
2085 3465 0.814457 TTTGCACGTCAAAGCCAAGT 59.186 45.000 8.47 0.00 39.58 3.16
2086 3466 2.138596 ATTTGCACGTCAAAGCCAAG 57.861 45.000 15.10 0.00 46.68 3.61
2087 3467 2.359214 TGTATTTGCACGTCAAAGCCAA 59.641 40.909 15.10 2.83 46.68 4.52
2088 3468 1.950216 TGTATTTGCACGTCAAAGCCA 59.050 42.857 15.10 11.82 46.68 4.75
2089 3469 2.031157 ACTGTATTTGCACGTCAAAGCC 60.031 45.455 15.10 10.13 46.68 4.35
2090 3470 2.973224 CACTGTATTTGCACGTCAAAGC 59.027 45.455 15.10 4.37 46.68 3.51
2091 3471 2.973224 GCACTGTATTTGCACGTCAAAG 59.027 45.455 15.10 7.18 46.68 2.77
2093 3473 2.217750 AGCACTGTATTTGCACGTCAA 58.782 42.857 0.00 0.00 42.83 3.18
2094 3474 1.877637 AGCACTGTATTTGCACGTCA 58.122 45.000 0.00 0.00 42.83 4.35
2095 3475 2.969443 AAGCACTGTATTTGCACGTC 57.031 45.000 0.00 0.00 42.83 4.34
2096 3476 4.253685 AGATAAGCACTGTATTTGCACGT 58.746 39.130 0.00 0.00 42.83 4.49
2097 3477 4.329801 TGAGATAAGCACTGTATTTGCACG 59.670 41.667 0.00 0.00 42.83 5.34
2098 3478 5.801350 TGAGATAAGCACTGTATTTGCAC 57.199 39.130 0.00 0.00 42.83 4.57
2099 3479 7.395190 AAATGAGATAAGCACTGTATTTGCA 57.605 32.000 0.00 0.00 42.83 4.08
2100 3480 7.253883 GCAAAATGAGATAAGCACTGTATTTGC 60.254 37.037 0.00 0.00 40.31 3.68
2101 3481 7.756272 TGCAAAATGAGATAAGCACTGTATTTG 59.244 33.333 0.00 0.00 0.00 2.32
2102 3482 7.829725 TGCAAAATGAGATAAGCACTGTATTT 58.170 30.769 0.00 0.00 0.00 1.40
2103 3483 7.395190 TGCAAAATGAGATAAGCACTGTATT 57.605 32.000 0.00 0.00 0.00 1.89
2104 3484 7.578310 ATGCAAAATGAGATAAGCACTGTAT 57.422 32.000 0.00 0.00 34.54 2.29
2105 3485 7.254421 CGTATGCAAAATGAGATAAGCACTGTA 60.254 37.037 0.00 0.00 34.54 2.74
2106 3486 5.909621 ATGCAAAATGAGATAAGCACTGT 57.090 34.783 0.00 0.00 34.54 3.55
2107 3487 5.905733 CGTATGCAAAATGAGATAAGCACTG 59.094 40.000 0.00 0.00 34.54 3.66
2108 3488 5.008019 CCGTATGCAAAATGAGATAAGCACT 59.992 40.000 0.00 0.00 34.54 4.40
2109 3489 5.007626 TCCGTATGCAAAATGAGATAAGCAC 59.992 40.000 0.00 0.00 34.54 4.40
2110 3490 5.122519 TCCGTATGCAAAATGAGATAAGCA 58.877 37.500 0.00 0.00 36.34 3.91
2111 3491 5.673337 TCCGTATGCAAAATGAGATAAGC 57.327 39.130 0.00 0.00 0.00 3.09
2112 3492 6.430451 GGTTCCGTATGCAAAATGAGATAAG 58.570 40.000 0.00 0.00 0.00 1.73
2113 3493 5.007234 CGGTTCCGTATGCAAAATGAGATAA 59.993 40.000 2.82 0.00 0.00 1.75
2114 3494 4.509970 CGGTTCCGTATGCAAAATGAGATA 59.490 41.667 2.82 0.00 0.00 1.98
2115 3495 3.312421 CGGTTCCGTATGCAAAATGAGAT 59.688 43.478 2.82 0.00 0.00 2.75
2116 3496 2.675844 CGGTTCCGTATGCAAAATGAGA 59.324 45.455 2.82 0.00 0.00 3.27
2117 3497 2.223249 CCGGTTCCGTATGCAAAATGAG 60.223 50.000 10.36 0.00 0.00 2.90
2118 3498 1.740585 CCGGTTCCGTATGCAAAATGA 59.259 47.619 10.36 0.00 0.00 2.57
2119 3499 1.797348 GCCGGTTCCGTATGCAAAATG 60.797 52.381 1.90 0.00 0.00 2.32
2120 3500 0.454196 GCCGGTTCCGTATGCAAAAT 59.546 50.000 1.90 0.00 0.00 1.82
2121 3501 1.877367 GCCGGTTCCGTATGCAAAA 59.123 52.632 1.90 0.00 0.00 2.44
2122 3502 2.392181 CGCCGGTTCCGTATGCAAA 61.392 57.895 1.90 0.00 0.00 3.68
2123 3503 2.816083 CGCCGGTTCCGTATGCAA 60.816 61.111 1.90 0.00 0.00 4.08
2124 3504 4.823419 CCGCCGGTTCCGTATGCA 62.823 66.667 1.90 0.00 0.00 3.96
2125 3505 4.825252 ACCGCCGGTTCCGTATGC 62.825 66.667 1.02 5.80 27.29 3.14
2126 3506 2.888534 CACCGCCGGTTCCGTATG 60.889 66.667 5.76 0.00 31.02 2.39
2127 3507 3.069946 TCACCGCCGGTTCCGTAT 61.070 61.111 5.76 0.00 31.02 3.06
2128 3508 4.054825 GTCACCGCCGGTTCCGTA 62.055 66.667 5.76 0.00 31.02 4.02
2130 3510 3.695022 CTAGTCACCGCCGGTTCCG 62.695 68.421 5.76 4.08 31.02 4.30
2131 3511 2.183555 CTAGTCACCGCCGGTTCC 59.816 66.667 5.76 0.00 31.02 3.62
2132 3512 2.183555 CCTAGTCACCGCCGGTTC 59.816 66.667 5.76 2.58 31.02 3.62
2133 3513 4.078516 GCCTAGTCACCGCCGGTT 62.079 66.667 5.76 0.00 31.02 4.44
2137 3517 4.530857 ATGCGCCTAGTCACCGCC 62.531 66.667 4.18 0.00 46.50 6.13
2139 3519 2.586079 CCATGCGCCTAGTCACCG 60.586 66.667 4.18 0.00 0.00 4.94
2140 3520 2.203070 CCCATGCGCCTAGTCACC 60.203 66.667 4.18 0.00 0.00 4.02
2141 3521 2.203070 CCCCATGCGCCTAGTCAC 60.203 66.667 4.18 0.00 0.00 3.67
2142 3522 4.175337 GCCCCATGCGCCTAGTCA 62.175 66.667 4.18 0.00 0.00 3.41
2143 3523 4.937431 GGCCCCATGCGCCTAGTC 62.937 72.222 4.18 0.00 43.48 2.59
2152 3532 2.282816 TTGACAACGGGCCCCATG 60.283 61.111 18.66 18.15 0.00 3.66
2153 3533 2.282887 GTTGACAACGGGCCCCAT 60.283 61.111 18.66 0.37 0.00 4.00
2154 3534 4.589675 GGTTGACAACGGGCCCCA 62.590 66.667 18.66 4.54 0.00 4.96
2155 3535 4.589675 TGGTTGACAACGGGCCCC 62.590 66.667 18.66 1.13 0.00 5.80
2156 3536 2.400269 TAGTGGTTGACAACGGGCCC 62.400 60.000 13.57 13.57 0.00 5.80
2157 3537 0.953960 CTAGTGGTTGACAACGGGCC 60.954 60.000 12.07 0.00 0.00 5.80
2158 3538 0.034337 TCTAGTGGTTGACAACGGGC 59.966 55.000 12.07 5.01 0.00 6.13
2159 3539 1.607251 GGTCTAGTGGTTGACAACGGG 60.607 57.143 12.07 1.25 35.11 5.28
2160 3540 1.069513 TGGTCTAGTGGTTGACAACGG 59.930 52.381 12.07 0.94 35.11 4.44
2161 3541 2.404215 CTGGTCTAGTGGTTGACAACG 58.596 52.381 12.07 0.00 35.11 4.10
2162 3542 2.367567 TCCTGGTCTAGTGGTTGACAAC 59.632 50.000 9.97 9.97 35.11 3.32
2163 3543 2.632996 CTCCTGGTCTAGTGGTTGACAA 59.367 50.000 0.00 0.00 35.11 3.18
2164 3544 2.158370 TCTCCTGGTCTAGTGGTTGACA 60.158 50.000 0.00 0.00 35.11 3.58
2165 3545 2.526432 TCTCCTGGTCTAGTGGTTGAC 58.474 52.381 0.00 0.00 0.00 3.18
2166 3546 2.992847 TCTCCTGGTCTAGTGGTTGA 57.007 50.000 0.00 0.00 0.00 3.18
2167 3547 3.165875 TCTTCTCCTGGTCTAGTGGTTG 58.834 50.000 0.00 0.00 0.00 3.77
2168 3548 3.436243 CTCTTCTCCTGGTCTAGTGGTT 58.564 50.000 0.00 0.00 0.00 3.67
2169 3549 2.291930 CCTCTTCTCCTGGTCTAGTGGT 60.292 54.545 0.00 0.00 0.00 4.16
2170 3550 2.383855 CCTCTTCTCCTGGTCTAGTGG 58.616 57.143 0.00 0.00 0.00 4.00
2171 3551 2.291930 ACCCTCTTCTCCTGGTCTAGTG 60.292 54.545 0.00 0.00 0.00 2.74
2172 3552 2.004589 ACCCTCTTCTCCTGGTCTAGT 58.995 52.381 0.00 0.00 0.00 2.57
2173 3553 2.291930 ACACCCTCTTCTCCTGGTCTAG 60.292 54.545 0.00 0.00 0.00 2.43
2174 3554 1.717077 ACACCCTCTTCTCCTGGTCTA 59.283 52.381 0.00 0.00 0.00 2.59
2175 3555 0.489567 ACACCCTCTTCTCCTGGTCT 59.510 55.000 0.00 0.00 0.00 3.85
2176 3556 0.610687 CACACCCTCTTCTCCTGGTC 59.389 60.000 0.00 0.00 0.00 4.02
2177 3557 0.104934 ACACACCCTCTTCTCCTGGT 60.105 55.000 0.00 0.00 0.00 4.00
2178 3558 0.322975 CACACACCCTCTTCTCCTGG 59.677 60.000 0.00 0.00 0.00 4.45
2179 3559 1.001406 GTCACACACCCTCTTCTCCTG 59.999 57.143 0.00 0.00 0.00 3.86
2180 3560 1.133009 AGTCACACACCCTCTTCTCCT 60.133 52.381 0.00 0.00 0.00 3.69
2181 3561 1.343069 AGTCACACACCCTCTTCTCC 58.657 55.000 0.00 0.00 0.00 3.71
2182 3562 4.810191 ATAAGTCACACACCCTCTTCTC 57.190 45.455 0.00 0.00 0.00 2.87
2183 3563 5.568620 AAATAAGTCACACACCCTCTTCT 57.431 39.130 0.00 0.00 0.00 2.85
2184 3564 6.635030 AAAAATAAGTCACACACCCTCTTC 57.365 37.500 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.