Multiple sequence alignment - TraesCS5D01G306700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G306700 chr5D 100.000 6230 0 0 1 6230 403061962 403068191 0.000000e+00 11505
1 TraesCS5D01G306700 chr5A 94.584 4173 160 22 7 4161 510914566 510910442 0.000000e+00 6394
2 TraesCS5D01G306700 chr5A 93.109 1306 59 17 4283 5571 510910445 510909154 0.000000e+00 1884
3 TraesCS5D01G306700 chr5A 76.519 724 83 42 5561 6230 510908946 510908256 1.300000e-81 315
4 TraesCS5D01G306700 chr5B 94.680 3590 104 36 605 4161 482997672 483001207 0.000000e+00 5491
5 TraesCS5D01G306700 chr5B 97.059 680 14 4 4283 4958 483001204 483001881 0.000000e+00 1140
6 TraesCS5D01G306700 chr5B 91.845 699 25 15 5043 5718 483001889 483002578 0.000000e+00 946
7 TraesCS5D01G306700 chr5B 86.775 431 48 5 5804 6230 483005998 483006423 7.310000e-129 472
8 TraesCS5D01G306700 chr5B 82.576 396 39 16 3370 3765 576925546 576925911 7.790000e-84 322
9 TraesCS5D01G306700 chr5B 81.143 350 35 15 624 966 482987813 482988138 1.040000e-62 252
10 TraesCS5D01G306700 chr6B 90.056 533 51 2 3065 3596 214884993 214884462 0.000000e+00 689
11 TraesCS5D01G306700 chr6B 94.118 136 7 1 4160 4294 138779047 138779182 8.190000e-49 206
12 TraesCS5D01G306700 chr6B 94.366 71 4 0 2349 2419 214885059 214884989 6.600000e-20 110
13 TraesCS5D01G306700 chr3A 95.556 135 6 0 4160 4294 474435678 474435812 3.780000e-52 217
14 TraesCS5D01G306700 chr3A 96.094 128 5 0 4160 4287 365363203 365363076 6.330000e-50 209
15 TraesCS5D01G306700 chr7D 95.455 132 6 0 4155 4286 403812032 403812163 1.760000e-50 211
16 TraesCS5D01G306700 chr4A 94.853 136 5 2 4159 4293 534541598 534541464 1.760000e-50 211
17 TraesCS5D01G306700 chr3D 94.853 136 6 1 4160 4294 123898837 123898972 1.760000e-50 211
18 TraesCS5D01G306700 chr3D 97.183 71 2 0 2349 2419 335661894 335661964 3.050000e-23 121
19 TraesCS5D01G306700 chr3D 97.059 68 2 0 2349 2416 335658239 335658306 1.420000e-21 115
20 TraesCS5D01G306700 chr6D 95.349 129 6 0 4159 4287 62116134 62116262 8.190000e-49 206
21 TraesCS5D01G306700 chr1B 95.349 129 6 0 4159 4287 31977253 31977125 8.190000e-49 206
22 TraesCS5D01G306700 chr3B 92.361 144 9 2 4160 4302 263988151 263988009 2.940000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G306700 chr5D 403061962 403068191 6229 False 11505.000000 11505 100.000000 1 6230 1 chr5D.!!$F1 6229
1 TraesCS5D01G306700 chr5A 510908256 510914566 6310 True 2864.333333 6394 88.070667 7 6230 3 chr5A.!!$R1 6223
2 TraesCS5D01G306700 chr5B 482997672 483006423 8751 False 2012.250000 5491 92.589750 605 6230 4 chr5B.!!$F3 5625
3 TraesCS5D01G306700 chr6B 214884462 214885059 597 True 399.500000 689 92.211000 2349 3596 2 chr6B.!!$R1 1247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 613 0.250209 AGCATTGCTCGGATGGCTAG 60.250 55.000 5.03 0.0 30.62 3.42 F
966 977 0.955919 CTCTCCCGAACCCTGCAAAC 60.956 60.000 0.00 0.0 0.00 2.93 F
1100 1111 1.017701 CCAAACCCTAACCGTCGCTC 61.018 60.000 0.00 0.0 0.00 5.03 F
1280 1294 1.615165 GGAACCCCTTCGACCTCCTC 61.615 65.000 0.00 0.0 0.00 3.71 F
1281 1295 1.946475 GAACCCCTTCGACCTCCTCG 61.946 65.000 0.00 0.0 44.44 4.63 F
2875 2906 1.275856 TGGATTGTTTGGCTTGGCATC 59.724 47.619 0.00 0.0 0.00 3.91 F
4174 4215 1.203087 TGAAGTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 1689 1.008538 GAGGCAAGCAAACACACGG 60.009 57.895 0.00 0.0 0.00 4.94 R
1991 2017 3.062466 GGTTCCGCCTTGCCCTTC 61.062 66.667 0.00 0.0 0.00 3.46 R
2026 2052 3.198635 GTCCAGTGATTTCTCATCCCTCA 59.801 47.826 0.00 0.0 32.98 3.86 R
2321 2347 3.385111 CAGGTGGAGATACAAGTAGGGTC 59.615 52.174 0.00 0.0 0.00 4.46 R
2965 3004 4.258702 ACTACACCTGCAGAACTACTTG 57.741 45.455 17.39 0.0 0.00 3.16 R
4591 4636 0.034896 AGTACCTGCAAAGTGGGACG 59.965 55.000 0.00 0.0 41.89 4.79 R
5889 9512 0.165295 GGCGCACTCGGAAAACTTAC 59.835 55.000 10.83 0.0 35.95 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.947388 GGTTGTGAGTGCTTTTCCCATATA 59.053 41.667 0.00 0.00 0.00 0.86
32 33 6.091555 AGTGCTTTTCCCATATAGGATAGGA 58.908 40.000 0.00 0.00 41.22 2.94
33 34 6.013293 AGTGCTTTTCCCATATAGGATAGGAC 60.013 42.308 12.85 12.85 41.22 3.85
34 35 5.250774 TGCTTTTCCCATATAGGATAGGACC 59.749 44.000 0.00 0.00 41.22 4.46
38 39 3.053095 TCCCATATAGGATAGGACCGTCC 60.053 52.174 9.81 9.81 41.22 4.79
53 54 1.403814 CGTCCTAGAAGCCCTCATCA 58.596 55.000 0.00 0.00 0.00 3.07
60 61 5.305644 TCCTAGAAGCCCTCATCAGATAAAC 59.694 44.000 0.00 0.00 0.00 2.01
69 70 6.460676 GCCCTCATCAGATAAACCAATGAAAG 60.461 42.308 0.00 0.00 0.00 2.62
70 71 6.830324 CCCTCATCAGATAAACCAATGAAAGA 59.170 38.462 0.00 0.00 0.00 2.52
72 73 8.742777 CCTCATCAGATAAACCAATGAAAGAAA 58.257 33.333 0.00 0.00 0.00 2.52
75 76 9.229784 CATCAGATAAACCAATGAAAGAAATCG 57.770 33.333 0.00 0.00 0.00 3.34
76 77 8.335532 TCAGATAAACCAATGAAAGAAATCGT 57.664 30.769 0.00 0.00 0.00 3.73
77 78 8.450964 TCAGATAAACCAATGAAAGAAATCGTC 58.549 33.333 0.00 0.00 0.00 4.20
78 79 8.454106 CAGATAAACCAATGAAAGAAATCGTCT 58.546 33.333 0.00 0.00 38.69 4.18
80 81 5.376854 AACCAATGAAAGAAATCGTCTGG 57.623 39.130 0.00 0.00 36.40 3.86
81 82 4.651778 ACCAATGAAAGAAATCGTCTGGA 58.348 39.130 0.00 0.00 36.40 3.86
82 83 5.070001 ACCAATGAAAGAAATCGTCTGGAA 58.930 37.500 0.00 0.00 36.40 3.53
83 84 5.711976 ACCAATGAAAGAAATCGTCTGGAAT 59.288 36.000 0.00 0.00 36.40 3.01
84 85 6.032094 CCAATGAAAGAAATCGTCTGGAATG 58.968 40.000 0.00 0.00 36.40 2.67
103 104 6.374053 TGGAATGAAAGTCGATTTGATGCTAA 59.626 34.615 0.00 0.00 0.00 3.09
106 107 6.122850 TGAAAGTCGATTTGATGCTAATGG 57.877 37.500 0.00 0.00 0.00 3.16
111 112 5.757320 AGTCGATTTGATGCTAATGGAGAAG 59.243 40.000 0.00 0.00 0.00 2.85
115 116 3.459232 TGATGCTAATGGAGAAGTCGG 57.541 47.619 0.00 0.00 0.00 4.79
122 123 3.533606 AATGGAGAAGTCGGTGAGATG 57.466 47.619 0.00 0.00 0.00 2.90
126 128 3.254892 GGAGAAGTCGGTGAGATGTTTC 58.745 50.000 0.00 0.00 0.00 2.78
135 137 4.690748 TCGGTGAGATGTTTCAGTGAAATC 59.309 41.667 20.72 14.90 33.97 2.17
136 138 4.452114 CGGTGAGATGTTTCAGTGAAATCA 59.548 41.667 20.72 18.76 33.97 2.57
137 139 5.390251 CGGTGAGATGTTTCAGTGAAATCAG 60.390 44.000 20.72 6.67 33.97 2.90
138 140 5.106396 GGTGAGATGTTTCAGTGAAATCAGG 60.106 44.000 20.72 0.00 33.97 3.86
139 141 5.005740 TGAGATGTTTCAGTGAAATCAGGG 58.994 41.667 20.72 0.00 33.97 4.45
160 162 1.134788 CGTCACCCTTAGATGGACACC 60.135 57.143 0.00 0.00 0.00 4.16
161 163 1.134788 GTCACCCTTAGATGGACACCG 60.135 57.143 0.00 0.00 0.00 4.94
162 164 0.902531 CACCCTTAGATGGACACCGT 59.097 55.000 0.00 0.00 0.00 4.83
180 182 2.420022 CCGTGGATTGATGGTGAAAGTC 59.580 50.000 0.00 0.00 0.00 3.01
185 187 3.561725 GGATTGATGGTGAAAGTCGATCC 59.438 47.826 5.39 5.39 42.61 3.36
192 194 7.827701 TGATGGTGAAAGTCGATCCTATATAC 58.172 38.462 0.00 0.00 0.00 1.47
229 231 6.817765 TCGAAGAAAGGATAAACAAGCAAT 57.182 33.333 0.00 0.00 0.00 3.56
256 258 3.092334 ACCTTGCGAAACAAATCCAAC 57.908 42.857 0.00 0.00 37.96 3.77
281 283 3.879295 AGTTGTGAGTTCAAGACACATGG 59.121 43.478 0.00 0.00 42.65 3.66
294 296 2.436646 CATGGTGTGCCGAGGTCC 60.437 66.667 0.00 0.00 37.67 4.46
296 298 2.525124 ATGGTGTGCCGAGGTCCAA 61.525 57.895 0.00 0.00 37.67 3.53
301 303 1.749258 GTGCCGAGGTCCAAATCCC 60.749 63.158 0.00 0.00 0.00 3.85
309 311 3.435026 CGAGGTCCAAATCCCCAATACAT 60.435 47.826 0.00 0.00 0.00 2.29
313 315 4.277476 GTCCAAATCCCCAATACATGTGA 58.723 43.478 9.11 0.00 0.00 3.58
321 323 3.131046 CCCCAATACATGTGAAAAGCTCC 59.869 47.826 9.11 0.00 0.00 4.70
322 324 3.181497 CCCAATACATGTGAAAAGCTCCG 60.181 47.826 9.11 0.00 0.00 4.63
339 341 0.947244 CCGCCTCATGCCTTATGAAC 59.053 55.000 0.00 0.00 44.84 3.18
348 350 6.260936 CCTCATGCCTTATGAACTTTATTCGT 59.739 38.462 0.00 0.00 44.84 3.85
357 359 5.080969 TGAACTTTATTCGTTCGAGGGAT 57.919 39.130 0.00 0.00 42.73 3.85
365 367 3.173668 TCGTTCGAGGGATTACAATGG 57.826 47.619 0.00 0.00 0.00 3.16
385 387 8.884323 ACAATGGTGAGTATATTCTATGGTGAT 58.116 33.333 0.00 0.00 0.00 3.06
402 404 1.137675 TGATGGTGCTCCTCAAGATCG 59.862 52.381 6.34 0.00 34.23 3.69
419 421 2.134201 TCGATGTGACGGTCATATGC 57.866 50.000 22.67 13.64 27.98 3.14
426 428 0.384309 GACGGTCATATGCGTCTCCA 59.616 55.000 21.44 0.00 31.15 3.86
441 443 2.482721 GTCTCCAACACGGTATGGTTTG 59.517 50.000 10.79 4.91 37.94 2.93
442 444 2.369203 TCTCCAACACGGTATGGTTTGA 59.631 45.455 10.79 6.60 37.94 2.69
443 445 3.008594 TCTCCAACACGGTATGGTTTGAT 59.991 43.478 10.79 0.00 37.94 2.57
446 448 4.585162 TCCAACACGGTATGGTTTGATTTT 59.415 37.500 10.79 0.00 37.94 1.82
447 449 4.920927 CCAACACGGTATGGTTTGATTTTC 59.079 41.667 4.43 0.00 31.84 2.29
448 450 5.508153 CCAACACGGTATGGTTTGATTTTCA 60.508 40.000 4.43 0.00 31.84 2.69
455 458 6.172630 GGTATGGTTTGATTTTCATGGCTTT 58.827 36.000 0.00 0.00 0.00 3.51
457 460 6.563222 ATGGTTTGATTTTCATGGCTTTTG 57.437 33.333 0.00 0.00 0.00 2.44
461 464 6.427547 GGTTTGATTTTCATGGCTTTTGATGA 59.572 34.615 0.00 0.00 0.00 2.92
469 472 4.696402 TCATGGCTTTTGATGAATTTTGGC 59.304 37.500 0.00 0.00 0.00 4.52
489 492 7.744087 TTGGCTGATCATATGTTGTTATACC 57.256 36.000 1.90 0.00 0.00 2.73
490 493 6.237901 TGGCTGATCATATGTTGTTATACCC 58.762 40.000 1.90 0.00 0.00 3.69
491 494 5.648092 GGCTGATCATATGTTGTTATACCCC 59.352 44.000 1.90 0.00 0.00 4.95
492 495 6.237901 GCTGATCATATGTTGTTATACCCCA 58.762 40.000 1.90 0.00 0.00 4.96
493 496 6.714810 GCTGATCATATGTTGTTATACCCCAA 59.285 38.462 1.90 0.00 0.00 4.12
494 497 7.230510 GCTGATCATATGTTGTTATACCCCAAA 59.769 37.037 1.90 0.00 0.00 3.28
500 503 8.744652 CATATGTTGTTATACCCCAAAAGTGAA 58.255 33.333 0.00 0.00 0.00 3.18
538 541 4.635765 ACACATCATATTTGGAACCTCACG 59.364 41.667 0.00 0.00 0.00 4.35
542 545 3.262151 TCATATTTGGAACCTCACGTCCA 59.738 43.478 0.00 0.00 0.00 4.02
553 558 1.001048 CTCACGTCCAAACACCGTCTA 60.001 52.381 0.00 0.00 31.46 2.59
557 562 2.298163 ACGTCCAAACACCGTCTATCTT 59.702 45.455 0.00 0.00 0.00 2.40
558 563 3.243975 ACGTCCAAACACCGTCTATCTTT 60.244 43.478 0.00 0.00 0.00 2.52
608 613 0.250209 AGCATTGCTCGGATGGCTAG 60.250 55.000 5.03 0.00 30.62 3.42
617 622 3.991121 GCTCGGATGGCTAGATTTCTTAC 59.009 47.826 0.00 0.00 0.00 2.34
620 625 3.243771 CGGATGGCTAGATTTCTTACGGT 60.244 47.826 0.00 0.00 0.00 4.83
621 626 4.058817 GGATGGCTAGATTTCTTACGGTG 58.941 47.826 0.00 0.00 0.00 4.94
622 627 3.536956 TGGCTAGATTTCTTACGGTGG 57.463 47.619 0.00 0.00 0.00 4.61
632 637 1.296056 CTTACGGTGGAACTTGCCCG 61.296 60.000 8.12 8.12 45.72 6.13
664 669 4.143986 AGTCCTAAACTTGGCATAGAGC 57.856 45.455 0.00 0.00 37.47 4.09
667 672 6.913009 AGTCCTAAACTTGGCATAGAGCGAT 61.913 44.000 0.00 0.00 38.73 4.58
668 673 8.622520 AGTCCTAAACTTGGCATAGAGCGATC 62.623 46.154 0.00 0.00 38.73 3.69
676 681 3.259207 GCATAGAGCGATCGCATTTTT 57.741 42.857 38.60 20.44 44.88 1.94
699 704 6.457851 TCTCGATTTATTTCAGATGATGCG 57.542 37.500 0.00 0.00 0.00 4.73
701 706 7.145323 TCTCGATTTATTTCAGATGATGCGTA 58.855 34.615 0.00 0.00 0.00 4.42
702 707 7.105494 TCGATTTATTTCAGATGATGCGTAC 57.895 36.000 0.00 0.00 0.00 3.67
705 710 5.635549 TTATTTCAGATGATGCGTACGTG 57.364 39.130 17.90 5.27 0.00 4.49
706 711 2.647529 TTCAGATGATGCGTACGTGT 57.352 45.000 17.90 5.64 0.00 4.49
708 713 3.982576 TCAGATGATGCGTACGTGTAT 57.017 42.857 17.90 9.18 0.00 2.29
709 714 5.427036 TTCAGATGATGCGTACGTGTATA 57.573 39.130 17.90 0.52 0.00 1.47
710 715 4.779987 TCAGATGATGCGTACGTGTATAC 58.220 43.478 17.90 5.43 0.00 1.47
725 730 5.541766 GTGTATACGAGCGTCTACATTTG 57.458 43.478 19.34 0.00 39.00 2.32
726 731 5.032863 GTGTATACGAGCGTCTACATTTGT 58.967 41.667 19.34 0.00 39.00 2.83
733 738 3.318017 AGCGTCTACATTTGTGTCTGTC 58.682 45.455 0.00 0.00 0.00 3.51
734 739 3.005897 AGCGTCTACATTTGTGTCTGTCT 59.994 43.478 0.00 0.00 0.00 3.41
740 745 3.123804 ACATTTGTGTCTGTCTCGTGTC 58.876 45.455 0.00 0.00 0.00 3.67
784 790 8.582657 TTATCCAAAAATTCAAATCCGGTCTA 57.417 30.769 0.00 0.00 0.00 2.59
785 791 6.509418 TCCAAAAATTCAAATCCGGTCTAG 57.491 37.500 0.00 0.00 0.00 2.43
806 817 8.650714 GTCTAGAAAAATCAAATCCAAATGCAC 58.349 33.333 0.00 0.00 0.00 4.57
966 977 0.955919 CTCTCCCGAACCCTGCAAAC 60.956 60.000 0.00 0.00 0.00 2.93
967 978 1.073199 CTCCCGAACCCTGCAAACT 59.927 57.895 0.00 0.00 0.00 2.66
968 979 1.228124 TCCCGAACCCTGCAAACTG 60.228 57.895 0.00 0.00 0.00 3.16
969 980 2.644992 CCGAACCCTGCAAACTGC 59.355 61.111 0.00 0.00 45.29 4.40
1094 1105 1.248101 CCAAGCCCAAACCCTAACCG 61.248 60.000 0.00 0.00 0.00 4.44
1100 1111 1.017701 CCAAACCCTAACCGTCGCTC 61.018 60.000 0.00 0.00 0.00 5.03
1280 1294 1.615165 GGAACCCCTTCGACCTCCTC 61.615 65.000 0.00 0.00 0.00 3.71
1281 1295 1.946475 GAACCCCTTCGACCTCCTCG 61.946 65.000 0.00 0.00 44.44 4.63
1359 1373 4.571176 CCACTCTTCGCTAGGGTTTAATTC 59.429 45.833 6.70 0.00 34.47 2.17
1673 1689 4.451096 TCCGTTTGTTGATTGAGAGTTAGC 59.549 41.667 0.00 0.00 0.00 3.09
1803 1829 2.388735 ACCTCATTCATGCCTAGTCGA 58.611 47.619 0.00 0.00 0.00 4.20
1804 1830 2.766263 ACCTCATTCATGCCTAGTCGAA 59.234 45.455 0.00 0.00 0.00 3.71
1805 1831 3.389329 ACCTCATTCATGCCTAGTCGAAT 59.611 43.478 0.00 0.00 0.00 3.34
1806 1832 4.141620 ACCTCATTCATGCCTAGTCGAATT 60.142 41.667 0.00 0.00 0.00 2.17
1807 1833 5.070446 ACCTCATTCATGCCTAGTCGAATTA 59.930 40.000 0.00 0.00 0.00 1.40
1808 1834 6.169094 CCTCATTCATGCCTAGTCGAATTAT 58.831 40.000 0.00 0.00 0.00 1.28
1809 1835 6.312426 CCTCATTCATGCCTAGTCGAATTATC 59.688 42.308 0.00 0.00 0.00 1.75
1880 1906 2.933056 GCTTACTCCACTGCAGGAAGAC 60.933 54.545 19.93 4.62 34.06 3.01
1917 1943 6.531594 TGATCAAACTGCGAGTTATACAGAAG 59.468 38.462 0.00 0.00 37.47 2.85
1949 1975 3.547746 TGTGAAAAAGAAGCCTAACGGT 58.452 40.909 0.00 0.00 0.00 4.83
2093 2119 2.037511 TGAAAAGAGGCCCATGCAAAAG 59.962 45.455 0.00 0.00 40.13 2.27
2171 2197 2.111384 GCTGGGACATCCTCAGTTCTA 58.889 52.381 14.26 0.00 38.20 2.10
2321 2347 2.439507 TGCTGGCCTTAATCCTAGAAGG 59.560 50.000 3.32 3.99 44.40 3.46
2659 2690 7.547697 TCCATTATCCATAATTAGTGGTCGA 57.452 36.000 11.39 0.00 37.96 4.20
2875 2906 1.275856 TGGATTGTTTGGCTTGGCATC 59.724 47.619 0.00 0.00 0.00 3.91
2903 2934 4.343526 TGGCACATCACTAATTTGTTTGGT 59.656 37.500 0.00 0.00 0.00 3.67
2965 3004 3.299340 TGTTCTTCGTGTAGGAAGCTC 57.701 47.619 8.94 5.86 42.48 4.09
4017 4057 2.912956 ACCTCAGTTGAATCCTGCCTAA 59.087 45.455 0.00 0.00 0.00 2.69
4020 4060 2.912956 TCAGTTGAATCCTGCCTAACCT 59.087 45.455 0.00 0.00 0.00 3.50
4134 4175 9.608617 GAAGCTTGGTTTAGTTTAAACTATGAC 57.391 33.333 24.89 23.29 45.53 3.06
4161 4202 8.294577 CCAACCAGTTTACCTTTTATGAAGTAC 58.705 37.037 0.00 0.00 0.00 2.73
4162 4203 9.063615 CAACCAGTTTACCTTTTATGAAGTACT 57.936 33.333 0.00 0.00 0.00 2.73
4163 4204 8.843885 ACCAGTTTACCTTTTATGAAGTACTC 57.156 34.615 0.00 0.00 0.00 2.59
4164 4205 7.881751 ACCAGTTTACCTTTTATGAAGTACTCC 59.118 37.037 0.00 0.00 0.00 3.85
4165 4206 7.336176 CCAGTTTACCTTTTATGAAGTACTCCC 59.664 40.741 0.00 0.00 0.00 4.30
4166 4207 8.101419 CAGTTTACCTTTTATGAAGTACTCCCT 58.899 37.037 0.00 0.00 0.00 4.20
4167 4208 8.319881 AGTTTACCTTTTATGAAGTACTCCCTC 58.680 37.037 0.00 0.00 0.00 4.30
4168 4209 5.695424 ACCTTTTATGAAGTACTCCCTCC 57.305 43.478 0.00 0.00 0.00 4.30
4169 4210 4.161754 ACCTTTTATGAAGTACTCCCTCCG 59.838 45.833 0.00 0.00 0.00 4.63
4170 4211 4.161754 CCTTTTATGAAGTACTCCCTCCGT 59.838 45.833 0.00 0.00 0.00 4.69
4171 4212 5.338137 CCTTTTATGAAGTACTCCCTCCGTT 60.338 44.000 0.00 0.00 0.00 4.44
4172 4213 4.996788 TTATGAAGTACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
4173 4214 1.553706 TGAAGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
4174 4215 1.203087 TGAAGTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
4175 4216 1.897802 GAAGTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
4176 4217 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4177 4218 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
4178 4219 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
4179 4220 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
4180 4221 3.629142 ACTCCCTCCGTTCCAAATTAG 57.371 47.619 0.00 0.00 0.00 1.73
4181 4222 2.910977 ACTCCCTCCGTTCCAAATTAGT 59.089 45.455 0.00 0.00 0.00 2.24
4182 4223 3.329814 ACTCCCTCCGTTCCAAATTAGTT 59.670 43.478 0.00 0.00 0.00 2.24
4183 4224 3.681593 TCCCTCCGTTCCAAATTAGTTG 58.318 45.455 0.00 0.00 36.94 3.16
4184 4225 3.328343 TCCCTCCGTTCCAAATTAGTTGA 59.672 43.478 0.00 0.00 39.87 3.18
4185 4226 3.439129 CCCTCCGTTCCAAATTAGTTGAC 59.561 47.826 0.00 0.00 39.87 3.18
4186 4227 4.324267 CCTCCGTTCCAAATTAGTTGACT 58.676 43.478 0.00 0.00 39.87 3.41
4187 4228 4.760204 CCTCCGTTCCAAATTAGTTGACTT 59.240 41.667 0.00 0.00 39.87 3.01
4188 4229 5.334879 CCTCCGTTCCAAATTAGTTGACTTG 60.335 44.000 0.00 0.00 39.87 3.16
4189 4230 5.369833 TCCGTTCCAAATTAGTTGACTTGA 58.630 37.500 0.00 0.00 39.87 3.02
4190 4231 5.823570 TCCGTTCCAAATTAGTTGACTTGAA 59.176 36.000 0.00 0.00 39.87 2.69
4191 4232 6.488683 TCCGTTCCAAATTAGTTGACTTGAAT 59.511 34.615 0.00 0.00 39.87 2.57
4192 4233 7.013846 TCCGTTCCAAATTAGTTGACTTGAATT 59.986 33.333 0.00 0.00 39.87 2.17
4193 4234 7.651704 CCGTTCCAAATTAGTTGACTTGAATTT 59.348 33.333 0.00 0.00 39.87 1.82
4194 4235 8.479280 CGTTCCAAATTAGTTGACTTGAATTTG 58.521 33.333 17.35 17.35 43.82 2.32
4195 4236 9.313118 GTTCCAAATTAGTTGACTTGAATTTGT 57.687 29.630 20.10 0.00 43.18 2.83
4196 4237 9.528018 TTCCAAATTAGTTGACTTGAATTTGTC 57.472 29.630 20.10 0.00 43.18 3.18
4197 4238 8.912988 TCCAAATTAGTTGACTTGAATTTGTCT 58.087 29.630 20.10 0.00 43.18 3.41
4241 4282 7.481642 ACTTGTTTAGTGTCTAGATACATCCG 58.518 38.462 20.24 5.79 35.19 4.18
4242 4283 7.122353 ACTTGTTTAGTGTCTAGATACATCCGT 59.878 37.037 20.24 3.37 35.19 4.69
4243 4284 8.510243 TTGTTTAGTGTCTAGATACATCCGTA 57.490 34.615 20.24 2.45 0.00 4.02
4244 4285 8.687292 TGTTTAGTGTCTAGATACATCCGTAT 57.313 34.615 20.24 2.04 41.16 3.06
4260 4301 8.840200 ACATCCGTATCTAGATAAATATGGGT 57.160 34.615 14.09 2.86 35.88 4.51
4261 4302 8.915036 ACATCCGTATCTAGATAAATATGGGTC 58.085 37.037 14.09 0.00 35.88 4.46
4262 4303 8.914011 CATCCGTATCTAGATAAATATGGGTCA 58.086 37.037 14.09 0.00 35.88 4.02
4263 4304 8.888836 TCCGTATCTAGATAAATATGGGTCAA 57.111 34.615 14.09 0.00 35.88 3.18
4264 4305 8.967918 TCCGTATCTAGATAAATATGGGTCAAG 58.032 37.037 14.09 0.00 35.88 3.02
4265 4306 7.707035 CCGTATCTAGATAAATATGGGTCAAGC 59.293 40.741 14.09 0.00 32.90 4.01
4266 4307 8.251026 CGTATCTAGATAAATATGGGTCAAGCA 58.749 37.037 14.09 0.00 0.00 3.91
4267 4308 9.944376 GTATCTAGATAAATATGGGTCAAGCAA 57.056 33.333 14.09 0.00 0.00 3.91
4270 4311 9.866655 TCTAGATAAATATGGGTCAAGCAATTT 57.133 29.630 0.00 0.00 0.00 1.82
4271 4312 9.903682 CTAGATAAATATGGGTCAAGCAATTTG 57.096 33.333 0.00 0.00 38.17 2.32
4272 4313 7.729116 AGATAAATATGGGTCAAGCAATTTGG 58.271 34.615 0.00 0.00 37.39 3.28
4273 4314 7.564660 AGATAAATATGGGTCAAGCAATTTGGA 59.435 33.333 0.00 0.00 37.39 3.53
4274 4315 6.371595 AAATATGGGTCAAGCAATTTGGAA 57.628 33.333 0.00 0.00 37.39 3.53
4275 4316 6.564557 AATATGGGTCAAGCAATTTGGAAT 57.435 33.333 0.00 0.00 37.39 3.01
4276 4317 3.681593 TGGGTCAAGCAATTTGGAATG 57.318 42.857 0.00 0.00 37.39 2.67
4277 4318 2.302445 TGGGTCAAGCAATTTGGAATGG 59.698 45.455 0.00 0.00 37.39 3.16
4278 4319 2.566724 GGGTCAAGCAATTTGGAATGGA 59.433 45.455 0.00 0.00 37.39 3.41
4279 4320 3.368739 GGGTCAAGCAATTTGGAATGGAG 60.369 47.826 0.00 0.00 37.39 3.86
4280 4321 3.368739 GGTCAAGCAATTTGGAATGGAGG 60.369 47.826 0.00 0.00 37.39 4.30
4281 4322 2.833338 TCAAGCAATTTGGAATGGAGGG 59.167 45.455 0.00 0.00 37.39 4.30
4282 4323 2.833338 CAAGCAATTTGGAATGGAGGGA 59.167 45.455 0.00 0.00 32.95 4.20
4283 4324 2.743553 AGCAATTTGGAATGGAGGGAG 58.256 47.619 0.00 0.00 0.00 4.30
4284 4325 2.043526 AGCAATTTGGAATGGAGGGAGT 59.956 45.455 0.00 0.00 0.00 3.85
4285 4326 3.269381 AGCAATTTGGAATGGAGGGAGTA 59.731 43.478 0.00 0.00 0.00 2.59
4479 4522 8.365647 TCGAGAGAAAGATAGTTTAGTTTTGGT 58.634 33.333 0.00 0.00 37.03 3.67
4672 4717 2.646175 CCCTCCGGAAGAACTGCGA 61.646 63.158 5.23 0.00 42.35 5.10
4937 4982 1.418334 CGGAATCAGTGATCCTCCCT 58.582 55.000 15.37 0.00 0.00 4.20
4958 5003 2.610433 TGTGTCTGCGATGCTTAAGAG 58.390 47.619 6.67 0.00 0.00 2.85
4988 5033 1.444119 TAATCGCTTGCGAATGCCCC 61.444 55.000 21.35 0.00 41.78 5.80
5016 5061 1.714541 TTTCATGGCCTTGGCAAAGA 58.285 45.000 17.95 1.61 42.43 2.52
5039 5084 8.753497 AGATTATACATGTATAGCTGATCCGA 57.247 34.615 21.65 7.83 30.53 4.55
5041 5086 9.404348 GATTATACATGTATAGCTGATCCGATG 57.596 37.037 21.65 0.00 30.53 3.84
5109 5154 7.952930 AGAGTCCATGTACCATCATTACTAGAT 59.047 37.037 0.00 0.00 0.00 1.98
5150 5195 2.582978 GGCCCGTTAGGTCAGGTC 59.417 66.667 0.00 0.00 41.40 3.85
5151 5196 2.288025 GGCCCGTTAGGTCAGGTCA 61.288 63.158 0.00 0.00 41.40 4.02
5153 5198 1.542187 GCCCGTTAGGTCAGGTCACT 61.542 60.000 0.00 0.00 38.26 3.41
5154 5199 0.246635 CCCGTTAGGTCAGGTCACTG 59.753 60.000 0.00 0.00 39.36 3.66
5155 5200 0.389948 CCGTTAGGTCAGGTCACTGC 60.390 60.000 0.00 0.00 44.54 4.40
5156 5201 0.317160 CGTTAGGTCAGGTCACTGCA 59.683 55.000 0.00 0.00 44.54 4.41
5257 5318 5.478679 TCTCTCCTTGTACTTGGAAGAGAAG 59.521 44.000 20.25 5.96 35.64 2.85
5258 5319 4.021016 TCTCCTTGTACTTGGAAGAGAAGC 60.021 45.833 8.37 0.00 31.23 3.86
5284 5345 3.395639 CAGTTTGGAACATTTGCATGCT 58.604 40.909 20.33 0.00 39.30 3.79
5298 5359 3.648179 GCATGCTAGTATATGCTTCGC 57.352 47.619 11.37 3.45 44.70 4.70
5305 5366 3.113260 AGTATATGCTTCGCTGTTCCC 57.887 47.619 0.00 0.00 0.00 3.97
5357 5424 8.648557 TGTACTATGCAACTTCACTATCATTC 57.351 34.615 0.00 0.00 0.00 2.67
5547 5614 4.605640 TGGAAAGGCAAAAAGATTCTGG 57.394 40.909 0.00 0.00 0.00 3.86
5557 5624 4.873746 AAAAGATTCTGGAGACGAGTGA 57.126 40.909 0.00 0.00 0.00 3.41
5608 5892 1.026718 CCGTTTCCTGATCTGGTGGC 61.027 60.000 17.33 8.30 0.00 5.01
5611 5895 1.815003 GTTTCCTGATCTGGTGGCTTG 59.185 52.381 17.33 0.00 0.00 4.01
5641 5925 1.544686 CCACAGTTTGTTTGTCGCAC 58.455 50.000 0.00 0.00 0.00 5.34
5645 5929 1.942223 GTTTGTTTGTCGCACCGCC 60.942 57.895 0.00 0.00 0.00 6.13
5646 5930 2.115911 TTTGTTTGTCGCACCGCCT 61.116 52.632 0.00 0.00 0.00 5.52
5647 5931 2.329678 TTTGTTTGTCGCACCGCCTG 62.330 55.000 0.00 0.00 0.00 4.85
5649 5933 4.243008 TTTGTCGCACCGCCTGGA 62.243 61.111 0.00 0.00 39.21 3.86
5650 5934 3.545124 TTTGTCGCACCGCCTGGAT 62.545 57.895 0.00 0.00 39.21 3.41
5651 5935 2.173758 TTTGTCGCACCGCCTGGATA 62.174 55.000 0.00 0.00 39.21 2.59
5652 5936 1.966901 TTGTCGCACCGCCTGGATAT 61.967 55.000 0.00 0.00 39.21 1.63
5653 5937 1.956170 GTCGCACCGCCTGGATATG 60.956 63.158 0.00 0.00 39.21 1.78
5654 5938 2.666190 CGCACCGCCTGGATATGG 60.666 66.667 0.00 0.00 39.21 2.74
5655 5939 2.980233 GCACCGCCTGGATATGGC 60.980 66.667 0.00 0.00 46.42 4.40
5759 6064 6.264518 TGGAGTTTATTCAGTGGACCTTTTTC 59.735 38.462 0.00 0.00 0.00 2.29
5760 6065 6.264518 GGAGTTTATTCAGTGGACCTTTTTCA 59.735 38.462 0.00 0.00 0.00 2.69
5761 6066 7.039714 GGAGTTTATTCAGTGGACCTTTTTCAT 60.040 37.037 0.00 0.00 0.00 2.57
5762 6067 7.661040 AGTTTATTCAGTGGACCTTTTTCATG 58.339 34.615 0.00 0.00 0.00 3.07
5764 6069 8.573035 GTTTATTCAGTGGACCTTTTTCATGTA 58.427 33.333 0.00 0.00 0.00 2.29
5765 6070 6.575162 ATTCAGTGGACCTTTTTCATGTAC 57.425 37.500 0.00 0.00 0.00 2.90
5840 9463 9.930693 ATCTCTTAACGGATGGAGTAATTTATC 57.069 33.333 0.00 0.00 0.00 1.75
5846 9469 4.932200 CGGATGGAGTAATTTATCTGCCTC 59.068 45.833 0.00 0.00 0.00 4.70
5876 9499 6.942532 ACCTGATGCACAAATTATTATCGT 57.057 33.333 0.00 0.00 0.00 3.73
5877 9500 6.728200 ACCTGATGCACAAATTATTATCGTG 58.272 36.000 0.00 0.00 0.00 4.35
5884 9507 5.004345 GCACAAATTATTATCGTGCCAACAC 59.996 40.000 12.91 0.00 45.57 3.32
5905 9528 3.246936 ACGAAAGTAAGTTTTCCGAGTGC 59.753 43.478 0.00 0.00 46.88 4.40
5925 9548 4.561735 GCGCCTAGCCATGTTTATAAAA 57.438 40.909 0.00 0.00 40.81 1.52
5999 9645 7.656542 TCATACCGTGTGTGATAAACAAACTTA 59.343 33.333 0.00 0.00 43.89 2.24
6002 9648 5.910723 CCGTGTGTGATAAACAAACTTAACC 59.089 40.000 0.00 0.00 43.89 2.85
6017 9663 3.247442 CTTAACCGCGTCACTTGTATCA 58.753 45.455 4.92 0.00 0.00 2.15
6083 9733 6.925165 CCATGGAGATTTTTATATGTTGTGCC 59.075 38.462 5.56 0.00 0.00 5.01
6097 9747 5.816449 TGTTGTGCCATCAGTATTATGTG 57.184 39.130 0.00 0.00 0.00 3.21
6119 9769 6.040278 TGTGAATCAGATTGGCAAAGTTTACA 59.960 34.615 3.01 5.63 0.00 2.41
6127 9777 8.915654 CAGATTGGCAAAGTTTACAAAAGATAC 58.084 33.333 3.01 0.00 0.00 2.24
6221 9872 6.587206 ACTAAAGCTAGACTCCTTTTACGT 57.413 37.500 0.00 0.00 33.64 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.341482 TGGGAAAAGCACTCACAACCA 60.341 47.619 0.00 0.00 0.00 3.67
1 2 1.398692 TGGGAAAAGCACTCACAACC 58.601 50.000 0.00 0.00 0.00 3.77
2 3 5.066505 CCTATATGGGAAAAGCACTCACAAC 59.933 44.000 0.00 0.00 27.92 3.32
3 4 5.045213 TCCTATATGGGAAAAGCACTCACAA 60.045 40.000 5.13 0.00 36.20 3.33
4 5 4.473196 TCCTATATGGGAAAAGCACTCACA 59.527 41.667 5.13 0.00 36.20 3.58
5 6 5.036117 TCCTATATGGGAAAAGCACTCAC 57.964 43.478 5.13 0.00 36.20 3.51
32 33 0.032017 ATGAGGGCTTCTAGGACGGT 60.032 55.000 0.00 0.00 0.00 4.83
33 34 0.676736 GATGAGGGCTTCTAGGACGG 59.323 60.000 0.00 0.00 0.00 4.79
34 35 1.339610 CTGATGAGGGCTTCTAGGACG 59.660 57.143 0.00 0.00 0.00 4.79
38 39 5.070981 TGGTTTATCTGATGAGGGCTTCTAG 59.929 44.000 0.00 0.00 0.00 2.43
44 45 4.464008 TCATTGGTTTATCTGATGAGGGC 58.536 43.478 0.00 0.00 0.00 5.19
45 46 6.830324 TCTTTCATTGGTTTATCTGATGAGGG 59.170 38.462 0.00 0.00 0.00 4.30
53 54 8.454106 CAGACGATTTCTTTCATTGGTTTATCT 58.546 33.333 0.00 0.00 28.96 1.98
60 61 5.627499 TTCCAGACGATTTCTTTCATTGG 57.373 39.130 0.00 0.00 28.96 3.16
69 70 4.625742 TCGACTTTCATTCCAGACGATTTC 59.374 41.667 0.00 0.00 33.33 2.17
70 71 4.566004 TCGACTTTCATTCCAGACGATTT 58.434 39.130 0.00 0.00 33.33 2.17
72 73 3.868757 TCGACTTTCATTCCAGACGAT 57.131 42.857 0.00 0.00 33.33 3.73
73 74 3.868757 ATCGACTTTCATTCCAGACGA 57.131 42.857 0.00 0.00 40.52 4.20
74 75 4.388773 TCAAATCGACTTTCATTCCAGACG 59.611 41.667 0.00 0.00 0.00 4.18
75 76 5.862924 TCAAATCGACTTTCATTCCAGAC 57.137 39.130 0.00 0.00 0.00 3.51
76 77 5.163723 GCATCAAATCGACTTTCATTCCAGA 60.164 40.000 0.00 0.00 0.00 3.86
77 78 5.032863 GCATCAAATCGACTTTCATTCCAG 58.967 41.667 0.00 0.00 0.00 3.86
78 79 4.701651 AGCATCAAATCGACTTTCATTCCA 59.298 37.500 0.00 0.00 0.00 3.53
80 81 7.377928 CCATTAGCATCAAATCGACTTTCATTC 59.622 37.037 0.00 0.00 0.00 2.67
81 82 7.067372 TCCATTAGCATCAAATCGACTTTCATT 59.933 33.333 0.00 0.00 0.00 2.57
82 83 6.543465 TCCATTAGCATCAAATCGACTTTCAT 59.457 34.615 0.00 0.00 0.00 2.57
83 84 5.879777 TCCATTAGCATCAAATCGACTTTCA 59.120 36.000 0.00 0.00 0.00 2.69
84 85 6.258727 TCTCCATTAGCATCAAATCGACTTTC 59.741 38.462 0.00 0.00 0.00 2.62
103 104 2.461695 ACATCTCACCGACTTCTCCAT 58.538 47.619 0.00 0.00 0.00 3.41
106 107 3.914312 TGAAACATCTCACCGACTTCTC 58.086 45.455 0.00 0.00 0.00 2.87
111 112 3.026630 TCACTGAAACATCTCACCGAC 57.973 47.619 0.00 0.00 0.00 4.79
115 116 5.106396 CCCTGATTTCACTGAAACATCTCAC 60.106 44.000 6.35 0.00 34.23 3.51
122 123 1.880027 ACGCCCTGATTTCACTGAAAC 59.120 47.619 6.35 2.54 34.23 2.78
126 128 0.798776 GTGACGCCCTGATTTCACTG 59.201 55.000 0.00 0.00 36.29 3.66
138 140 0.179081 GTCCATCTAAGGGTGACGCC 60.179 60.000 0.00 0.00 0.00 5.68
139 141 0.535335 TGTCCATCTAAGGGTGACGC 59.465 55.000 0.00 0.00 0.00 5.19
152 154 1.408683 CCATCAATCCACGGTGTCCAT 60.409 52.381 7.45 0.00 0.00 3.41
160 162 2.094258 CGACTTTCACCATCAATCCACG 59.906 50.000 0.00 0.00 0.00 4.94
161 163 3.334691 TCGACTTTCACCATCAATCCAC 58.665 45.455 0.00 0.00 0.00 4.02
162 164 3.694043 TCGACTTTCACCATCAATCCA 57.306 42.857 0.00 0.00 0.00 3.41
202 204 8.142994 TGCTTGTTTATCCTTTCTTCGATATC 57.857 34.615 0.00 0.00 0.00 1.63
212 214 8.088365 GGTTCTTGTATTGCTTGTTTATCCTTT 58.912 33.333 0.00 0.00 0.00 3.11
221 223 3.304659 CGCAAGGTTCTTGTATTGCTTGT 60.305 43.478 9.07 0.00 44.51 3.16
222 224 3.058293 TCGCAAGGTTCTTGTATTGCTTG 60.058 43.478 9.07 0.00 44.51 4.01
224 226 2.778299 TCGCAAGGTTCTTGTATTGCT 58.222 42.857 9.07 0.00 44.51 3.91
229 231 4.966965 TTTGTTTCGCAAGGTTCTTGTA 57.033 36.364 9.07 0.00 38.47 2.41
256 258 2.540101 GTGTCTTGAACTCACAACTCCG 59.460 50.000 0.00 0.00 33.04 4.63
281 283 1.305930 GGATTTGGACCTCGGCACAC 61.306 60.000 0.00 0.00 0.00 3.82
288 290 3.662759 TGTATTGGGGATTTGGACCTC 57.337 47.619 0.00 0.00 0.00 3.85
294 296 5.581874 GCTTTTCACATGTATTGGGGATTTG 59.418 40.000 0.00 0.00 0.00 2.32
296 298 5.025453 AGCTTTTCACATGTATTGGGGATT 58.975 37.500 0.00 0.00 0.00 3.01
301 303 4.019919 CGGAGCTTTTCACATGTATTGG 57.980 45.455 0.00 0.00 0.00 3.16
321 323 1.959042 AGTTCATAAGGCATGAGGCG 58.041 50.000 0.00 0.00 44.47 5.52
322 324 6.396829 AATAAAGTTCATAAGGCATGAGGC 57.603 37.500 0.00 0.00 44.47 4.70
339 341 6.897259 TTGTAATCCCTCGAACGAATAAAG 57.103 37.500 0.00 0.00 0.00 1.85
348 350 3.517901 ACTCACCATTGTAATCCCTCGAA 59.482 43.478 0.00 0.00 0.00 3.71
357 359 9.996554 CACCATAGAATATACTCACCATTGTAA 57.003 33.333 0.00 0.00 0.00 2.41
365 367 6.591834 GCACCATCACCATAGAATATACTCAC 59.408 42.308 0.00 0.00 0.00 3.51
385 387 1.137675 CATCGATCTTGAGGAGCACCA 59.862 52.381 2.07 0.00 38.94 4.17
402 404 1.852942 ACGCATATGACCGTCACATC 58.147 50.000 6.97 0.00 31.00 3.06
419 421 0.245539 ACCATACCGTGTTGGAGACG 59.754 55.000 8.82 0.00 42.00 4.18
426 428 5.776173 TGAAAATCAAACCATACCGTGTT 57.224 34.783 0.00 0.00 0.00 3.32
441 443 9.337091 CAAAATTCATCAAAAGCCATGAAAATC 57.663 29.630 0.00 0.00 41.28 2.17
442 444 8.301002 CCAAAATTCATCAAAAGCCATGAAAAT 58.699 29.630 0.00 0.00 41.28 1.82
443 445 7.649973 CCAAAATTCATCAAAAGCCATGAAAA 58.350 30.769 0.00 0.00 41.28 2.29
446 448 4.696402 GCCAAAATTCATCAAAAGCCATGA 59.304 37.500 0.00 0.00 0.00 3.07
447 449 4.698304 AGCCAAAATTCATCAAAAGCCATG 59.302 37.500 0.00 0.00 0.00 3.66
448 450 4.698304 CAGCCAAAATTCATCAAAAGCCAT 59.302 37.500 0.00 0.00 0.00 4.40
455 458 8.014070 ACATATGATCAGCCAAAATTCATCAA 57.986 30.769 10.38 0.00 0.00 2.57
457 460 7.924412 ACAACATATGATCAGCCAAAATTCATC 59.076 33.333 10.38 0.00 0.00 2.92
469 472 8.690203 TTTGGGGTATAACAACATATGATCAG 57.310 34.615 10.38 0.00 0.00 2.90
488 491 9.586435 GATGTAGATAAAATTTCACTTTTGGGG 57.414 33.333 0.00 0.00 31.15 4.96
509 512 7.345691 AGGTTCCAAATATGATGTGTGATGTA 58.654 34.615 0.00 0.00 0.00 2.29
538 541 6.592607 TGATAAAAGATAGACGGTGTTTGGAC 59.407 38.462 0.00 0.00 0.00 4.02
542 545 7.972832 TTGTGATAAAAGATAGACGGTGTTT 57.027 32.000 0.00 0.00 0.00 2.83
572 577 7.948357 AGCAATGCTCAATTCACACATATATT 58.052 30.769 0.00 0.00 30.62 1.28
573 578 7.520451 AGCAATGCTCAATTCACACATATAT 57.480 32.000 0.00 0.00 30.62 0.86
575 580 5.847111 AGCAATGCTCAATTCACACATAT 57.153 34.783 0.00 0.00 30.62 1.78
594 599 2.042464 AGAAATCTAGCCATCCGAGCA 58.958 47.619 0.00 0.00 0.00 4.26
595 600 2.829741 AGAAATCTAGCCATCCGAGC 57.170 50.000 0.00 0.00 0.00 5.03
608 613 3.119955 GGCAAGTTCCACCGTAAGAAATC 60.120 47.826 0.00 0.00 43.02 2.17
620 625 4.659172 CTGGGCGGGCAAGTTCCA 62.659 66.667 3.27 0.00 0.00 3.53
632 637 0.328258 TTTAGGACTTGAGCCTGGGC 59.672 55.000 3.00 3.00 42.33 5.36
661 666 1.588404 TCGAGAAAAATGCGATCGCTC 59.412 47.619 37.01 26.22 42.51 5.03
664 669 7.373180 TGAAATAAATCGAGAAAAATGCGATCG 59.627 33.333 11.69 11.69 43.19 3.69
667 672 7.747888 TCTGAAATAAATCGAGAAAAATGCGA 58.252 30.769 0.00 0.00 38.51 5.10
668 673 7.953305 TCTGAAATAAATCGAGAAAAATGCG 57.047 32.000 0.00 0.00 0.00 4.73
676 681 5.985530 ACGCATCATCTGAAATAAATCGAGA 59.014 36.000 0.00 0.00 0.00 4.04
699 704 3.242944 TGTAGACGCTCGTATACACGTAC 59.757 47.826 21.20 10.56 44.54 3.67
701 706 2.270923 TGTAGACGCTCGTATACACGT 58.729 47.619 21.20 13.47 44.54 4.49
705 710 5.032863 ACACAAATGTAGACGCTCGTATAC 58.967 41.667 17.17 17.17 41.55 1.47
706 711 5.065602 AGACACAAATGTAGACGCTCGTATA 59.934 40.000 0.00 0.00 39.95 1.47
708 713 3.189910 AGACACAAATGTAGACGCTCGTA 59.810 43.478 0.00 0.00 39.95 3.43
709 714 2.030185 AGACACAAATGTAGACGCTCGT 60.030 45.455 0.00 0.00 39.95 4.18
710 715 2.342651 CAGACACAAATGTAGACGCTCG 59.657 50.000 0.00 0.00 39.95 5.03
711 716 3.318017 ACAGACACAAATGTAGACGCTC 58.682 45.455 0.00 0.00 39.95 5.03
712 717 3.005897 AGACAGACACAAATGTAGACGCT 59.994 43.478 0.00 0.00 39.95 5.07
713 718 3.318017 AGACAGACACAAATGTAGACGC 58.682 45.455 0.00 0.00 39.95 5.19
714 719 3.604198 CGAGACAGACACAAATGTAGACG 59.396 47.826 0.00 0.00 39.95 4.18
715 720 4.383052 CACGAGACAGACACAAATGTAGAC 59.617 45.833 0.00 0.00 39.95 2.59
716 721 4.037565 ACACGAGACAGACACAAATGTAGA 59.962 41.667 0.00 0.00 39.95 2.59
717 722 4.299155 ACACGAGACAGACACAAATGTAG 58.701 43.478 0.00 0.00 39.95 2.74
718 723 4.037565 AGACACGAGACAGACACAAATGTA 59.962 41.667 0.00 0.00 39.95 2.29
719 724 3.123804 GACACGAGACAGACACAAATGT 58.876 45.455 0.00 0.00 43.71 2.71
721 726 3.319405 AGAGACACGAGACAGACACAAAT 59.681 43.478 0.00 0.00 0.00 2.32
725 730 2.417239 CCTAGAGACACGAGACAGACAC 59.583 54.545 0.00 0.00 0.00 3.67
726 731 2.302157 TCCTAGAGACACGAGACAGACA 59.698 50.000 0.00 0.00 0.00 3.41
761 767 6.889722 TCTAGACCGGATTTGAATTTTTGGAT 59.110 34.615 9.46 0.00 0.00 3.41
769 775 7.938140 TGATTTTTCTAGACCGGATTTGAAT 57.062 32.000 9.46 0.00 0.00 2.57
784 790 5.706833 GGGTGCATTTGGATTTGATTTTTCT 59.293 36.000 0.00 0.00 0.00 2.52
785 791 5.390779 CGGGTGCATTTGGATTTGATTTTTC 60.391 40.000 0.00 0.00 0.00 2.29
806 817 2.408022 CTAGTCGCTTCCGTCGGG 59.592 66.667 12.29 0.00 35.54 5.14
820 831 5.287674 TGGAATTCTTCTGATCCTGCTAG 57.712 43.478 5.23 0.00 33.02 3.42
824 835 5.008415 CGGAATTGGAATTCTTCTGATCCTG 59.992 44.000 5.23 0.96 43.33 3.86
867 878 6.235642 CGTTATTATTGCGTACGTGTTCTTT 58.764 36.000 17.90 0.00 0.00 2.52
968 979 0.179076 AGTGTTTTGCTGCCCTTTGC 60.179 50.000 0.00 0.00 41.77 3.68
969 980 1.856802 GAGTGTTTTGCTGCCCTTTG 58.143 50.000 0.00 0.00 0.00 2.77
970 981 0.385390 CGAGTGTTTTGCTGCCCTTT 59.615 50.000 0.00 0.00 0.00 3.11
971 982 0.751643 ACGAGTGTTTTGCTGCCCTT 60.752 50.000 0.00 0.00 0.00 3.95
972 983 1.152963 ACGAGTGTTTTGCTGCCCT 60.153 52.632 0.00 0.00 0.00 5.19
1110 1121 4.794439 CATGTCGACGGCTGCGGA 62.794 66.667 14.45 0.00 0.00 5.54
1115 1126 4.129737 CCGGACATGTCGACGGCT 62.130 66.667 24.39 0.00 39.85 5.52
1280 1294 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1281 1295 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
1282 1296 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
1342 1356 5.180271 ACAATCGAATTAAACCCTAGCGAA 58.820 37.500 0.00 0.00 0.00 4.70
1359 1373 5.734498 GCAGATAAGCAACAGTTTACAATCG 59.266 40.000 0.00 0.00 0.00 3.34
1673 1689 1.008538 GAGGCAAGCAAACACACGG 60.009 57.895 0.00 0.00 0.00 4.94
1880 1906 4.726021 GCAGTTTGATCAGTATGCACTTCG 60.726 45.833 18.01 0.00 34.76 3.79
1917 1943 8.084684 AGGCTTCTTTTTCACATATTGTTTCTC 58.915 33.333 0.00 0.00 0.00 2.87
1991 2017 3.062466 GGTTCCGCCTTGCCCTTC 61.062 66.667 0.00 0.00 0.00 3.46
2026 2052 3.198635 GTCCAGTGATTTCTCATCCCTCA 59.801 47.826 0.00 0.00 32.98 3.86
2093 2119 5.049198 TGCTCTGTCATTTTGATGAACACTC 60.049 40.000 0.00 0.00 31.60 3.51
2171 2197 4.346730 TGAGATGTTTGGGATCAATTGCT 58.653 39.130 0.00 0.00 32.28 3.91
2321 2347 3.385111 CAGGTGGAGATACAAGTAGGGTC 59.615 52.174 0.00 0.00 0.00 4.46
2631 2662 9.388506 GACCACTAATTATGGATAATGGATGAG 57.611 37.037 16.26 0.00 39.87 2.90
2659 2690 5.177696 GTCTACTCGCATGTTCAAAGAAACT 59.822 40.000 0.00 0.00 0.00 2.66
2836 2867 5.718724 TCCAAAACATGCATAATCACACA 57.281 34.783 0.00 0.00 0.00 3.72
2837 2868 6.591062 ACAATCCAAAACATGCATAATCACAC 59.409 34.615 0.00 0.00 0.00 3.82
2875 2906 7.424227 AACAAATTAGTGATGTGCCAAAATG 57.576 32.000 0.00 0.00 0.00 2.32
2965 3004 4.258702 ACTACACCTGCAGAACTACTTG 57.741 45.455 17.39 0.00 0.00 3.16
3733 3773 5.102953 TCTTGAGTATTTGGGTCCATGAG 57.897 43.478 0.00 0.00 0.00 2.90
4017 4057 8.868522 TGAAAGACATGATCAAAGAATAAGGT 57.131 30.769 0.00 0.00 0.00 3.50
4134 4175 6.266786 ACTTCATAAAAGGTAAACTGGTTGGG 59.733 38.462 0.00 0.00 0.00 4.12
4161 4202 3.629142 ACTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
4162 4203 3.328343 TCAACTAATTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 35.69 4.20
4163 4204 3.439129 GTCAACTAATTTGGAACGGAGGG 59.561 47.826 0.00 0.00 35.69 4.30
4164 4205 4.324267 AGTCAACTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 35.69 4.30
4165 4206 5.468746 TCAAGTCAACTAATTTGGAACGGAG 59.531 40.000 0.00 0.00 35.69 4.63
4166 4207 5.369833 TCAAGTCAACTAATTTGGAACGGA 58.630 37.500 0.00 0.00 35.69 4.69
4167 4208 5.682943 TCAAGTCAACTAATTTGGAACGG 57.317 39.130 0.00 0.00 35.69 4.44
4168 4209 8.479280 CAAATTCAAGTCAACTAATTTGGAACG 58.521 33.333 16.45 0.00 41.93 3.95
4169 4210 9.313118 ACAAATTCAAGTCAACTAATTTGGAAC 57.687 29.630 22.68 0.00 46.31 3.62
4170 4211 9.528018 GACAAATTCAAGTCAACTAATTTGGAA 57.472 29.630 22.68 7.42 46.31 3.53
4171 4212 8.912988 AGACAAATTCAAGTCAACTAATTTGGA 58.087 29.630 22.68 1.26 46.31 3.53
4215 4256 8.618677 CGGATGTATCTAGACACTAAACAAGTA 58.381 37.037 2.29 0.00 35.76 2.24
4216 4257 7.122353 ACGGATGTATCTAGACACTAAACAAGT 59.878 37.037 2.29 0.00 39.81 3.16
4217 4258 7.481642 ACGGATGTATCTAGACACTAAACAAG 58.518 38.462 2.29 0.00 30.52 3.16
4218 4259 7.400599 ACGGATGTATCTAGACACTAAACAA 57.599 36.000 2.29 0.00 30.52 2.83
4219 4260 8.687292 ATACGGATGTATCTAGACACTAAACA 57.313 34.615 2.29 0.00 36.56 2.83
4234 4275 9.931698 ACCCATATTTATCTAGATACGGATGTA 57.068 33.333 12.12 0.00 34.45 2.29
4235 4276 8.840200 ACCCATATTTATCTAGATACGGATGT 57.160 34.615 12.12 3.33 0.00 3.06
4236 4277 8.914011 TGACCCATATTTATCTAGATACGGATG 58.086 37.037 12.12 13.68 0.00 3.51
4237 4278 9.488762 TTGACCCATATTTATCTAGATACGGAT 57.511 33.333 12.12 9.19 0.00 4.18
4238 4279 8.888836 TTGACCCATATTTATCTAGATACGGA 57.111 34.615 12.12 2.46 0.00 4.69
4239 4280 7.707035 GCTTGACCCATATTTATCTAGATACGG 59.293 40.741 12.12 7.85 0.00 4.02
4240 4281 8.251026 TGCTTGACCCATATTTATCTAGATACG 58.749 37.037 12.12 0.00 0.00 3.06
4241 4282 9.944376 TTGCTTGACCCATATTTATCTAGATAC 57.056 33.333 12.12 0.00 0.00 2.24
4244 4285 9.866655 AAATTGCTTGACCCATATTTATCTAGA 57.133 29.630 0.00 0.00 0.00 2.43
4245 4286 9.903682 CAAATTGCTTGACCCATATTTATCTAG 57.096 33.333 0.00 0.00 37.17 2.43
4246 4287 8.859090 CCAAATTGCTTGACCCATATTTATCTA 58.141 33.333 0.00 0.00 37.17 1.98
4247 4288 7.564660 TCCAAATTGCTTGACCCATATTTATCT 59.435 33.333 0.00 0.00 37.17 1.98
4248 4289 7.725251 TCCAAATTGCTTGACCCATATTTATC 58.275 34.615 0.00 0.00 37.17 1.75
4249 4290 7.673641 TCCAAATTGCTTGACCCATATTTAT 57.326 32.000 0.00 0.00 37.17 1.40
4250 4291 7.487822 TTCCAAATTGCTTGACCCATATTTA 57.512 32.000 0.00 0.00 37.17 1.40
4251 4292 6.371595 TTCCAAATTGCTTGACCCATATTT 57.628 33.333 0.00 0.00 37.17 1.40
4252 4293 6.350906 CATTCCAAATTGCTTGACCCATATT 58.649 36.000 0.00 0.00 37.17 1.28
4253 4294 5.163280 CCATTCCAAATTGCTTGACCCATAT 60.163 40.000 0.00 0.00 37.17 1.78
4254 4295 4.161942 CCATTCCAAATTGCTTGACCCATA 59.838 41.667 0.00 0.00 37.17 2.74
4255 4296 3.054948 CCATTCCAAATTGCTTGACCCAT 60.055 43.478 0.00 0.00 37.17 4.00
4256 4297 2.302445 CCATTCCAAATTGCTTGACCCA 59.698 45.455 0.00 0.00 37.17 4.51
4257 4298 2.566724 TCCATTCCAAATTGCTTGACCC 59.433 45.455 0.00 0.00 37.17 4.46
4258 4299 3.368739 CCTCCATTCCAAATTGCTTGACC 60.369 47.826 0.00 0.00 37.17 4.02
4259 4300 3.368739 CCCTCCATTCCAAATTGCTTGAC 60.369 47.826 0.00 0.00 37.17 3.18
4260 4301 2.833338 CCCTCCATTCCAAATTGCTTGA 59.167 45.455 0.00 0.00 37.17 3.02
4261 4302 2.833338 TCCCTCCATTCCAAATTGCTTG 59.167 45.455 0.00 0.00 34.52 4.01
4262 4303 3.102204 CTCCCTCCATTCCAAATTGCTT 58.898 45.455 0.00 0.00 0.00 3.91
4263 4304 2.043526 ACTCCCTCCATTCCAAATTGCT 59.956 45.455 0.00 0.00 0.00 3.91
4264 4305 2.460669 ACTCCCTCCATTCCAAATTGC 58.539 47.619 0.00 0.00 0.00 3.56
4265 4306 3.633986 GCTACTCCCTCCATTCCAAATTG 59.366 47.826 0.00 0.00 0.00 2.32
4266 4307 3.269381 TGCTACTCCCTCCATTCCAAATT 59.731 43.478 0.00 0.00 0.00 1.82
4267 4308 2.852449 TGCTACTCCCTCCATTCCAAAT 59.148 45.455 0.00 0.00 0.00 2.32
4268 4309 2.274542 TGCTACTCCCTCCATTCCAAA 58.725 47.619 0.00 0.00 0.00 3.28
4269 4310 1.965414 TGCTACTCCCTCCATTCCAA 58.035 50.000 0.00 0.00 0.00 3.53
4270 4311 1.965414 TTGCTACTCCCTCCATTCCA 58.035 50.000 0.00 0.00 0.00 3.53
4271 4312 3.584733 AATTGCTACTCCCTCCATTCC 57.415 47.619 0.00 0.00 0.00 3.01
4272 4313 4.932200 CGATAATTGCTACTCCCTCCATTC 59.068 45.833 0.00 0.00 0.00 2.67
4273 4314 4.263068 CCGATAATTGCTACTCCCTCCATT 60.263 45.833 0.00 0.00 0.00 3.16
4274 4315 3.261897 CCGATAATTGCTACTCCCTCCAT 59.738 47.826 0.00 0.00 0.00 3.41
4275 4316 2.632996 CCGATAATTGCTACTCCCTCCA 59.367 50.000 0.00 0.00 0.00 3.86
4276 4317 2.633481 ACCGATAATTGCTACTCCCTCC 59.367 50.000 0.00 0.00 0.00 4.30
4277 4318 3.069729 ACACCGATAATTGCTACTCCCTC 59.930 47.826 0.00 0.00 0.00 4.30
4278 4319 3.039011 ACACCGATAATTGCTACTCCCT 58.961 45.455 0.00 0.00 0.00 4.20
4279 4320 3.470645 ACACCGATAATTGCTACTCCC 57.529 47.619 0.00 0.00 0.00 4.30
4280 4321 5.449107 TCTACACCGATAATTGCTACTCC 57.551 43.478 0.00 0.00 0.00 3.85
4281 4322 7.948278 AAATCTACACCGATAATTGCTACTC 57.052 36.000 0.00 0.00 0.00 2.59
4282 4323 7.769044 ACAAAATCTACACCGATAATTGCTACT 59.231 33.333 0.00 0.00 29.99 2.57
4283 4324 7.916552 ACAAAATCTACACCGATAATTGCTAC 58.083 34.615 0.00 0.00 29.99 3.58
4284 4325 9.772973 ATACAAAATCTACACCGATAATTGCTA 57.227 29.630 0.00 0.00 29.99 3.49
4285 4326 8.677148 ATACAAAATCTACACCGATAATTGCT 57.323 30.769 0.00 0.00 29.99 3.91
4479 4522 8.009622 TGCAATGAATTAGAATAGAATTGCCA 57.990 30.769 17.75 9.63 40.53 4.92
4540 4583 1.821136 CTGGGGAGCCAAGAATGAAAC 59.179 52.381 0.00 0.00 0.00 2.78
4591 4636 0.034896 AGTACCTGCAAAGTGGGACG 59.965 55.000 0.00 0.00 41.89 4.79
4777 4822 0.181350 ATTCCAGGAAGACCATCGCC 59.819 55.000 8.20 0.00 38.94 5.54
4937 4982 2.995939 CTCTTAAGCATCGCAGACACAA 59.004 45.455 0.00 0.00 42.51 3.33
4958 5003 2.778659 CAAGCGATTAACAGCAGCTTC 58.221 47.619 0.00 0.00 45.08 3.86
4988 5033 5.105392 TGCCAAGGCCATGAAAAATAACTAG 60.105 40.000 10.18 0.00 41.09 2.57
5016 5061 9.136323 TCATCGGATCAGCTATACATGTATAAT 57.864 33.333 22.67 14.83 0.00 1.28
5039 5084 4.142665 GCATGCAGATATTCAGCGATTCAT 60.143 41.667 14.21 0.00 30.93 2.57
5041 5086 3.425892 GGCATGCAGATATTCAGCGATTC 60.426 47.826 21.36 0.00 30.93 2.52
5109 5154 6.150976 CCAGTTACAGAACTTGGCATATCAAA 59.849 38.462 0.00 0.00 43.70 2.69
5149 5194 4.556501 CGCTCCAAAGTATTTTTGCAGTGA 60.557 41.667 0.00 0.00 35.03 3.41
5150 5195 3.670055 CGCTCCAAAGTATTTTTGCAGTG 59.330 43.478 0.00 0.00 35.03 3.66
5151 5196 3.568007 TCGCTCCAAAGTATTTTTGCAGT 59.432 39.130 0.00 0.00 35.03 4.40
5153 5198 3.316588 TGTCGCTCCAAAGTATTTTTGCA 59.683 39.130 0.00 0.00 35.03 4.08
5154 5199 3.896122 TGTCGCTCCAAAGTATTTTTGC 58.104 40.909 0.00 0.00 35.03 3.68
5155 5200 5.698832 TGATGTCGCTCCAAAGTATTTTTG 58.301 37.500 0.00 0.00 35.03 2.44
5156 5201 5.957842 TGATGTCGCTCCAAAGTATTTTT 57.042 34.783 0.00 0.00 35.03 1.94
5172 5233 7.176075 CGGATTGCGAATTTATCTATGATGTC 58.824 38.462 0.00 0.00 0.00 3.06
5325 5391 5.041287 TGAAGTTGCATAGTACATACTCGC 58.959 41.667 0.00 1.11 37.73 5.03
5326 5392 6.266323 AGTGAAGTTGCATAGTACATACTCG 58.734 40.000 0.00 0.00 37.73 4.18
5329 5395 9.698309 ATGATAGTGAAGTTGCATAGTACATAC 57.302 33.333 0.00 0.00 0.00 2.39
5331 5397 9.265901 GAATGATAGTGAAGTTGCATAGTACAT 57.734 33.333 0.00 0.00 0.00 2.29
5332 5398 7.710907 GGAATGATAGTGAAGTTGCATAGTACA 59.289 37.037 0.00 0.00 0.00 2.90
5357 5424 0.899720 AGCATGATGGGCAAAACAGG 59.100 50.000 0.00 0.00 0.00 4.00
5547 5614 2.484264 CCCCAAAACAATCACTCGTCTC 59.516 50.000 0.00 0.00 0.00 3.36
5557 5624 2.101640 ACTTGCTCCCCCAAAACAAT 57.898 45.000 0.00 0.00 0.00 2.71
5645 5929 1.068083 ACGCACGAGCCATATCCAG 59.932 57.895 0.00 0.00 37.52 3.86
5646 5930 1.227234 CACGCACGAGCCATATCCA 60.227 57.895 0.00 0.00 37.52 3.41
5647 5931 2.598632 GCACGCACGAGCCATATCC 61.599 63.158 0.00 0.00 37.52 2.59
5654 5938 3.564027 GGTATGGCACGCACGAGC 61.564 66.667 3.79 3.79 37.42 5.03
5655 5939 2.890474 GGGTATGGCACGCACGAG 60.890 66.667 0.00 0.00 39.81 4.18
5656 5940 3.387091 AGGGTATGGCACGCACGA 61.387 61.111 0.00 0.00 42.43 4.35
5670 5954 0.471617 GATGTGACAGGGGATCAGGG 59.528 60.000 0.00 0.00 0.00 4.45
5802 9168 9.245962 CATCCGTTAAGAGATATAAGAACGTTT 57.754 33.333 0.46 0.00 38.32 3.60
5806 9429 8.578151 ACTCCATCCGTTAAGAGATATAAGAAC 58.422 37.037 0.00 0.00 0.00 3.01
5816 9439 9.197694 CAGATAAATTACTCCATCCGTTAAGAG 57.802 37.037 0.00 0.00 0.00 2.85
5818 9441 7.095187 GGCAGATAAATTACTCCATCCGTTAAG 60.095 40.741 0.00 0.00 0.00 1.85
5821 9444 5.063880 GGCAGATAAATTACTCCATCCGTT 58.936 41.667 0.00 0.00 0.00 4.44
5827 9450 4.161565 ACACGAGGCAGATAAATTACTCCA 59.838 41.667 0.00 0.00 0.00 3.86
5840 9463 2.002586 CATCAGGTAAACACGAGGCAG 58.997 52.381 0.00 0.00 0.00 4.85
5846 9469 3.617540 TTTGTGCATCAGGTAAACACG 57.382 42.857 0.00 0.00 33.96 4.49
5876 9499 4.439016 GGAAAACTTACTTTCGTGTTGGCA 60.439 41.667 0.00 0.00 36.37 4.92
5877 9500 4.039703 GGAAAACTTACTTTCGTGTTGGC 58.960 43.478 0.00 0.00 36.37 4.52
5884 9507 3.660904 CGCACTCGGAAAACTTACTTTCG 60.661 47.826 0.00 0.00 36.37 3.46
5889 9512 0.165295 GGCGCACTCGGAAAACTTAC 59.835 55.000 10.83 0.00 35.95 2.34
5905 9528 5.065988 ACAGTTTTATAAACATGGCTAGGCG 59.934 40.000 12.19 0.39 0.00 5.52
5980 9626 5.397240 GCGGTTAAGTTTGTTTATCACACAC 59.603 40.000 0.00 0.00 36.46 3.82
5999 9645 1.671850 CCTGATACAAGTGACGCGGTT 60.672 52.381 12.47 0.00 0.00 4.44
6002 9648 1.990799 TTCCTGATACAAGTGACGCG 58.009 50.000 3.53 3.53 0.00 6.01
6017 9663 4.162131 ACTGTTTTGCCTTTGTGATTTCCT 59.838 37.500 0.00 0.00 0.00 3.36
6054 9700 7.342799 ACAACATATAAAAATCTCCATGGCACT 59.657 33.333 6.96 0.00 0.00 4.40
6083 9733 8.235226 GCCAATCTGATTCACATAATACTGATG 58.765 37.037 0.00 0.00 0.00 3.07
6097 9747 7.945033 TTTGTAAACTTTGCCAATCTGATTC 57.055 32.000 0.00 0.00 0.00 2.52
6137 9787 9.695526 TGACTTTGTCATTTTTCCAATAATCAG 57.304 29.630 0.00 0.00 37.67 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.