Multiple sequence alignment - TraesCS5D01G305800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G305800 chr5D 100.000 4345 0 0 868 5212 400910342 400914686 0.000000e+00 8024.0
1 TraesCS5D01G305800 chr5D 94.698 3489 115 21 868 4319 401326196 401329651 0.000000e+00 5354.0
2 TraesCS5D01G305800 chr5D 94.950 2515 98 13 1842 4334 401090440 401092947 0.000000e+00 3914.0
3 TraesCS5D01G305800 chr5D 98.733 868 9 2 868 1735 401033549 401034414 0.000000e+00 1541.0
4 TraesCS5D01G305800 chr5D 97.943 778 13 3 4347 5121 132864039 132864816 0.000000e+00 1345.0
5 TraesCS5D01G305800 chr5D 100.000 593 0 0 1 593 400909475 400910067 0.000000e+00 1096.0
6 TraesCS5D01G305800 chr5D 95.784 593 20 3 2 593 401032954 401033542 0.000000e+00 952.0
7 TraesCS5D01G305800 chr5D 87.557 659 76 5 3661 4319 401409918 401410570 0.000000e+00 758.0
8 TraesCS5D01G305800 chr5D 87.102 659 78 6 3661 4319 401408234 401408885 0.000000e+00 739.0
9 TraesCS5D01G305800 chr5D 86.646 659 83 4 3661 4319 402016383 402017036 0.000000e+00 725.0
10 TraesCS5D01G305800 chr5D 86.626 658 78 6 3661 4318 401903805 401904452 0.000000e+00 719.0
11 TraesCS5D01G305800 chr5D 93.365 211 13 1 1 210 401324157 401324367 1.410000e-80 311.0
12 TraesCS5D01G305800 chr5D 95.425 153 7 0 333 485 401324376 401324528 1.450000e-60 244.0
13 TraesCS5D01G305800 chr5D 94.643 112 5 1 482 593 401326079 401326189 6.940000e-39 172.0
14 TraesCS5D01G305800 chr5D 92.308 117 5 1 1728 1840 401034911 401035027 4.180000e-36 163.0
15 TraesCS5D01G305800 chr5A 94.171 3500 127 18 868 4319 506148922 506152392 0.000000e+00 5262.0
16 TraesCS5D01G305800 chr5A 89.488 723 61 8 2218 2932 508336356 508335641 0.000000e+00 900.0
17 TraesCS5D01G305800 chr5A 88.920 722 66 7 2218 2932 508530245 508530959 0.000000e+00 878.0
18 TraesCS5D01G305800 chr5A 87.578 644 71 7 3665 4307 507951989 507952624 0.000000e+00 737.0
19 TraesCS5D01G305800 chr5A 86.646 659 83 5 3661 4319 507092591 507093244 0.000000e+00 725.0
20 TraesCS5D01G305800 chr5A 95.539 269 4 3 333 593 506148643 506148911 1.740000e-114 424.0
21 TraesCS5D01G305800 chr5A 93.401 197 9 1 1 193 506148436 506148632 6.600000e-74 289.0
22 TraesCS5D01G305800 chr5B 88.072 1727 135 21 2201 3897 480801606 480803291 0.000000e+00 1982.0
23 TraesCS5D01G305800 chr5B 87.977 1730 139 22 2199 3897 480767194 480768885 0.000000e+00 1978.0
24 TraesCS5D01G305800 chr5B 88.047 1029 46 24 868 1844 480799746 480800749 0.000000e+00 1147.0
25 TraesCS5D01G305800 chr5B 87.451 1028 53 24 868 1844 480765338 480766340 0.000000e+00 1114.0
26 TraesCS5D01G305800 chr5B 89.532 726 61 8 2220 2932 481132963 481133686 0.000000e+00 905.0
27 TraesCS5D01G305800 chr5B 89.103 725 65 7 2220 2932 481065189 481065911 0.000000e+00 889.0
28 TraesCS5D01G305800 chr5B 88.858 709 68 7 2233 2932 481071161 481071867 0.000000e+00 861.0
29 TraesCS5D01G305800 chr5B 87.622 719 69 13 2220 2932 481119810 481120514 0.000000e+00 817.0
30 TraesCS5D01G305800 chr5B 91.257 549 43 3 3124 3671 481065903 481066447 0.000000e+00 743.0
31 TraesCS5D01G305800 chr5B 91.075 549 44 3 3124 3671 481071859 481072403 0.000000e+00 737.0
32 TraesCS5D01G305800 chr5B 90.893 549 46 2 3124 3671 481083275 481083820 0.000000e+00 734.0
33 TraesCS5D01G305800 chr5B 94.819 193 10 0 1 193 480799197 480799389 8.480000e-78 302.0
34 TraesCS5D01G305800 chr5B 93.782 193 12 0 1 193 480780396 480780588 1.840000e-74 291.0
35 TraesCS5D01G305800 chr5B 93.782 193 12 0 1 193 480811305 480811497 1.840000e-74 291.0
36 TraesCS5D01G305800 chr5B 93.333 180 5 4 399 572 480799571 480799749 5.180000e-65 259.0
37 TraesCS5D01G305800 chr5B 90.155 193 19 0 1 193 480764653 480764845 8.660000e-63 252.0
38 TraesCS5D01G305800 chr5B 97.656 128 2 1 211 337 583834991 583834864 8.790000e-53 219.0
39 TraesCS5D01G305800 chr5B 94.309 123 7 0 450 572 480765219 480765341 6.890000e-44 189.0
40 TraesCS5D01G305800 chr5B 97.101 69 2 0 333 401 480799400 480799468 3.300000e-22 117.0
41 TraesCS5D01G305800 chr5B 95.652 69 3 0 333 401 480780599 480780667 1.530000e-20 111.0
42 TraesCS5D01G305800 chr5B 95.652 69 3 0 333 401 480811508 480811576 1.530000e-20 111.0
43 TraesCS5D01G305800 chr5B 96.667 60 2 0 399 458 480765146 480765205 3.320000e-17 100.0
44 TraesCS5D01G305800 chr4D 94.822 869 23 4 4347 5212 477580336 477579487 0.000000e+00 1336.0
45 TraesCS5D01G305800 chr4D 94.670 713 20 3 4502 5212 25182711 25183407 0.000000e+00 1090.0
46 TraesCS5D01G305800 chr7D 94.218 882 23 9 4335 5212 549257342 549258199 0.000000e+00 1321.0
47 TraesCS5D01G305800 chr7D 96.895 773 13 4 4440 5212 625036752 625037513 0.000000e+00 1284.0
48 TraesCS5D01G305800 chr7D 96.178 785 16 4 4440 5212 120859849 120860631 0.000000e+00 1271.0
49 TraesCS5D01G305800 chr7D 95.918 784 21 1 4440 5212 116343437 116344220 0.000000e+00 1260.0
50 TraesCS5D01G305800 chr7D 92.188 896 22 17 4347 5212 60455400 60456277 0.000000e+00 1223.0
51 TraesCS5D01G305800 chr7D 90.859 908 23 11 4347 5212 151774512 151775401 0.000000e+00 1162.0
52 TraesCS5D01G305800 chr7D 94.072 776 27 3 4440 5212 638660881 638661640 0.000000e+00 1160.0
53 TraesCS5D01G305800 chr7D 90.408 907 28 11 4347 5212 559782020 559782908 0.000000e+00 1138.0
54 TraesCS5D01G305800 chr7D 94.517 693 20 3 4522 5212 605705325 605706001 0.000000e+00 1053.0
55 TraesCS5D01G305800 chr7D 89.729 701 27 17 4347 5022 566228778 566229458 0.000000e+00 854.0
56 TraesCS5D01G305800 chr7D 96.273 161 5 1 4335 4494 25521689 25521529 4.000000e-66 263.0
57 TraesCS5D01G305800 chr7D 97.315 149 3 1 4347 4494 617333491 617333639 8.660000e-63 252.0
58 TraesCS5D01G305800 chr7D 97.260 146 3 1 4335 4479 596597202 596597057 4.030000e-61 246.0
59 TraesCS5D01G305800 chrUn 94.170 892 9 4 4347 5212 108937933 108937059 0.000000e+00 1319.0
60 TraesCS5D01G305800 chrUn 88.047 1029 46 24 868 1844 298717704 298716701 0.000000e+00 1147.0
61 TraesCS5D01G305800 chrUn 89.068 869 77 6 3029 3897 349852538 349853388 0.000000e+00 1062.0
62 TraesCS5D01G305800 chrUn 94.819 193 10 0 1 193 298718252 298718060 8.480000e-78 302.0
63 TraesCS5D01G305800 chrUn 94.819 193 10 0 1 193 476557142 476556950 8.480000e-78 302.0
64 TraesCS5D01G305800 chrUn 92.778 180 5 5 399 572 298717878 298717701 2.410000e-63 254.0
65 TraesCS5D01G305800 chrUn 97.101 69 2 0 333 401 298718049 298717981 3.300000e-22 117.0
66 TraesCS5D01G305800 chrUn 97.101 69 2 0 333 401 476556939 476556871 3.300000e-22 117.0
67 TraesCS5D01G305800 chr6D 96.684 784 13 3 4440 5212 79358487 79357706 0.000000e+00 1291.0
68 TraesCS5D01G305800 chr6D 92.489 892 23 11 4347 5212 27992025 27991152 0.000000e+00 1236.0
69 TraesCS5D01G305800 chr6D 80.066 301 55 4 1873 2170 27102975 27102677 8.790000e-53 219.0
70 TraesCS5D01G305800 chr2D 96.429 784 16 2 4440 5212 13986689 13985907 0.000000e+00 1282.0
71 TraesCS5D01G305800 chr2D 97.068 648 16 3 4440 5086 31978927 31979572 0.000000e+00 1088.0
72 TraesCS5D01G305800 chr2D 97.665 257 5 1 4347 4602 464398333 464398077 1.720000e-119 440.0
73 TraesCS5D01G305800 chr2D 97.656 128 2 1 211 337 520177812 520177939 8.790000e-53 219.0
74 TraesCS5D01G305800 chr3D 94.716 776 22 3 4440 5212 30683990 30683231 0.000000e+00 1188.0
75 TraesCS5D01G305800 chr1D 95.584 702 8 2 4440 5119 5394129 5393429 0.000000e+00 1103.0
76 TraesCS5D01G305800 chr1D 93.961 712 22 5 4506 5212 412775801 412775106 0.000000e+00 1057.0
77 TraesCS5D01G305800 chr1D 94.000 50 3 0 1752 1801 492613119 492613168 5.600000e-10 76.8
78 TraesCS5D01G305800 chr4B 88.723 736 40 15 4502 5212 561894202 561893485 0.000000e+00 859.0
79 TraesCS5D01G305800 chr6B 81.928 332 54 6 1842 2169 673381231 673380902 5.140000e-70 276.0
80 TraesCS5D01G305800 chr6B 97.656 128 2 1 211 337 198803510 198803637 8.790000e-53 219.0
81 TraesCS5D01G305800 chr6B 97.656 128 2 1 211 337 471851316 471851443 8.790000e-53 219.0
82 TraesCS5D01G305800 chr6B 97.656 128 2 1 211 337 561883227 561883354 8.790000e-53 219.0
83 TraesCS5D01G305800 chr6B 97.656 128 2 1 211 337 583869882 583870009 8.790000e-53 219.0
84 TraesCS5D01G305800 chr6B 97.656 128 2 1 211 337 678480845 678480972 8.790000e-53 219.0
85 TraesCS5D01G305800 chr1B 79.217 332 58 8 1843 2170 66141394 66141070 2.440000e-53 220.0
86 TraesCS5D01G305800 chr1B 97.656 128 2 1 211 337 360672636 360672763 8.790000e-53 219.0
87 TraesCS5D01G305800 chr1A 94.000 50 3 0 1752 1801 591095977 591096026 5.600000e-10 76.8
88 TraesCS5D01G305800 chr7B 88.679 53 6 0 1755 1807 531604918 531604866 1.210000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G305800 chr5D 400909475 400914686 5211 False 4560.000000 8024 100.000000 1 5212 2 chr5D.!!$F5 5211
1 TraesCS5D01G305800 chr5D 401090440 401092947 2507 False 3914.000000 3914 94.950000 1842 4334 1 chr5D.!!$F2 2492
2 TraesCS5D01G305800 chr5D 401324157 401329651 5494 False 1520.250000 5354 94.532750 1 4319 4 chr5D.!!$F7 4318
3 TraesCS5D01G305800 chr5D 132864039 132864816 777 False 1345.000000 1345 97.943000 4347 5121 1 chr5D.!!$F1 774
4 TraesCS5D01G305800 chr5D 401032954 401035027 2073 False 885.333333 1541 95.608333 2 1840 3 chr5D.!!$F6 1838
5 TraesCS5D01G305800 chr5D 401408234 401410570 2336 False 748.500000 758 87.329500 3661 4319 2 chr5D.!!$F8 658
6 TraesCS5D01G305800 chr5D 402016383 402017036 653 False 725.000000 725 86.646000 3661 4319 1 chr5D.!!$F4 658
7 TraesCS5D01G305800 chr5D 401903805 401904452 647 False 719.000000 719 86.626000 3661 4318 1 chr5D.!!$F3 657
8 TraesCS5D01G305800 chr5A 506148436 506152392 3956 False 1991.666667 5262 94.370333 1 4319 3 chr5A.!!$F4 4318
9 TraesCS5D01G305800 chr5A 508335641 508336356 715 True 900.000000 900 89.488000 2218 2932 1 chr5A.!!$R1 714
10 TraesCS5D01G305800 chr5A 508530245 508530959 714 False 878.000000 878 88.920000 2218 2932 1 chr5A.!!$F3 714
11 TraesCS5D01G305800 chr5A 507951989 507952624 635 False 737.000000 737 87.578000 3665 4307 1 chr5A.!!$F2 642
12 TraesCS5D01G305800 chr5A 507092591 507093244 653 False 725.000000 725 86.646000 3661 4319 1 chr5A.!!$F1 658
13 TraesCS5D01G305800 chr5B 481132963 481133686 723 False 905.000000 905 89.532000 2220 2932 1 chr5B.!!$F3 712
14 TraesCS5D01G305800 chr5B 481119810 481120514 704 False 817.000000 817 87.622000 2220 2932 1 chr5B.!!$F2 712
15 TraesCS5D01G305800 chr5B 481065189 481066447 1258 False 816.000000 889 90.180000 2220 3671 2 chr5B.!!$F8 1451
16 TraesCS5D01G305800 chr5B 481071161 481072403 1242 False 799.000000 861 89.966500 2233 3671 2 chr5B.!!$F9 1438
17 TraesCS5D01G305800 chr5B 480799197 480803291 4094 False 761.400000 1982 92.274400 1 3897 5 chr5B.!!$F6 3896
18 TraesCS5D01G305800 chr5B 481083275 481083820 545 False 734.000000 734 90.893000 3124 3671 1 chr5B.!!$F1 547
19 TraesCS5D01G305800 chr5B 480764653 480768885 4232 False 726.600000 1978 91.311800 1 3897 5 chr5B.!!$F4 3896
20 TraesCS5D01G305800 chr4D 477579487 477580336 849 True 1336.000000 1336 94.822000 4347 5212 1 chr4D.!!$R1 865
21 TraesCS5D01G305800 chr4D 25182711 25183407 696 False 1090.000000 1090 94.670000 4502 5212 1 chr4D.!!$F1 710
22 TraesCS5D01G305800 chr7D 549257342 549258199 857 False 1321.000000 1321 94.218000 4335 5212 1 chr7D.!!$F5 877
23 TraesCS5D01G305800 chr7D 625036752 625037513 761 False 1284.000000 1284 96.895000 4440 5212 1 chr7D.!!$F10 772
24 TraesCS5D01G305800 chr7D 120859849 120860631 782 False 1271.000000 1271 96.178000 4440 5212 1 chr7D.!!$F3 772
25 TraesCS5D01G305800 chr7D 116343437 116344220 783 False 1260.000000 1260 95.918000 4440 5212 1 chr7D.!!$F2 772
26 TraesCS5D01G305800 chr7D 60455400 60456277 877 False 1223.000000 1223 92.188000 4347 5212 1 chr7D.!!$F1 865
27 TraesCS5D01G305800 chr7D 151774512 151775401 889 False 1162.000000 1162 90.859000 4347 5212 1 chr7D.!!$F4 865
28 TraesCS5D01G305800 chr7D 638660881 638661640 759 False 1160.000000 1160 94.072000 4440 5212 1 chr7D.!!$F11 772
29 TraesCS5D01G305800 chr7D 559782020 559782908 888 False 1138.000000 1138 90.408000 4347 5212 1 chr7D.!!$F6 865
30 TraesCS5D01G305800 chr7D 605705325 605706001 676 False 1053.000000 1053 94.517000 4522 5212 1 chr7D.!!$F8 690
31 TraesCS5D01G305800 chr7D 566228778 566229458 680 False 854.000000 854 89.729000 4347 5022 1 chr7D.!!$F7 675
32 TraesCS5D01G305800 chrUn 108937059 108937933 874 True 1319.000000 1319 94.170000 4347 5212 1 chrUn.!!$R1 865
33 TraesCS5D01G305800 chrUn 349852538 349853388 850 False 1062.000000 1062 89.068000 3029 3897 1 chrUn.!!$F1 868
34 TraesCS5D01G305800 chrUn 298716701 298718252 1551 True 455.000000 1147 93.186250 1 1844 4 chrUn.!!$R2 1843
35 TraesCS5D01G305800 chr6D 79357706 79358487 781 True 1291.000000 1291 96.684000 4440 5212 1 chr6D.!!$R3 772
36 TraesCS5D01G305800 chr6D 27991152 27992025 873 True 1236.000000 1236 92.489000 4347 5212 1 chr6D.!!$R2 865
37 TraesCS5D01G305800 chr2D 13985907 13986689 782 True 1282.000000 1282 96.429000 4440 5212 1 chr2D.!!$R1 772
38 TraesCS5D01G305800 chr2D 31978927 31979572 645 False 1088.000000 1088 97.068000 4440 5086 1 chr2D.!!$F1 646
39 TraesCS5D01G305800 chr3D 30683231 30683990 759 True 1188.000000 1188 94.716000 4440 5212 1 chr3D.!!$R1 772
40 TraesCS5D01G305800 chr1D 5393429 5394129 700 True 1103.000000 1103 95.584000 4440 5119 1 chr1D.!!$R1 679
41 TraesCS5D01G305800 chr1D 412775106 412775801 695 True 1057.000000 1057 93.961000 4506 5212 1 chr1D.!!$R2 706
42 TraesCS5D01G305800 chr4B 561893485 561894202 717 True 859.000000 859 88.723000 4502 5212 1 chr4B.!!$R1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 231 0.679002 CGAGTACTCCCTCCGTTCCA 60.679 60.000 17.23 0.00 0.00 3.53 F
375 382 0.957888 GTGCAGGAGGAAGAAGGTGC 60.958 60.000 0.00 0.00 0.00 5.01 F
1987 5029 3.119101 ACTCGGCGAACTTGATATTCTGT 60.119 43.478 12.13 0.00 0.00 3.41 F
2111 5155 2.103263 AGACAGAAGTTTGCCGAGTTCT 59.897 45.455 1.74 1.74 39.33 3.01 F
3423 6599 0.670162 ACACTTGTCAATGCAGGTGC 59.330 50.000 15.50 0.00 46.24 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 3413 0.038166 GCCACCCACCATCTTCTTCA 59.962 55.000 0.00 0.0 0.00 3.02 R
2075 5119 1.466167 CTGTCTGCCAAGTTTGATCGG 59.534 52.381 0.00 0.0 0.00 4.18 R
3404 6580 0.670162 GCACCTGCATTGACAAGTGT 59.330 50.000 6.43 0.0 41.59 3.55 R
3636 6812 0.690762 CGGGGTGGTATAGGGATTGG 59.309 60.000 0.00 0.0 0.00 3.16 R
4319 9190 0.309922 CAGTGGCTTTGTGCAGTCTG 59.690 55.000 0.00 0.0 45.15 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 169 4.497984 TGTTGGTGGCGGCTGTGT 62.498 61.111 11.43 0.00 0.00 3.72
166 172 3.705934 TTGGTGGCGGCTGTGTGAA 62.706 57.895 11.43 0.00 0.00 3.18
225 231 0.679002 CGAGTACTCCCTCCGTTCCA 60.679 60.000 17.23 0.00 0.00 3.53
326 333 8.650490 ACAAATGGAAGTCAAGTATTTTGGAAT 58.350 29.630 0.00 0.00 29.41 3.01
375 382 0.957888 GTGCAGGAGGAAGAAGGTGC 60.958 60.000 0.00 0.00 0.00 5.01
572 2488 5.608449 GGGTTGACAACTAGTGTAGTCTTT 58.392 41.667 17.52 0.00 41.96 2.52
573 2489 6.053650 GGGTTGACAACTAGTGTAGTCTTTT 58.946 40.000 17.52 0.00 41.96 2.27
574 2490 6.541278 GGGTTGACAACTAGTGTAGTCTTTTT 59.459 38.462 17.52 0.00 41.96 1.94
1737 4252 7.733773 TTTTAGGAATGAGAGGTGTGATAGA 57.266 36.000 0.00 0.00 0.00 1.98
1840 4361 5.640147 TGAGGGGTCAAATGTGATAGTTTT 58.360 37.500 0.00 0.00 35.80 2.43
1849 4891 8.925700 GTCAAATGTGATAGTTTTGGGAAAATC 58.074 33.333 0.00 0.00 35.80 2.17
1987 5029 3.119101 ACTCGGCGAACTTGATATTCTGT 60.119 43.478 12.13 0.00 0.00 3.41
2075 5119 5.499139 TTATCATTGCCGAGTCCAATTTC 57.501 39.130 0.00 0.00 30.90 2.17
2111 5155 2.103263 AGACAGAAGTTTGCCGAGTTCT 59.897 45.455 1.74 1.74 39.33 3.01
2419 5559 9.150348 ACAACTTGTTTTCTCTTTTATTGGTTG 57.850 29.630 0.00 0.00 35.46 3.77
2472 5613 2.368655 AATTTCATTGAAGGTGGCGC 57.631 45.000 0.00 0.00 0.00 6.53
2880 6050 6.072452 CCTCACTTTAAACTCTGGACAAATCC 60.072 42.308 0.00 0.00 46.48 3.01
3133 6305 6.986817 CGATTCCAAACTATGTATGAGTTCCT 59.013 38.462 0.00 0.00 36.10 3.36
3386 6562 8.977505 GCTGAACTGATGCATTAAAGTTTTAAA 58.022 29.630 18.67 9.00 36.35 1.52
3391 6567 9.979578 ACTGATGCATTAAAGTTTTAAATGACA 57.020 25.926 13.09 10.79 36.35 3.58
3407 6583 9.522804 TTTAAATGACATTTGTACCTTTGACAC 57.477 29.630 21.21 0.00 33.82 3.67
3408 6584 6.959639 AATGACATTTGTACCTTTGACACT 57.040 33.333 0.00 0.00 0.00 3.55
3409 6585 6.959639 ATGACATTTGTACCTTTGACACTT 57.040 33.333 0.00 0.00 0.00 3.16
3410 6586 6.130298 TGACATTTGTACCTTTGACACTTG 57.870 37.500 0.00 0.00 0.00 3.16
3411 6587 5.650266 TGACATTTGTACCTTTGACACTTGT 59.350 36.000 0.00 0.00 0.00 3.16
3412 6588 6.131544 ACATTTGTACCTTTGACACTTGTC 57.868 37.500 2.19 2.19 44.97 3.18
3423 6599 0.670162 ACACTTGTCAATGCAGGTGC 59.330 50.000 15.50 0.00 46.24 5.01
3424 6600 0.956633 CACTTGTCAATGCAGGTGCT 59.043 50.000 3.18 0.00 39.08 4.40
3425 6601 1.338973 CACTTGTCAATGCAGGTGCTT 59.661 47.619 3.18 0.00 39.08 3.91
3426 6602 1.338973 ACTTGTCAATGCAGGTGCTTG 59.661 47.619 3.18 5.80 42.66 4.01
3427 6603 1.610038 CTTGTCAATGCAGGTGCTTGA 59.390 47.619 3.18 7.89 42.66 3.02
3428 6604 1.913778 TGTCAATGCAGGTGCTTGAT 58.086 45.000 15.29 0.00 42.66 2.57
3429 6605 1.542472 TGTCAATGCAGGTGCTTGATG 59.458 47.619 15.29 5.71 42.66 3.07
3430 6606 1.814394 GTCAATGCAGGTGCTTGATGA 59.186 47.619 15.29 7.42 42.66 2.92
3431 6607 2.089201 TCAATGCAGGTGCTTGATGAG 58.911 47.619 3.18 0.00 42.66 2.90
3432 6608 2.089201 CAATGCAGGTGCTTGATGAGA 58.911 47.619 3.18 0.00 42.66 3.27
3433 6609 2.688446 CAATGCAGGTGCTTGATGAGAT 59.312 45.455 3.18 0.00 42.66 2.75
3434 6610 2.034104 TGCAGGTGCTTGATGAGATC 57.966 50.000 3.18 0.00 42.66 2.75
3435 6611 1.558294 TGCAGGTGCTTGATGAGATCT 59.442 47.619 0.00 0.00 42.66 2.75
3436 6612 1.941294 GCAGGTGCTTGATGAGATCTG 59.059 52.381 0.00 0.00 38.21 2.90
3437 6613 2.680221 GCAGGTGCTTGATGAGATCTGT 60.680 50.000 0.00 0.00 38.21 3.41
3438 6614 3.607741 CAGGTGCTTGATGAGATCTGTT 58.392 45.455 0.00 0.00 0.00 3.16
3439 6615 4.763073 CAGGTGCTTGATGAGATCTGTTA 58.237 43.478 0.00 0.00 0.00 2.41
3440 6616 5.366460 CAGGTGCTTGATGAGATCTGTTAT 58.634 41.667 0.00 0.00 0.00 1.89
3441 6617 5.236695 CAGGTGCTTGATGAGATCTGTTATG 59.763 44.000 0.00 0.00 0.00 1.90
3442 6618 5.129980 AGGTGCTTGATGAGATCTGTTATGA 59.870 40.000 0.00 0.00 0.00 2.15
3443 6619 5.996513 GGTGCTTGATGAGATCTGTTATGAT 59.003 40.000 0.00 0.00 0.00 2.45
3444 6620 6.485984 GGTGCTTGATGAGATCTGTTATGATT 59.514 38.462 0.00 0.00 0.00 2.57
3445 6621 7.353497 GTGCTTGATGAGATCTGTTATGATTG 58.647 38.462 0.00 0.00 0.00 2.67
3446 6622 6.017357 TGCTTGATGAGATCTGTTATGATTGC 60.017 38.462 0.00 0.00 0.00 3.56
3447 6623 6.535274 TTGATGAGATCTGTTATGATTGCG 57.465 37.500 0.00 0.00 0.00 4.85
3448 6624 5.846203 TGATGAGATCTGTTATGATTGCGA 58.154 37.500 0.00 0.00 0.00 5.10
3449 6625 6.461640 TGATGAGATCTGTTATGATTGCGAT 58.538 36.000 0.00 0.00 0.00 4.58
3450 6626 6.932960 TGATGAGATCTGTTATGATTGCGATT 59.067 34.615 0.00 0.00 0.00 3.34
3451 6627 6.535274 TGAGATCTGTTATGATTGCGATTG 57.465 37.500 0.00 0.00 0.00 2.67
3452 6628 5.467735 TGAGATCTGTTATGATTGCGATTGG 59.532 40.000 0.00 0.00 0.00 3.16
3453 6629 5.614308 AGATCTGTTATGATTGCGATTGGA 58.386 37.500 0.00 0.00 0.00 3.53
3454 6630 6.236409 AGATCTGTTATGATTGCGATTGGAT 58.764 36.000 0.00 0.00 0.00 3.41
3455 6631 5.678132 TCTGTTATGATTGCGATTGGATG 57.322 39.130 0.00 0.00 0.00 3.51
3456 6632 4.516321 TCTGTTATGATTGCGATTGGATGG 59.484 41.667 0.00 0.00 0.00 3.51
3457 6633 3.004629 TGTTATGATTGCGATTGGATGGC 59.995 43.478 0.00 0.00 34.31 4.40
3458 6634 0.963962 ATGATTGCGATTGGATGGCC 59.036 50.000 0.00 0.00 32.57 5.36
3459 6635 1.108727 TGATTGCGATTGGATGGCCC 61.109 55.000 0.00 0.00 32.57 5.80
3460 6636 1.809567 GATTGCGATTGGATGGCCCC 61.810 60.000 0.00 0.00 32.57 5.80
3461 6637 2.302517 ATTGCGATTGGATGGCCCCT 62.303 55.000 0.00 0.00 32.57 4.79
3462 6638 1.640593 TTGCGATTGGATGGCCCCTA 61.641 55.000 0.00 0.00 32.57 3.53
3463 6639 1.302832 GCGATTGGATGGCCCCTAG 60.303 63.158 0.00 0.00 0.00 3.02
3464 6640 1.768684 GCGATTGGATGGCCCCTAGA 61.769 60.000 0.00 0.00 0.00 2.43
3465 6641 0.987294 CGATTGGATGGCCCCTAGAT 59.013 55.000 0.00 0.00 0.00 1.98
3466 6642 2.187958 CGATTGGATGGCCCCTAGATA 58.812 52.381 0.00 0.00 0.00 1.98
3467 6643 2.093447 CGATTGGATGGCCCCTAGATAC 60.093 54.545 0.00 0.00 0.00 2.24
3468 6644 2.505672 TTGGATGGCCCCTAGATACA 57.494 50.000 0.00 0.00 0.00 2.29
3469 6645 1.729586 TGGATGGCCCCTAGATACAC 58.270 55.000 0.00 0.00 0.00 2.90
3470 6646 1.061735 TGGATGGCCCCTAGATACACA 60.062 52.381 0.00 0.00 0.00 3.72
3471 6647 1.625818 GGATGGCCCCTAGATACACAG 59.374 57.143 0.00 0.00 0.00 3.66
3472 6648 2.330216 GATGGCCCCTAGATACACAGT 58.670 52.381 0.00 0.00 0.00 3.55
3473 6649 3.507411 GATGGCCCCTAGATACACAGTA 58.493 50.000 0.00 0.00 0.00 2.74
3474 6650 2.958818 TGGCCCCTAGATACACAGTAG 58.041 52.381 0.00 0.00 0.00 2.57
3475 6651 2.246588 TGGCCCCTAGATACACAGTAGT 59.753 50.000 0.00 0.00 0.00 2.73
3476 6652 3.464456 TGGCCCCTAGATACACAGTAGTA 59.536 47.826 0.00 0.00 0.00 1.82
3477 6653 3.825585 GGCCCCTAGATACACAGTAGTAC 59.174 52.174 0.00 0.00 0.00 2.73
3478 6654 3.825585 GCCCCTAGATACACAGTAGTACC 59.174 52.174 0.00 0.00 0.00 3.34
3479 6655 4.447470 GCCCCTAGATACACAGTAGTACCT 60.447 50.000 0.00 0.00 0.00 3.08
3480 6656 5.703310 CCCCTAGATACACAGTAGTACCTT 58.297 45.833 0.00 0.00 0.00 3.50
3481 6657 5.769162 CCCCTAGATACACAGTAGTACCTTC 59.231 48.000 0.00 0.00 0.00 3.46
3482 6658 6.363065 CCCTAGATACACAGTAGTACCTTCA 58.637 44.000 0.00 0.00 0.00 3.02
3483 6659 6.262720 CCCTAGATACACAGTAGTACCTTCAC 59.737 46.154 0.00 0.00 0.00 3.18
3484 6660 7.055378 CCTAGATACACAGTAGTACCTTCACT 58.945 42.308 0.00 0.00 0.00 3.41
3485 6661 8.209584 CCTAGATACACAGTAGTACCTTCACTA 58.790 40.741 0.00 0.00 0.00 2.74
3486 6662 9.263538 CTAGATACACAGTAGTACCTTCACTAG 57.736 40.741 0.00 0.00 31.73 2.57
3487 6663 6.543100 AGATACACAGTAGTACCTTCACTAGC 59.457 42.308 0.00 0.00 31.73 3.42
3488 6664 4.404640 ACACAGTAGTACCTTCACTAGCA 58.595 43.478 0.00 0.00 31.73 3.49
3489 6665 4.459685 ACACAGTAGTACCTTCACTAGCAG 59.540 45.833 0.00 0.00 31.73 4.24
3490 6666 4.700692 CACAGTAGTACCTTCACTAGCAGA 59.299 45.833 0.00 0.00 31.73 4.26
3491 6667 5.358442 CACAGTAGTACCTTCACTAGCAGAT 59.642 44.000 0.00 0.00 31.73 2.90
3492 6668 5.358442 ACAGTAGTACCTTCACTAGCAGATG 59.642 44.000 0.00 0.00 31.73 2.90
3493 6669 4.890581 AGTAGTACCTTCACTAGCAGATGG 59.109 45.833 13.20 13.20 36.62 3.51
3494 6670 3.714144 AGTACCTTCACTAGCAGATGGT 58.286 45.455 20.25 20.25 43.48 3.55
3495 6671 4.868268 AGTACCTTCACTAGCAGATGGTA 58.132 43.478 18.81 18.81 41.87 3.25
3496 6672 5.459505 AGTACCTTCACTAGCAGATGGTAT 58.540 41.667 22.56 14.23 43.41 2.73
3497 6673 4.679373 ACCTTCACTAGCAGATGGTATG 57.321 45.455 16.93 0.00 40.52 2.39
3498 6674 4.033709 ACCTTCACTAGCAGATGGTATGT 58.966 43.478 16.93 0.00 40.52 2.29
3499 6675 4.141846 ACCTTCACTAGCAGATGGTATGTG 60.142 45.833 16.93 11.84 40.52 3.21
3500 6676 4.141846 CCTTCACTAGCAGATGGTATGTGT 60.142 45.833 15.03 1.27 33.33 3.72
3501 6677 5.069119 CCTTCACTAGCAGATGGTATGTGTA 59.931 44.000 15.03 9.22 33.33 2.90
3502 6678 6.406961 CCTTCACTAGCAGATGGTATGTGTAA 60.407 42.308 15.03 10.38 33.33 2.41
3503 6679 6.538945 TCACTAGCAGATGGTATGTGTAAA 57.461 37.500 15.03 2.31 33.33 2.01
3504 6680 7.124573 TCACTAGCAGATGGTATGTGTAAAT 57.875 36.000 15.03 0.00 33.33 1.40
3505 6681 8.245195 TCACTAGCAGATGGTATGTGTAAATA 57.755 34.615 15.03 1.85 33.33 1.40
3506 6682 8.141909 TCACTAGCAGATGGTATGTGTAAATAC 58.858 37.037 15.03 0.00 33.33 1.89
3545 6721 9.859427 CTCTATAATTTTCCAAATGAACAAGCA 57.141 29.630 0.00 0.00 31.05 3.91
3561 6737 2.957402 AGCATTGAGTTCTTGGACCA 57.043 45.000 0.00 0.00 0.00 4.02
3562 6738 3.446442 AGCATTGAGTTCTTGGACCAT 57.554 42.857 0.00 0.00 0.00 3.55
3563 6739 4.574674 AGCATTGAGTTCTTGGACCATA 57.425 40.909 0.00 0.00 0.00 2.74
3564 6740 5.121380 AGCATTGAGTTCTTGGACCATAT 57.879 39.130 0.00 0.00 0.00 1.78
3565 6741 6.252599 AGCATTGAGTTCTTGGACCATATA 57.747 37.500 0.00 0.00 0.00 0.86
3566 6742 6.294473 AGCATTGAGTTCTTGGACCATATAG 58.706 40.000 0.00 0.00 0.00 1.31
3567 6743 5.471456 GCATTGAGTTCTTGGACCATATAGG 59.529 44.000 0.00 0.00 45.67 2.57
3568 6744 4.689612 TGAGTTCTTGGACCATATAGGC 57.310 45.455 0.00 0.00 43.14 3.93
3569 6745 4.037222 TGAGTTCTTGGACCATATAGGCA 58.963 43.478 0.00 0.00 43.14 4.75
3570 6746 4.141711 TGAGTTCTTGGACCATATAGGCAC 60.142 45.833 0.00 0.00 43.14 5.01
3571 6747 3.780294 AGTTCTTGGACCATATAGGCACA 59.220 43.478 0.00 0.00 43.14 4.57
3572 6748 4.227300 AGTTCTTGGACCATATAGGCACAA 59.773 41.667 0.00 0.00 43.14 3.33
3573 6749 5.103940 AGTTCTTGGACCATATAGGCACAAT 60.104 40.000 0.00 0.00 43.14 2.71
3574 6750 6.101150 AGTTCTTGGACCATATAGGCACAATA 59.899 38.462 0.00 0.00 43.14 1.90
3575 6751 6.508030 TCTTGGACCATATAGGCACAATAA 57.492 37.500 0.00 0.00 43.14 1.40
3576 6752 7.090319 TCTTGGACCATATAGGCACAATAAT 57.910 36.000 0.00 0.00 43.14 1.28
3577 6753 8.213489 TCTTGGACCATATAGGCACAATAATA 57.787 34.615 0.00 0.00 43.14 0.98
3578 6754 8.664992 TCTTGGACCATATAGGCACAATAATAA 58.335 33.333 0.00 0.00 43.14 1.40
3579 6755 9.295825 CTTGGACCATATAGGCACAATAATAAA 57.704 33.333 0.00 0.00 43.14 1.40
3580 6756 8.862325 TGGACCATATAGGCACAATAATAAAG 57.138 34.615 0.00 0.00 43.14 1.85
3581 6757 8.664992 TGGACCATATAGGCACAATAATAAAGA 58.335 33.333 0.00 0.00 43.14 2.52
3582 6758 9.515226 GGACCATATAGGCACAATAATAAAGAA 57.485 33.333 0.00 0.00 43.14 2.52
3603 6779 8.655935 AAGAATTTCATAGAAATGGGTCTTGT 57.344 30.769 13.14 0.00 33.61 3.16
3604 6780 8.059798 AGAATTTCATAGAAATGGGTCTTGTG 57.940 34.615 5.81 0.00 33.61 3.33
3605 6781 5.643379 TTTCATAGAAATGGGTCTTGTGC 57.357 39.130 0.00 0.00 33.61 4.57
3606 6782 3.620488 TCATAGAAATGGGTCTTGTGCC 58.380 45.455 0.00 0.00 33.61 5.01
3607 6783 3.010027 TCATAGAAATGGGTCTTGTGCCA 59.990 43.478 0.00 0.00 33.61 4.92
3608 6784 1.620822 AGAAATGGGTCTTGTGCCAC 58.379 50.000 0.00 0.00 0.00 5.01
3609 6785 1.133513 AGAAATGGGTCTTGTGCCACA 60.134 47.619 0.00 0.00 0.00 4.17
3610 6786 1.895131 GAAATGGGTCTTGTGCCACAT 59.105 47.619 0.00 0.00 0.00 3.21
3611 6787 2.897271 AATGGGTCTTGTGCCACATA 57.103 45.000 0.00 0.00 0.00 2.29
3612 6788 2.128771 ATGGGTCTTGTGCCACATAC 57.871 50.000 0.00 0.00 0.00 2.39
3613 6789 1.064003 TGGGTCTTGTGCCACATACT 58.936 50.000 0.00 0.00 0.00 2.12
3614 6790 1.423541 TGGGTCTTGTGCCACATACTT 59.576 47.619 0.00 0.00 0.00 2.24
3615 6791 2.158534 TGGGTCTTGTGCCACATACTTT 60.159 45.455 0.00 0.00 0.00 2.66
3616 6792 2.488153 GGGTCTTGTGCCACATACTTTC 59.512 50.000 0.00 0.00 0.00 2.62
3617 6793 3.412386 GGTCTTGTGCCACATACTTTCT 58.588 45.455 0.00 0.00 0.00 2.52
3618 6794 3.189287 GGTCTTGTGCCACATACTTTCTG 59.811 47.826 0.00 0.00 0.00 3.02
3619 6795 4.065088 GTCTTGTGCCACATACTTTCTGA 58.935 43.478 0.00 0.00 0.00 3.27
3620 6796 4.697352 GTCTTGTGCCACATACTTTCTGAT 59.303 41.667 0.00 0.00 0.00 2.90
3621 6797 5.182001 GTCTTGTGCCACATACTTTCTGATT 59.818 40.000 0.00 0.00 0.00 2.57
3622 6798 6.371548 GTCTTGTGCCACATACTTTCTGATTA 59.628 38.462 0.00 0.00 0.00 1.75
3623 6799 6.595326 TCTTGTGCCACATACTTTCTGATTAG 59.405 38.462 0.00 0.00 0.00 1.73
3624 6800 4.635765 TGTGCCACATACTTTCTGATTAGC 59.364 41.667 0.00 0.00 0.00 3.09
3625 6801 3.871006 TGCCACATACTTTCTGATTAGCG 59.129 43.478 0.00 0.00 0.00 4.26
3626 6802 3.871594 GCCACATACTTTCTGATTAGCGT 59.128 43.478 0.00 0.00 0.00 5.07
3627 6803 4.332819 GCCACATACTTTCTGATTAGCGTT 59.667 41.667 0.00 0.00 0.00 4.84
3628 6804 5.163754 GCCACATACTTTCTGATTAGCGTTT 60.164 40.000 0.00 0.00 0.00 3.60
3629 6805 6.036735 GCCACATACTTTCTGATTAGCGTTTA 59.963 38.462 0.00 0.00 0.00 2.01
3630 6806 7.254795 GCCACATACTTTCTGATTAGCGTTTAT 60.255 37.037 0.00 0.00 0.00 1.40
3631 6807 8.612619 CCACATACTTTCTGATTAGCGTTTATT 58.387 33.333 0.00 0.00 0.00 1.40
3632 6808 9.425893 CACATACTTTCTGATTAGCGTTTATTG 57.574 33.333 0.00 0.00 0.00 1.90
3633 6809 9.378551 ACATACTTTCTGATTAGCGTTTATTGA 57.621 29.630 0.00 0.00 0.00 2.57
3637 6813 8.398665 ACTTTCTGATTAGCGTTTATTGAATCC 58.601 33.333 0.00 0.00 0.00 3.01
3638 6814 7.857734 TTCTGATTAGCGTTTATTGAATCCA 57.142 32.000 0.00 0.00 0.00 3.41
3639 6815 7.857734 TCTGATTAGCGTTTATTGAATCCAA 57.142 32.000 0.00 0.00 36.61 3.53
3640 6816 8.450578 TCTGATTAGCGTTTATTGAATCCAAT 57.549 30.769 0.00 0.00 44.56 3.16
3641 6817 8.559536 TCTGATTAGCGTTTATTGAATCCAATC 58.440 33.333 0.00 0.00 41.74 2.67
3642 6818 7.648142 TGATTAGCGTTTATTGAATCCAATCC 58.352 34.615 0.00 0.00 41.74 3.01
3643 6819 4.918810 AGCGTTTATTGAATCCAATCCC 57.081 40.909 0.00 0.00 41.74 3.85
3644 6820 4.536765 AGCGTTTATTGAATCCAATCCCT 58.463 39.130 0.00 0.00 41.74 4.20
3645 6821 5.690865 AGCGTTTATTGAATCCAATCCCTA 58.309 37.500 0.00 0.00 41.74 3.53
3646 6822 6.306987 AGCGTTTATTGAATCCAATCCCTAT 58.693 36.000 0.00 0.00 41.74 2.57
3647 6823 7.458397 AGCGTTTATTGAATCCAATCCCTATA 58.542 34.615 0.00 0.00 41.74 1.31
3648 6824 7.390718 AGCGTTTATTGAATCCAATCCCTATAC 59.609 37.037 0.00 0.00 41.74 1.47
3649 6825 7.361799 GCGTTTATTGAATCCAATCCCTATACC 60.362 40.741 0.00 0.00 41.74 2.73
3650 6826 7.663905 CGTTTATTGAATCCAATCCCTATACCA 59.336 37.037 0.00 0.00 41.74 3.25
3651 6827 8.793592 GTTTATTGAATCCAATCCCTATACCAC 58.206 37.037 0.00 0.00 41.74 4.16
3652 6828 4.993705 TGAATCCAATCCCTATACCACC 57.006 45.455 0.00 0.00 0.00 4.61
3653 6829 3.655777 TGAATCCAATCCCTATACCACCC 59.344 47.826 0.00 0.00 0.00 4.61
3654 6830 2.127651 TCCAATCCCTATACCACCCC 57.872 55.000 0.00 0.00 0.00 4.95
3655 6831 0.690762 CCAATCCCTATACCACCCCG 59.309 60.000 0.00 0.00 0.00 5.73
3656 6832 1.430992 CAATCCCTATACCACCCCGT 58.569 55.000 0.00 0.00 0.00 5.28
3657 6833 1.772453 CAATCCCTATACCACCCCGTT 59.228 52.381 0.00 0.00 0.00 4.44
3658 6834 2.974099 CAATCCCTATACCACCCCGTTA 59.026 50.000 0.00 0.00 0.00 3.18
3659 6835 2.386829 TCCCTATACCACCCCGTTAG 57.613 55.000 0.00 0.00 0.00 2.34
3808 8672 5.621104 CGCCATTGTAGGATCTATCAGAGAC 60.621 48.000 0.00 0.00 36.87 3.36
3841 8705 4.341806 TCACTTCATTGCATTCCACTTGTT 59.658 37.500 0.00 0.00 0.00 2.83
4016 8880 2.738314 GTGTGAAATGCCCTGATTTTGC 59.262 45.455 0.00 0.00 0.00 3.68
4133 9001 8.103305 AGAGGAAAAAGAACAGCATGATAACTA 58.897 33.333 0.00 0.00 39.69 2.24
4165 9035 1.338136 TAGCTGGGAACTAGCAGGCC 61.338 60.000 7.35 0.00 43.53 5.19
4319 9190 7.550196 ACCATGTGCTCAAATGGATTATTTTTC 59.450 33.333 22.40 0.00 45.29 2.29
4484 9361 0.688087 CGGGACTAAAGGCCTCCTCT 60.688 60.000 5.23 0.00 30.89 3.69
4715 9637 0.389426 GAGCACGCTTAACTTCCGGA 60.389 55.000 0.00 0.00 0.00 5.14
5190 10212 3.537793 AACTTTTTCATCCGAGTTCGC 57.462 42.857 0.00 0.00 38.18 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.659092 CCGCGTGCAAGCCTTTCA 61.659 61.111 19.11 0.00 0.00 2.69
114 120 3.584848 AGAAGACCAACTAGGATGCACTT 59.415 43.478 0.00 1.83 41.22 3.16
163 169 0.981183 ACTTGCGGAGGGTATGTTCA 59.019 50.000 0.00 0.00 0.00 3.18
166 172 1.198759 ACCACTTGCGGAGGGTATGT 61.199 55.000 0.00 0.00 30.14 2.29
212 218 4.569943 CATATATTGTGGAACGGAGGGAG 58.430 47.826 0.00 0.00 42.39 4.30
291 298 6.762661 ACTTGACTTCCATTTGTCCAAAAATG 59.237 34.615 0.00 3.25 43.94 2.32
312 319 5.264395 ACTCCCTCCATTCCAAAATACTTG 58.736 41.667 0.00 0.00 0.00 3.16
313 320 5.536497 ACTCCCTCCATTCCAAAATACTT 57.464 39.130 0.00 0.00 0.00 2.24
326 333 1.573108 CTTGCTTCCTACTCCCTCCA 58.427 55.000 0.00 0.00 0.00 3.86
884 2804 2.355837 TTTCTCTGCGAGCGCGTT 60.356 55.556 12.44 0.00 45.51 4.84
1431 3413 0.038166 GCCACCCACCATCTTCTTCA 59.962 55.000 0.00 0.00 0.00 3.02
1840 4361 4.763279 GGAAACTCGGTAAAGATTTTCCCA 59.237 41.667 14.17 0.00 45.98 4.37
1849 4891 5.404946 TCATCTAACGGAAACTCGGTAAAG 58.595 41.667 0.00 0.00 31.54 1.85
2075 5119 1.466167 CTGTCTGCCAAGTTTGATCGG 59.534 52.381 0.00 0.00 0.00 4.18
2111 5155 3.744238 TCACCGAGTTCATTCTGTCAA 57.256 42.857 0.00 0.00 0.00 3.18
2472 5613 1.728971 GATCATTGCTATTCTCCGCGG 59.271 52.381 22.12 22.12 0.00 6.46
2476 5617 5.931146 ACGAATCTGATCATTGCTATTCTCC 59.069 40.000 0.00 0.00 0.00 3.71
2880 6050 5.649782 AATTTGCCACACTTCTAATGGAG 57.350 39.130 0.00 0.00 35.33 3.86
2947 6119 1.803334 ACCGCAATTTCTGTTCGCTA 58.197 45.000 0.00 0.00 0.00 4.26
2948 6120 1.732259 CTACCGCAATTTCTGTTCGCT 59.268 47.619 0.00 0.00 0.00 4.93
3219 6394 9.686683 ACTTTCATTATATTTGAGCTAGGTTGT 57.313 29.630 0.00 0.00 0.00 3.32
3386 6562 6.321181 ACAAGTGTCAAAGGTACAAATGTCAT 59.679 34.615 0.00 0.00 0.00 3.06
3387 6563 5.650266 ACAAGTGTCAAAGGTACAAATGTCA 59.350 36.000 0.00 0.00 0.00 3.58
3388 6564 6.131544 ACAAGTGTCAAAGGTACAAATGTC 57.868 37.500 0.00 0.00 0.00 3.06
3389 6565 6.131544 GACAAGTGTCAAAGGTACAAATGT 57.868 37.500 6.57 0.00 44.18 2.71
3402 6578 3.899296 GCACCTGCATTGACAAGTGTCA 61.899 50.000 10.06 10.06 45.90 3.58
3403 6579 1.335324 GCACCTGCATTGACAAGTGTC 60.335 52.381 4.43 4.43 42.12 3.67
3404 6580 0.670162 GCACCTGCATTGACAAGTGT 59.330 50.000 6.43 0.00 41.59 3.55
3405 6581 0.956633 AGCACCTGCATTGACAAGTG 59.043 50.000 0.00 0.00 45.16 3.16
3406 6582 1.338973 CAAGCACCTGCATTGACAAGT 59.661 47.619 0.00 0.00 45.16 3.16
3407 6583 1.610038 TCAAGCACCTGCATTGACAAG 59.390 47.619 0.00 0.00 45.16 3.16
3408 6584 1.689984 TCAAGCACCTGCATTGACAA 58.310 45.000 0.00 0.00 45.16 3.18
3409 6585 1.542472 CATCAAGCACCTGCATTGACA 59.458 47.619 1.92 0.00 45.16 3.58
3410 6586 1.814394 TCATCAAGCACCTGCATTGAC 59.186 47.619 1.92 0.00 45.16 3.18
3411 6587 2.089201 CTCATCAAGCACCTGCATTGA 58.911 47.619 2.36 2.36 45.16 2.57
3412 6588 2.089201 TCTCATCAAGCACCTGCATTG 58.911 47.619 0.00 2.22 45.16 2.82
3413 6589 2.502142 TCTCATCAAGCACCTGCATT 57.498 45.000 0.00 0.00 45.16 3.56
3414 6590 2.172930 AGATCTCATCAAGCACCTGCAT 59.827 45.455 0.00 0.00 45.16 3.96
3415 6591 1.558294 AGATCTCATCAAGCACCTGCA 59.442 47.619 0.00 0.00 45.16 4.41
3416 6592 1.941294 CAGATCTCATCAAGCACCTGC 59.059 52.381 0.00 0.00 42.49 4.85
3417 6593 3.263489 ACAGATCTCATCAAGCACCTG 57.737 47.619 0.00 0.00 0.00 4.00
3418 6594 3.996921 AACAGATCTCATCAAGCACCT 57.003 42.857 0.00 0.00 0.00 4.00
3419 6595 5.363101 TCATAACAGATCTCATCAAGCACC 58.637 41.667 0.00 0.00 0.00 5.01
3420 6596 7.353497 CAATCATAACAGATCTCATCAAGCAC 58.647 38.462 0.00 0.00 0.00 4.40
3421 6597 6.017357 GCAATCATAACAGATCTCATCAAGCA 60.017 38.462 0.00 0.00 0.00 3.91
3422 6598 6.372185 GCAATCATAACAGATCTCATCAAGC 58.628 40.000 0.00 0.00 0.00 4.01
3423 6599 6.423001 TCGCAATCATAACAGATCTCATCAAG 59.577 38.462 0.00 0.00 0.00 3.02
3424 6600 6.282930 TCGCAATCATAACAGATCTCATCAA 58.717 36.000 0.00 0.00 0.00 2.57
3425 6601 5.846203 TCGCAATCATAACAGATCTCATCA 58.154 37.500 0.00 0.00 0.00 3.07
3426 6602 6.964741 ATCGCAATCATAACAGATCTCATC 57.035 37.500 0.00 0.00 0.00 2.92
3427 6603 6.148976 CCAATCGCAATCATAACAGATCTCAT 59.851 38.462 0.00 0.00 0.00 2.90
3428 6604 5.467735 CCAATCGCAATCATAACAGATCTCA 59.532 40.000 0.00 0.00 0.00 3.27
3429 6605 5.698089 TCCAATCGCAATCATAACAGATCTC 59.302 40.000 0.00 0.00 0.00 2.75
3430 6606 5.614308 TCCAATCGCAATCATAACAGATCT 58.386 37.500 0.00 0.00 0.00 2.75
3431 6607 5.929697 TCCAATCGCAATCATAACAGATC 57.070 39.130 0.00 0.00 0.00 2.75
3432 6608 5.182570 CCATCCAATCGCAATCATAACAGAT 59.817 40.000 0.00 0.00 0.00 2.90
3433 6609 4.516321 CCATCCAATCGCAATCATAACAGA 59.484 41.667 0.00 0.00 0.00 3.41
3434 6610 4.790878 CCATCCAATCGCAATCATAACAG 58.209 43.478 0.00 0.00 0.00 3.16
3435 6611 3.004629 GCCATCCAATCGCAATCATAACA 59.995 43.478 0.00 0.00 0.00 2.41
3436 6612 3.568538 GCCATCCAATCGCAATCATAAC 58.431 45.455 0.00 0.00 0.00 1.89
3437 6613 2.557924 GGCCATCCAATCGCAATCATAA 59.442 45.455 0.00 0.00 0.00 1.90
3438 6614 2.161855 GGCCATCCAATCGCAATCATA 58.838 47.619 0.00 0.00 0.00 2.15
3439 6615 0.963962 GGCCATCCAATCGCAATCAT 59.036 50.000 0.00 0.00 0.00 2.45
3440 6616 1.108727 GGGCCATCCAATCGCAATCA 61.109 55.000 4.39 0.00 35.00 2.57
3441 6617 1.662044 GGGCCATCCAATCGCAATC 59.338 57.895 4.39 0.00 35.00 2.67
3442 6618 1.833934 GGGGCCATCCAATCGCAAT 60.834 57.895 4.39 0.00 37.22 3.56
3443 6619 1.640593 TAGGGGCCATCCAATCGCAA 61.641 55.000 4.39 0.00 37.22 4.85
3444 6620 2.055689 CTAGGGGCCATCCAATCGCA 62.056 60.000 4.39 0.00 37.22 5.10
3445 6621 1.302832 CTAGGGGCCATCCAATCGC 60.303 63.158 4.39 0.00 37.22 4.58
3446 6622 0.987294 ATCTAGGGGCCATCCAATCG 59.013 55.000 4.39 0.00 37.22 3.34
3447 6623 2.912956 TGTATCTAGGGGCCATCCAATC 59.087 50.000 4.39 0.00 37.22 2.67
3448 6624 2.644798 GTGTATCTAGGGGCCATCCAAT 59.355 50.000 4.39 0.00 37.22 3.16
3449 6625 2.054799 GTGTATCTAGGGGCCATCCAA 58.945 52.381 4.39 0.00 37.22 3.53
3450 6626 1.061735 TGTGTATCTAGGGGCCATCCA 60.062 52.381 4.39 0.00 37.22 3.41
3451 6627 1.625818 CTGTGTATCTAGGGGCCATCC 59.374 57.143 4.39 0.00 0.00 3.51
3452 6628 2.330216 ACTGTGTATCTAGGGGCCATC 58.670 52.381 4.39 0.00 0.00 3.51
3453 6629 2.496679 ACTGTGTATCTAGGGGCCAT 57.503 50.000 4.39 0.00 0.00 4.40
3454 6630 2.246588 ACTACTGTGTATCTAGGGGCCA 59.753 50.000 4.39 0.00 0.00 5.36
3455 6631 2.960163 ACTACTGTGTATCTAGGGGCC 58.040 52.381 0.00 0.00 0.00 5.80
3456 6632 3.825585 GGTACTACTGTGTATCTAGGGGC 59.174 52.174 0.00 0.00 0.00 5.80
3457 6633 5.321934 AGGTACTACTGTGTATCTAGGGG 57.678 47.826 0.00 0.00 36.02 4.79
3458 6634 6.262720 GTGAAGGTACTACTGTGTATCTAGGG 59.737 46.154 0.00 0.00 38.49 3.53
3459 6635 7.055378 AGTGAAGGTACTACTGTGTATCTAGG 58.945 42.308 0.00 0.00 38.49 3.02
3460 6636 9.263538 CTAGTGAAGGTACTACTGTGTATCTAG 57.736 40.741 0.00 0.00 38.49 2.43
3461 6637 7.714377 GCTAGTGAAGGTACTACTGTGTATCTA 59.286 40.741 0.00 0.00 38.49 1.98
3462 6638 6.543100 GCTAGTGAAGGTACTACTGTGTATCT 59.457 42.308 0.00 0.00 38.49 1.98
3463 6639 6.318144 TGCTAGTGAAGGTACTACTGTGTATC 59.682 42.308 0.00 0.00 38.49 2.24
3464 6640 6.185511 TGCTAGTGAAGGTACTACTGTGTAT 58.814 40.000 0.00 0.00 38.49 2.29
3465 6641 5.563592 TGCTAGTGAAGGTACTACTGTGTA 58.436 41.667 0.00 0.00 38.49 2.90
3466 6642 4.404640 TGCTAGTGAAGGTACTACTGTGT 58.595 43.478 0.00 0.00 38.49 3.72
3467 6643 4.700692 TCTGCTAGTGAAGGTACTACTGTG 59.299 45.833 0.00 0.00 38.49 3.66
3468 6644 4.919793 TCTGCTAGTGAAGGTACTACTGT 58.080 43.478 0.00 0.00 38.49 3.55
3469 6645 5.221145 CCATCTGCTAGTGAAGGTACTACTG 60.221 48.000 0.00 0.00 38.49 2.74
3470 6646 4.890581 CCATCTGCTAGTGAAGGTACTACT 59.109 45.833 0.00 0.00 38.49 2.57
3471 6647 4.645588 ACCATCTGCTAGTGAAGGTACTAC 59.354 45.833 11.27 0.00 38.49 2.73
3472 6648 4.868268 ACCATCTGCTAGTGAAGGTACTA 58.132 43.478 11.27 0.00 38.49 1.82
3473 6649 5.303078 CATACCATCTGCTAGTGAAGGTACT 59.697 44.000 17.68 9.34 39.54 2.73
3474 6650 5.069251 ACATACCATCTGCTAGTGAAGGTAC 59.931 44.000 17.68 0.00 39.54 3.34
3475 6651 5.069119 CACATACCATCTGCTAGTGAAGGTA 59.931 44.000 17.65 17.65 40.52 3.08
3476 6652 4.033709 ACATACCATCTGCTAGTGAAGGT 58.966 43.478 15.35 15.35 38.75 3.50
3477 6653 4.141846 ACACATACCATCTGCTAGTGAAGG 60.142 45.833 0.00 7.33 0.00 3.46
3478 6654 5.016051 ACACATACCATCTGCTAGTGAAG 57.984 43.478 0.00 0.00 0.00 3.02
3479 6655 6.538945 TTACACATACCATCTGCTAGTGAA 57.461 37.500 0.00 0.00 0.00 3.18
3480 6656 6.538945 TTTACACATACCATCTGCTAGTGA 57.461 37.500 0.00 0.00 0.00 3.41
3481 6657 7.385205 GGTATTTACACATACCATCTGCTAGTG 59.615 40.741 5.19 0.00 45.82 2.74
3482 6658 7.442656 GGTATTTACACATACCATCTGCTAGT 58.557 38.462 5.19 0.00 45.82 2.57
3483 6659 7.891183 GGTATTTACACATACCATCTGCTAG 57.109 40.000 5.19 0.00 45.82 3.42
3519 6695 9.859427 TGCTTGTTCATTTGGAAAATTATAGAG 57.141 29.630 0.00 0.00 37.23 2.43
3523 6699 9.504708 TCAATGCTTGTTCATTTGGAAAATTAT 57.495 25.926 0.00 0.00 37.23 1.28
3524 6700 8.899427 TCAATGCTTGTTCATTTGGAAAATTA 57.101 26.923 0.00 0.00 37.23 1.40
3525 6701 7.499895 ACTCAATGCTTGTTCATTTGGAAAATT 59.500 29.630 0.00 0.00 37.23 1.82
3526 6702 6.993902 ACTCAATGCTTGTTCATTTGGAAAAT 59.006 30.769 0.00 0.00 37.23 1.82
3527 6703 6.347696 ACTCAATGCTTGTTCATTTGGAAAA 58.652 32.000 0.00 0.00 37.23 2.29
3528 6704 5.916318 ACTCAATGCTTGTTCATTTGGAAA 58.084 33.333 0.00 0.00 37.23 3.13
3529 6705 5.534207 ACTCAATGCTTGTTCATTTGGAA 57.466 34.783 0.00 0.00 34.68 3.53
3530 6706 5.302568 AGAACTCAATGCTTGTTCATTTGGA 59.697 36.000 12.91 0.00 41.56 3.53
3531 6707 5.535333 AGAACTCAATGCTTGTTCATTTGG 58.465 37.500 12.91 0.00 41.56 3.28
3532 6708 6.073980 CCAAGAACTCAATGCTTGTTCATTTG 60.074 38.462 12.91 10.07 41.56 2.32
3533 6709 5.987347 CCAAGAACTCAATGCTTGTTCATTT 59.013 36.000 12.91 1.81 41.56 2.32
3534 6710 5.302568 TCCAAGAACTCAATGCTTGTTCATT 59.697 36.000 12.91 0.00 41.56 2.57
3535 6711 4.828939 TCCAAGAACTCAATGCTTGTTCAT 59.171 37.500 12.91 2.62 41.56 2.57
3536 6712 4.036734 GTCCAAGAACTCAATGCTTGTTCA 59.963 41.667 12.91 0.00 41.56 3.18
3537 6713 4.540824 GTCCAAGAACTCAATGCTTGTTC 58.459 43.478 0.00 0.00 37.82 3.18
3538 6714 3.319122 GGTCCAAGAACTCAATGCTTGTT 59.681 43.478 0.00 0.00 37.82 2.83
3539 6715 2.887152 GGTCCAAGAACTCAATGCTTGT 59.113 45.455 0.00 0.00 37.82 3.16
3540 6716 2.886523 TGGTCCAAGAACTCAATGCTTG 59.113 45.455 0.00 0.00 38.90 4.01
3541 6717 3.228188 TGGTCCAAGAACTCAATGCTT 57.772 42.857 0.00 0.00 0.00 3.91
3542 6718 2.957402 TGGTCCAAGAACTCAATGCT 57.043 45.000 0.00 0.00 0.00 3.79
3543 6719 5.471456 CCTATATGGTCCAAGAACTCAATGC 59.529 44.000 0.00 0.00 0.00 3.56
3544 6720 5.471456 GCCTATATGGTCCAAGAACTCAATG 59.529 44.000 0.00 0.00 38.35 2.82
3545 6721 5.132648 TGCCTATATGGTCCAAGAACTCAAT 59.867 40.000 0.00 0.00 38.35 2.57
3546 6722 4.473196 TGCCTATATGGTCCAAGAACTCAA 59.527 41.667 0.00 0.00 38.35 3.02
3547 6723 4.037222 TGCCTATATGGTCCAAGAACTCA 58.963 43.478 0.00 0.00 38.35 3.41
3548 6724 4.141711 TGTGCCTATATGGTCCAAGAACTC 60.142 45.833 0.00 0.00 38.35 3.01
3549 6725 3.780294 TGTGCCTATATGGTCCAAGAACT 59.220 43.478 0.00 0.00 38.35 3.01
3550 6726 4.150897 TGTGCCTATATGGTCCAAGAAC 57.849 45.455 0.00 0.00 38.35 3.01
3551 6727 4.853468 TTGTGCCTATATGGTCCAAGAA 57.147 40.909 0.00 0.00 38.35 2.52
3552 6728 6.508030 TTATTGTGCCTATATGGTCCAAGA 57.492 37.500 0.00 0.00 38.35 3.02
3553 6729 8.862325 TTATTATTGTGCCTATATGGTCCAAG 57.138 34.615 0.00 0.00 38.35 3.61
3554 6730 9.295825 CTTTATTATTGTGCCTATATGGTCCAA 57.704 33.333 0.00 0.00 38.35 3.53
3555 6731 8.664992 TCTTTATTATTGTGCCTATATGGTCCA 58.335 33.333 0.00 0.00 38.35 4.02
3556 6732 9.515226 TTCTTTATTATTGTGCCTATATGGTCC 57.485 33.333 0.00 0.00 38.35 4.46
3577 6753 9.093458 ACAAGACCCATTTCTATGAAATTCTTT 57.907 29.630 12.17 5.86 33.37 2.52
3578 6754 8.526147 CACAAGACCCATTTCTATGAAATTCTT 58.474 33.333 10.31 10.31 33.37 2.52
3579 6755 7.363268 GCACAAGACCCATTTCTATGAAATTCT 60.363 37.037 3.13 2.45 33.37 2.40
3580 6756 6.753744 GCACAAGACCCATTTCTATGAAATTC 59.246 38.462 3.13 0.45 33.37 2.17
3581 6757 6.351286 GGCACAAGACCCATTTCTATGAAATT 60.351 38.462 3.13 0.00 33.37 1.82
3582 6758 5.127682 GGCACAAGACCCATTTCTATGAAAT 59.872 40.000 0.25 0.25 33.37 2.17
3583 6759 4.462483 GGCACAAGACCCATTTCTATGAAA 59.538 41.667 0.00 0.00 33.37 2.69
3584 6760 4.016444 GGCACAAGACCCATTTCTATGAA 58.984 43.478 0.00 0.00 33.37 2.57
3585 6761 3.010027 TGGCACAAGACCCATTTCTATGA 59.990 43.478 0.00 0.00 30.86 2.15
3586 6762 3.129287 GTGGCACAAGACCCATTTCTATG 59.871 47.826 13.86 0.00 44.16 2.23
3587 6763 3.245229 TGTGGCACAAGACCCATTTCTAT 60.245 43.478 19.74 0.00 44.16 1.98
3588 6764 2.107378 TGTGGCACAAGACCCATTTCTA 59.893 45.455 19.74 0.00 44.16 2.10
3589 6765 1.133513 TGTGGCACAAGACCCATTTCT 60.134 47.619 19.74 0.00 44.16 2.52
3590 6766 1.327303 TGTGGCACAAGACCCATTTC 58.673 50.000 19.74 0.00 44.16 2.17
3591 6767 2.014010 ATGTGGCACAAGACCCATTT 57.986 45.000 25.95 0.93 44.16 2.32
3592 6768 2.041620 AGTATGTGGCACAAGACCCATT 59.958 45.455 25.95 7.92 44.16 3.16
3593 6769 1.635487 AGTATGTGGCACAAGACCCAT 59.365 47.619 25.95 8.72 44.16 4.00
3594 6770 1.064003 AGTATGTGGCACAAGACCCA 58.936 50.000 25.95 0.00 44.16 4.51
3595 6771 2.200373 AAGTATGTGGCACAAGACCC 57.800 50.000 25.95 10.45 44.16 4.46
3596 6772 3.189287 CAGAAAGTATGTGGCACAAGACC 59.811 47.826 25.95 12.23 44.16 3.85
3597 6773 4.065088 TCAGAAAGTATGTGGCACAAGAC 58.935 43.478 25.95 23.52 44.16 3.01
3598 6774 4.350368 TCAGAAAGTATGTGGCACAAGA 57.650 40.909 25.95 13.04 44.16 3.02
3599 6775 5.633830 AATCAGAAAGTATGTGGCACAAG 57.366 39.130 25.95 7.29 44.16 3.16
3600 6776 5.123820 GCTAATCAGAAAGTATGTGGCACAA 59.876 40.000 25.95 11.25 44.16 3.33
3601 6777 4.635765 GCTAATCAGAAAGTATGTGGCACA 59.364 41.667 24.36 24.36 0.00 4.57
3602 6778 4.260375 CGCTAATCAGAAAGTATGTGGCAC 60.260 45.833 11.55 11.55 0.00 5.01
3603 6779 3.871006 CGCTAATCAGAAAGTATGTGGCA 59.129 43.478 0.00 0.00 0.00 4.92
3604 6780 3.871594 ACGCTAATCAGAAAGTATGTGGC 59.128 43.478 0.00 0.00 0.00 5.01
3605 6781 6.422776 AAACGCTAATCAGAAAGTATGTGG 57.577 37.500 0.00 0.00 0.00 4.17
3606 6782 9.425893 CAATAAACGCTAATCAGAAAGTATGTG 57.574 33.333 0.00 0.00 0.00 3.21
3607 6783 9.378551 TCAATAAACGCTAATCAGAAAGTATGT 57.621 29.630 0.00 0.00 0.00 2.29
3611 6787 8.398665 GGATTCAATAAACGCTAATCAGAAAGT 58.601 33.333 0.00 0.00 0.00 2.66
3612 6788 8.397906 TGGATTCAATAAACGCTAATCAGAAAG 58.602 33.333 0.00 0.00 0.00 2.62
3613 6789 8.275015 TGGATTCAATAAACGCTAATCAGAAA 57.725 30.769 0.00 0.00 0.00 2.52
3614 6790 7.857734 TGGATTCAATAAACGCTAATCAGAA 57.142 32.000 0.00 0.00 0.00 3.02
3615 6791 7.857734 TTGGATTCAATAAACGCTAATCAGA 57.142 32.000 0.00 0.00 0.00 3.27
3616 6792 7.805071 GGATTGGATTCAATAAACGCTAATCAG 59.195 37.037 0.00 0.00 43.08 2.90
3617 6793 7.255451 GGGATTGGATTCAATAAACGCTAATCA 60.255 37.037 0.00 0.00 43.08 2.57
3618 6794 7.040409 AGGGATTGGATTCAATAAACGCTAATC 60.040 37.037 0.00 0.00 43.08 1.75
3619 6795 6.777580 AGGGATTGGATTCAATAAACGCTAAT 59.222 34.615 0.00 0.00 43.08 1.73
3620 6796 6.126409 AGGGATTGGATTCAATAAACGCTAA 58.874 36.000 0.00 0.00 43.08 3.09
3621 6797 5.690865 AGGGATTGGATTCAATAAACGCTA 58.309 37.500 0.00 0.00 43.08 4.26
3622 6798 4.536765 AGGGATTGGATTCAATAAACGCT 58.463 39.130 0.00 0.00 43.08 5.07
3623 6799 4.918810 AGGGATTGGATTCAATAAACGC 57.081 40.909 0.00 0.00 43.08 4.84
3624 6800 7.663905 TGGTATAGGGATTGGATTCAATAAACG 59.336 37.037 0.00 0.00 43.08 3.60
3625 6801 8.793592 GTGGTATAGGGATTGGATTCAATAAAC 58.206 37.037 0.00 0.00 43.08 2.01
3626 6802 7.947890 GGTGGTATAGGGATTGGATTCAATAAA 59.052 37.037 0.00 0.00 43.08 1.40
3627 6803 7.466804 GGTGGTATAGGGATTGGATTCAATAA 58.533 38.462 0.00 0.00 43.08 1.40
3628 6804 6.011981 GGGTGGTATAGGGATTGGATTCAATA 60.012 42.308 0.00 0.00 43.08 1.90
3629 6805 5.222337 GGGTGGTATAGGGATTGGATTCAAT 60.222 44.000 0.00 0.00 45.45 2.57
3630 6806 4.105697 GGGTGGTATAGGGATTGGATTCAA 59.894 45.833 0.00 0.00 37.28 2.69
3631 6807 3.655777 GGGTGGTATAGGGATTGGATTCA 59.344 47.826 0.00 0.00 0.00 2.57
3632 6808 3.010250 GGGGTGGTATAGGGATTGGATTC 59.990 52.174 0.00 0.00 0.00 2.52
3633 6809 2.993863 GGGGTGGTATAGGGATTGGATT 59.006 50.000 0.00 0.00 0.00 3.01
3634 6810 2.644151 GGGGTGGTATAGGGATTGGAT 58.356 52.381 0.00 0.00 0.00 3.41
3635 6811 1.763558 CGGGGTGGTATAGGGATTGGA 60.764 57.143 0.00 0.00 0.00 3.53
3636 6812 0.690762 CGGGGTGGTATAGGGATTGG 59.309 60.000 0.00 0.00 0.00 3.16
3637 6813 1.430992 ACGGGGTGGTATAGGGATTG 58.569 55.000 0.00 0.00 0.00 2.67
3638 6814 2.201523 AACGGGGTGGTATAGGGATT 57.798 50.000 0.00 0.00 0.00 3.01
3639 6815 2.180751 ACTAACGGGGTGGTATAGGGAT 59.819 50.000 0.00 0.00 0.00 3.85
3640 6816 1.575304 ACTAACGGGGTGGTATAGGGA 59.425 52.381 0.00 0.00 0.00 4.20
3641 6817 2.092598 ACTAACGGGGTGGTATAGGG 57.907 55.000 0.00 0.00 0.00 3.53
3642 6818 4.410099 TGATACTAACGGGGTGGTATAGG 58.590 47.826 0.00 0.00 0.00 2.57
3643 6819 5.623824 GCATGATACTAACGGGGTGGTATAG 60.624 48.000 0.00 0.00 0.00 1.31
3644 6820 4.221262 GCATGATACTAACGGGGTGGTATA 59.779 45.833 0.00 0.00 0.00 1.47
3645 6821 3.007614 GCATGATACTAACGGGGTGGTAT 59.992 47.826 0.00 0.00 0.00 2.73
3646 6822 2.366266 GCATGATACTAACGGGGTGGTA 59.634 50.000 0.00 0.00 0.00 3.25
3647 6823 1.140252 GCATGATACTAACGGGGTGGT 59.860 52.381 0.00 0.00 0.00 4.16
3648 6824 1.416401 AGCATGATACTAACGGGGTGG 59.584 52.381 0.00 0.00 0.00 4.61
3649 6825 2.872245 CAAGCATGATACTAACGGGGTG 59.128 50.000 0.00 0.00 0.00 4.61
3650 6826 2.158813 CCAAGCATGATACTAACGGGGT 60.159 50.000 0.00 0.00 0.00 4.95
3651 6827 2.494059 CCAAGCATGATACTAACGGGG 58.506 52.381 0.00 0.00 0.00 5.73
3652 6828 2.494059 CCCAAGCATGATACTAACGGG 58.506 52.381 0.00 0.00 0.00 5.28
3653 6829 1.873591 GCCCAAGCATGATACTAACGG 59.126 52.381 0.00 0.00 39.53 4.44
3654 6830 2.560504 TGCCCAAGCATGATACTAACG 58.439 47.619 0.00 0.00 46.52 3.18
3808 8672 3.265791 GCAATGAAGTGAGTAGAGGTGG 58.734 50.000 0.00 0.00 0.00 4.61
3841 8705 5.086104 GGTGCAGACCTATTCAGTTCTTA 57.914 43.478 0.00 0.00 39.47 2.10
4016 8880 3.746900 TCACCAGTGATGCTCATCG 57.253 52.632 0.00 0.00 40.63 3.84
4246 9117 9.405587 GCAATACAATACAAACTTGTACAACAT 57.594 29.630 3.59 0.00 45.47 2.71
4319 9190 0.309922 CAGTGGCTTTGTGCAGTCTG 59.690 55.000 0.00 0.00 45.15 3.51
4715 9637 5.189934 ACTTGGAAACGAGGGAGAATAGAAT 59.810 40.000 0.00 0.00 46.96 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.