Multiple sequence alignment - TraesCS5D01G305000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G305000 chr5D 100.000 9021 0 0 1 9021 399976552 399985572 0.000000e+00 16659.0
1 TraesCS5D01G305000 chr5B 95.045 2119 79 15 6309 8409 480161849 480163959 0.000000e+00 3308.0
2 TraesCS5D01G305000 chr5B 93.867 1973 85 13 4205 6163 480159805 480161755 0.000000e+00 2940.0
3 TraesCS5D01G305000 chr5B 96.725 1649 52 2 2535 4181 480158002 480159650 0.000000e+00 2745.0
4 TraesCS5D01G305000 chr5B 85.282 992 68 38 768 1725 480156290 480157237 0.000000e+00 952.0
5 TraesCS5D01G305000 chr5B 94.576 590 26 6 1899 2485 480157236 480157822 0.000000e+00 907.0
6 TraesCS5D01G305000 chr5B 93.333 225 2 3 8797 9021 480170397 480170608 4.060000e-83 320.0
7 TraesCS5D01G305000 chr5B 89.163 203 13 4 8603 8798 480170106 480170306 2.520000e-60 244.0
8 TraesCS5D01G305000 chr5B 98.246 57 1 0 2482 2538 480157911 480157967 5.760000e-17 100.0
9 TraesCS5D01G305000 chr5B 91.803 61 5 0 8794 8854 480164463 480164523 1.610000e-12 86.1
10 TraesCS5D01G305000 chr5A 93.456 2124 83 24 6202 8314 505594971 505597049 0.000000e+00 3101.0
11 TraesCS5D01G305000 chr5A 96.828 1671 52 1 2535 4204 505590647 505592317 0.000000e+00 2791.0
12 TraesCS5D01G305000 chr5A 94.901 1667 75 8 4205 5869 505592486 505594144 0.000000e+00 2599.0
13 TraesCS5D01G305000 chr5A 95.417 480 19 2 2060 2538 505590129 505590606 0.000000e+00 761.0
14 TraesCS5D01G305000 chr5A 89.117 487 38 8 8427 8907 505597280 505597757 7.800000e-165 592.0
15 TraesCS5D01G305000 chr5A 82.661 744 46 23 768 1455 505589008 505589724 4.690000e-162 582.0
16 TraesCS5D01G305000 chr5A 96.000 300 12 0 5867 6166 505594257 505594556 1.050000e-133 488.0
17 TraesCS5D01G305000 chr5A 79.909 219 19 10 1632 1829 505589909 505590123 4.390000e-28 137.0
18 TraesCS5D01G305000 chr5A 89.423 104 3 5 1406 1507 505589725 505589822 3.420000e-24 124.0
19 TraesCS5D01G305000 chr5A 92.424 66 5 0 8344 8409 505597053 505597118 2.680000e-15 95.3
20 TraesCS5D01G305000 chr1D 93.495 784 32 9 1 766 303307338 303308120 0.000000e+00 1147.0
21 TraesCS5D01G305000 chr1D 97.143 35 1 0 4167 4201 298570176 298570210 9.780000e-05 60.2
22 TraesCS5D01G305000 chr3D 92.560 793 36 15 1 771 575862457 575861666 0.000000e+00 1116.0
23 TraesCS5D01G305000 chr3D 91.970 797 32 8 1 766 396432098 396431303 0.000000e+00 1088.0
24 TraesCS5D01G305000 chr3D 91.940 794 33 8 1 770 462457283 462458069 0.000000e+00 1083.0
25 TraesCS5D01G305000 chr3D 91.625 800 34 10 2 770 83388017 83388814 0.000000e+00 1075.0
26 TraesCS5D01G305000 chr3D 92.918 706 32 8 76 766 14814793 14815495 0.000000e+00 1011.0
27 TraesCS5D01G305000 chr3D 88.280 785 65 15 1 766 43736890 43736114 0.000000e+00 915.0
28 TraesCS5D01G305000 chr3D 90.557 413 20 5 372 766 461418457 461418868 6.200000e-146 529.0
29 TraesCS5D01G305000 chr3D 89.884 346 17 5 442 770 352376135 352375791 6.470000e-116 429.0
30 TraesCS5D01G305000 chr3D 97.297 37 1 0 4167 4203 16619139 16619175 7.560000e-06 63.9
31 TraesCS5D01G305000 chr4D 92.602 784 43 9 1 771 9298423 9299204 0.000000e+00 1112.0
32 TraesCS5D01G305000 chr4D 92.395 789 36 7 1 766 58652715 58651928 0.000000e+00 1103.0
33 TraesCS5D01G305000 chr4D 87.209 86 1 6 4118 4203 382323739 382323664 1.250000e-13 89.8
34 TraesCS5D01G305000 chr6D 92.415 791 33 8 1 766 388145271 388144483 0.000000e+00 1103.0
35 TraesCS5D01G305000 chr7D 93.534 696 25 9 1 682 15025237 15024548 0.000000e+00 1018.0
36 TraesCS5D01G305000 chr7D 83.594 128 17 3 2788 2913 251358893 251359018 5.720000e-22 117.0
37 TraesCS5D01G305000 chr7B 89.615 780 62 13 1 764 710464394 710465170 0.000000e+00 974.0
38 TraesCS5D01G305000 chr7B 82.812 128 18 3 2788 2913 228267660 228267785 2.660000e-20 111.0
39 TraesCS5D01G305000 chr7A 90.588 255 23 1 6839 7093 38081653 38081400 4.040000e-88 337.0
40 TraesCS5D01G305000 chr7A 83.594 128 17 3 2788 2913 270278552 270278427 5.720000e-22 117.0
41 TraesCS5D01G305000 chr3B 90.588 255 23 1 6839 7093 397325464 397325211 4.040000e-88 337.0
42 TraesCS5D01G305000 chr3B 97.297 37 1 0 4167 4203 24008710 24008746 7.560000e-06 63.9
43 TraesCS5D01G305000 chr6A 90.196 255 24 1 6839 7093 197863952 197863699 1.880000e-86 331.0
44 TraesCS5D01G305000 chr2A 90.196 255 22 2 6839 7093 381735046 381734795 6.750000e-86 329.0
45 TraesCS5D01G305000 chr4B 86.957 253 28 3 6846 7093 609106763 609106511 6.900000e-71 279.0
46 TraesCS5D01G305000 chr4B 97.436 39 1 0 4124 4162 550395836 550395798 5.850000e-07 67.6
47 TraesCS5D01G305000 chr1A 97.368 38 1 0 4167 4204 372239108 372239145 2.100000e-06 65.8
48 TraesCS5D01G305000 chr3A 100.000 34 0 0 4170 4203 20003203 20003170 7.560000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G305000 chr5D 399976552 399985572 9020 False 16659.000000 16659 100.000000 1 9021 1 chr5D.!!$F1 9020
1 TraesCS5D01G305000 chr5B 480156290 480164523 8233 False 1576.871429 3308 93.649143 768 8854 7 chr5B.!!$F1 8086
2 TraesCS5D01G305000 chr5B 480170106 480170608 502 False 282.000000 320 91.248000 8603 9021 2 chr5B.!!$F2 418
3 TraesCS5D01G305000 chr5A 505589008 505597757 8749 False 1127.030000 3101 91.013600 768 8907 10 chr5A.!!$F1 8139
4 TraesCS5D01G305000 chr1D 303307338 303308120 782 False 1147.000000 1147 93.495000 1 766 1 chr1D.!!$F2 765
5 TraesCS5D01G305000 chr3D 575861666 575862457 791 True 1116.000000 1116 92.560000 1 771 1 chr3D.!!$R4 770
6 TraesCS5D01G305000 chr3D 396431303 396432098 795 True 1088.000000 1088 91.970000 1 766 1 chr3D.!!$R3 765
7 TraesCS5D01G305000 chr3D 462457283 462458069 786 False 1083.000000 1083 91.940000 1 770 1 chr3D.!!$F5 769
8 TraesCS5D01G305000 chr3D 83388017 83388814 797 False 1075.000000 1075 91.625000 2 770 1 chr3D.!!$F3 768
9 TraesCS5D01G305000 chr3D 14814793 14815495 702 False 1011.000000 1011 92.918000 76 766 1 chr3D.!!$F1 690
10 TraesCS5D01G305000 chr3D 43736114 43736890 776 True 915.000000 915 88.280000 1 766 1 chr3D.!!$R1 765
11 TraesCS5D01G305000 chr4D 9298423 9299204 781 False 1112.000000 1112 92.602000 1 771 1 chr4D.!!$F1 770
12 TraesCS5D01G305000 chr4D 58651928 58652715 787 True 1103.000000 1103 92.395000 1 766 1 chr4D.!!$R1 765
13 TraesCS5D01G305000 chr6D 388144483 388145271 788 True 1103.000000 1103 92.415000 1 766 1 chr6D.!!$R1 765
14 TraesCS5D01G305000 chr7D 15024548 15025237 689 True 1018.000000 1018 93.534000 1 682 1 chr7D.!!$R1 681
15 TraesCS5D01G305000 chr7B 710464394 710465170 776 False 974.000000 974 89.615000 1 764 1 chr7B.!!$F2 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
696 752 1.221021 GTTTCTAGGGCGACTGGGG 59.779 63.158 0.0 0.00 0.00 4.96 F
1479 1655 0.109412 GTGACGACGGTAGGGTTCAG 60.109 60.000 0.0 0.00 0.00 3.02 F
1647 1840 0.250858 CAATCTGTGCCTGGTGGTCA 60.251 55.000 0.0 0.00 35.27 4.02 F
3006 3358 0.613777 CAAAACGGGGGCTCTAGACT 59.386 55.000 0.0 0.00 0.00 3.24 F
4417 4947 1.216678 TGGGACTGGAGAAAGCCAAAA 59.783 47.619 0.0 0.00 37.52 2.44 F
4562 5092 0.179062 GCTCTCATCCGACATGGCTT 60.179 55.000 0.0 0.00 37.80 4.35 F
6096 6748 0.317160 GCGATGGATCCCACGTGATA 59.683 55.000 19.3 4.48 35.80 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 1823 0.037303 CTTGACCACCAGGCACAGAT 59.963 55.00 0.00 0.0 39.06 2.90 R
3195 3547 1.040646 TGCTTAGTAGGCTGCGCTAT 58.959 50.00 9.73 0.0 0.00 2.97 R
3346 3698 5.825593 AGTTCCCATTTAGTTCTCTGTGA 57.174 39.13 0.00 0.0 0.00 3.58 R
4435 4965 0.465460 GCATCACGAGGCCCCATTAA 60.465 55.00 0.00 0.0 30.94 1.40 R
6172 6824 0.104356 TAACTCCCCCTGGACACCAA 60.104 55.00 0.00 0.0 35.03 3.67 R
6173 6825 0.120377 ATAACTCCCCCTGGACACCA 59.880 55.00 0.00 0.0 35.03 4.17 R
8068 9115 0.032130 TGATATCTGCGAAGACGGGC 59.968 55.00 0.00 0.0 40.15 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 131 3.405093 GACGATCCCCATGGCTGCA 62.405 63.158 6.09 0.00 0.00 4.41
146 154 3.468063 GGAGACCCGACACCTTGT 58.532 61.111 0.00 0.00 0.00 3.16
530 562 3.815507 AGGAGAAAATGGGAGGGAACTA 58.184 45.455 0.00 0.00 44.43 2.24
676 726 3.350612 CCGAGCCGGCGAAAAACA 61.351 61.111 23.20 0.00 41.17 2.83
696 752 1.221021 GTTTCTAGGGCGACTGGGG 59.779 63.158 0.00 0.00 0.00 4.96
704 760 1.967494 GGCGACTGGGGCGTTTTTA 60.967 57.895 0.00 0.00 0.00 1.52
744 800 1.847968 ACCTGGGGAGGACCTGTTG 60.848 63.158 0.00 0.00 40.03 3.33
766 822 3.869272 GCGCGGTTGGAGATGCTG 61.869 66.667 8.83 0.00 0.00 4.41
1232 1337 1.831106 TGGTATCTGCATCTTCCGTGT 59.169 47.619 0.00 0.00 0.00 4.49
1319 1424 1.512734 GTGGCTTTCTGAATGCGCG 60.513 57.895 18.36 0.00 32.77 6.86
1321 1426 2.577911 GCTTTCTGAATGCGCGGC 60.578 61.111 8.83 0.00 0.00 6.53
1375 1498 1.118356 ATTTTTGTTGCGGGGGCAGA 61.118 50.000 0.00 0.00 0.00 4.26
1395 1518 1.196012 AGCCTTCTAGGGGTTCTTCG 58.804 55.000 0.00 0.00 35.37 3.79
1396 1519 1.192428 GCCTTCTAGGGGTTCTTCGA 58.808 55.000 0.00 0.00 35.37 3.71
1398 1521 2.027469 GCCTTCTAGGGGTTCTTCGAAA 60.027 50.000 0.00 0.00 35.37 3.46
1400 1523 3.369576 CCTTCTAGGGGTTCTTCGAAAGG 60.370 52.174 0.00 0.00 0.00 3.11
1401 1524 2.185387 TCTAGGGGTTCTTCGAAAGGG 58.815 52.381 0.00 0.00 0.00 3.95
1402 1525 0.616891 TAGGGGTTCTTCGAAAGGGC 59.383 55.000 0.00 0.00 0.00 5.19
1403 1526 2.038837 GGGGTTCTTCGAAAGGGCG 61.039 63.158 0.00 0.00 0.00 6.13
1404 1527 2.687805 GGGTTCTTCGAAAGGGCGC 61.688 63.158 0.00 0.00 0.00 6.53
1405 1528 1.964373 GGTTCTTCGAAAGGGCGCA 60.964 57.895 10.83 0.00 0.00 6.09
1406 1529 1.497722 GTTCTTCGAAAGGGCGCAG 59.502 57.895 10.83 0.00 0.00 5.18
1408 1531 0.250124 TTCTTCGAAAGGGCGCAGAA 60.250 50.000 10.83 3.83 40.25 3.02
1409 1532 0.670546 TCTTCGAAAGGGCGCAGAAG 60.671 55.000 10.83 13.21 39.52 2.85
1410 1533 0.951040 CTTCGAAAGGGCGCAGAAGT 60.951 55.000 10.83 0.00 35.06 3.01
1411 1534 1.227999 TTCGAAAGGGCGCAGAAGTG 61.228 55.000 10.83 0.00 0.00 3.16
1457 1633 0.319900 AGTAGACGTTGTGGCAGCAG 60.320 55.000 0.00 0.00 0.00 4.24
1468 1644 3.406361 GCAGCAGGTGTGACGACG 61.406 66.667 0.66 0.00 0.00 5.12
1474 1650 1.975407 AGGTGTGACGACGGTAGGG 60.975 63.158 0.00 0.00 0.00 3.53
1476 1652 1.662044 GTGTGACGACGGTAGGGTT 59.338 57.895 0.00 0.00 0.00 4.11
1477 1653 0.387750 GTGTGACGACGGTAGGGTTC 60.388 60.000 0.00 0.00 0.00 3.62
1478 1654 0.822944 TGTGACGACGGTAGGGTTCA 60.823 55.000 0.00 0.00 0.00 3.18
1479 1655 0.109412 GTGACGACGGTAGGGTTCAG 60.109 60.000 0.00 0.00 0.00 3.02
1498 1674 1.070275 TCAGTGTGCTGTGCTCCTG 59.930 57.895 0.00 0.00 43.05 3.86
1502 1678 1.227943 TGTGCTGTGCTCCTGGAAC 60.228 57.895 0.00 0.00 0.00 3.62
1507 1683 3.050275 GTGCTCCTGGAACGTGGC 61.050 66.667 0.00 0.00 0.00 5.01
1508 1684 4.680237 TGCTCCTGGAACGTGGCG 62.680 66.667 0.00 0.00 0.00 5.69
1510 1686 4.003788 CTCCTGGAACGTGGCGGT 62.004 66.667 0.00 0.00 0.00 5.68
1511 1687 4.308458 TCCTGGAACGTGGCGGTG 62.308 66.667 0.00 0.00 0.00 4.94
1515 1691 2.898343 GGAACGTGGCGGTGTTGT 60.898 61.111 0.00 0.00 0.00 3.32
1516 1692 2.629763 GAACGTGGCGGTGTTGTC 59.370 61.111 0.00 0.00 0.00 3.18
1517 1693 2.888998 GAACGTGGCGGTGTTGTCC 61.889 63.158 0.00 0.00 0.00 4.02
1518 1694 3.394635 AACGTGGCGGTGTTGTCCT 62.395 57.895 0.00 0.00 0.00 3.85
1519 1695 3.345808 CGTGGCGGTGTTGTCCTG 61.346 66.667 0.00 0.00 0.00 3.86
1520 1696 3.660111 GTGGCGGTGTTGTCCTGC 61.660 66.667 0.00 0.00 0.00 4.85
1524 1700 2.590575 CGGTGTTGTCCTGCGGTT 60.591 61.111 0.00 0.00 0.00 4.44
1525 1701 2.184167 CGGTGTTGTCCTGCGGTTT 61.184 57.895 0.00 0.00 0.00 3.27
1526 1702 1.652563 GGTGTTGTCCTGCGGTTTC 59.347 57.895 0.00 0.00 0.00 2.78
1527 1703 0.818040 GGTGTTGTCCTGCGGTTTCT 60.818 55.000 0.00 0.00 0.00 2.52
1528 1704 0.586802 GTGTTGTCCTGCGGTTTCTC 59.413 55.000 0.00 0.00 0.00 2.87
1561 1737 9.486497 GATGAATTCTCTTGTGCTGAATAGATA 57.514 33.333 7.05 0.00 31.16 1.98
1563 1739 9.842775 TGAATTCTCTTGTGCTGAATAGATATT 57.157 29.630 7.05 0.00 31.16 1.28
1565 1741 8.618702 ATTCTCTTGTGCTGAATAGATATTGG 57.381 34.615 0.00 0.00 0.00 3.16
1566 1742 5.994054 TCTCTTGTGCTGAATAGATATTGGC 59.006 40.000 0.00 0.00 0.00 4.52
1571 1757 6.101997 TGTGCTGAATAGATATTGGCGATAG 58.898 40.000 0.24 0.00 0.00 2.08
1579 1772 4.926244 AGATATTGGCGATAGATACTGCG 58.074 43.478 0.24 0.00 39.76 5.18
1588 1781 4.287720 CGATAGATACTGCGCAACTGTTA 58.712 43.478 13.05 2.10 39.76 2.41
1589 1782 4.917998 CGATAGATACTGCGCAACTGTTAT 59.082 41.667 13.05 7.31 39.76 1.89
1600 1793 7.041644 ACTGCGCAACTGTTATAGTTCTTTTAA 60.042 33.333 13.05 0.00 46.55 1.52
1604 1797 8.287503 CGCAACTGTTATAGTTCTTTTAAACCT 58.712 33.333 0.00 0.00 46.55 3.50
1621 1814 9.454859 TTTTAAACCTCATTTTGTTGGAATTGT 57.545 25.926 0.00 0.00 0.00 2.71
1625 1818 5.058490 CCTCATTTTGTTGGAATTGTTGCT 58.942 37.500 0.00 0.00 0.00 3.91
1630 1823 3.257469 TGTTGGAATTGTTGCTTGCAA 57.743 38.095 3.70 3.70 32.46 4.08
1631 1824 3.806380 TGTTGGAATTGTTGCTTGCAAT 58.194 36.364 11.32 0.00 36.53 3.56
1647 1840 0.250858 CAATCTGTGCCTGGTGGTCA 60.251 55.000 0.00 0.00 35.27 4.02
1659 1852 1.308998 GGTGGTCAAGTGTTGTCAGG 58.691 55.000 0.00 0.00 0.00 3.86
1662 1855 1.172812 GGTCAAGTGTTGTCAGGGCC 61.173 60.000 0.00 0.00 0.00 5.80
1703 1896 4.508124 GTCTGTATAGGTCTCGCCATTTTG 59.492 45.833 0.00 0.00 40.61 2.44
1706 1899 0.988832 TAGGTCTCGCCATTTTGGGT 59.011 50.000 0.00 0.00 38.19 4.51
1713 1906 2.549754 CTCGCCATTTTGGGTATGCTAG 59.450 50.000 0.00 0.00 38.19 3.42
1729 1922 3.857052 TGCTAGTTGTTAAGCATAGCGT 58.143 40.909 0.00 0.00 43.56 5.07
1730 1923 3.616821 TGCTAGTTGTTAAGCATAGCGTG 59.383 43.478 0.00 0.00 43.56 5.34
1732 1925 4.259850 GCTAGTTGTTAAGCATAGCGTGTC 60.260 45.833 0.00 0.00 38.63 3.67
1733 1926 3.659786 AGTTGTTAAGCATAGCGTGTCA 58.340 40.909 0.00 0.00 0.00 3.58
1734 1927 3.679980 AGTTGTTAAGCATAGCGTGTCAG 59.320 43.478 0.00 0.00 0.00 3.51
1769 1982 1.276989 CCTGCCAAAATTGCCATCACT 59.723 47.619 0.00 0.00 0.00 3.41
1770 1983 2.496871 CCTGCCAAAATTGCCATCACTA 59.503 45.455 0.00 0.00 0.00 2.74
1772 1985 4.341806 CCTGCCAAAATTGCCATCACTATA 59.658 41.667 0.00 0.00 0.00 1.31
1774 1987 5.845103 TGCCAAAATTGCCATCACTATATG 58.155 37.500 0.00 0.00 0.00 1.78
1775 1988 5.363292 TGCCAAAATTGCCATCACTATATGT 59.637 36.000 0.00 0.00 0.00 2.29
1778 1991 6.919662 CCAAAATTGCCATCACTATATGTGTC 59.080 38.462 0.00 0.00 46.27 3.67
1780 1993 5.573380 ATTGCCATCACTATATGTGTCCT 57.427 39.130 0.00 0.00 46.27 3.85
1781 1994 6.686484 ATTGCCATCACTATATGTGTCCTA 57.314 37.500 0.00 0.00 46.27 2.94
1782 1995 6.686484 TTGCCATCACTATATGTGTCCTAT 57.314 37.500 0.00 0.00 46.27 2.57
1783 1996 7.790782 TTGCCATCACTATATGTGTCCTATA 57.209 36.000 0.00 0.00 46.27 1.31
1784 1997 7.978099 TGCCATCACTATATGTGTCCTATAT 57.022 36.000 0.00 0.00 46.27 0.86
1824 2037 8.644374 TTACCAATTTACAGTGGAGCTTAAAT 57.356 30.769 1.69 0.00 40.98 1.40
1827 2040 9.084533 ACCAATTTACAGTGGAGCTTAAATAAA 57.915 29.630 1.69 0.00 40.98 1.40
1834 2047 8.738645 ACAGTGGAGCTTAAATAAATAAGGAG 57.261 34.615 0.00 0.00 34.20 3.69
1835 2048 8.329502 ACAGTGGAGCTTAAATAAATAAGGAGT 58.670 33.333 0.00 0.00 34.20 3.85
1836 2049 9.832445 CAGTGGAGCTTAAATAAATAAGGAGTA 57.168 33.333 0.00 0.00 34.20 2.59
1837 2050 9.833917 AGTGGAGCTTAAATAAATAAGGAGTAC 57.166 33.333 0.00 0.00 34.20 2.73
1838 2051 9.833917 GTGGAGCTTAAATAAATAAGGAGTACT 57.166 33.333 0.00 0.00 34.20 2.73
1873 2086 8.202745 ACTAACATAGTCATAGCTTCTTTTGC 57.797 34.615 0.00 0.00 32.47 3.68
1874 2087 8.043710 ACTAACATAGTCATAGCTTCTTTTGCT 58.956 33.333 0.00 0.00 38.35 3.91
1875 2088 7.693969 AACATAGTCATAGCTTCTTTTGCTT 57.306 32.000 0.00 0.00 41.46 3.91
1876 2089 7.313951 ACATAGTCATAGCTTCTTTTGCTTC 57.686 36.000 0.00 0.00 41.46 3.86
1877 2090 6.881065 ACATAGTCATAGCTTCTTTTGCTTCA 59.119 34.615 0.00 0.00 41.46 3.02
1878 2091 5.619625 AGTCATAGCTTCTTTTGCTTCAC 57.380 39.130 0.00 0.00 41.46 3.18
1879 2092 5.312079 AGTCATAGCTTCTTTTGCTTCACT 58.688 37.500 0.00 0.00 41.46 3.41
1880 2093 5.767168 AGTCATAGCTTCTTTTGCTTCACTT 59.233 36.000 0.00 0.00 41.46 3.16
1881 2094 5.855395 GTCATAGCTTCTTTTGCTTCACTTG 59.145 40.000 0.00 0.00 41.46 3.16
1882 2095 5.764686 TCATAGCTTCTTTTGCTTCACTTGA 59.235 36.000 0.00 0.00 41.46 3.02
1883 2096 6.432162 TCATAGCTTCTTTTGCTTCACTTGAT 59.568 34.615 0.00 0.00 41.46 2.57
1884 2097 4.868067 AGCTTCTTTTGCTTCACTTGATG 58.132 39.130 0.00 0.00 37.52 3.07
1885 2098 4.340381 AGCTTCTTTTGCTTCACTTGATGT 59.660 37.500 0.00 0.00 37.52 3.06
1886 2099 5.045872 GCTTCTTTTGCTTCACTTGATGTT 58.954 37.500 0.00 0.00 0.00 2.71
1887 2100 5.521372 GCTTCTTTTGCTTCACTTGATGTTT 59.479 36.000 0.00 0.00 0.00 2.83
1888 2101 6.509039 GCTTCTTTTGCTTCACTTGATGTTTG 60.509 38.462 0.00 0.00 0.00 2.93
1889 2102 5.964758 TCTTTTGCTTCACTTGATGTTTGT 58.035 33.333 0.00 0.00 0.00 2.83
1890 2103 7.094508 TCTTTTGCTTCACTTGATGTTTGTA 57.905 32.000 0.00 0.00 0.00 2.41
1891 2104 7.542890 TCTTTTGCTTCACTTGATGTTTGTAA 58.457 30.769 0.00 0.00 0.00 2.41
1892 2105 8.031864 TCTTTTGCTTCACTTGATGTTTGTAAA 58.968 29.630 0.00 0.00 0.00 2.01
1893 2106 8.715191 TTTTGCTTCACTTGATGTTTGTAAAT 57.285 26.923 0.00 0.00 0.00 1.40
1894 2107 7.697352 TTGCTTCACTTGATGTTTGTAAATG 57.303 32.000 0.00 0.00 0.00 2.32
1895 2108 7.036996 TGCTTCACTTGATGTTTGTAAATGA 57.963 32.000 0.00 0.00 0.00 2.57
1896 2109 6.917477 TGCTTCACTTGATGTTTGTAAATGAC 59.083 34.615 0.00 0.00 0.00 3.06
1897 2110 6.917477 GCTTCACTTGATGTTTGTAAATGACA 59.083 34.615 0.00 0.00 35.78 3.58
1898 2111 7.434897 GCTTCACTTGATGTTTGTAAATGACAA 59.565 33.333 0.00 0.00 46.56 3.18
1910 2123 1.753930 AATGACAATGCCAGATCGCA 58.246 45.000 0.00 0.00 44.35 5.10
1947 2160 2.884639 GCTAGGTTTTCAGGTTCTGCAA 59.115 45.455 0.00 0.00 0.00 4.08
1950 2163 1.408702 GGTTTTCAGGTTCTGCAAGCA 59.591 47.619 0.00 0.00 31.93 3.91
1952 2165 0.670162 TTTCAGGTTCTGCAAGCAGC 59.330 50.000 16.89 4.30 43.31 5.25
1969 2182 5.725110 AGCAGCGTTATTGTCAAGATTAG 57.275 39.130 0.00 0.00 0.00 1.73
1971 2184 5.292101 AGCAGCGTTATTGTCAAGATTAGTC 59.708 40.000 0.00 0.00 0.00 2.59
1974 2187 4.873827 GCGTTATTGTCAAGATTAGTCCCA 59.126 41.667 0.00 0.00 0.00 4.37
1975 2188 5.006746 GCGTTATTGTCAAGATTAGTCCCAG 59.993 44.000 0.00 0.00 0.00 4.45
1976 2189 6.338146 CGTTATTGTCAAGATTAGTCCCAGA 58.662 40.000 0.00 0.00 0.00 3.86
1977 2190 6.255887 CGTTATTGTCAAGATTAGTCCCAGAC 59.744 42.308 0.00 0.00 0.00 3.51
1978 2191 7.331791 GTTATTGTCAAGATTAGTCCCAGACT 58.668 38.462 2.38 2.38 45.54 3.24
1979 2192 8.475639 GTTATTGTCAAGATTAGTCCCAGACTA 58.524 37.037 0.32 0.32 41.51 2.59
2036 2251 0.986527 ACCTGTGGATGTGCAGATCA 59.013 50.000 23.75 8.71 34.87 2.92
2046 2261 3.457099 TGCAGATCAATAGCACGCA 57.543 47.368 0.00 0.00 32.55 5.24
2180 2395 8.742554 TTTTCTTTTCTGTTCTGTTGTCTTTC 57.257 30.769 0.00 0.00 0.00 2.62
2199 2414 7.766278 TGTCTTTCCATCTTATAGCTCTGAAAC 59.234 37.037 0.00 0.00 0.00 2.78
2228 2443 5.360714 TCAAAGAGCTTGTGTTCCTTTTCAT 59.639 36.000 0.00 0.00 36.34 2.57
2244 2459 6.368791 TCCTTTTCATCACAAACAGAGATACG 59.631 38.462 0.00 0.00 0.00 3.06
2245 2460 5.530519 TTTCATCACAAACAGAGATACGC 57.469 39.130 0.00 0.00 0.00 4.42
2489 2705 4.826733 ACATTCTGTTGCAATGTACCTGAA 59.173 37.500 0.59 5.63 41.68 3.02
2549 2901 7.443575 AGTTTCAGTGGACATGCATATAAGATC 59.556 37.037 0.00 0.00 0.00 2.75
2605 2957 5.869579 TGTGAGCTGAAAAGGTAGATTCTT 58.130 37.500 0.00 0.00 0.00 2.52
2772 3124 9.778741 GGTATCATATCTGGTTAAATCAGTGAA 57.221 33.333 0.00 0.00 34.15 3.18
2872 3224 0.954449 CTGAGCTCTGCTGGTTGTGG 60.954 60.000 16.19 0.00 39.88 4.17
3006 3358 0.613777 CAAAACGGGGGCTCTAGACT 59.386 55.000 0.00 0.00 0.00 3.24
3017 3369 5.514310 GGGGGCTCTAGACTTGTAAGAAAAA 60.514 44.000 0.00 0.00 0.00 1.94
3062 3414 6.877322 AGAGTATGCCGTTGTAAGTTTGTAAT 59.123 34.615 0.00 0.00 0.00 1.89
3151 3503 8.597167 TCTCTGTTAGGAAAAATCTCAAGATCA 58.403 33.333 0.00 0.00 32.75 2.92
3178 3530 7.593644 CGAATATCCATACTGATGTCGTGTTTA 59.406 37.037 0.00 0.00 32.97 2.01
3294 3646 7.305590 GCAATTGTGAAATTGTGACATATAGCG 60.306 37.037 7.40 0.00 41.09 4.26
3378 3731 9.533831 AGAACTAAATGGGAACTATTGAATTGT 57.466 29.630 0.00 0.00 0.00 2.71
3398 3751 8.884124 AATTGTCAAATCCTTCTCCTTATTCA 57.116 30.769 0.00 0.00 0.00 2.57
3570 3924 6.620877 TTGGCTAAAGATGAGGAGAAAGTA 57.379 37.500 0.00 0.00 0.00 2.24
3659 4013 5.008712 GCCTAGCACTTTTCTTGTTTGTAGT 59.991 40.000 0.00 0.00 0.00 2.73
3905 4259 3.877559 TCTCTTGCCATATCTGGTTGTG 58.122 45.455 0.00 0.00 45.10 3.33
4056 4410 5.765182 AGAATCTGAGAACGTGAATTGGTTT 59.235 36.000 0.00 0.00 0.00 3.27
4115 4469 7.499321 TTTCAGTTCTTTGTTTATAAGGCGA 57.501 32.000 0.00 0.00 0.00 5.54
4233 4755 7.450634 CCTGCTAGTCCAGTATGTATAGGTTTA 59.549 40.741 0.00 0.00 0.00 2.01
4315 4845 3.324846 AGTTCAACATGGTGTGCTCTAGA 59.675 43.478 11.27 0.00 0.00 2.43
4376 4906 1.739371 GCAAGGACCGAAGCGACTATT 60.739 52.381 0.00 0.00 0.00 1.73
4401 4931 6.136635 CGAACATCGTTACCAAACTATGGGA 61.137 44.000 7.43 0.00 43.71 4.37
4417 4947 1.216678 TGGGACTGGAGAAAGCCAAAA 59.783 47.619 0.00 0.00 37.52 2.44
4435 4965 1.302907 AACAGGGGATGCTCTGGATT 58.697 50.000 19.28 1.29 35.47 3.01
4562 5092 0.179062 GCTCTCATCCGACATGGCTT 60.179 55.000 0.00 0.00 37.80 4.35
4608 5138 6.827727 TGTCAAAGGCCTTCTATTATAGTCC 58.172 40.000 20.79 0.00 0.00 3.85
4615 5145 6.615726 AGGCCTTCTATTATAGTCCTTGTCAA 59.384 38.462 0.00 0.00 0.00 3.18
4673 5203 8.094548 TGACTAGAACATGCAGTTTTGTAGTAT 58.905 33.333 12.02 0.00 41.51 2.12
4814 5344 1.801771 TGTCCTAAATGCAAACGACCG 59.198 47.619 0.00 0.00 0.00 4.79
4850 5380 1.401552 GGTTGCATGCATATGACGTGT 59.598 47.619 23.37 0.00 36.36 4.49
5035 5567 0.903454 ACGGAAGTAGGACCACTGGG 60.903 60.000 0.00 0.00 46.88 4.45
5092 5624 7.398024 ACAAGAAGAAAGGCATAGTATGTTCT 58.602 34.615 11.73 9.69 0.00 3.01
5120 5652 5.233083 TGGGCATTATCCTTCTCTGTATG 57.767 43.478 0.00 0.00 0.00 2.39
5121 5653 4.907269 TGGGCATTATCCTTCTCTGTATGA 59.093 41.667 0.00 0.00 0.00 2.15
5195 5727 1.945394 CAGATAATGCAAAGCGAGCCT 59.055 47.619 0.00 0.00 0.00 4.58
5196 5728 2.357009 CAGATAATGCAAAGCGAGCCTT 59.643 45.455 0.00 0.00 34.51 4.35
5398 5933 8.474025 CACAATTTTTCACTATTATAGGGCCAA 58.526 33.333 6.18 0.00 0.00 4.52
5481 6016 6.270064 TGTAGATCACACCAATATGTACACG 58.730 40.000 0.00 0.00 30.04 4.49
5583 6120 1.045407 TGACCGTTCTTGCTACTGGT 58.955 50.000 0.00 0.00 0.00 4.00
5592 6129 5.420409 GTTCTTGCTACTGGTATGCTACTT 58.580 41.667 0.00 0.00 0.00 2.24
5634 6171 0.523072 ATTTACTGCTGCCAACTGCG 59.477 50.000 0.00 0.00 45.60 5.18
5636 6173 1.227999 TTACTGCTGCCAACTGCGAC 61.228 55.000 0.00 0.00 45.60 5.19
5661 6198 8.410912 ACTTGTTGTTACTTTCCCTGTTTATTC 58.589 33.333 0.00 0.00 0.00 1.75
5696 6233 9.561270 GTTCTTTTCTTTTAGTATGATGAAGCC 57.439 33.333 0.00 0.00 0.00 4.35
5813 6350 3.376859 CCTGTTGCAGCCGTTTCATTATA 59.623 43.478 0.00 0.00 0.00 0.98
5845 6382 7.245292 TCTGAATTTTCCCTATTTTTCCCAGA 58.755 34.615 0.00 0.00 0.00 3.86
5847 6384 8.448068 TGAATTTTCCCTATTTTTCCCAGAAT 57.552 30.769 0.00 0.00 0.00 2.40
5959 6611 4.235360 CACTACGAAACCACCTAGAACAG 58.765 47.826 0.00 0.00 0.00 3.16
5963 6615 3.387050 ACGAAACCACCTAGAACAGAACT 59.613 43.478 0.00 0.00 0.00 3.01
6021 6673 3.267031 ACCCTCTCCACTCTTATTTTGGG 59.733 47.826 0.00 0.00 37.08 4.12
6067 6719 5.762218 GGGATCCTCATTGTTAACTGATGAG 59.238 44.000 27.70 27.70 43.95 2.90
6073 6725 4.943705 TCATTGTTAACTGATGAGGCCTTC 59.056 41.667 6.77 0.93 0.00 3.46
6076 6728 3.190874 GTTAACTGATGAGGCCTTCTCG 58.809 50.000 6.77 6.30 45.32 4.04
6096 6748 0.317160 GCGATGGATCCCACGTGATA 59.683 55.000 19.30 4.48 35.80 2.15
6166 6818 8.980143 TGCACTAACTAATTAAAAATTCAGCC 57.020 30.769 0.00 0.00 0.00 4.85
6167 6819 8.802267 TGCACTAACTAATTAAAAATTCAGCCT 58.198 29.630 0.00 0.00 0.00 4.58
6168 6820 9.290483 GCACTAACTAATTAAAAATTCAGCCTC 57.710 33.333 0.00 0.00 0.00 4.70
6169 6821 9.788960 CACTAACTAATTAAAAATTCAGCCTCC 57.211 33.333 0.00 0.00 0.00 4.30
6172 6824 5.949952 ACTAATTAAAAATTCAGCCTCCGGT 59.050 36.000 0.00 0.00 0.00 5.28
6173 6825 5.738619 AATTAAAAATTCAGCCTCCGGTT 57.261 34.783 0.00 0.00 0.00 4.44
6175 6827 1.256812 AAAATTCAGCCTCCGGTTGG 58.743 50.000 0.00 6.62 34.63 3.77
6176 6828 0.112412 AAATTCAGCCTCCGGTTGGT 59.888 50.000 15.48 5.19 34.63 3.67
6178 6830 1.779061 ATTCAGCCTCCGGTTGGTGT 61.779 55.000 19.40 6.34 34.63 4.16
6179 6831 2.358737 CAGCCTCCGGTTGGTGTC 60.359 66.667 15.48 2.34 36.30 3.67
6180 6832 3.637273 AGCCTCCGGTTGGTGTCC 61.637 66.667 15.48 2.04 36.30 4.02
6181 6833 3.948719 GCCTCCGGTTGGTGTCCA 61.949 66.667 15.48 0.00 36.30 4.02
6185 6837 4.344865 CCGGTTGGTGTCCAGGGG 62.345 72.222 0.00 0.00 33.81 4.79
6187 6839 2.856988 GGTTGGTGTCCAGGGGGA 60.857 66.667 0.00 0.00 42.29 4.81
6199 6866 6.238648 GTGTCCAGGGGGAGTTATTATTATG 58.761 44.000 0.00 0.00 46.12 1.90
6224 7255 1.665679 CAAGTGCATGTATGTCCGGTC 59.334 52.381 0.00 0.00 0.00 4.79
6375 7406 8.004801 TGTAAGTACCAGATCCATCTCTTATGA 58.995 37.037 0.00 0.00 34.22 2.15
6554 7587 0.323360 TGATGCCTTGGGTGCTTACC 60.323 55.000 0.00 0.00 0.00 2.85
6613 7646 4.500375 GCACAAGGAGATCTGCAAAAGTTT 60.500 41.667 17.24 0.00 0.00 2.66
6673 7706 6.462067 GGCATCCATCCTTCCTCTTAAAAATG 60.462 42.308 0.00 0.00 0.00 2.32
6812 7845 6.076981 TCCTGCATTTCAAGTCTTCTTTTC 57.923 37.500 0.00 0.00 0.00 2.29
6819 7854 7.682981 GCATTTCAAGTCTTCTTTTCTTCCACT 60.683 37.037 0.00 0.00 0.00 4.00
7290 8332 2.158667 TGGTGAAACTGAACCTCTTCCC 60.159 50.000 0.00 0.00 37.36 3.97
7417 8461 4.955925 TTTGTGTGTGTGACCAAGTTAG 57.044 40.909 0.00 0.00 0.00 2.34
7536 8581 7.887996 TTGAACTTTATGGTGATGATTTTGC 57.112 32.000 0.00 0.00 0.00 3.68
7555 8600 1.470979 GCACCTTTCCGAGCGAAGATA 60.471 52.381 0.00 0.00 0.00 1.98
7623 8668 5.079643 AGCATTTTGAGTGGATGTTAGGTT 58.920 37.500 0.00 0.00 0.00 3.50
7628 8673 6.509418 TTTGAGTGGATGTTAGGTTAATGC 57.491 37.500 0.00 0.00 0.00 3.56
7645 8690 6.071728 GGTTAATGCTGCTGCTCCATTTATAT 60.072 38.462 17.00 0.00 40.48 0.86
7653 8698 4.761739 GCTGCTCCATTTATATACCTTGCA 59.238 41.667 0.00 0.00 0.00 4.08
7657 8702 5.997746 GCTCCATTTATATACCTTGCACTCA 59.002 40.000 0.00 0.00 0.00 3.41
7714 8759 3.120060 AGTTGTACCGACATCTCGTGTAC 60.120 47.826 12.06 12.06 42.36 2.90
7728 8775 0.241213 GTGTACGCTCTGTGCTCTCA 59.759 55.000 0.00 0.00 40.11 3.27
7791 8838 4.786507 TCGTATCGGTGAATATGGTAACG 58.213 43.478 0.00 0.00 42.51 3.18
7885 8932 1.972872 ACCTTGTTCAAGCACTGGAG 58.027 50.000 7.00 0.00 0.00 3.86
7924 8971 4.382320 GTTACGGGCGGCCAGTCA 62.382 66.667 27.79 15.17 33.35 3.41
8029 9076 7.500559 AGAATAACCATCTCTTAACATTCAGGC 59.499 37.037 0.00 0.00 0.00 4.85
8068 9115 2.434185 TGCTGCGCCTTTAGTCGG 60.434 61.111 4.18 0.00 0.00 4.79
8101 9149 3.168292 AGATATCATCTGCGATGGTCCA 58.832 45.455 15.33 0.00 38.44 4.02
8109 9157 2.822399 CGATGGTCCAGGGGTAGC 59.178 66.667 0.00 0.00 0.00 3.58
8110 9158 2.822399 GATGGTCCAGGGGTAGCG 59.178 66.667 0.00 0.00 0.00 4.26
8111 9159 3.462199 GATGGTCCAGGGGTAGCGC 62.462 68.421 0.00 0.00 0.00 5.92
8131 9179 1.893801 CGGTAGGCAGTTAGGGATAGG 59.106 57.143 0.00 0.00 0.00 2.57
8132 9180 2.258109 GGTAGGCAGTTAGGGATAGGG 58.742 57.143 0.00 0.00 0.00 3.53
8178 9227 5.152623 TGGCCAGAATATGTATAGTGAGC 57.847 43.478 0.00 0.00 0.00 4.26
8179 9228 4.177026 GGCCAGAATATGTATAGTGAGCG 58.823 47.826 0.00 0.00 0.00 5.03
8338 9389 5.935206 TGAACAGTATTGCTATGGTTTTCGA 59.065 36.000 0.00 0.00 0.00 3.71
8342 9393 3.609103 ATTGCTATGGTTTTCGATCGC 57.391 42.857 11.09 0.00 0.00 4.58
8398 9450 2.538037 GTGAATTTGGCGTGACAAAACC 59.462 45.455 4.77 1.08 42.91 3.27
8402 9454 0.965866 TTGGCGTGACAAAACCCACA 60.966 50.000 0.00 0.00 33.13 4.17
8418 9470 5.675684 ACCCACAGTTTTGAAAATCTGTT 57.324 34.783 17.19 6.67 42.97 3.16
8419 9471 6.048732 ACCCACAGTTTTGAAAATCTGTTT 57.951 33.333 17.19 7.54 42.97 2.83
8420 9472 6.472016 ACCCACAGTTTTGAAAATCTGTTTT 58.528 32.000 17.19 7.30 42.97 2.43
8421 9473 7.616313 ACCCACAGTTTTGAAAATCTGTTTTA 58.384 30.769 17.19 0.00 42.97 1.52
8422 9474 7.763985 ACCCACAGTTTTGAAAATCTGTTTTAG 59.236 33.333 17.19 10.05 42.97 1.85
8423 9475 7.254421 CCCACAGTTTTGAAAATCTGTTTTAGC 60.254 37.037 17.19 0.00 42.97 3.09
8424 9476 7.277539 CCACAGTTTTGAAAATCTGTTTTAGCA 59.722 33.333 17.19 0.00 42.97 3.49
8425 9477 8.323140 CACAGTTTTGAAAATCTGTTTTAGCAG 58.677 33.333 17.19 6.66 42.97 4.24
8493 9692 6.218019 ACATTGGACATGTGAAATTTGAGTG 58.782 36.000 1.15 0.00 0.00 3.51
8518 9718 1.667724 CCCGTGAAGCAAGATCATGAC 59.332 52.381 1.25 0.00 36.17 3.06
8520 9720 2.350804 CCGTGAAGCAAGATCATGACTG 59.649 50.000 1.25 0.00 36.17 3.51
8531 9732 6.586344 CAAGATCATGACTGTAGTACCCAAT 58.414 40.000 0.00 0.00 0.00 3.16
8549 9750 7.252612 ACCCAATATATATGATCGTGGTGAA 57.747 36.000 8.80 0.00 0.00 3.18
8586 9788 0.457851 TGTGCGTTGGGGTTGAAAAG 59.542 50.000 0.00 0.00 0.00 2.27
8589 9791 1.677052 TGCGTTGGGGTTGAAAAGTAC 59.323 47.619 0.00 0.00 0.00 2.73
8590 9792 1.001048 GCGTTGGGGTTGAAAAGTACC 60.001 52.381 0.00 0.00 0.00 3.34
8593 9795 3.475575 GTTGGGGTTGAAAAGTACCGTA 58.524 45.455 0.00 0.00 0.00 4.02
8600 9802 5.220719 GGGTTGAAAAGTACCGTATGTATGC 60.221 44.000 0.00 0.00 0.00 3.14
8603 9805 7.414762 GGTTGAAAAGTACCGTATGTATGCAAT 60.415 37.037 0.00 0.00 0.00 3.56
8665 9867 2.030562 AGTCGGTTCTTGCGTGGG 59.969 61.111 0.00 0.00 0.00 4.61
8675 9877 2.826777 CTTGCGTGGGGGAGAGCAAT 62.827 60.000 2.13 0.00 46.57 3.56
8947 10265 7.339466 AGTTGTTTATCAGTTCAACCAAGACTT 59.661 33.333 0.00 0.00 40.34 3.01
8948 10266 7.026631 TGTTTATCAGTTCAACCAAGACTTG 57.973 36.000 8.31 8.31 0.00 3.16
8949 10267 5.689383 TTATCAGTTCAACCAAGACTTGC 57.311 39.130 9.85 0.00 0.00 4.01
8950 10268 3.281727 TCAGTTCAACCAAGACTTGCT 57.718 42.857 9.85 0.00 0.00 3.91
8951 10269 3.620488 TCAGTTCAACCAAGACTTGCTT 58.380 40.909 9.85 0.00 37.29 3.91
8952 10270 4.776349 TCAGTTCAACCAAGACTTGCTTA 58.224 39.130 9.85 0.00 34.31 3.09
8994 10312 1.279271 TCTTCTCCTTGGCCAACTAGC 59.721 52.381 16.05 0.00 0.00 3.42
8995 10313 1.280421 CTTCTCCTTGGCCAACTAGCT 59.720 52.381 16.05 0.00 0.00 3.32
8996 10314 2.247699 TCTCCTTGGCCAACTAGCTA 57.752 50.000 16.05 0.00 0.00 3.32
8997 10315 2.111384 TCTCCTTGGCCAACTAGCTAG 58.889 52.381 16.05 19.44 0.00 3.42
9004 10322 1.336980 GGCCAACTAGCTAGTATCGGC 60.337 57.143 33.55 33.55 34.99 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 114 3.410628 TGCAGCCATGGGGATCGT 61.411 61.111 15.13 0.00 35.59 3.73
161 169 2.812178 GGCAACCACGCGTCGTAT 60.812 61.111 9.86 0.00 38.32 3.06
318 350 2.089980 GAGGGTAGAAGTACAGCGACA 58.910 52.381 0.00 0.00 0.00 4.35
437 469 0.518636 CGAAGAAGTACGTCGTCCCA 59.481 55.000 16.33 0.00 43.28 4.37
530 562 0.251209 GTTTCTCCCCGCTTTTCCCT 60.251 55.000 0.00 0.00 0.00 4.20
676 726 1.265454 CCCAGTCGCCCTAGAAACCT 61.265 60.000 0.00 0.00 0.00 3.50
766 822 0.651031 GAGCAATTCGAGGCGGTAAC 59.349 55.000 0.00 0.00 34.54 2.50
852 908 1.062525 CGCCATAAAGAAGCGGTGC 59.937 57.895 0.00 0.00 45.88 5.01
1212 1307 1.831106 ACACGGAAGATGCAGATACCA 59.169 47.619 0.00 0.00 0.00 3.25
1215 1310 1.473257 GCCACACGGAAGATGCAGATA 60.473 52.381 0.00 0.00 0.00 1.98
1271 1376 0.810031 CCCCGAGATTACACGCAAGG 60.810 60.000 0.00 0.00 46.39 3.61
1274 1379 2.897207 CCCCCGAGATTACACGCA 59.103 61.111 0.00 0.00 0.00 5.24
1341 1446 0.617935 AAAATCCCGCCCCAAATTGG 59.382 50.000 4.74 4.74 37.25 3.16
1342 1447 2.083002 CAAAAATCCCGCCCCAAATTG 58.917 47.619 0.00 0.00 0.00 2.32
1343 1448 1.702401 ACAAAAATCCCGCCCCAAATT 59.298 42.857 0.00 0.00 0.00 1.82
1344 1449 1.357137 ACAAAAATCCCGCCCCAAAT 58.643 45.000 0.00 0.00 0.00 2.32
1375 1498 1.555533 CGAAGAACCCCTAGAAGGCTT 59.444 52.381 0.00 0.00 32.73 4.35
1384 1507 1.379146 GCCCTTTCGAAGAACCCCT 59.621 57.895 0.00 0.00 45.90 4.79
1393 1516 1.667830 CACTTCTGCGCCCTTTCGA 60.668 57.895 4.18 0.00 0.00 3.71
1395 1518 2.335712 CCCACTTCTGCGCCCTTTC 61.336 63.158 4.18 0.00 0.00 2.62
1396 1519 2.282462 CCCACTTCTGCGCCCTTT 60.282 61.111 4.18 0.00 0.00 3.11
1403 1526 3.741476 CAAGCGCCCCACTTCTGC 61.741 66.667 2.29 0.00 0.00 4.26
1404 1527 3.741476 GCAAGCGCCCCACTTCTG 61.741 66.667 2.29 0.00 0.00 3.02
1405 1528 3.909086 GAGCAAGCGCCCCACTTCT 62.909 63.158 2.29 0.00 39.83 2.85
1406 1529 3.435186 GAGCAAGCGCCCCACTTC 61.435 66.667 2.29 0.00 39.83 3.01
1408 1531 4.711949 CAGAGCAAGCGCCCCACT 62.712 66.667 2.29 0.00 39.83 4.00
1457 1633 1.809567 AACCCTACCGTCGTCACACC 61.810 60.000 0.00 0.00 0.00 4.16
1468 1644 1.608283 GCACACTGACTGAACCCTACC 60.608 57.143 0.00 0.00 0.00 3.18
1498 1674 2.888998 GACAACACCGCCACGTTCC 61.889 63.158 0.00 0.00 0.00 3.62
1502 1678 3.345808 CAGGACAACACCGCCACG 61.346 66.667 0.00 0.00 34.73 4.94
1515 1691 0.541998 TCTCAGGAGAAACCGCAGGA 60.542 55.000 0.00 0.00 42.88 3.86
1516 1692 1.975327 TCTCAGGAGAAACCGCAGG 59.025 57.895 0.00 0.00 44.95 4.85
1517 1693 0.891373 TCTCTCAGGAGAAACCGCAG 59.109 55.000 0.08 0.00 44.62 5.18
1518 1694 3.051617 TCTCTCAGGAGAAACCGCA 57.948 52.632 0.08 0.00 44.62 5.69
1545 1721 4.751600 TCGCCAATATCTATTCAGCACAAG 59.248 41.667 0.00 0.00 0.00 3.16
1546 1722 4.702831 TCGCCAATATCTATTCAGCACAA 58.297 39.130 0.00 0.00 0.00 3.33
1551 1727 9.676195 CAGTATCTATCGCCAATATCTATTCAG 57.324 37.037 0.00 0.00 0.00 3.02
1561 1737 1.000843 TGCGCAGTATCTATCGCCAAT 59.999 47.619 5.66 0.00 46.14 3.16
1563 1739 0.387565 TTGCGCAGTATCTATCGCCA 59.612 50.000 11.31 0.00 46.14 5.69
1564 1740 0.784778 GTTGCGCAGTATCTATCGCC 59.215 55.000 11.31 0.00 46.14 5.54
1565 1741 1.453524 CAGTTGCGCAGTATCTATCGC 59.546 52.381 11.31 0.00 46.78 4.58
1566 1742 2.732366 ACAGTTGCGCAGTATCTATCG 58.268 47.619 11.31 0.00 0.00 2.92
1571 1757 5.968387 AACTATAACAGTTGCGCAGTATC 57.032 39.130 11.31 2.92 46.01 2.24
1589 1782 9.810545 CCAACAAAATGAGGTTTAAAAGAACTA 57.189 29.630 0.00 0.00 0.00 2.24
1600 1793 5.296531 GCAACAATTCCAACAAAATGAGGTT 59.703 36.000 0.00 0.00 0.00 3.50
1604 1797 5.220815 GCAAGCAACAATTCCAACAAAATGA 60.221 36.000 0.00 0.00 0.00 2.57
1610 1803 2.975732 TGCAAGCAACAATTCCAACA 57.024 40.000 0.00 0.00 0.00 3.33
1630 1823 0.037303 CTTGACCACCAGGCACAGAT 59.963 55.000 0.00 0.00 39.06 2.90
1631 1824 1.344953 ACTTGACCACCAGGCACAGA 61.345 55.000 0.00 0.00 39.06 3.41
1638 1831 1.942657 CTGACAACACTTGACCACCAG 59.057 52.381 0.00 0.00 0.00 4.00
1639 1832 1.408127 CCTGACAACACTTGACCACCA 60.408 52.381 0.00 0.00 0.00 4.17
1647 1840 1.072331 CACTAGGCCCTGACAACACTT 59.928 52.381 0.00 0.00 0.00 3.16
1659 1852 2.998949 CCCTTGGACCACTAGGCC 59.001 66.667 6.69 0.00 39.06 5.19
1662 1855 0.693049 ACTTGCCCTTGGACCACTAG 59.307 55.000 0.00 0.00 0.00 2.57
1713 1906 3.432252 ACTGACACGCTATGCTTAACAAC 59.568 43.478 0.00 0.00 0.00 3.32
1728 1921 2.480419 GTGCTCCACATAACACTGACAC 59.520 50.000 0.00 0.00 34.08 3.67
1729 1922 2.549992 GGTGCTCCACATAACACTGACA 60.550 50.000 0.00 0.00 35.86 3.58
1730 1923 2.076863 GGTGCTCCACATAACACTGAC 58.923 52.381 0.00 0.00 35.86 3.51
1732 1925 2.079158 CAGGTGCTCCACATAACACTG 58.921 52.381 7.70 0.00 35.86 3.66
1733 1926 1.611673 GCAGGTGCTCCACATAACACT 60.612 52.381 7.70 0.00 35.86 3.55
1734 1927 0.804989 GCAGGTGCTCCACATAACAC 59.195 55.000 7.70 0.00 35.86 3.32
1795 2008 6.717289 AGCTCCACTGTAAATTGGTAATGTA 58.283 36.000 0.00 0.00 34.19 2.29
1810 2023 8.738645 ACTCCTTATTTATTTAAGCTCCACTG 57.261 34.615 0.00 0.00 0.00 3.66
1811 2024 9.833917 GTACTCCTTATTTATTTAAGCTCCACT 57.166 33.333 0.00 0.00 0.00 4.00
1812 2025 9.833917 AGTACTCCTTATTTATTTAAGCTCCAC 57.166 33.333 0.00 0.00 0.00 4.02
1847 2060 9.314321 GCAAAAGAAGCTATGACTATGTTAGTA 57.686 33.333 0.00 0.00 39.59 1.82
1848 2061 8.043710 AGCAAAAGAAGCTATGACTATGTTAGT 58.956 33.333 0.00 0.00 41.32 2.24
1849 2062 8.430801 AGCAAAAGAAGCTATGACTATGTTAG 57.569 34.615 0.00 0.00 41.32 2.34
1850 2063 8.792830 AAGCAAAAGAAGCTATGACTATGTTA 57.207 30.769 0.00 0.00 42.53 2.41
1851 2064 7.391554 TGAAGCAAAAGAAGCTATGACTATGTT 59.608 33.333 0.00 0.00 42.53 2.71
1852 2065 6.881065 TGAAGCAAAAGAAGCTATGACTATGT 59.119 34.615 0.00 0.00 42.53 2.29
1853 2066 7.065563 AGTGAAGCAAAAGAAGCTATGACTATG 59.934 37.037 0.00 0.00 42.53 2.23
1854 2067 7.108847 AGTGAAGCAAAAGAAGCTATGACTAT 58.891 34.615 0.00 0.00 42.53 2.12
1855 2068 6.467677 AGTGAAGCAAAAGAAGCTATGACTA 58.532 36.000 0.00 0.00 42.53 2.59
1856 2069 5.312079 AGTGAAGCAAAAGAAGCTATGACT 58.688 37.500 0.00 0.00 42.53 3.41
1857 2070 5.619625 AGTGAAGCAAAAGAAGCTATGAC 57.380 39.130 0.00 0.00 42.53 3.06
1858 2071 5.764686 TCAAGTGAAGCAAAAGAAGCTATGA 59.235 36.000 0.00 0.00 42.53 2.15
1859 2072 6.005583 TCAAGTGAAGCAAAAGAAGCTATG 57.994 37.500 0.00 0.00 42.53 2.23
1860 2073 6.208204 ACATCAAGTGAAGCAAAAGAAGCTAT 59.792 34.615 0.00 0.00 42.53 2.97
1861 2074 5.532406 ACATCAAGTGAAGCAAAAGAAGCTA 59.468 36.000 0.00 0.00 42.53 3.32
1862 2075 4.340381 ACATCAAGTGAAGCAAAAGAAGCT 59.660 37.500 0.00 0.00 45.97 3.74
1863 2076 4.614946 ACATCAAGTGAAGCAAAAGAAGC 58.385 39.130 0.00 0.00 0.00 3.86
1864 2077 6.532657 ACAAACATCAAGTGAAGCAAAAGAAG 59.467 34.615 0.00 0.00 0.00 2.85
1865 2078 6.397272 ACAAACATCAAGTGAAGCAAAAGAA 58.603 32.000 0.00 0.00 0.00 2.52
1866 2079 5.964758 ACAAACATCAAGTGAAGCAAAAGA 58.035 33.333 0.00 0.00 0.00 2.52
1867 2080 7.754069 TTACAAACATCAAGTGAAGCAAAAG 57.246 32.000 0.00 0.00 0.00 2.27
1868 2081 8.602328 CATTTACAAACATCAAGTGAAGCAAAA 58.398 29.630 0.00 0.00 0.00 2.44
1869 2082 7.978414 TCATTTACAAACATCAAGTGAAGCAAA 59.022 29.630 0.00 0.00 0.00 3.68
1870 2083 7.434897 GTCATTTACAAACATCAAGTGAAGCAA 59.565 33.333 0.00 0.00 0.00 3.91
1871 2084 6.917477 GTCATTTACAAACATCAAGTGAAGCA 59.083 34.615 0.00 0.00 0.00 3.91
1872 2085 6.917477 TGTCATTTACAAACATCAAGTGAAGC 59.083 34.615 0.00 0.00 34.29 3.86
1873 2086 8.854979 TTGTCATTTACAAACATCAAGTGAAG 57.145 30.769 0.00 0.00 45.11 3.02
1887 2100 3.065233 GCGATCTGGCATTGTCATTTACA 59.935 43.478 0.00 0.00 35.88 2.41
1888 2101 3.065233 TGCGATCTGGCATTGTCATTTAC 59.935 43.478 0.00 0.00 38.17 2.01
1889 2102 3.277715 TGCGATCTGGCATTGTCATTTA 58.722 40.909 0.00 0.00 38.17 1.40
1890 2103 2.093890 TGCGATCTGGCATTGTCATTT 58.906 42.857 0.00 0.00 38.17 2.32
1891 2104 1.753930 TGCGATCTGGCATTGTCATT 58.246 45.000 0.00 0.00 38.17 2.57
1892 2105 3.482147 TGCGATCTGGCATTGTCAT 57.518 47.368 0.00 0.00 38.17 3.06
1907 2120 1.593070 GCAGCTGACGAATACAATGCG 60.593 52.381 20.43 0.00 0.00 4.73
1910 2123 3.133003 ACCTAGCAGCTGACGAATACAAT 59.867 43.478 20.43 0.00 0.00 2.71
1947 2160 5.178797 ACTAATCTTGACAATAACGCTGCT 58.821 37.500 0.00 0.00 0.00 4.24
1950 2163 5.116882 GGGACTAATCTTGACAATAACGCT 58.883 41.667 0.00 0.00 0.00 5.07
1952 2165 6.255887 GTCTGGGACTAATCTTGACAATAACG 59.744 42.308 0.00 0.00 0.00 3.18
1969 2182 7.055667 TCAATATCACAAGATAGTCTGGGAC 57.944 40.000 0.00 0.00 39.94 4.46
1971 2184 7.060383 ACTCAATATCACAAGATAGTCTGGG 57.940 40.000 0.00 0.00 39.94 4.45
2069 2284 3.005050 TGGCAAGAAAGCAGAGTTTCATG 59.995 43.478 0.00 0.00 38.66 3.07
2180 2395 6.815089 AGTGAGTTTCAGAGCTATAAGATGG 58.185 40.000 0.00 0.00 0.00 3.51
2199 2414 3.249559 GGAACACAAGCTCTTTGAGTGAG 59.750 47.826 0.00 0.00 39.27 3.51
2228 2443 3.243737 ACACAGCGTATCTCTGTTTGTGA 60.244 43.478 8.51 0.00 42.38 3.58
2244 2459 7.751732 TGTATGTCATTTTCAGATAACACAGC 58.248 34.615 0.00 0.00 0.00 4.40
2245 2460 9.712359 CATGTATGTCATTTTCAGATAACACAG 57.288 33.333 0.00 0.00 34.09 3.66
2489 2705 8.511604 TCAGAAACTTTCTCAAGATGAACTTT 57.488 30.769 0.67 0.00 38.11 2.66
2549 2901 4.260866 CCTTTGCAACAATTTGAAAGCAGG 60.261 41.667 0.00 0.00 31.42 4.85
2772 3124 7.944729 ACCATCAGAGCTAAAACATGTTAAT 57.055 32.000 12.39 6.77 0.00 1.40
2872 3224 3.201290 CATTCATGGCAGTAGAGGTGAC 58.799 50.000 0.00 0.00 0.00 3.67
2971 3323 5.977129 CCCGTTTTGATCCTTATGCATTTAC 59.023 40.000 3.54 0.00 0.00 2.01
3062 3414 3.083349 CCTCATCCCTGACCGGCA 61.083 66.667 0.00 0.00 0.00 5.69
3151 3503 5.009710 ACACGACATCAGTATGGATATTCGT 59.990 40.000 0.00 0.00 41.84 3.85
3195 3547 1.040646 TGCTTAGTAGGCTGCGCTAT 58.959 50.000 9.73 0.00 0.00 2.97
3294 3646 7.066284 TCGACTCCTGTTACTTATGTTAGGTAC 59.934 40.741 0.00 0.00 0.00 3.34
3346 3698 5.825593 AGTTCCCATTTAGTTCTCTGTGA 57.174 39.130 0.00 0.00 0.00 3.58
3378 3731 8.992349 TCACTATGAATAAGGAGAAGGATTTGA 58.008 33.333 0.00 0.00 0.00 2.69
3398 3751 9.624373 AGCACTAGAAATTCAATTGATCACTAT 57.376 29.630 9.40 0.00 0.00 2.12
3659 4013 6.228258 GCATATCATCCTTAAAACCGGTAGA 58.772 40.000 8.00 0.00 0.00 2.59
4115 4469 2.107141 GCTCGCCTTAGGTCGCAT 59.893 61.111 9.56 0.00 0.00 4.73
4233 4755 3.403936 GTGAAGGCACCACAAGAGT 57.596 52.632 4.71 0.00 39.14 3.24
4270 4792 1.747355 CTGCAGGCCACTCCTATTTTG 59.253 52.381 5.01 0.00 45.52 2.44
4315 4845 6.017934 GCTAATACATTCGATCATGGTGTTGT 60.018 38.462 2.35 0.00 0.00 3.32
4376 4906 4.865925 CCATAGTTTGGTAACGATGTTCGA 59.134 41.667 3.62 0.00 42.42 3.71
4401 4931 2.310538 CCTGTTTTGGCTTTCTCCAGT 58.689 47.619 0.00 0.00 37.44 4.00
4417 4947 1.302907 AAATCCAGAGCATCCCCTGT 58.697 50.000 0.00 0.00 33.66 4.00
4435 4965 0.465460 GCATCACGAGGCCCCATTAA 60.465 55.000 0.00 0.00 30.94 1.40
4492 5022 4.009675 GACATGTCCAGCATTAAACCTCA 58.990 43.478 15.31 0.00 35.19 3.86
4516 5046 3.349927 CCTCTCACTTCCATCAAATGCA 58.650 45.455 0.00 0.00 0.00 3.96
4562 5092 0.676466 CCACATAGCGCTTTGACCCA 60.676 55.000 30.61 5.48 0.00 4.51
4595 5125 9.886132 GAGGTTTTGACAAGGACTATAATAGAA 57.114 33.333 0.00 0.00 0.00 2.10
4608 5138 4.211374 CGAGTAACCAGAGGTTTTGACAAG 59.789 45.833 6.76 0.00 44.33 3.16
4615 5145 4.612264 TTAAGCGAGTAACCAGAGGTTT 57.388 40.909 6.76 0.00 44.33 3.27
4673 5203 2.334977 ACTGTTGTGTCATAGGTCCCA 58.665 47.619 0.00 0.00 0.00 4.37
4750 5280 6.975196 TCCTGGAAAAATGAATCACTTCAA 57.025 33.333 0.00 0.00 44.29 2.69
4850 5380 2.813754 CTGAAATTTGCAAGGAGGACGA 59.186 45.455 0.00 0.00 0.00 4.20
4925 5457 7.498239 TGCAAAATGTCCAATTTTCATCAGAAA 59.502 29.630 0.00 0.00 41.78 2.52
4926 5458 6.990939 TGCAAAATGTCCAATTTTCATCAGAA 59.009 30.769 0.00 0.00 0.00 3.02
4927 5459 6.522946 TGCAAAATGTCCAATTTTCATCAGA 58.477 32.000 0.00 0.00 0.00 3.27
5195 5727 6.457159 TTTTAGAAGGGACCCAATAGACAA 57.543 37.500 14.60 0.00 0.00 3.18
5196 5728 6.457159 TTTTTAGAAGGGACCCAATAGACA 57.543 37.500 14.60 0.00 0.00 3.41
5444 5979 9.378551 TGGTGTGATCTACATACTTGTAATTTC 57.621 33.333 0.00 0.00 42.24 2.17
5602 6139 6.317391 GGCAGCAGTAAATAGAGTCAAGAAAT 59.683 38.462 0.00 0.00 0.00 2.17
5634 6171 5.830000 AACAGGGAAAGTAACAACAAGTC 57.170 39.130 0.00 0.00 0.00 3.01
5636 6173 8.630037 AGAATAAACAGGGAAAGTAACAACAAG 58.370 33.333 0.00 0.00 0.00 3.16
5696 6233 0.734253 CCCGTTCTCTCTGTGCTTCG 60.734 60.000 0.00 0.00 0.00 3.79
5830 6367 6.324770 ACAAGCATATTCTGGGAAAAATAGGG 59.675 38.462 0.00 0.00 0.00 3.53
5835 6372 6.719370 ACTGTACAAGCATATTCTGGGAAAAA 59.281 34.615 0.00 0.00 0.00 1.94
5959 6611 6.653320 TGGATGGTTTGTATAGTCAACAGTTC 59.347 38.462 0.00 0.00 0.00 3.01
5963 6615 6.121776 AGTGGATGGTTTGTATAGTCAACA 57.878 37.500 0.00 0.00 0.00 3.33
6021 6673 4.752101 CCATGTAGTAGCATCTAAGTTGGC 59.248 45.833 0.00 0.00 0.00 4.52
6073 6725 2.029666 GTGGGATCCATCGCCGAG 59.970 66.667 15.23 0.00 38.81 4.63
6076 6728 2.383245 ATCACGTGGGATCCATCGCC 62.383 60.000 21.89 3.25 38.81 5.54
6096 6748 7.118723 TGCTAATGACAAAAGGGAGTATTGAT 58.881 34.615 0.00 0.00 0.00 2.57
6166 6818 2.347490 CCTGGACACCAACCGGAG 59.653 66.667 9.46 0.00 35.98 4.63
6167 6819 3.246112 CCCTGGACACCAACCGGA 61.246 66.667 9.46 0.00 35.98 5.14
6168 6820 4.344865 CCCCTGGACACCAACCGG 62.345 72.222 0.00 0.00 38.77 5.28
6169 6821 4.344865 CCCCCTGGACACCAACCG 62.345 72.222 0.00 0.00 30.80 4.44
6172 6824 0.104356 TAACTCCCCCTGGACACCAA 60.104 55.000 0.00 0.00 35.03 3.67
6173 6825 0.120377 ATAACTCCCCCTGGACACCA 59.880 55.000 0.00 0.00 35.03 4.17
6175 6827 4.790718 AATAATAACTCCCCCTGGACAC 57.209 45.455 0.00 0.00 35.03 3.67
6176 6828 6.154645 TCATAATAATAACTCCCCCTGGACA 58.845 40.000 0.00 0.00 35.03 4.02
6178 6830 7.715267 TTTCATAATAATAACTCCCCCTGGA 57.285 36.000 0.00 0.00 38.75 3.86
6179 6831 7.782644 TGTTTTCATAATAATAACTCCCCCTGG 59.217 37.037 0.00 0.00 0.00 4.45
6180 6832 8.760980 TGTTTTCATAATAATAACTCCCCCTG 57.239 34.615 0.00 0.00 0.00 4.45
6181 6833 9.421399 CTTGTTTTCATAATAATAACTCCCCCT 57.579 33.333 0.00 0.00 0.00 4.79
6199 6866 4.158384 CGGACATACATGCACTTGTTTTC 58.842 43.478 0.00 0.00 0.00 2.29
6224 7255 8.413229 CCAACTTTATGGGGATAATACAAACAG 58.587 37.037 0.00 0.00 36.79 3.16
6375 7406 5.086621 AGGAAATAATTGACTTGGCAAGGT 58.913 37.500 29.26 15.83 0.00 3.50
6554 7587 3.119173 TGTCAACAGGCAAGAACCAAAAG 60.119 43.478 0.00 0.00 0.00 2.27
6812 7845 7.281774 AGCACAAGTATGATAAATGAGTGGAAG 59.718 37.037 0.00 0.00 0.00 3.46
6819 7854 9.836864 ATAGTCAAGCACAAGTATGATAAATGA 57.163 29.630 0.00 0.00 0.00 2.57
7290 8332 9.270576 CGAAATTCATTGAAGTCTTGTAATGAG 57.729 33.333 15.84 6.52 39.74 2.90
7437 8481 5.898972 AGGATAAACAGAGAGAGCAAGAGAT 59.101 40.000 0.00 0.00 0.00 2.75
7536 8581 2.194271 GTATCTTCGCTCGGAAAGGTG 58.806 52.381 0.00 0.00 33.34 4.00
7540 8585 4.556233 CCATATGTATCTTCGCTCGGAAA 58.444 43.478 1.24 0.00 33.34 3.13
7623 8668 6.599244 GGTATATAAATGGAGCAGCAGCATTA 59.401 38.462 3.17 0.00 45.49 1.90
7628 8673 5.106396 GCAAGGTATATAAATGGAGCAGCAG 60.106 44.000 0.00 0.00 0.00 4.24
7645 8690 4.350368 TCAGTGAAATGAGTGCAAGGTA 57.650 40.909 0.00 0.00 0.00 3.08
7653 8698 6.262944 TGCATACAAACTTCAGTGAAATGAGT 59.737 34.615 14.37 10.16 0.00 3.41
7657 8702 9.577110 CATAATGCATACAAACTTCAGTGAAAT 57.423 29.630 7.06 0.00 0.00 2.17
7776 8823 7.492352 AATTAGCTTCGTTACCATATTCACC 57.508 36.000 0.00 0.00 0.00 4.02
7791 8838 5.802451 GCCACTGCTCTTTAAAATTAGCTTC 59.198 40.000 14.45 1.53 35.95 3.86
7924 8971 2.143925 CGGGCTTTCTTCTTCGAAGTT 58.856 47.619 23.85 0.00 0.00 2.66
8068 9115 0.032130 TGATATCTGCGAAGACGGGC 59.968 55.000 0.00 0.00 40.15 6.13
8109 9157 1.745320 ATCCCTAACTGCCTACCGCG 61.745 60.000 0.00 0.00 42.08 6.46
8110 9158 1.272769 CTATCCCTAACTGCCTACCGC 59.727 57.143 0.00 0.00 38.31 5.68
8111 9159 1.893801 CCTATCCCTAACTGCCTACCG 59.106 57.143 0.00 0.00 0.00 4.02
8132 9180 4.256180 CTGCATCGCCCCTACCCC 62.256 72.222 0.00 0.00 0.00 4.95
8136 9184 4.175337 GGCACTGCATCGCCCCTA 62.175 66.667 14.21 0.00 42.82 3.53
8178 9227 2.099062 GCAGAACAAGCATCCGCG 59.901 61.111 0.00 0.00 45.49 6.46
8179 9228 2.486966 GGCAGAACAAGCATCCGC 59.513 61.111 0.00 0.00 38.99 5.54
8338 9389 2.325583 ATTTACCACCACATCGCGAT 57.674 45.000 17.62 17.62 0.00 4.58
8342 9393 7.095229 CCTTGTATCATATTTACCACCACATCG 60.095 40.741 0.00 0.00 0.00 3.84
8375 9426 3.510388 TTTGTCACGCCAAATTCACAA 57.490 38.095 0.00 0.00 29.67 3.33
8376 9427 3.182967 GTTTTGTCACGCCAAATTCACA 58.817 40.909 0.00 0.00 34.50 3.58
8398 9450 7.277539 TGCTAAAACAGATTTTCAAAACTGTGG 59.722 33.333 13.98 7.80 46.86 4.17
8424 9476 4.508662 GGTAAAGACATCAGCAGCTTACT 58.491 43.478 0.00 0.00 0.00 2.24
8425 9477 3.623510 GGGTAAAGACATCAGCAGCTTAC 59.376 47.826 0.00 0.00 0.00 2.34
8444 9642 1.480954 CGCTAGGTCTACACATTGGGT 59.519 52.381 0.00 0.00 0.00 4.51
8493 9692 3.741476 CTTGCTTCACGGGGCAGC 61.741 66.667 0.00 0.00 39.68 5.25
8518 9718 9.952188 CACGATCATATATATTGGGTACTACAG 57.048 37.037 0.00 0.00 0.00 2.74
8520 9720 8.910944 ACCACGATCATATATATTGGGTACTAC 58.089 37.037 12.83 0.00 0.00 2.73
8586 9788 6.444633 ACAGAGTATTGCATACATACGGTAC 58.555 40.000 0.00 0.00 38.21 3.34
8589 9791 7.145985 ACTAACAGAGTATTGCATACATACGG 58.854 38.462 0.00 0.00 36.27 4.02
8590 9792 8.575565 AACTAACAGAGTATTGCATACATACG 57.424 34.615 0.00 0.00 37.44 3.06
8628 9830 7.390440 ACCGACTGATATGACAAAATTCTCAAA 59.610 33.333 0.00 0.00 0.00 2.69
8645 9847 0.670546 CCACGCAAGAACCGACTGAT 60.671 55.000 0.00 0.00 43.62 2.90
8665 9867 2.832201 GGGCTGCATTGCTCTCCC 60.832 66.667 10.49 12.88 0.00 4.30
8970 10288 2.091885 AGTTGGCCAAGGAGAAGAACAA 60.092 45.455 21.21 0.00 0.00 2.83
8971 10289 1.494721 AGTTGGCCAAGGAGAAGAACA 59.505 47.619 21.21 0.00 0.00 3.18
8972 10290 2.278332 AGTTGGCCAAGGAGAAGAAC 57.722 50.000 21.21 4.04 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.