Multiple sequence alignment - TraesCS5D01G304800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G304800 chr5D 100.000 4706 0 0 1 4706 399948931 399953636 0.000000e+00 8691
1 TraesCS5D01G304800 chr5D 86.000 100 14 0 14 113 546906678 546906579 1.790000e-19 108
2 TraesCS5D01G304800 chr5B 95.441 2347 78 11 1891 4227 479831394 479833721 0.000000e+00 3714
3 TraesCS5D01G304800 chr5B 88.869 1141 46 42 757 1881 479830351 479831426 0.000000e+00 1328
4 TraesCS5D01G304800 chr5B 89.877 731 47 13 8 726 479829221 479829936 0.000000e+00 915
5 TraesCS5D01G304800 chr5B 94.301 193 9 2 4376 4567 711157370 711157179 1.280000e-75 294
6 TraesCS5D01G304800 chr5B 97.619 168 4 0 4385 4552 482319176 482319009 5.960000e-74 289
7 TraesCS5D01G304800 chr5B 97.419 155 4 0 4552 4706 328365706 328365860 1.000000e-66 265
8 TraesCS5D01G304800 chr5A 90.530 2640 133 44 1 2578 505506152 505508736 0.000000e+00 3382
9 TraesCS5D01G304800 chr5A 92.273 1566 92 12 2574 4134 505508837 505510378 0.000000e+00 2194
10 TraesCS5D01G304800 chr5A 86.082 194 7 7 4212 4385 505510595 505510788 1.730000e-44 191
11 TraesCS5D01G304800 chr5A 96.825 63 2 0 4132 4194 505510539 505510601 6.440000e-19 106
12 TraesCS5D01G304800 chr4D 96.648 179 4 2 4385 4562 325550025 325549848 3.560000e-76 296
13 TraesCS5D01G304800 chr7B 97.619 168 4 0 4385 4552 670047564 670047397 5.960000e-74 289
14 TraesCS5D01G304800 chr7B 94.505 182 8 2 4385 4565 625697723 625697903 3.590000e-71 279
15 TraesCS5D01G304800 chr7A 97.619 168 4 0 4385 4552 182858276 182858109 5.960000e-74 289
16 TraesCS5D01G304800 chr6A 97.619 168 4 0 4385 4552 585787368 585787535 5.960000e-74 289
17 TraesCS5D01G304800 chr6A 97.419 155 4 0 4552 4706 176980046 176980200 1.000000e-66 265
18 TraesCS5D01G304800 chr4B 97.076 171 5 0 4382 4552 424602485 424602655 5.960000e-74 289
19 TraesCS5D01G304800 chr1A 97.619 168 4 0 4385 4552 472540096 472539929 5.960000e-74 289
20 TraesCS5D01G304800 chr6D 95.758 165 6 1 4543 4706 284659748 284659584 1.000000e-66 265
21 TraesCS5D01G304800 chr6D 95.679 162 6 1 4546 4706 201987248 201987409 4.670000e-65 259
22 TraesCS5D01G304800 chr6D 95.122 164 7 1 4544 4706 104588577 104588740 1.680000e-64 257
23 TraesCS5D01G304800 chr4A 96.226 159 6 0 4548 4706 41397990 41397832 1.300000e-65 261
24 TraesCS5D01G304800 chr3D 95.181 166 7 1 4542 4706 71527744 71527579 1.300000e-65 261
25 TraesCS5D01G304800 chr2D 95.706 163 6 1 4545 4706 20189301 20189463 1.300000e-65 261
26 TraesCS5D01G304800 chr7D 95.679 162 6 1 4546 4706 53412418 53412257 4.670000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G304800 chr5D 399948931 399953636 4705 False 8691.000000 8691 100.000000 1 4706 1 chr5D.!!$F1 4705
1 TraesCS5D01G304800 chr5B 479829221 479833721 4500 False 1985.666667 3714 91.395667 8 4227 3 chr5B.!!$F2 4219
2 TraesCS5D01G304800 chr5A 505506152 505510788 4636 False 1468.250000 3382 91.427500 1 4385 4 chr5A.!!$F1 4384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.035458 AGAAACCTCAAGCTCCACCG 59.965 55.000 0.00 0.0 0.00 4.94 F
676 695 0.098728 GGGTTGAATTCATCCGTGCG 59.901 55.000 23.23 0.0 36.75 5.34 F
706 725 0.168128 GTTGTAATGCCGGTGTCTGC 59.832 55.000 1.90 0.0 0.00 4.26 F
828 1256 0.601841 CTTTAGTCCGGTTGCCACGT 60.602 55.000 0.00 0.0 0.00 4.49 F
1161 1617 1.680651 CCTCTGTGCGTCCTCCTCT 60.681 63.158 0.00 0.0 0.00 3.69 F
3022 3592 0.461870 TACCATGCCTGCTTACTGCG 60.462 55.000 0.00 0.0 46.63 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1031 1487 0.319211 CTTGTCCGCGTAGAACACCA 60.319 55.0 4.92 0.0 0.00 4.17 R
2279 2740 0.037447 GCTGGCCAGACTCCTTCTTT 59.963 55.0 37.21 0.0 28.96 2.52 R
2285 2746 1.965754 ATCGAAGCTGGCCAGACTCC 61.966 60.0 37.21 19.2 0.00 3.85 R
2934 3504 2.996621 GCATATCATAGGACAGCGGAAC 59.003 50.0 0.00 0.0 0.00 3.62 R
3210 3785 0.911769 CTTCCCTGTGGTCATGGCTA 59.088 55.0 0.00 0.0 30.97 3.93 R
4524 5295 0.034756 CCGGAACATCACACACTCCA 59.965 55.0 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 0.035458 AGAAACCTCAAGCTCCACCG 59.965 55.000 0.00 0.00 0.00 4.94
161 162 4.810790 CTCCTAACACAACGACTTCAGAT 58.189 43.478 0.00 0.00 0.00 2.90
248 250 1.515304 GGCGTGTGCGTTGTTTTGT 60.515 52.632 0.00 0.00 44.10 2.83
266 268 2.676076 TGTTTTTACCGAGAGTACCGC 58.324 47.619 0.00 0.00 0.00 5.68
267 269 1.995484 GTTTTTACCGAGAGTACCGCC 59.005 52.381 0.00 0.00 0.00 6.13
284 286 1.205064 CCGTCGCTTTGCTGAGTTG 59.795 57.895 0.00 0.00 0.00 3.16
326 328 0.671781 GCCGAGTGATGTGCTCTTGT 60.672 55.000 0.00 0.00 0.00 3.16
351 358 4.083271 GCATTCCGATCACCTTAATAAGCC 60.083 45.833 0.00 0.00 0.00 4.35
353 360 1.798813 CCGATCACCTTAATAAGCCGC 59.201 52.381 0.00 0.00 0.00 6.53
403 410 1.328279 GGGAACTTGGGAAGGTTGTG 58.672 55.000 0.00 0.00 0.00 3.33
404 411 1.411074 GGGAACTTGGGAAGGTTGTGT 60.411 52.381 0.00 0.00 0.00 3.72
437 444 2.289010 GGCTTGATGTTTCTGGGTTTGG 60.289 50.000 0.00 0.00 0.00 3.28
496 503 0.514691 CTGCTGAACTCGAAGTTGGC 59.485 55.000 5.20 9.03 38.80 4.52
508 522 0.598065 AAGTTGGCGTGAGAAATGGC 59.402 50.000 0.00 0.00 40.77 4.40
509 523 1.154225 GTTGGCGTGAGAAATGGCG 60.154 57.895 0.00 0.00 43.29 5.69
551 565 3.302365 TTTTGTTATCTGCTTGCCTGC 57.698 42.857 0.00 0.00 0.00 4.85
554 568 1.020437 GTTATCTGCTTGCCTGCTCC 58.980 55.000 0.00 0.00 0.00 4.70
555 569 0.914644 TTATCTGCTTGCCTGCTCCT 59.085 50.000 0.00 0.00 0.00 3.69
568 582 4.164030 TGCCTGCTCCTAATTATGTGAGAA 59.836 41.667 9.70 1.05 0.00 2.87
570 584 5.180868 GCCTGCTCCTAATTATGTGAGAATG 59.819 44.000 9.70 0.81 0.00 2.67
584 601 4.286032 TGTGAGAATGGGTACTACTGCTTT 59.714 41.667 0.00 0.00 0.00 3.51
586 603 5.122396 GTGAGAATGGGTACTACTGCTTTTG 59.878 44.000 0.00 0.00 0.00 2.44
588 605 2.194201 TGGGTACTACTGCTTTTGGC 57.806 50.000 0.00 0.00 42.22 4.52
590 607 1.004394 GGGTACTACTGCTTTTGGCCT 59.996 52.381 3.32 0.00 40.92 5.19
591 608 2.357075 GGTACTACTGCTTTTGGCCTC 58.643 52.381 3.32 0.00 40.92 4.70
592 609 2.027100 GGTACTACTGCTTTTGGCCTCT 60.027 50.000 3.32 0.00 40.92 3.69
593 610 2.481289 ACTACTGCTTTTGGCCTCTC 57.519 50.000 3.32 0.00 40.92 3.20
611 629 0.614294 TCGGGTAGGCAATTTTCCGA 59.386 50.000 0.00 0.00 43.29 4.55
618 636 5.340803 GGTAGGCAATTTTCCGAAGAAATC 58.659 41.667 0.00 0.00 41.55 2.17
632 650 4.956184 CGAAGAAATCGCCGAGAATTTTAC 59.044 41.667 0.00 0.00 45.89 2.01
643 662 6.540205 GCCGAGAATTTTACGTTTTGTATCT 58.460 36.000 0.00 0.00 31.81 1.98
659 678 6.819397 TTGTATCTATCTCGTGTAGATGGG 57.181 41.667 14.42 2.53 44.95 4.00
667 686 4.755411 TCTCGTGTAGATGGGTTGAATTC 58.245 43.478 0.00 0.00 0.00 2.17
676 695 0.098728 GGGTTGAATTCATCCGTGCG 59.901 55.000 23.23 0.00 36.75 5.34
706 725 0.168128 GTTGTAATGCCGGTGTCTGC 59.832 55.000 1.90 0.00 0.00 4.26
726 745 5.303845 TCTGCTGAGATGATAGTGCAATACT 59.696 40.000 0.00 0.00 43.56 2.12
727 746 6.491403 TCTGCTGAGATGATAGTGCAATACTA 59.509 38.462 0.00 0.00 45.50 1.82
728 747 6.450545 TGCTGAGATGATAGTGCAATACTAC 58.549 40.000 0.00 0.00 44.30 2.73
817 1245 3.455990 GCCTACTGCCTACTTTAGTCC 57.544 52.381 0.00 0.00 0.00 3.85
828 1256 0.601841 CTTTAGTCCGGTTGCCACGT 60.602 55.000 0.00 0.00 0.00 4.49
915 1345 3.093172 CTTCCCCTGGCCCTCCTC 61.093 72.222 0.00 0.00 0.00 3.71
1158 1614 4.459089 GGCCTCTGTGCGTCCTCC 62.459 72.222 0.00 0.00 0.00 4.30
1159 1615 3.386237 GCCTCTGTGCGTCCTCCT 61.386 66.667 0.00 0.00 0.00 3.69
1161 1617 1.680651 CCTCTGTGCGTCCTCCTCT 60.681 63.158 0.00 0.00 0.00 3.69
1164 1620 3.057547 CTGTGCGTCCTCCTCTCCG 62.058 68.421 0.00 0.00 0.00 4.63
1166 1622 4.742649 TGCGTCCTCCTCTCCGCT 62.743 66.667 0.00 0.00 45.90 5.52
1167 1623 3.894947 GCGTCCTCCTCTCCGCTC 61.895 72.222 0.00 0.00 42.66 5.03
1201 1657 4.468689 CCCCCGTTCCGCTCTTCC 62.469 72.222 0.00 0.00 0.00 3.46
1250 1708 4.862018 GCTCACTCACTCTGTATCTGTTTC 59.138 45.833 0.00 0.00 0.00 2.78
1394 1852 2.318360 CGCGTCTCTCTCGTCTCG 59.682 66.667 0.00 0.00 0.00 4.04
1624 2082 3.324846 AGAGCATGTTACTGTTCCAGTGA 59.675 43.478 7.13 0.00 45.01 3.41
1625 2083 4.065088 GAGCATGTTACTGTTCCAGTGAA 58.935 43.478 7.13 0.00 45.01 3.18
1686 2144 3.753272 AGCGAGCACATAGTTGAACAATT 59.247 39.130 0.00 0.00 0.00 2.32
1700 2158 6.428159 AGTTGAACAATTCGCTACTTTCTCAT 59.572 34.615 0.00 0.00 0.00 2.90
1714 2173 6.332976 ACTTTCTCATAGAATGAATGGGGT 57.667 37.500 8.92 0.00 39.11 4.95
1775 2235 7.970061 TGAGTTTTCAGTTTTTCAGATCAACTG 59.030 33.333 13.90 13.90 45.93 3.16
1783 2243 6.936900 AGTTTTTCAGATCAACTGCTAGCTAA 59.063 34.615 17.23 0.00 45.38 3.09
1860 2320 6.892658 TCATTGTGTGGCTTTAGTTTGTAT 57.107 33.333 0.00 0.00 0.00 2.29
1866 2326 6.021596 GTGTGGCTTTAGTTTGTATTGATCG 58.978 40.000 0.00 0.00 0.00 3.69
1868 2328 6.874664 TGTGGCTTTAGTTTGTATTGATCGTA 59.125 34.615 0.00 0.00 0.00 3.43
1982 2442 6.233434 AGTATGAAACAGACAAAGAGATGCA 58.767 36.000 0.00 0.00 0.00 3.96
2199 2660 2.489938 GGTATGTGACCCTGCTGAAA 57.510 50.000 0.00 0.00 43.25 2.69
2230 2691 5.033589 AGAAGGCAGAATACTTGAGATGG 57.966 43.478 0.00 0.00 0.00 3.51
2241 2702 3.871485 ACTTGAGATGGTCTTCATGCTC 58.129 45.455 0.00 0.00 35.97 4.26
2279 2740 1.695065 TAGGAGGAGGACTTGGAGGA 58.305 55.000 0.00 0.00 0.00 3.71
2285 2746 2.909662 AGGAGGACTTGGAGGAAAGAAG 59.090 50.000 0.00 0.00 0.00 2.85
2856 3426 5.948588 TCATTGTTGTCATTATTGAACCCG 58.051 37.500 0.00 0.00 32.48 5.28
2934 3504 6.306356 CACAAAGCAGACTGGATTTTTATTCG 59.694 38.462 4.26 0.00 0.00 3.34
2997 3567 2.026636 TGCTGTAGTTGGGGTATGGTTC 60.027 50.000 0.00 0.00 0.00 3.62
3022 3592 0.461870 TACCATGCCTGCTTACTGCG 60.462 55.000 0.00 0.00 46.63 5.18
3031 3606 0.894835 TGCTTACTGCGATGGAGTGA 59.105 50.000 0.92 0.00 46.63 3.41
3451 4026 1.489481 TATCAGGAGGAGCCACAGTG 58.511 55.000 0.00 0.00 40.02 3.66
3480 4055 1.300620 CCCAACTGAAGACGACGCA 60.301 57.895 0.00 0.00 0.00 5.24
3521 4096 0.539438 AGCCGAGAGCCTGGAGATAG 60.539 60.000 0.00 0.00 45.47 2.08
3528 4103 0.398239 AGCCTGGAGATAGCAGCAGA 60.398 55.000 0.00 0.00 0.00 4.26
3556 4131 1.584380 GCACAGAAGCCCAGCTGAAG 61.584 60.000 17.39 7.37 39.62 3.02
3559 4134 0.035881 CAGAAGCCCAGCTGAAGACA 59.964 55.000 17.39 0.00 39.62 3.41
3562 4137 0.183492 AAGCCCAGCTGAAGACAACA 59.817 50.000 17.39 0.00 39.62 3.33
3563 4138 0.183492 AGCCCAGCTGAAGACAACAA 59.817 50.000 17.39 0.00 37.57 2.83
3565 4140 1.679139 CCCAGCTGAAGACAACAACA 58.321 50.000 17.39 0.00 0.00 3.33
3587 4162 0.809241 GGTCATCGCAAGCAGAGGAG 60.809 60.000 2.58 0.00 37.18 3.69
3702 4277 0.602562 GATCTCATCGGGAGCAGAGG 59.397 60.000 0.75 0.00 43.70 3.69
3703 4278 0.105760 ATCTCATCGGGAGCAGAGGT 60.106 55.000 0.75 0.00 43.70 3.85
3704 4279 0.551396 TCTCATCGGGAGCAGAGGTA 59.449 55.000 0.75 0.00 43.70 3.08
3863 4438 3.119708 GCTCGCTTGATTTGATGAGGTTT 60.120 43.478 0.00 0.00 0.00 3.27
3871 4446 0.250124 TTGATGAGGTTTGTCGCCGT 60.250 50.000 0.00 0.00 0.00 5.68
3896 4471 1.414919 TGTAGGCTCTGTTCCGTTGTT 59.585 47.619 0.00 0.00 0.00 2.83
3947 4522 1.411246 GCCGTATGTGTAGGATCCACA 59.589 52.381 15.82 13.27 46.03 4.17
3948 4523 2.545952 GCCGTATGTGTAGGATCCACAG 60.546 54.545 15.82 4.88 45.25 3.66
3949 4524 2.693591 CCGTATGTGTAGGATCCACAGT 59.306 50.000 15.82 10.08 45.25 3.55
3950 4525 3.132289 CCGTATGTGTAGGATCCACAGTT 59.868 47.826 15.82 8.82 45.25 3.16
4014 4593 1.225704 CAGGTTGGATCCCTGGCTC 59.774 63.158 9.90 0.00 44.77 4.70
4015 4594 1.083706 AGGTTGGATCCCTGGCTCT 59.916 57.895 9.90 0.00 0.00 4.09
4016 4595 1.225704 GGTTGGATCCCTGGCTCTG 59.774 63.158 9.90 0.00 0.00 3.35
4017 4596 1.225704 GTTGGATCCCTGGCTCTGG 59.774 63.158 9.90 0.00 0.00 3.86
4018 4597 2.683465 TTGGATCCCTGGCTCTGGC 61.683 63.158 9.90 0.00 37.82 4.85
4019 4598 2.771762 GGATCCCTGGCTCTGGCT 60.772 66.667 0.00 0.00 38.73 4.75
4035 4614 1.478916 TGGCTGTAAGTATAGCGTGCA 59.521 47.619 1.59 0.00 40.78 4.57
4036 4615 2.093921 TGGCTGTAAGTATAGCGTGCAA 60.094 45.455 0.00 0.00 40.78 4.08
4037 4616 3.131396 GGCTGTAAGTATAGCGTGCAAT 58.869 45.455 0.00 0.00 40.78 3.56
4038 4617 3.059597 GGCTGTAAGTATAGCGTGCAATG 60.060 47.826 0.00 0.00 40.78 2.82
4039 4618 3.604772 GCTGTAAGTATAGCGTGCAATGC 60.605 47.826 0.00 0.00 43.70 3.56
4080 4659 6.978659 TCTTGGTATAGACGTTGCTTGAATAG 59.021 38.462 0.00 0.00 0.00 1.73
4200 4951 1.347707 TCTCTGGACGATGCAAAAGGT 59.652 47.619 0.00 0.00 0.00 3.50
4266 5017 2.115911 AGTCCGGTCTCTAGCAGCG 61.116 63.158 0.00 6.23 34.52 5.18
4277 5028 0.723981 CTAGCAGCGAACTTTCAGGC 59.276 55.000 0.00 0.00 0.00 4.85
4289 5040 2.027653 ACTTTCAGGCTGCTTACTCTCC 60.028 50.000 10.34 0.00 0.00 3.71
4320 5091 7.765360 GCAAAATCAAGGGATATGTGAAATTGA 59.235 33.333 0.00 0.00 32.09 2.57
4337 5108 2.704725 TGAATGTTGAAGCCGCTTTC 57.295 45.000 7.16 0.12 0.00 2.62
4343 5114 1.282248 TTGAAGCCGCTTTCGACTCG 61.282 55.000 7.16 0.00 38.10 4.18
4385 5156 4.397481 TGGTGCAATACTGAGAGATGAG 57.603 45.455 0.00 0.00 0.00 2.90
4386 5157 3.133542 TGGTGCAATACTGAGAGATGAGG 59.866 47.826 0.00 0.00 0.00 3.86
4387 5158 3.129871 GTGCAATACTGAGAGATGAGGC 58.870 50.000 0.00 0.00 0.00 4.70
4388 5159 3.036819 TGCAATACTGAGAGATGAGGCT 58.963 45.455 0.00 0.00 0.00 4.58
4389 5160 3.181468 TGCAATACTGAGAGATGAGGCTG 60.181 47.826 0.00 0.00 0.00 4.85
4390 5161 3.803021 GCAATACTGAGAGATGAGGCTGG 60.803 52.174 0.00 0.00 0.00 4.85
4391 5162 2.836636 TACTGAGAGATGAGGCTGGT 57.163 50.000 0.00 0.00 0.00 4.00
4392 5163 1.484038 ACTGAGAGATGAGGCTGGTC 58.516 55.000 0.00 0.00 0.00 4.02
4393 5164 1.272928 ACTGAGAGATGAGGCTGGTCA 60.273 52.381 0.00 0.00 0.00 4.02
4394 5165 2.040939 CTGAGAGATGAGGCTGGTCAT 58.959 52.381 0.00 0.00 40.00 3.06
4395 5166 3.229293 CTGAGAGATGAGGCTGGTCATA 58.771 50.000 0.00 0.00 37.29 2.15
4396 5167 3.640498 CTGAGAGATGAGGCTGGTCATAA 59.360 47.826 0.00 0.00 37.29 1.90
4397 5168 4.229639 TGAGAGATGAGGCTGGTCATAAT 58.770 43.478 0.00 0.00 37.29 1.28
4398 5169 4.040095 TGAGAGATGAGGCTGGTCATAATG 59.960 45.833 0.00 0.00 37.29 1.90
4399 5170 3.327172 AGAGATGAGGCTGGTCATAATGG 59.673 47.826 0.00 0.00 37.29 3.16
4400 5171 2.374504 AGATGAGGCTGGTCATAATGGG 59.625 50.000 0.00 0.00 37.29 4.00
4401 5172 0.183492 TGAGGCTGGTCATAATGGGC 59.817 55.000 0.00 0.00 0.00 5.36
4402 5173 0.183492 GAGGCTGGTCATAATGGGCA 59.817 55.000 0.00 0.00 0.00 5.36
4403 5174 0.630673 AGGCTGGTCATAATGGGCAA 59.369 50.000 0.00 0.00 0.00 4.52
4404 5175 1.035139 GGCTGGTCATAATGGGCAAG 58.965 55.000 0.00 0.00 0.00 4.01
4405 5176 1.410083 GGCTGGTCATAATGGGCAAGA 60.410 52.381 0.00 0.00 0.00 3.02
4406 5177 2.378038 GCTGGTCATAATGGGCAAGAA 58.622 47.619 0.00 0.00 0.00 2.52
4407 5178 2.961062 GCTGGTCATAATGGGCAAGAAT 59.039 45.455 0.00 0.00 0.00 2.40
4408 5179 4.144297 GCTGGTCATAATGGGCAAGAATA 58.856 43.478 0.00 0.00 0.00 1.75
4409 5180 4.768968 GCTGGTCATAATGGGCAAGAATAT 59.231 41.667 0.00 0.00 0.00 1.28
4410 5181 5.945784 GCTGGTCATAATGGGCAAGAATATA 59.054 40.000 0.00 0.00 0.00 0.86
4411 5182 6.434028 GCTGGTCATAATGGGCAAGAATATAA 59.566 38.462 0.00 0.00 0.00 0.98
4412 5183 7.362401 GCTGGTCATAATGGGCAAGAATATAAG 60.362 40.741 0.00 0.00 0.00 1.73
4413 5184 6.434028 TGGTCATAATGGGCAAGAATATAAGC 59.566 38.462 0.00 0.00 0.00 3.09
4414 5185 6.660949 GGTCATAATGGGCAAGAATATAAGCT 59.339 38.462 0.00 0.00 0.00 3.74
4415 5186 7.829211 GGTCATAATGGGCAAGAATATAAGCTA 59.171 37.037 0.00 0.00 0.00 3.32
4416 5187 8.887717 GTCATAATGGGCAAGAATATAAGCTAG 58.112 37.037 0.00 0.00 0.00 3.42
4417 5188 8.605947 TCATAATGGGCAAGAATATAAGCTAGT 58.394 33.333 0.00 0.00 0.00 2.57
4418 5189 9.890629 CATAATGGGCAAGAATATAAGCTAGTA 57.109 33.333 0.00 0.00 0.00 1.82
4420 5191 8.622948 AATGGGCAAGAATATAAGCTAGTAAC 57.377 34.615 0.00 0.00 0.00 2.50
4421 5192 7.374975 TGGGCAAGAATATAAGCTAGTAACT 57.625 36.000 0.00 0.00 0.00 2.24
4422 5193 7.802117 TGGGCAAGAATATAAGCTAGTAACTT 58.198 34.615 0.00 0.00 0.00 2.66
4423 5194 8.930527 TGGGCAAGAATATAAGCTAGTAACTTA 58.069 33.333 0.00 0.00 34.29 2.24
4424 5195 9.205719 GGGCAAGAATATAAGCTAGTAACTTAC 57.794 37.037 0.00 0.00 32.67 2.34
4425 5196 9.760077 GGCAAGAATATAAGCTAGTAACTTACA 57.240 33.333 1.79 0.00 32.67 2.41
4433 5204 5.402997 AGCTAGTAACTTACACACTTCCC 57.597 43.478 1.79 0.00 0.00 3.97
4434 5205 5.085219 AGCTAGTAACTTACACACTTCCCT 58.915 41.667 1.79 0.00 0.00 4.20
4435 5206 6.251471 AGCTAGTAACTTACACACTTCCCTA 58.749 40.000 1.79 0.00 0.00 3.53
4436 5207 6.377712 AGCTAGTAACTTACACACTTCCCTAG 59.622 42.308 1.79 0.00 0.00 3.02
4437 5208 6.376581 GCTAGTAACTTACACACTTCCCTAGA 59.623 42.308 1.79 0.00 0.00 2.43
4438 5209 6.587206 AGTAACTTACACACTTCCCTAGAC 57.413 41.667 1.79 0.00 0.00 2.59
4439 5210 6.313324 AGTAACTTACACACTTCCCTAGACT 58.687 40.000 1.79 0.00 0.00 3.24
4440 5211 7.465116 AGTAACTTACACACTTCCCTAGACTA 58.535 38.462 1.79 0.00 0.00 2.59
4441 5212 8.114743 AGTAACTTACACACTTCCCTAGACTAT 58.885 37.037 1.79 0.00 0.00 2.12
4442 5213 6.777213 ACTTACACACTTCCCTAGACTATG 57.223 41.667 0.00 0.00 0.00 2.23
4443 5214 6.254522 ACTTACACACTTCCCTAGACTATGT 58.745 40.000 0.00 0.00 0.00 2.29
4444 5215 6.724905 ACTTACACACTTCCCTAGACTATGTT 59.275 38.462 0.00 0.00 0.00 2.71
4445 5216 7.892241 ACTTACACACTTCCCTAGACTATGTTA 59.108 37.037 0.00 0.00 0.00 2.41
4446 5217 6.527057 ACACACTTCCCTAGACTATGTTAC 57.473 41.667 0.00 0.00 0.00 2.50
4447 5218 6.254522 ACACACTTCCCTAGACTATGTTACT 58.745 40.000 0.00 0.00 0.00 2.24
4448 5219 7.408543 ACACACTTCCCTAGACTATGTTACTA 58.591 38.462 0.00 0.00 0.00 1.82
4449 5220 7.338957 ACACACTTCCCTAGACTATGTTACTAC 59.661 40.741 0.00 0.00 0.00 2.73
4450 5221 6.832900 ACACTTCCCTAGACTATGTTACTACC 59.167 42.308 0.00 0.00 0.00 3.18
4451 5222 7.061688 CACTTCCCTAGACTATGTTACTACCT 58.938 42.308 0.00 0.00 0.00 3.08
4452 5223 7.560626 CACTTCCCTAGACTATGTTACTACCTT 59.439 40.741 0.00 0.00 0.00 3.50
4453 5224 7.779326 ACTTCCCTAGACTATGTTACTACCTTC 59.221 40.741 0.00 0.00 0.00 3.46
4454 5225 7.217028 TCCCTAGACTATGTTACTACCTTCA 57.783 40.000 0.00 0.00 0.00 3.02
4455 5226 7.823635 TCCCTAGACTATGTTACTACCTTCAT 58.176 38.462 0.00 0.00 0.00 2.57
4456 5227 8.952602 TCCCTAGACTATGTTACTACCTTCATA 58.047 37.037 0.00 0.00 0.00 2.15
4457 5228 9.233649 CCCTAGACTATGTTACTACCTTCATAG 57.766 40.741 8.77 8.77 42.80 2.23
4460 5231 8.466617 AGACTATGTTACTACCTTCATAGTGG 57.533 38.462 17.43 0.00 46.89 4.00
4461 5232 8.280084 AGACTATGTTACTACCTTCATAGTGGA 58.720 37.037 17.43 0.00 46.89 4.02
4462 5233 9.080097 GACTATGTTACTACCTTCATAGTGGAT 57.920 37.037 17.43 0.00 46.89 3.41
4466 5237 9.656323 ATGTTACTACCTTCATAGTGGATAGAA 57.344 33.333 0.00 0.00 36.09 2.10
4467 5238 9.483489 TGTTACTACCTTCATAGTGGATAGAAA 57.517 33.333 0.00 0.00 36.09 2.52
4468 5239 9.747293 GTTACTACCTTCATAGTGGATAGAAAC 57.253 37.037 0.00 0.00 36.09 2.78
4469 5240 7.973048 ACTACCTTCATAGTGGATAGAAACA 57.027 36.000 0.00 0.00 34.02 2.83
4470 5241 8.554490 ACTACCTTCATAGTGGATAGAAACAT 57.446 34.615 0.00 0.00 34.02 2.71
4471 5242 8.643324 ACTACCTTCATAGTGGATAGAAACATC 58.357 37.037 0.00 0.00 34.02 3.06
4472 5243 7.682787 ACCTTCATAGTGGATAGAAACATCT 57.317 36.000 0.00 0.00 0.00 2.90
4473 5244 8.783660 ACCTTCATAGTGGATAGAAACATCTA 57.216 34.615 0.00 0.00 0.00 1.98
4474 5245 9.386122 ACCTTCATAGTGGATAGAAACATCTAT 57.614 33.333 0.00 0.00 35.78 1.98
4475 5246 9.650539 CCTTCATAGTGGATAGAAACATCTATG 57.349 37.037 3.22 0.00 36.42 2.23
4481 5252 8.540507 AGTGGATAGAAACATCTATGTAGTGT 57.459 34.615 3.22 0.00 40.80 3.55
4482 5253 8.634444 AGTGGATAGAAACATCTATGTAGTGTC 58.366 37.037 3.22 0.00 40.80 3.67
4483 5254 8.414003 GTGGATAGAAACATCTATGTAGTGTCA 58.586 37.037 3.22 0.00 40.80 3.58
4484 5255 9.147732 TGGATAGAAACATCTATGTAGTGTCAT 57.852 33.333 3.22 0.00 40.80 3.06
4485 5256 9.416794 GGATAGAAACATCTATGTAGTGTCATG 57.583 37.037 3.22 0.00 40.80 3.07
4486 5257 8.824159 ATAGAAACATCTATGTAGTGTCATGC 57.176 34.615 0.00 0.00 40.80 4.06
4487 5258 6.643388 AGAAACATCTATGTAGTGTCATGCA 58.357 36.000 0.00 0.00 40.80 3.96
4488 5259 7.105588 AGAAACATCTATGTAGTGTCATGCAA 58.894 34.615 0.00 0.00 40.80 4.08
4489 5260 6.668541 AACATCTATGTAGTGTCATGCAAC 57.331 37.500 0.00 0.00 40.80 4.17
4490 5261 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
4491 5262 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
4492 5263 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
4493 5264 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
4494 5265 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
4495 5266 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
4496 5267 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
4497 5268 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
4498 5269 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
4499 5270 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
4500 5271 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
4501 5272 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
4502 5273 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
4503 5274 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
4504 5275 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
4505 5276 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
4506 5277 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
4507 5278 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
4526 5297 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
4527 5298 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
4528 5299 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
4529 5300 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
4530 5301 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
4531 5302 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
4532 5303 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
4533 5304 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
4534 5305 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
4535 5306 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
4536 5307 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
4537 5308 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
4538 5309 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
4539 5310 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
4540 5311 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
4541 5312 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
4542 5313 1.800586 CTTGGAGTGTGTGATGTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
4543 5314 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
4544 5315 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.000 0.00 0.00 0.00 5.28
4545 5316 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
4546 5317 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
4547 5318 2.735134 GAGTGTGTGATGTTCCGGTAAC 59.265 50.000 0.00 5.56 38.67 2.50
4548 5319 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
4549 5320 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
4550 5321 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
4551 5322 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
4552 5323 3.930848 GTGTGATGTTCCGGTAACTTAGG 59.069 47.826 0.00 0.00 38.99 2.69
4553 5324 3.055675 TGTGATGTTCCGGTAACTTAGGG 60.056 47.826 0.00 0.00 38.99 3.53
4554 5325 2.502538 TGATGTTCCGGTAACTTAGGGG 59.497 50.000 0.00 0.00 38.99 4.79
4555 5326 2.028561 TGTTCCGGTAACTTAGGGGT 57.971 50.000 0.00 0.00 38.99 4.95
4556 5327 1.624813 TGTTCCGGTAACTTAGGGGTG 59.375 52.381 0.00 0.00 38.99 4.61
4557 5328 1.625315 GTTCCGGTAACTTAGGGGTGT 59.375 52.381 0.00 0.00 35.05 4.16
4558 5329 2.028561 TCCGGTAACTTAGGGGTGTT 57.971 50.000 0.00 0.00 0.00 3.32
4559 5330 2.337849 TCCGGTAACTTAGGGGTGTTT 58.662 47.619 0.00 0.00 0.00 2.83
4560 5331 2.038820 TCCGGTAACTTAGGGGTGTTTG 59.961 50.000 0.00 0.00 0.00 2.93
4561 5332 2.429478 CGGTAACTTAGGGGTGTTTGG 58.571 52.381 0.00 0.00 0.00 3.28
4562 5333 2.224597 CGGTAACTTAGGGGTGTTTGGT 60.225 50.000 0.00 0.00 0.00 3.67
4563 5334 3.748348 CGGTAACTTAGGGGTGTTTGGTT 60.748 47.826 0.00 0.00 0.00 3.67
4564 5335 3.822735 GGTAACTTAGGGGTGTTTGGTTC 59.177 47.826 0.00 0.00 0.00 3.62
4565 5336 3.673543 AACTTAGGGGTGTTTGGTTCA 57.326 42.857 0.00 0.00 0.00 3.18
4566 5337 3.223674 ACTTAGGGGTGTTTGGTTCAG 57.776 47.619 0.00 0.00 0.00 3.02
4567 5338 2.158519 ACTTAGGGGTGTTTGGTTCAGG 60.159 50.000 0.00 0.00 0.00 3.86
4568 5339 0.774908 TAGGGGTGTTTGGTTCAGGG 59.225 55.000 0.00 0.00 0.00 4.45
4569 5340 1.533033 GGGGTGTTTGGTTCAGGGG 60.533 63.158 0.00 0.00 0.00 4.79
4570 5341 2.207229 GGGTGTTTGGTTCAGGGGC 61.207 63.158 0.00 0.00 0.00 5.80
4571 5342 1.152546 GGTGTTTGGTTCAGGGGCT 60.153 57.895 0.00 0.00 0.00 5.19
4572 5343 0.759060 GGTGTTTGGTTCAGGGGCTT 60.759 55.000 0.00 0.00 0.00 4.35
4573 5344 1.119684 GTGTTTGGTTCAGGGGCTTT 58.880 50.000 0.00 0.00 0.00 3.51
4574 5345 1.484653 GTGTTTGGTTCAGGGGCTTTT 59.515 47.619 0.00 0.00 0.00 2.27
4575 5346 2.093181 GTGTTTGGTTCAGGGGCTTTTT 60.093 45.455 0.00 0.00 0.00 1.94
4576 5347 3.133183 GTGTTTGGTTCAGGGGCTTTTTA 59.867 43.478 0.00 0.00 0.00 1.52
4577 5348 3.386402 TGTTTGGTTCAGGGGCTTTTTAG 59.614 43.478 0.00 0.00 0.00 1.85
4578 5349 3.322191 TTGGTTCAGGGGCTTTTTAGT 57.678 42.857 0.00 0.00 0.00 2.24
4579 5350 2.871453 TGGTTCAGGGGCTTTTTAGTC 58.129 47.619 0.00 0.00 0.00 2.59
4580 5351 2.168496 GGTTCAGGGGCTTTTTAGTCC 58.832 52.381 0.00 0.00 0.00 3.85
4587 5358 2.712709 GGGCTTTTTAGTCCCAGAGAC 58.287 52.381 0.00 0.00 46.71 3.36
4599 5370 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
4600 5371 3.838903 TCCCAGAGACTAGAAAAAGTCCC 59.161 47.826 0.00 0.00 45.86 4.46
4601 5372 3.841255 CCCAGAGACTAGAAAAAGTCCCT 59.159 47.826 0.00 0.00 45.86 4.20
4602 5373 5.024118 CCCAGAGACTAGAAAAAGTCCCTA 58.976 45.833 0.00 0.00 45.86 3.53
4603 5374 5.484290 CCCAGAGACTAGAAAAAGTCCCTAA 59.516 44.000 0.00 0.00 45.86 2.69
4604 5375 6.013639 CCCAGAGACTAGAAAAAGTCCCTAAA 60.014 42.308 0.00 0.00 45.86 1.85
4605 5376 7.450903 CCAGAGACTAGAAAAAGTCCCTAAAA 58.549 38.462 0.00 0.00 45.86 1.52
4606 5377 7.937394 CCAGAGACTAGAAAAAGTCCCTAAAAA 59.063 37.037 0.00 0.00 45.86 1.94
4607 5378 8.994170 CAGAGACTAGAAAAAGTCCCTAAAAAG 58.006 37.037 0.00 0.00 45.86 2.27
4608 5379 8.715842 AGAGACTAGAAAAAGTCCCTAAAAAGT 58.284 33.333 0.00 0.00 45.86 2.66
4609 5380 8.905660 AGACTAGAAAAAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 45.86 3.01
4610 5381 7.937942 AGACTAGAAAAAGTCCCTAAAAAGTCC 59.062 37.037 0.00 0.00 45.86 3.85
4611 5382 7.002879 ACTAGAAAAAGTCCCTAAAAAGTCCC 58.997 38.462 0.00 0.00 0.00 4.46
4612 5383 6.027025 AGAAAAAGTCCCTAAAAAGTCCCT 57.973 37.500 0.00 0.00 0.00 4.20
4613 5384 7.157947 AGAAAAAGTCCCTAAAAAGTCCCTA 57.842 36.000 0.00 0.00 0.00 3.53
4614 5385 7.232188 AGAAAAAGTCCCTAAAAAGTCCCTAG 58.768 38.462 0.00 0.00 0.00 3.02
4615 5386 5.516059 AAAGTCCCTAAAAAGTCCCTAGG 57.484 43.478 0.06 0.06 33.30 3.02
4616 5387 4.431158 AGTCCCTAAAAAGTCCCTAGGA 57.569 45.455 11.48 0.00 35.17 2.94
4617 5388 4.771338 AGTCCCTAAAAAGTCCCTAGGAA 58.229 43.478 11.48 0.00 35.17 3.36
4618 5389 4.535294 AGTCCCTAAAAAGTCCCTAGGAAC 59.465 45.833 11.48 0.00 35.17 3.62
4619 5390 3.848377 TCCCTAAAAAGTCCCTAGGAACC 59.152 47.826 11.48 0.00 35.17 3.62
4620 5391 3.590182 CCCTAAAAAGTCCCTAGGAACCA 59.410 47.826 11.48 0.00 35.17 3.67
4621 5392 4.043686 CCCTAAAAAGTCCCTAGGAACCAA 59.956 45.833 11.48 0.00 35.17 3.67
4622 5393 5.458508 CCCTAAAAAGTCCCTAGGAACCAAA 60.459 44.000 11.48 0.00 35.17 3.28
4623 5394 5.475909 CCTAAAAAGTCCCTAGGAACCAAAC 59.524 44.000 11.48 0.00 35.17 2.93
4624 5395 2.853235 AAGTCCCTAGGAACCAAACG 57.147 50.000 11.48 0.00 31.38 3.60
4625 5396 0.981943 AGTCCCTAGGAACCAAACGG 59.018 55.000 11.48 0.00 31.38 4.44
4626 5397 0.035725 GTCCCTAGGAACCAAACGGG 60.036 60.000 11.48 0.00 44.81 5.28
4627 5398 0.178897 TCCCTAGGAACCAAACGGGA 60.179 55.000 11.48 0.00 41.15 5.14
4628 5399 0.252197 CCCTAGGAACCAAACGGGAG 59.748 60.000 11.48 0.00 41.15 4.30
4629 5400 0.252197 CCTAGGAACCAAACGGGAGG 59.748 60.000 1.05 0.00 41.15 4.30
4630 5401 1.272807 CTAGGAACCAAACGGGAGGA 58.727 55.000 0.00 0.00 41.15 3.71
4631 5402 1.626825 CTAGGAACCAAACGGGAGGAA 59.373 52.381 0.00 0.00 41.15 3.36
4632 5403 0.109913 AGGAACCAAACGGGAGGAAC 59.890 55.000 0.00 0.00 41.15 3.62
4634 5405 1.478105 GGAACCAAACGGGAGGAACTT 60.478 52.381 0.00 0.00 41.55 2.66
4635 5406 2.304092 GAACCAAACGGGAGGAACTTT 58.696 47.619 0.00 0.00 41.55 2.66
4636 5407 2.447408 ACCAAACGGGAGGAACTTTT 57.553 45.000 0.00 0.00 41.55 2.27
4637 5408 2.742348 ACCAAACGGGAGGAACTTTTT 58.258 42.857 0.00 0.00 41.55 1.94
4661 5432 9.901172 TTTTTACAAGGACTAGAAAAAGACTCT 57.099 29.630 0.00 0.00 0.00 3.24
4663 5434 9.978044 TTTACAAGGACTAGAAAAAGACTCTAC 57.022 33.333 0.00 0.00 0.00 2.59
4664 5435 7.842887 ACAAGGACTAGAAAAAGACTCTACT 57.157 36.000 0.00 0.00 0.00 2.57
4665 5436 8.937207 ACAAGGACTAGAAAAAGACTCTACTA 57.063 34.615 0.00 0.00 0.00 1.82
4666 5437 9.016438 ACAAGGACTAGAAAAAGACTCTACTAG 57.984 37.037 0.00 0.00 35.11 2.57
4667 5438 9.233649 CAAGGACTAGAAAAAGACTCTACTAGA 57.766 37.037 0.00 0.00 33.77 2.43
4668 5439 9.810870 AAGGACTAGAAAAAGACTCTACTAGAA 57.189 33.333 0.00 0.00 33.77 2.10
4669 5440 9.810870 AGGACTAGAAAAAGACTCTACTAGAAA 57.189 33.333 0.00 0.00 33.77 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.334946 GCAAGCTGCATTCCACGGA 61.335 57.895 1.02 0.00 44.26 4.69
6 7 2.202388 CGCAAGCTGCATTCCACG 60.202 61.111 1.02 0.00 45.36 4.94
131 132 2.820037 GTGTTAGGAGCAGCGGCC 60.820 66.667 4.82 0.00 42.56 6.13
161 162 0.764271 TGAACTGGACATGTCAGGCA 59.236 50.000 26.47 18.48 36.62 4.75
169 170 4.104383 ACATCCTTGTTGAACTGGACAT 57.896 40.909 11.48 2.69 29.55 3.06
205 207 1.025812 ATGCGTCTTACTAGCGCTCT 58.974 50.000 16.34 2.16 42.96 4.09
206 208 1.124462 CATGCGTCTTACTAGCGCTC 58.876 55.000 16.34 0.00 42.96 5.03
207 209 0.456221 ACATGCGTCTTACTAGCGCT 59.544 50.000 17.26 17.26 42.96 5.92
208 210 0.847035 GACATGCGTCTTACTAGCGC 59.153 55.000 0.00 0.00 42.89 5.92
209 211 1.065701 AGGACATGCGTCTTACTAGCG 59.934 52.381 0.00 0.00 42.21 4.26
210 212 2.464865 CAGGACATGCGTCTTACTAGC 58.535 52.381 0.00 0.00 42.21 3.42
211 213 2.799917 GCCAGGACATGCGTCTTACTAG 60.800 54.545 0.00 0.00 42.21 2.57
212 214 1.136305 GCCAGGACATGCGTCTTACTA 59.864 52.381 0.00 0.00 42.21 1.82
213 215 0.108138 GCCAGGACATGCGTCTTACT 60.108 55.000 0.00 0.00 42.21 2.24
214 216 1.421410 CGCCAGGACATGCGTCTTAC 61.421 60.000 0.00 0.00 45.43 2.34
248 250 1.402720 CGGCGGTACTCTCGGTAAAAA 60.403 52.381 0.00 0.00 31.56 1.94
266 268 1.205064 CAACTCAGCAAAGCGACGG 59.795 57.895 0.00 0.00 0.00 4.79
267 269 0.581529 TTCAACTCAGCAAAGCGACG 59.418 50.000 0.00 0.00 0.00 5.12
284 286 1.966451 CCACACAGCCCCGTTCTTC 60.966 63.158 0.00 0.00 0.00 2.87
326 328 5.008613 GCTTATTAAGGTGATCGGAATGCAA 59.991 40.000 5.61 0.00 0.00 4.08
351 358 2.975410 TATATACGACCCAGAACGCG 57.025 50.000 3.53 3.53 0.00 6.01
353 360 5.971792 CAGCATATATATACGACCCAGAACG 59.028 44.000 0.00 0.00 0.00 3.95
403 410 0.034337 TCAAGCCACGGACCAACTAC 59.966 55.000 0.00 0.00 0.00 2.73
404 411 0.981183 ATCAAGCCACGGACCAACTA 59.019 50.000 0.00 0.00 0.00 2.24
437 444 3.671928 GTGTCAGCTCAAAATCACAATGC 59.328 43.478 0.00 0.00 0.00 3.56
496 503 4.201812 ACAATAATGTCGCCATTTCTCACG 60.202 41.667 0.00 0.00 41.50 4.35
521 535 7.622672 GCAAGCAGATAACAAAAATGGACATTG 60.623 37.037 0.00 0.00 0.00 2.82
522 536 6.369615 GCAAGCAGATAACAAAAATGGACATT 59.630 34.615 0.00 0.00 0.00 2.71
523 537 5.870978 GCAAGCAGATAACAAAAATGGACAT 59.129 36.000 0.00 0.00 0.00 3.06
524 538 5.229423 GCAAGCAGATAACAAAAATGGACA 58.771 37.500 0.00 0.00 0.00 4.02
525 539 4.627035 GGCAAGCAGATAACAAAAATGGAC 59.373 41.667 0.00 0.00 0.00 4.02
526 540 4.527816 AGGCAAGCAGATAACAAAAATGGA 59.472 37.500 0.00 0.00 0.00 3.41
527 541 4.628333 CAGGCAAGCAGATAACAAAAATGG 59.372 41.667 0.00 0.00 0.00 3.16
539 553 0.914644 ATTAGGAGCAGGCAAGCAGA 59.085 50.000 4.78 0.00 36.85 4.26
551 565 7.967908 AGTACCCATTCTCACATAATTAGGAG 58.032 38.462 3.76 4.89 0.00 3.69
554 568 9.698309 CAGTAGTACCCATTCTCACATAATTAG 57.302 37.037 0.00 0.00 0.00 1.73
555 569 8.148351 GCAGTAGTACCCATTCTCACATAATTA 58.852 37.037 0.00 0.00 0.00 1.40
568 582 2.620627 GGCCAAAAGCAGTAGTACCCAT 60.621 50.000 0.00 0.00 46.50 4.00
570 584 1.004394 AGGCCAAAAGCAGTAGTACCC 59.996 52.381 5.01 0.00 46.50 3.69
590 607 1.406341 CGGAAAATTGCCTACCCGAGA 60.406 52.381 0.00 0.00 39.31 4.04
591 608 1.014352 CGGAAAATTGCCTACCCGAG 58.986 55.000 0.00 0.00 39.31 4.63
592 609 0.614294 TCGGAAAATTGCCTACCCGA 59.386 50.000 0.00 0.00 42.92 5.14
593 610 1.400494 CTTCGGAAAATTGCCTACCCG 59.600 52.381 0.00 0.00 38.41 5.28
611 629 4.390909 ACGTAAAATTCTCGGCGATTTCTT 59.609 37.500 11.27 3.37 0.00 2.52
618 636 3.547601 ACAAAACGTAAAATTCTCGGCG 58.452 40.909 0.00 0.00 0.00 6.46
632 650 7.323895 CCATCTACACGAGATAGATACAAAACG 59.676 40.741 0.00 0.00 43.52 3.60
643 662 6.097696 TGAATTCAACCCATCTACACGAGATA 59.902 38.462 5.45 0.00 43.52 1.98
659 678 0.523335 GGCGCACGGATGAATTCAAC 60.523 55.000 13.09 9.88 0.00 3.18
667 686 2.512286 ATCACAGGCGCACGGATG 60.512 61.111 10.83 1.70 0.00 3.51
676 695 1.795162 GCATTACAACGCATCACAGGC 60.795 52.381 0.00 0.00 0.00 4.85
706 725 7.063191 GCATGTAGTATTGCACTATCATCTCAG 59.937 40.741 0.00 0.00 41.77 3.35
726 745 6.254589 GCTGCCAAATTAAATTTACGCATGTA 59.745 34.615 0.00 0.00 36.63 2.29
727 746 5.063312 GCTGCCAAATTAAATTTACGCATGT 59.937 36.000 0.00 0.00 36.63 3.21
728 747 5.291614 AGCTGCCAAATTAAATTTACGCATG 59.708 36.000 0.00 0.00 36.63 4.06
813 1241 2.590575 CAACGTGGCAACCGGACT 60.591 61.111 9.46 0.00 35.02 3.85
817 1245 1.298041 GTTCACAACGTGGCAACCG 60.298 57.895 0.00 0.00 33.87 4.44
828 1256 2.646117 TAGCGGCGTGGTGTTCACAA 62.646 55.000 9.37 0.00 46.36 3.33
841 1269 4.849329 CTCGGTCGGTGTAGCGGC 62.849 72.222 3.51 1.17 40.61 6.53
886 1314 2.768344 GGGAAGAGATGGGCCGGA 60.768 66.667 5.05 0.00 0.00 5.14
887 1315 3.878667 GGGGAAGAGATGGGCCGG 61.879 72.222 0.00 0.00 0.00 6.13
888 1316 2.770048 AGGGGAAGAGATGGGCCG 60.770 66.667 0.00 0.00 0.00 6.13
889 1317 2.761465 CCAGGGGAAGAGATGGGCC 61.761 68.421 0.00 0.00 0.00 5.80
890 1318 2.922234 CCAGGGGAAGAGATGGGC 59.078 66.667 0.00 0.00 0.00 5.36
992 1448 2.725008 CGACCCTCATCTCGCCTC 59.275 66.667 0.00 0.00 0.00 4.70
993 1449 2.835431 CCGACCCTCATCTCGCCT 60.835 66.667 0.00 0.00 0.00 5.52
994 1450 4.593864 GCCGACCCTCATCTCGCC 62.594 72.222 0.00 0.00 0.00 5.54
995 1451 4.933064 CGCCGACCCTCATCTCGC 62.933 72.222 0.00 0.00 0.00 5.03
996 1452 3.471244 GACGCCGACCCTCATCTCG 62.471 68.421 0.00 0.00 0.00 4.04
997 1453 2.413765 GACGCCGACCCTCATCTC 59.586 66.667 0.00 0.00 0.00 2.75
1031 1487 0.319211 CTTGTCCGCGTAGAACACCA 60.319 55.000 4.92 0.00 0.00 4.17
1164 1620 4.890306 GAGGAGGGGGAGGGGAGC 62.890 77.778 0.00 0.00 0.00 4.70
1166 1622 3.036959 GAGAGGAGGGGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
1167 1623 4.179599 GGAGAGGAGGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
1201 1657 2.408835 GTTGATGCGCGAATGGGG 59.591 61.111 12.10 0.00 0.00 4.96
1394 1852 0.528249 CCAACACACCAGCAGCAAAC 60.528 55.000 0.00 0.00 0.00 2.93
1567 2025 5.399858 GTTCGCTCTCACTATAACACTGAA 58.600 41.667 0.00 0.00 0.00 3.02
1568 2026 4.142447 GGTTCGCTCTCACTATAACACTGA 60.142 45.833 0.00 0.00 0.00 3.41
1569 2027 4.106197 GGTTCGCTCTCACTATAACACTG 58.894 47.826 0.00 0.00 0.00 3.66
1570 2028 4.017808 AGGTTCGCTCTCACTATAACACT 58.982 43.478 0.00 0.00 0.00 3.55
1573 2031 3.552294 GCAAGGTTCGCTCTCACTATAAC 59.448 47.826 0.00 0.00 0.00 1.89
1574 2032 3.447586 AGCAAGGTTCGCTCTCACTATAA 59.552 43.478 0.00 0.00 33.35 0.98
1575 2033 3.024547 AGCAAGGTTCGCTCTCACTATA 58.975 45.455 0.00 0.00 33.35 1.31
1576 2034 1.827969 AGCAAGGTTCGCTCTCACTAT 59.172 47.619 0.00 0.00 33.35 2.12
1577 2035 1.257743 AGCAAGGTTCGCTCTCACTA 58.742 50.000 0.00 0.00 33.35 2.74
1578 2036 0.394565 AAGCAAGGTTCGCTCTCACT 59.605 50.000 0.00 0.00 39.29 3.41
1579 2037 1.230324 AAAGCAAGGTTCGCTCTCAC 58.770 50.000 0.00 0.00 39.29 3.51
1580 2038 1.603802 CAAAAGCAAGGTTCGCTCTCA 59.396 47.619 0.00 0.00 39.29 3.27
1625 2083 7.067494 GGGATGAAGTGTACTGATGCTATTTTT 59.933 37.037 0.00 0.00 0.00 1.94
1686 2144 6.925718 CCATTCATTCTATGAGAAAGTAGCGA 59.074 38.462 0.00 0.00 40.94 4.93
1775 2235 0.872021 ACGCTGCGACATTAGCTAGC 60.872 55.000 30.47 6.62 37.78 3.42
1783 2243 1.204062 CGAAACAACGCTGCGACAT 59.796 52.632 30.47 11.44 0.00 3.06
1860 2320 7.491372 CAGAAGGCAAGTAAATAGTACGATCAA 59.509 37.037 0.00 0.00 0.00 2.57
1916 2376 3.568538 GAAGCACCAGTAACTGCAAATG 58.431 45.455 0.00 0.00 35.73 2.32
1982 2442 1.416401 CCAATACCTCATAGGCACGGT 59.584 52.381 0.00 0.00 39.63 4.83
2230 2691 4.171754 GCAATTCAAAGGAGCATGAAGAC 58.828 43.478 0.00 0.00 38.80 3.01
2241 2702 7.124147 TCCTCCTATAAAAAGGCAATTCAAAGG 59.876 37.037 0.00 0.00 36.51 3.11
2279 2740 0.037447 GCTGGCCAGACTCCTTCTTT 59.963 55.000 37.21 0.00 28.96 2.52
2285 2746 1.965754 ATCGAAGCTGGCCAGACTCC 61.966 60.000 37.21 19.20 0.00 3.85
2934 3504 2.996621 GCATATCATAGGACAGCGGAAC 59.003 50.000 0.00 0.00 0.00 3.62
2997 3567 4.512944 CAGTAAGCAGGCATGGTATAACTG 59.487 45.833 19.27 19.27 36.66 3.16
3022 3592 3.932710 TGACAGCGTTATTTCACTCCATC 59.067 43.478 0.00 0.00 0.00 3.51
3031 3606 2.752903 GTGGGGATTGACAGCGTTATTT 59.247 45.455 0.00 0.00 0.00 1.40
3210 3785 0.911769 CTTCCCTGTGGTCATGGCTA 59.088 55.000 0.00 0.00 30.97 3.93
3521 4096 3.735029 GCCTGCTGTGTCTGCTGC 61.735 66.667 0.00 0.00 0.00 5.25
3528 4103 1.895707 GCTTCTGTGCCTGCTGTGT 60.896 57.895 0.00 0.00 0.00 3.72
3552 4127 1.295792 GACCGCTGTTGTTGTCTTCA 58.704 50.000 0.00 0.00 0.00 3.02
3556 4131 0.163788 CGATGACCGCTGTTGTTGTC 59.836 55.000 0.00 0.00 0.00 3.18
3581 4156 2.123897 GCTCTCGGCTCCTCCTCT 60.124 66.667 0.00 0.00 38.06 3.69
3587 4162 3.535962 CTCCTGGCTCTCGGCTCC 61.536 72.222 0.00 0.00 41.46 4.70
3702 4277 3.264897 CTGCCGCCGTGATGCTAC 61.265 66.667 0.00 0.00 0.00 3.58
3863 4438 1.214325 CCTACACATGACGGCGACA 59.786 57.895 16.62 15.80 0.00 4.35
3871 4446 1.204704 CGGAACAGAGCCTACACATGA 59.795 52.381 0.00 0.00 0.00 3.07
3896 4471 0.754957 CCTGGCAAGACAAACACCCA 60.755 55.000 0.00 0.00 0.00 4.51
3947 4522 1.477558 CCAACTGCTCAGGAACCAACT 60.478 52.381 1.66 0.00 0.00 3.16
3948 4523 0.954452 CCAACTGCTCAGGAACCAAC 59.046 55.000 1.66 0.00 0.00 3.77
3949 4524 0.178992 CCCAACTGCTCAGGAACCAA 60.179 55.000 1.66 0.00 0.00 3.67
3950 4525 1.059584 TCCCAACTGCTCAGGAACCA 61.060 55.000 1.66 0.00 0.00 3.67
4014 4593 2.128035 GCACGCTATACTTACAGCCAG 58.872 52.381 0.00 0.00 34.15 4.85
4015 4594 1.478916 TGCACGCTATACTTACAGCCA 59.521 47.619 0.00 0.00 34.15 4.75
4016 4595 2.218953 TGCACGCTATACTTACAGCC 57.781 50.000 0.00 0.00 34.15 4.85
4017 4596 3.604772 GCATTGCACGCTATACTTACAGC 60.605 47.826 3.15 0.00 0.00 4.40
4018 4597 3.555547 TGCATTGCACGCTATACTTACAG 59.444 43.478 7.38 0.00 31.71 2.74
4019 4598 3.526534 TGCATTGCACGCTATACTTACA 58.473 40.909 7.38 0.00 31.71 2.41
4035 4614 7.818930 ACCAAGATCGTTTCATAAAATTGCATT 59.181 29.630 0.00 0.00 0.00 3.56
4036 4615 7.322664 ACCAAGATCGTTTCATAAAATTGCAT 58.677 30.769 0.00 0.00 0.00 3.96
4037 4616 6.686630 ACCAAGATCGTTTCATAAAATTGCA 58.313 32.000 0.00 0.00 0.00 4.08
4038 4617 8.856490 ATACCAAGATCGTTTCATAAAATTGC 57.144 30.769 0.00 0.00 0.00 3.56
4080 4659 5.712152 AGTCAGGGTCATCAAATCAAAAC 57.288 39.130 0.00 0.00 0.00 2.43
4200 4951 3.066621 GGACAGCATTGTTCTTTGTGTGA 59.933 43.478 0.00 0.00 37.76 3.58
4266 5017 3.669536 AGAGTAAGCAGCCTGAAAGTTC 58.330 45.455 0.00 0.00 0.00 3.01
4277 5028 0.532573 TGCCTTCGGAGAGTAAGCAG 59.467 55.000 0.00 0.00 38.43 4.24
4289 5040 4.339247 ACATATCCCTTGATTTTGCCTTCG 59.661 41.667 0.00 0.00 32.18 3.79
4320 5091 1.069227 GTCGAAAGCGGCTTCAACATT 60.069 47.619 16.70 0.00 39.48 2.71
4337 5108 2.164624 ACCTTGAAGAGAATCCGAGTCG 59.835 50.000 5.29 5.29 33.66 4.18
4343 5114 5.946377 ACCAATTACACCTTGAAGAGAATCC 59.054 40.000 0.00 0.00 33.66 3.01
4385 5156 1.035139 CTTGCCCATTATGACCAGCC 58.965 55.000 0.00 0.00 0.00 4.85
4386 5157 2.057137 TCTTGCCCATTATGACCAGC 57.943 50.000 0.00 0.00 0.00 4.85
4387 5158 7.362401 GCTTATATTCTTGCCCATTATGACCAG 60.362 40.741 0.00 0.00 0.00 4.00
4388 5159 6.434028 GCTTATATTCTTGCCCATTATGACCA 59.566 38.462 0.00 0.00 0.00 4.02
4389 5160 6.660949 AGCTTATATTCTTGCCCATTATGACC 59.339 38.462 0.00 0.00 0.00 4.02
4390 5161 7.693969 AGCTTATATTCTTGCCCATTATGAC 57.306 36.000 0.00 0.00 0.00 3.06
4391 5162 8.605947 ACTAGCTTATATTCTTGCCCATTATGA 58.394 33.333 0.00 0.00 0.00 2.15
4392 5163 8.798859 ACTAGCTTATATTCTTGCCCATTATG 57.201 34.615 0.00 0.00 0.00 1.90
4394 5165 9.720769 GTTACTAGCTTATATTCTTGCCCATTA 57.279 33.333 0.00 0.00 0.00 1.90
4395 5166 8.440771 AGTTACTAGCTTATATTCTTGCCCATT 58.559 33.333 0.00 0.00 0.00 3.16
4396 5167 7.978925 AGTTACTAGCTTATATTCTTGCCCAT 58.021 34.615 0.00 0.00 0.00 4.00
4397 5168 7.374975 AGTTACTAGCTTATATTCTTGCCCA 57.625 36.000 0.00 0.00 0.00 5.36
4398 5169 9.205719 GTAAGTTACTAGCTTATATTCTTGCCC 57.794 37.037 5.75 0.00 32.01 5.36
4399 5170 9.760077 TGTAAGTTACTAGCTTATATTCTTGCC 57.240 33.333 14.00 0.00 32.01 4.52
4407 5178 8.689972 GGGAAGTGTGTAAGTTACTAGCTTATA 58.310 37.037 14.00 0.00 32.01 0.98
4408 5179 7.399478 AGGGAAGTGTGTAAGTTACTAGCTTAT 59.601 37.037 14.00 3.60 32.01 1.73
4409 5180 6.723052 AGGGAAGTGTGTAAGTTACTAGCTTA 59.277 38.462 14.00 0.00 0.00 3.09
4410 5181 5.543020 AGGGAAGTGTGTAAGTTACTAGCTT 59.457 40.000 14.00 13.25 0.00 3.74
4411 5182 5.085219 AGGGAAGTGTGTAAGTTACTAGCT 58.915 41.667 14.00 6.35 0.00 3.32
4412 5183 5.402997 AGGGAAGTGTGTAAGTTACTAGC 57.597 43.478 14.00 5.48 0.00 3.42
4413 5184 7.611079 AGTCTAGGGAAGTGTGTAAGTTACTAG 59.389 40.741 14.00 4.64 33.84 2.57
4414 5185 7.465116 AGTCTAGGGAAGTGTGTAAGTTACTA 58.535 38.462 14.00 1.06 0.00 1.82
4415 5186 6.313324 AGTCTAGGGAAGTGTGTAAGTTACT 58.687 40.000 14.00 0.00 0.00 2.24
4416 5187 6.587206 AGTCTAGGGAAGTGTGTAAGTTAC 57.413 41.667 6.06 6.06 0.00 2.50
4417 5188 7.892241 ACATAGTCTAGGGAAGTGTGTAAGTTA 59.108 37.037 0.00 0.00 0.00 2.24
4418 5189 6.724905 ACATAGTCTAGGGAAGTGTGTAAGTT 59.275 38.462 0.00 0.00 0.00 2.66
4419 5190 6.254522 ACATAGTCTAGGGAAGTGTGTAAGT 58.745 40.000 0.00 0.00 0.00 2.24
4420 5191 6.777213 ACATAGTCTAGGGAAGTGTGTAAG 57.223 41.667 0.00 0.00 0.00 2.34
4421 5192 7.892241 AGTAACATAGTCTAGGGAAGTGTGTAA 59.108 37.037 0.00 0.00 0.00 2.41
4422 5193 7.408543 AGTAACATAGTCTAGGGAAGTGTGTA 58.591 38.462 0.00 0.00 0.00 2.90
4423 5194 6.254522 AGTAACATAGTCTAGGGAAGTGTGT 58.745 40.000 0.00 0.00 0.00 3.72
4424 5195 6.777213 AGTAACATAGTCTAGGGAAGTGTG 57.223 41.667 0.00 0.00 0.00 3.82
4425 5196 6.832900 GGTAGTAACATAGTCTAGGGAAGTGT 59.167 42.308 0.00 0.00 0.00 3.55
4426 5197 7.061688 AGGTAGTAACATAGTCTAGGGAAGTG 58.938 42.308 0.00 0.00 0.00 3.16
4427 5198 7.223472 AGGTAGTAACATAGTCTAGGGAAGT 57.777 40.000 0.00 0.00 0.00 3.01
4428 5199 7.778853 TGAAGGTAGTAACATAGTCTAGGGAAG 59.221 40.741 0.00 0.00 0.00 3.46
4429 5200 7.645942 TGAAGGTAGTAACATAGTCTAGGGAA 58.354 38.462 0.00 0.00 0.00 3.97
4430 5201 7.217028 TGAAGGTAGTAACATAGTCTAGGGA 57.783 40.000 0.00 0.00 0.00 4.20
4431 5202 9.233649 CTATGAAGGTAGTAACATAGTCTAGGG 57.766 40.741 0.00 0.00 38.06 3.53
4432 5203 9.796180 ACTATGAAGGTAGTAACATAGTCTAGG 57.204 37.037 0.00 0.00 46.61 3.02
4434 5205 9.570468 CCACTATGAAGGTAGTAACATAGTCTA 57.430 37.037 13.37 0.00 46.61 2.59
4435 5206 8.280084 TCCACTATGAAGGTAGTAACATAGTCT 58.720 37.037 13.37 0.00 46.61 3.24
4436 5207 8.461249 TCCACTATGAAGGTAGTAACATAGTC 57.539 38.462 13.37 0.00 46.61 2.59
4440 5211 9.656323 TTCTATCCACTATGAAGGTAGTAACAT 57.344 33.333 0.00 0.00 33.29 2.71
4441 5212 9.483489 TTTCTATCCACTATGAAGGTAGTAACA 57.517 33.333 0.00 0.00 33.29 2.41
4442 5213 9.747293 GTTTCTATCCACTATGAAGGTAGTAAC 57.253 37.037 0.00 0.00 33.29 2.50
4443 5214 9.483489 TGTTTCTATCCACTATGAAGGTAGTAA 57.517 33.333 0.00 0.00 33.29 2.24
4444 5215 9.656323 ATGTTTCTATCCACTATGAAGGTAGTA 57.344 33.333 0.00 0.00 33.29 1.82
4445 5216 7.973048 TGTTTCTATCCACTATGAAGGTAGT 57.027 36.000 0.00 0.00 35.34 2.73
4446 5217 8.865090 AGATGTTTCTATCCACTATGAAGGTAG 58.135 37.037 0.00 0.00 0.00 3.18
4447 5218 8.783660 AGATGTTTCTATCCACTATGAAGGTA 57.216 34.615 0.00 0.00 0.00 3.08
4448 5219 7.682787 AGATGTTTCTATCCACTATGAAGGT 57.317 36.000 0.00 0.00 0.00 3.50
4449 5220 9.650539 CATAGATGTTTCTATCCACTATGAAGG 57.349 37.037 0.00 0.00 42.17 3.46
4455 5226 9.642343 ACACTACATAGATGTTTCTATCCACTA 57.358 33.333 0.00 0.00 42.17 2.74
4456 5227 8.540507 ACACTACATAGATGTTTCTATCCACT 57.459 34.615 0.00 0.00 42.17 4.00
4457 5228 8.414003 TGACACTACATAGATGTTTCTATCCAC 58.586 37.037 0.00 0.00 42.17 4.02
4458 5229 8.533569 TGACACTACATAGATGTTTCTATCCA 57.466 34.615 0.00 0.00 42.17 3.41
4459 5230 9.416794 CATGACACTACATAGATGTTTCTATCC 57.583 37.037 0.00 0.00 42.17 2.59
4460 5231 8.920665 GCATGACACTACATAGATGTTTCTATC 58.079 37.037 0.00 0.00 42.17 2.08
4461 5232 8.424133 TGCATGACACTACATAGATGTTTCTAT 58.576 33.333 0.00 0.00 44.39 1.98
4462 5233 7.781056 TGCATGACACTACATAGATGTTTCTA 58.219 34.615 0.00 0.00 41.97 2.10
4463 5234 6.643388 TGCATGACACTACATAGATGTTTCT 58.357 36.000 0.00 0.00 41.97 2.52
4464 5235 6.908870 TGCATGACACTACATAGATGTTTC 57.091 37.500 0.00 0.00 41.97 2.78
4465 5236 6.183360 CGTTGCATGACACTACATAGATGTTT 60.183 38.462 0.00 0.00 41.97 2.83
4466 5237 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
4467 5238 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
4468 5239 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
4469 5240 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
4470 5241 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
4471 5242 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
4472 5243 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
4473 5244 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
4474 5245 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
4475 5246 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
4476 5247 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
4477 5248 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
4478 5249 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
4479 5250 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
4480 5251 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
4481 5252 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
4500 5271 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
4501 5272 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
4502 5273 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
4503 5274 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
4504 5275 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
4505 5276 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
4506 5277 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
4507 5278 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
4508 5279 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
4509 5280 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
4510 5281 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
4511 5282 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
4512 5283 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
4513 5284 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
4514 5285 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
4515 5286 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
4516 5287 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
4517 5288 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
4518 5289 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
4519 5290 3.882888 GGAACATCACACACTCCAAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
4520 5291 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
4521 5292 2.547855 CGGAACATCACACACTCCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
4522 5293 1.800586 CGGAACATCACACACTCCAAG 59.199 52.381 0.00 0.00 0.00 3.61
4523 5294 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
4524 5295 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
4525 5296 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
4526 5297 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
4527 5298 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
4528 5299 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
4529 5300 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
4530 5301 3.930848 CCTAAGTTACCGGAACATCACAC 59.069 47.826 9.46 0.00 40.86 3.82
4531 5302 3.055675 CCCTAAGTTACCGGAACATCACA 60.056 47.826 9.46 0.00 40.86 3.58
4532 5303 3.528532 CCCTAAGTTACCGGAACATCAC 58.471 50.000 9.46 0.00 40.86 3.06
4533 5304 2.502538 CCCCTAAGTTACCGGAACATCA 59.497 50.000 9.46 0.00 40.86 3.07
4534 5305 2.502947 ACCCCTAAGTTACCGGAACATC 59.497 50.000 9.46 0.00 40.86 3.06
4535 5306 2.237893 CACCCCTAAGTTACCGGAACAT 59.762 50.000 9.46 4.03 40.86 2.71
4536 5307 1.624813 CACCCCTAAGTTACCGGAACA 59.375 52.381 9.46 0.00 40.86 3.18
4537 5308 1.625315 ACACCCCTAAGTTACCGGAAC 59.375 52.381 9.46 8.67 38.44 3.62
4538 5309 2.028561 ACACCCCTAAGTTACCGGAA 57.971 50.000 9.46 0.00 0.00 4.30
4539 5310 2.028561 AACACCCCTAAGTTACCGGA 57.971 50.000 9.46 0.00 0.00 5.14
4540 5311 2.429478 CAAACACCCCTAAGTTACCGG 58.571 52.381 0.00 0.00 0.00 5.28
4541 5312 2.224597 ACCAAACACCCCTAAGTTACCG 60.225 50.000 0.00 0.00 0.00 4.02
4542 5313 3.513909 ACCAAACACCCCTAAGTTACC 57.486 47.619 0.00 0.00 0.00 2.85
4543 5314 4.463070 TGAACCAAACACCCCTAAGTTAC 58.537 43.478 0.00 0.00 0.00 2.50
4544 5315 4.446600 CCTGAACCAAACACCCCTAAGTTA 60.447 45.833 0.00 0.00 0.00 2.24
4545 5316 3.562182 CTGAACCAAACACCCCTAAGTT 58.438 45.455 0.00 0.00 0.00 2.66
4546 5317 2.158519 CCTGAACCAAACACCCCTAAGT 60.159 50.000 0.00 0.00 0.00 2.24
4547 5318 2.514803 CCTGAACCAAACACCCCTAAG 58.485 52.381 0.00 0.00 0.00 2.18
4548 5319 1.146152 CCCTGAACCAAACACCCCTAA 59.854 52.381 0.00 0.00 0.00 2.69
4549 5320 0.774908 CCCTGAACCAAACACCCCTA 59.225 55.000 0.00 0.00 0.00 3.53
4550 5321 1.541672 CCCTGAACCAAACACCCCT 59.458 57.895 0.00 0.00 0.00 4.79
4551 5322 1.533033 CCCCTGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
4552 5323 2.207229 GCCCCTGAACCAAACACCC 61.207 63.158 0.00 0.00 0.00 4.61
4553 5324 0.759060 AAGCCCCTGAACCAAACACC 60.759 55.000 0.00 0.00 0.00 4.16
4554 5325 1.119684 AAAGCCCCTGAACCAAACAC 58.880 50.000 0.00 0.00 0.00 3.32
4555 5326 1.872773 AAAAGCCCCTGAACCAAACA 58.127 45.000 0.00 0.00 0.00 2.83
4556 5327 3.386726 ACTAAAAAGCCCCTGAACCAAAC 59.613 43.478 0.00 0.00 0.00 2.93
4557 5328 3.639561 GACTAAAAAGCCCCTGAACCAAA 59.360 43.478 0.00 0.00 0.00 3.28
4558 5329 3.227614 GACTAAAAAGCCCCTGAACCAA 58.772 45.455 0.00 0.00 0.00 3.67
4559 5330 2.490168 GGACTAAAAAGCCCCTGAACCA 60.490 50.000 0.00 0.00 0.00 3.67
4560 5331 2.168496 GGACTAAAAAGCCCCTGAACC 58.832 52.381 0.00 0.00 0.00 3.62
4561 5332 2.168496 GGGACTAAAAAGCCCCTGAAC 58.832 52.381 0.00 0.00 35.76 3.18
4562 5333 1.783979 TGGGACTAAAAAGCCCCTGAA 59.216 47.619 0.00 0.00 41.31 3.02
4563 5334 1.354368 CTGGGACTAAAAAGCCCCTGA 59.646 52.381 0.00 0.00 41.31 3.86
4564 5335 1.354368 TCTGGGACTAAAAAGCCCCTG 59.646 52.381 0.00 0.00 41.31 4.45
4565 5336 1.636003 CTCTGGGACTAAAAAGCCCCT 59.364 52.381 0.00 0.00 41.31 4.79
4566 5337 1.633945 TCTCTGGGACTAAAAAGCCCC 59.366 52.381 0.00 0.00 41.31 5.80
4567 5338 2.712709 GTCTCTGGGACTAAAAAGCCC 58.287 52.381 0.00 0.00 41.46 5.19
4577 5348 4.322877 GGGACTTTTTCTAGTCTCTGGGAC 60.323 50.000 0.00 0.00 41.50 4.46
4578 5349 3.838903 GGGACTTTTTCTAGTCTCTGGGA 59.161 47.826 0.00 0.00 41.50 4.37
4579 5350 4.209307 GGGACTTTTTCTAGTCTCTGGG 57.791 50.000 0.00 0.00 41.50 4.45
4583 5354 8.905660 ACTTTTTAGGGACTTTTTCTAGTCTC 57.094 34.615 0.00 0.00 44.42 3.36
4584 5355 7.937942 GGACTTTTTAGGGACTTTTTCTAGTCT 59.062 37.037 0.00 0.00 43.26 3.24
4585 5356 7.174599 GGGACTTTTTAGGGACTTTTTCTAGTC 59.825 40.741 0.00 0.00 43.05 2.59
4586 5357 7.002879 GGGACTTTTTAGGGACTTTTTCTAGT 58.997 38.462 0.00 0.00 41.75 2.57
4587 5358 7.232188 AGGGACTTTTTAGGGACTTTTTCTAG 58.768 38.462 0.00 0.00 34.75 2.43
4588 5359 7.157947 AGGGACTTTTTAGGGACTTTTTCTA 57.842 36.000 0.00 0.00 34.75 2.10
4589 5360 6.027025 AGGGACTTTTTAGGGACTTTTTCT 57.973 37.500 0.00 0.00 34.75 2.52
4590 5361 6.433404 CCTAGGGACTTTTTAGGGACTTTTTC 59.567 42.308 0.00 0.00 39.49 2.29
4591 5362 6.103649 TCCTAGGGACTTTTTAGGGACTTTTT 59.896 38.462 9.46 0.00 39.49 1.94
4592 5363 5.613973 TCCTAGGGACTTTTTAGGGACTTTT 59.386 40.000 9.46 0.00 39.49 2.27
4593 5364 5.167921 TCCTAGGGACTTTTTAGGGACTTT 58.832 41.667 9.46 0.00 39.49 2.66
4594 5365 4.771338 TCCTAGGGACTTTTTAGGGACTT 58.229 43.478 9.46 0.00 39.49 3.01
4595 5366 4.431158 TCCTAGGGACTTTTTAGGGACT 57.569 45.455 9.46 0.00 41.75 3.85
4596 5367 4.324099 GGTTCCTAGGGACTTTTTAGGGAC 60.324 50.000 20.08 0.45 40.79 4.46
4597 5368 3.848377 GGTTCCTAGGGACTTTTTAGGGA 59.152 47.826 20.08 0.00 41.75 4.20
4598 5369 3.590182 TGGTTCCTAGGGACTTTTTAGGG 59.410 47.826 20.08 0.00 41.75 3.53
4599 5370 4.921644 TGGTTCCTAGGGACTTTTTAGG 57.078 45.455 20.08 0.00 41.75 2.69
4600 5371 5.180680 CGTTTGGTTCCTAGGGACTTTTTAG 59.819 44.000 20.08 4.22 41.75 1.85
4601 5372 5.065235 CGTTTGGTTCCTAGGGACTTTTTA 58.935 41.667 20.08 0.00 41.75 1.52
4602 5373 3.887110 CGTTTGGTTCCTAGGGACTTTTT 59.113 43.478 20.08 0.00 41.75 1.94
4603 5374 3.483421 CGTTTGGTTCCTAGGGACTTTT 58.517 45.455 20.08 0.00 41.75 2.27
4604 5375 2.224695 CCGTTTGGTTCCTAGGGACTTT 60.225 50.000 20.08 0.00 41.75 2.66
4605 5376 1.350019 CCGTTTGGTTCCTAGGGACTT 59.650 52.381 20.08 0.00 41.75 3.01
4606 5377 0.981943 CCGTTTGGTTCCTAGGGACT 59.018 55.000 20.08 0.00 46.37 3.85
4607 5378 0.035725 CCCGTTTGGTTCCTAGGGAC 60.036 60.000 12.35 12.35 41.26 4.46
4608 5379 0.178897 TCCCGTTTGGTTCCTAGGGA 60.179 55.000 9.46 0.00 44.85 4.20
4609 5380 0.252197 CTCCCGTTTGGTTCCTAGGG 59.748 60.000 9.46 0.00 40.16 3.53
4610 5381 0.252197 CCTCCCGTTTGGTTCCTAGG 59.748 60.000 0.82 0.82 34.77 3.02
4611 5382 1.272807 TCCTCCCGTTTGGTTCCTAG 58.727 55.000 0.00 0.00 34.77 3.02
4612 5383 1.348696 GTTCCTCCCGTTTGGTTCCTA 59.651 52.381 0.00 0.00 34.77 2.94
4613 5384 0.109913 GTTCCTCCCGTTTGGTTCCT 59.890 55.000 0.00 0.00 34.77 3.36
4614 5385 0.109913 AGTTCCTCCCGTTTGGTTCC 59.890 55.000 0.00 0.00 34.77 3.62
4615 5386 1.977056 AAGTTCCTCCCGTTTGGTTC 58.023 50.000 0.00 0.00 34.77 3.62
4616 5387 2.447408 AAAGTTCCTCCCGTTTGGTT 57.553 45.000 0.00 0.00 34.77 3.67
4617 5388 2.447408 AAAAGTTCCTCCCGTTTGGT 57.553 45.000 0.00 0.00 34.77 3.67
4635 5406 9.901172 AGAGTCTTTTTCTAGTCCTTGTAAAAA 57.099 29.630 0.00 0.00 0.00 1.94
4637 5408 9.978044 GTAGAGTCTTTTTCTAGTCCTTGTAAA 57.022 33.333 0.00 0.00 0.00 2.01
4638 5409 9.364653 AGTAGAGTCTTTTTCTAGTCCTTGTAA 57.635 33.333 0.00 0.00 0.00 2.41
4639 5410 8.937207 AGTAGAGTCTTTTTCTAGTCCTTGTA 57.063 34.615 0.00 0.00 0.00 2.41
4640 5411 7.842887 AGTAGAGTCTTTTTCTAGTCCTTGT 57.157 36.000 0.00 0.00 0.00 3.16
4641 5412 9.233649 TCTAGTAGAGTCTTTTTCTAGTCCTTG 57.766 37.037 0.00 0.00 33.84 3.61
4642 5413 9.810870 TTCTAGTAGAGTCTTTTTCTAGTCCTT 57.189 33.333 0.00 0.00 33.84 3.36
4643 5414 9.810870 TTTCTAGTAGAGTCTTTTTCTAGTCCT 57.189 33.333 0.00 0.00 33.84 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.