Multiple sequence alignment - TraesCS5D01G304500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G304500 chr5D 100.000 3329 0 0 1 3329 399634252 399630924 0.000000e+00 6148.0
1 TraesCS5D01G304500 chr5A 90.511 2719 164 48 331 3004 505208493 505205824 0.000000e+00 3506.0
2 TraesCS5D01G304500 chr5A 93.603 297 16 2 3034 3329 505205823 505205529 1.100000e-119 440.0
3 TraesCS5D01G304500 chr5A 91.250 320 8 10 34 333 505208947 505208628 5.140000e-113 418.0
4 TraesCS5D01G304500 chr5A 83.544 316 25 8 751 1039 505290162 505289847 1.520000e-68 270.0
5 TraesCS5D01G304500 chr5B 91.298 2011 110 24 752 2740 479778948 479776981 0.000000e+00 2684.0
6 TraesCS5D01G304500 chr3A 94.872 39 1 1 3286 3323 540971290 540971252 3.590000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G304500 chr5D 399630924 399634252 3328 True 6148.000000 6148 100.000 1 3329 1 chr5D.!!$R1 3328
1 TraesCS5D01G304500 chr5A 505205529 505208947 3418 True 1454.666667 3506 91.788 34 3329 3 chr5A.!!$R2 3295
2 TraesCS5D01G304500 chr5B 479776981 479778948 1967 True 2684.000000 2684 91.298 752 2740 1 chr5B.!!$R1 1988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.035152 ATCGCCACAATGCAGAGGAA 60.035 50.0 0.00 0.00 0.00 3.36 F
255 264 0.035915 TTCGCAATTGGTCCGATGGA 60.036 50.0 7.72 0.00 0.00 3.41 F
256 265 0.180171 TCGCAATTGGTCCGATGGAT 59.820 50.0 7.72 0.00 32.73 3.41 F
837 1008 0.255890 GATTTACCTGGCTGGCAGGA 59.744 55.0 44.95 29.25 42.27 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2221 0.170561 CGAAGTAGGACGACACCAGG 59.829 60.000 0.00 0.00 0.00 4.45 R
2206 2432 3.423154 CTCTTTCGTGGCCACCGC 61.423 66.667 29.95 5.97 0.00 5.68 R
2265 2491 0.661020 CGTAATCACCGAAATGCCCC 59.339 55.000 0.00 0.00 0.00 5.80 R
2690 2921 0.250858 CCCATGTGCTGACTTGGACA 60.251 55.000 9.86 0.00 46.09 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.458592 GTTAGTCATCGCCACAATGC 57.541 50.000 0.00 0.00 0.00 3.56
20 21 1.737236 GTTAGTCATCGCCACAATGCA 59.263 47.619 0.00 0.00 0.00 3.96
21 22 1.655484 TAGTCATCGCCACAATGCAG 58.345 50.000 0.00 0.00 0.00 4.41
22 23 0.036105 AGTCATCGCCACAATGCAGA 60.036 50.000 0.00 0.00 0.00 4.26
23 24 0.376152 GTCATCGCCACAATGCAGAG 59.624 55.000 0.00 0.00 0.00 3.35
24 25 0.745486 TCATCGCCACAATGCAGAGG 60.745 55.000 0.00 0.00 0.00 3.69
25 26 0.745486 CATCGCCACAATGCAGAGGA 60.745 55.000 0.00 0.00 0.00 3.71
26 27 0.035152 ATCGCCACAATGCAGAGGAA 60.035 50.000 0.00 0.00 0.00 3.36
27 28 0.250684 TCGCCACAATGCAGAGGAAA 60.251 50.000 0.00 0.00 0.00 3.13
28 29 0.813184 CGCCACAATGCAGAGGAAAT 59.187 50.000 0.00 0.00 0.00 2.17
29 30 1.202222 CGCCACAATGCAGAGGAAATC 60.202 52.381 0.00 0.00 0.00 2.17
30 31 1.135721 GCCACAATGCAGAGGAAATCC 59.864 52.381 0.00 0.00 0.00 3.01
31 32 1.402968 CCACAATGCAGAGGAAATCCG 59.597 52.381 0.00 0.00 42.08 4.18
32 33 2.086869 CACAATGCAGAGGAAATCCGT 58.913 47.619 0.00 0.00 42.08 4.69
76 77 1.739562 CAGAGCGGAGGCAGTGAAC 60.740 63.158 0.00 0.00 43.41 3.18
115 116 2.787249 CAGCGAGCCCATTCGTTG 59.213 61.111 0.00 0.00 43.42 4.10
209 215 2.847234 AAGCCCCAGTGGACGACA 60.847 61.111 11.95 0.00 35.39 4.35
214 220 1.292223 CCCAGTGGACGACAACGAT 59.708 57.895 11.95 0.00 42.66 3.73
231 240 6.053650 ACAACGATGATGATGATGATTGAGT 58.946 36.000 0.00 0.00 0.00 3.41
251 260 0.170116 GCATTTCGCAATTGGTCCGA 59.830 50.000 7.72 5.06 41.79 4.55
252 261 1.202290 GCATTTCGCAATTGGTCCGAT 60.202 47.619 7.72 0.00 41.79 4.18
253 262 2.453080 CATTTCGCAATTGGTCCGATG 58.547 47.619 7.72 0.98 0.00 3.84
254 263 0.808125 TTTCGCAATTGGTCCGATGG 59.192 50.000 7.72 0.00 0.00 3.51
255 264 0.035915 TTCGCAATTGGTCCGATGGA 60.036 50.000 7.72 0.00 0.00 3.41
256 265 0.180171 TCGCAATTGGTCCGATGGAT 59.820 50.000 7.72 0.00 32.73 3.41
259 268 2.547855 CGCAATTGGTCCGATGGATCTA 60.548 50.000 7.72 0.00 33.22 1.98
261 270 3.495100 GCAATTGGTCCGATGGATCTACT 60.495 47.826 7.72 0.00 33.22 2.57
262 271 4.310769 CAATTGGTCCGATGGATCTACTC 58.689 47.826 0.00 0.00 33.22 2.59
263 272 1.605753 TGGTCCGATGGATCTACTCG 58.394 55.000 0.00 0.00 33.22 4.18
322 343 3.452755 TGCGAGAAGAAGTCAGTCAAA 57.547 42.857 0.00 0.00 0.00 2.69
378 536 5.457140 TGAAGAAAATTGGCGATAACACAC 58.543 37.500 0.00 0.00 0.00 3.82
392 550 5.557514 CGATAACACACACGCTAGTTTGTTT 60.558 40.000 12.90 4.54 39.05 2.83
399 557 6.305877 CACACACGCTAGTTTGTTTGTTAAAA 59.694 34.615 0.00 0.00 39.05 1.52
401 559 7.542824 ACACACGCTAGTTTGTTTGTTAAAATT 59.457 29.630 0.00 0.00 37.99 1.82
491 649 0.683179 ATTTTGGAACCGGGCTAGCC 60.683 55.000 26.55 26.55 0.00 3.93
501 659 3.346870 GGCTAGCCCCCTTTCCAT 58.653 61.111 24.19 0.00 0.00 3.41
546 704 1.238439 GTCTTACCAGCAGCAGCAAA 58.762 50.000 3.17 0.00 45.49 3.68
547 705 1.815003 GTCTTACCAGCAGCAGCAAAT 59.185 47.619 3.17 0.00 45.49 2.32
566 724 2.127528 GGGAGGGGAAAGGGGAGT 59.872 66.667 0.00 0.00 0.00 3.85
567 725 2.309504 GGGAGGGGAAAGGGGAGTG 61.310 68.421 0.00 0.00 0.00 3.51
618 776 4.378770 GCATCAAGCAATTCGTCAAGAAGA 60.379 41.667 0.00 0.00 42.23 2.87
690 848 4.148825 ACGGACGCCATCTCCTGC 62.149 66.667 0.00 0.00 0.00 4.85
693 851 4.554036 GACGCCATCTCCTGCCCC 62.554 72.222 0.00 0.00 0.00 5.80
718 876 1.099879 GTGCTGCTGATGATGGGGAC 61.100 60.000 0.00 0.00 0.00 4.46
723 881 1.097547 GCTGATGATGGGGACGTTGG 61.098 60.000 0.00 0.00 0.00 3.77
822 993 7.609532 CACTCACTCCAGAATTAGAAAGGATTT 59.390 37.037 0.00 0.00 43.98 2.17
837 1008 0.255890 GATTTACCTGGCTGGCAGGA 59.744 55.000 44.95 29.25 42.27 3.86
838 1009 0.257039 ATTTACCTGGCTGGCAGGAG 59.743 55.000 44.95 26.44 42.27 3.69
839 1010 1.852157 TTTACCTGGCTGGCAGGAGG 61.852 60.000 44.95 27.15 42.27 4.30
941 1137 1.983119 ATCCCACCACCATAGTGCCG 61.983 60.000 0.00 0.00 43.09 5.69
972 1174 1.797537 GTTGACGCAATGCCGCTTC 60.798 57.895 0.00 0.00 0.00 3.86
973 1175 2.976840 TTGACGCAATGCCGCTTCC 61.977 57.895 0.00 0.00 29.48 3.46
974 1176 4.179579 GACGCAATGCCGCTTCCC 62.180 66.667 0.00 0.00 0.00 3.97
1028 1233 0.533755 CGGCCCAGGATTCATCTGTC 60.534 60.000 0.00 0.00 0.00 3.51
1036 1241 2.623416 AGGATTCATCTGTCGACGCATA 59.377 45.455 11.62 0.00 0.00 3.14
1037 1242 3.256879 AGGATTCATCTGTCGACGCATAT 59.743 43.478 11.62 0.00 0.00 1.78
1038 1243 4.459337 AGGATTCATCTGTCGACGCATATA 59.541 41.667 11.62 0.00 0.00 0.86
1039 1244 5.126222 AGGATTCATCTGTCGACGCATATAT 59.874 40.000 11.62 0.40 0.00 0.86
1040 1245 5.457148 GGATTCATCTGTCGACGCATATATC 59.543 44.000 11.62 9.51 0.00 1.63
1047 1252 5.588648 TCTGTCGACGCATATATCATATCCA 59.411 40.000 11.62 0.00 0.00 3.41
1060 1265 5.557576 ATCATATCCATCCATACATCGGG 57.442 43.478 0.00 0.00 0.00 5.14
1071 1279 1.043116 TACATCGGGGCTCTGTCCTG 61.043 60.000 0.00 0.00 34.49 3.86
1080 1288 0.452585 GCTCTGTCCTGTCCTACGTC 59.547 60.000 0.00 0.00 0.00 4.34
1081 1289 1.951424 GCTCTGTCCTGTCCTACGTCT 60.951 57.143 0.00 0.00 0.00 4.18
1082 1290 2.680221 GCTCTGTCCTGTCCTACGTCTA 60.680 54.545 0.00 0.00 0.00 2.59
1116 1324 1.194218 TGATCGAGGTGCTTGATCCA 58.806 50.000 0.01 0.00 45.81 3.41
1737 1963 0.684479 ACCTGCTCGACCTGCTCATA 60.684 55.000 0.00 0.00 0.00 2.15
2025 2251 1.658686 CCTACTTCGAGCTCTGCCGT 61.659 60.000 12.85 6.14 0.00 5.68
2026 2252 0.524392 CTACTTCGAGCTCTGCCGTG 60.524 60.000 12.85 0.00 0.00 4.94
2265 2491 2.202837 GGTACCGGCGTTAGGCAG 60.203 66.667 6.01 0.00 46.16 4.85
2404 2634 9.958180 TTTCAGAGGACAGATTATTCACATTTA 57.042 29.630 0.00 0.00 0.00 1.40
2450 2681 5.106712 CGAAAGCTAAGCAGTGGTGATTAAA 60.107 40.000 0.00 0.00 34.20 1.52
2451 2682 5.886960 AAGCTAAGCAGTGGTGATTAAAG 57.113 39.130 0.00 0.00 34.20 1.85
2452 2683 5.165961 AGCTAAGCAGTGGTGATTAAAGA 57.834 39.130 0.00 0.00 34.20 2.52
2454 2685 4.938226 GCTAAGCAGTGGTGATTAAAGACT 59.062 41.667 0.00 0.00 34.20 3.24
2455 2686 6.070767 AGCTAAGCAGTGGTGATTAAAGACTA 60.071 38.462 0.00 0.00 34.20 2.59
2457 2688 5.091261 AGCAGTGGTGATTAAAGACTAGG 57.909 43.478 0.00 0.00 0.00 3.02
2458 2689 4.777896 AGCAGTGGTGATTAAAGACTAGGA 59.222 41.667 0.00 0.00 0.00 2.94
2459 2690 5.105146 AGCAGTGGTGATTAAAGACTAGGAG 60.105 44.000 0.00 0.00 0.00 3.69
2460 2691 5.665459 CAGTGGTGATTAAAGACTAGGAGG 58.335 45.833 0.00 0.00 0.00 4.30
2487 2718 7.279313 GCAAATAGGTCAATCATGAAGCAATTT 59.721 33.333 0.00 0.00 37.30 1.82
2518 2749 1.095600 TGTGTTTGCTGCACGGTTAA 58.904 45.000 0.00 0.00 39.53 2.01
2582 2813 8.102676 ACCCTTTAGCATATTTTCATTTTGCTT 58.897 29.630 0.65 0.00 43.08 3.91
2665 2896 0.911769 ACATCGCCCTGGAGATCAAA 59.088 50.000 0.00 0.00 32.49 2.69
2672 2903 3.947834 CGCCCTGGAGATCAAACTATTTT 59.052 43.478 0.00 0.00 0.00 1.82
2706 2937 0.767375 ACCTGTCCAAGTCAGCACAT 59.233 50.000 0.00 0.00 0.00 3.21
2711 2942 1.604308 CCAAGTCAGCACATGGGCA 60.604 57.895 24.51 0.00 37.68 5.36
2712 2943 0.968901 CCAAGTCAGCACATGGGCAT 60.969 55.000 24.51 4.16 37.68 4.40
2716 2947 0.313043 GTCAGCACATGGGCATATGC 59.687 55.000 24.51 19.79 41.29 3.14
2740 2971 0.322816 ATTGGCTACTGTGGCACCTG 60.323 55.000 18.00 10.58 42.23 4.00
2742 2973 1.200760 TGGCTACTGTGGCACCTGAT 61.201 55.000 18.00 0.05 37.59 2.90
2744 2975 1.202580 GGCTACTGTGGCACCTGATAG 60.203 57.143 18.00 11.83 0.00 2.08
2749 2980 0.982852 TGTGGCACCTGATAGGAGGG 60.983 60.000 16.26 0.00 37.67 4.30
2755 2986 0.570218 ACCTGATAGGAGGGCCTCAT 59.430 55.000 33.27 29.54 45.54 2.90
2757 2988 0.894141 CTGATAGGAGGGCCTCATCG 59.106 60.000 33.27 19.16 45.54 3.84
2758 2989 0.482887 TGATAGGAGGGCCTCATCGA 59.517 55.000 33.27 14.58 45.54 3.59
2768 2999 2.208431 GGCCTCATCGATCAGTTTCAG 58.792 52.381 0.00 0.00 0.00 3.02
2777 3008 2.778659 GATCAGTTTCAGCGTCAATGC 58.221 47.619 0.00 0.00 0.00 3.56
2778 3009 0.874390 TCAGTTTCAGCGTCAATGCC 59.126 50.000 0.00 0.00 34.65 4.40
2787 3018 4.450976 TCAGCGTCAATGCCTGTTTATAT 58.549 39.130 0.00 0.00 34.65 0.86
2788 3019 4.273235 TCAGCGTCAATGCCTGTTTATATG 59.727 41.667 0.00 0.00 34.65 1.78
2801 3032 6.929606 GCCTGTTTATATGGAGTTTAGATCGT 59.070 38.462 0.00 0.00 0.00 3.73
2810 3041 4.142227 TGGAGTTTAGATCGTTCTGTAGCC 60.142 45.833 6.25 2.65 33.17 3.93
2829 3060 2.967397 CGCGTCCCAGTCTTGGTA 59.033 61.111 0.00 0.00 43.40 3.25
2848 3079 9.199982 TCTTGGTACTGAGAAGTAAAAATTACG 57.800 33.333 0.00 0.00 0.00 3.18
2856 3087 8.665643 TGAGAAGTAAAAATTACGGAAAGTGA 57.334 30.769 0.00 0.00 0.00 3.41
2869 3100 3.242413 CGGAAAGTGATACCAATTCGCTG 60.242 47.826 0.00 0.00 34.33 5.18
2870 3101 3.065371 GGAAAGTGATACCAATTCGCTGG 59.935 47.826 0.00 0.00 42.68 4.85
2875 3106 2.169561 TGATACCAATTCGCTGGCACTA 59.830 45.455 0.00 0.00 40.45 2.74
2878 3109 1.376609 CCAATTCGCTGGCACTACCC 61.377 60.000 0.00 0.00 37.83 3.69
2887 3118 1.956477 CTGGCACTACCCCAATTATGC 59.044 52.381 0.00 0.00 37.83 3.14
2888 3119 1.286257 TGGCACTACCCCAATTATGCA 59.714 47.619 0.00 0.00 37.83 3.96
2891 3122 2.100749 GCACTACCCCAATTATGCAACC 59.899 50.000 0.00 0.00 33.27 3.77
2935 3166 5.786264 AGAGAGTCGAAGAAAACCTTGTA 57.214 39.130 0.00 0.00 39.69 2.41
2939 3170 7.715686 AGAGAGTCGAAGAAAACCTTGTAAAAT 59.284 33.333 0.00 0.00 39.69 1.82
2942 3173 5.918576 GTCGAAGAAAACCTTGTAAAATGGG 59.081 40.000 0.00 0.00 39.69 4.00
2944 3175 5.918576 CGAAGAAAACCTTGTAAAATGGGTC 59.081 40.000 0.00 0.00 34.68 4.46
2957 3188 4.432980 AAATGGGTCGGAAGGGTAATAG 57.567 45.455 0.00 0.00 0.00 1.73
2961 3192 2.773661 GGGTCGGAAGGGTAATAGGAAA 59.226 50.000 0.00 0.00 0.00 3.13
2966 3197 5.884232 GTCGGAAGGGTAATAGGAAATTTGT 59.116 40.000 0.00 0.00 0.00 2.83
2972 3203 6.548321 AGGGTAATAGGAAATTTGTGTGTGA 58.452 36.000 0.00 0.00 0.00 3.58
3015 3246 9.825972 AACAACATAAATAGTCATTTCTTCACG 57.174 29.630 0.00 0.00 35.88 4.35
3016 3247 8.999431 ACAACATAAATAGTCATTTCTTCACGT 58.001 29.630 0.00 0.00 35.88 4.49
3017 3248 9.265938 CAACATAAATAGTCATTTCTTCACGTG 57.734 33.333 9.94 9.94 35.88 4.49
3018 3249 8.547967 ACATAAATAGTCATTTCTTCACGTGT 57.452 30.769 16.51 0.00 35.88 4.49
3019 3250 8.999431 ACATAAATAGTCATTTCTTCACGTGTT 58.001 29.630 16.51 0.00 35.88 3.32
3020 3251 9.478019 CATAAATAGTCATTTCTTCACGTGTTC 57.522 33.333 16.51 0.00 35.88 3.18
3021 3252 7.490962 AAATAGTCATTTCTTCACGTGTTCA 57.509 32.000 16.51 0.00 27.60 3.18
3022 3253 4.795970 AGTCATTTCTTCACGTGTTCAC 57.204 40.909 16.51 2.69 0.00 3.18
3023 3254 4.442706 AGTCATTTCTTCACGTGTTCACT 58.557 39.130 16.51 4.87 0.00 3.41
3024 3255 4.271049 AGTCATTTCTTCACGTGTTCACTG 59.729 41.667 16.51 7.79 0.00 3.66
3025 3256 3.559655 TCATTTCTTCACGTGTTCACTGG 59.440 43.478 16.51 2.46 0.00 4.00
3026 3257 1.295792 TTCTTCACGTGTTCACTGGC 58.704 50.000 16.51 0.00 0.00 4.85
3027 3258 0.531974 TCTTCACGTGTTCACTGGCC 60.532 55.000 16.51 0.00 0.00 5.36
3028 3259 0.813610 CTTCACGTGTTCACTGGCCA 60.814 55.000 16.51 4.71 0.00 5.36
3029 3260 0.813610 TTCACGTGTTCACTGGCCAG 60.814 55.000 31.60 31.60 0.00 4.85
3030 3261 2.111043 ACGTGTTCACTGGCCAGG 59.889 61.111 35.42 23.77 0.00 4.45
3031 3262 2.111043 CGTGTTCACTGGCCAGGT 59.889 61.111 35.42 18.85 0.00 4.00
3032 3263 1.961277 CGTGTTCACTGGCCAGGTC 60.961 63.158 35.42 21.39 0.00 3.85
3048 3279 0.249911 GGTCTGTTTGGCGAGTGACT 60.250 55.000 0.00 0.00 0.00 3.41
3072 3303 2.614057 GTGCTCTTTGGGGTTATCATCG 59.386 50.000 0.00 0.00 0.00 3.84
3090 3321 2.409975 TCGTTTCCTAGCAACTTTCGG 58.590 47.619 0.00 0.00 0.00 4.30
3097 3328 2.159517 CCTAGCAACTTTCGGAACATGC 60.160 50.000 11.52 11.52 0.00 4.06
3142 3373 9.830975 TTGAGAGAATGATTATAAATTCGGTGA 57.169 29.630 4.86 0.00 37.77 4.02
3152 3383 3.915437 AAATTCGGTGATGTTGTCCAC 57.085 42.857 0.00 0.00 0.00 4.02
3194 3425 6.019479 GTGTATGGCAAAACGAACATTTTTCA 60.019 34.615 0.00 0.00 29.17 2.69
3230 3461 1.200020 CGGGAACATGGCAGTTTCTTC 59.800 52.381 9.88 3.90 0.00 2.87
3256 3487 3.683365 ATCCTGGCAATTTTCACAACC 57.317 42.857 0.00 0.00 0.00 3.77
3264 3495 7.040548 CCTGGCAATTTTCACAACCAAATTATT 60.041 33.333 0.00 0.00 32.47 1.40
3266 3497 8.133627 TGGCAATTTTCACAACCAAATTATTTG 58.866 29.630 10.46 10.46 40.32 2.32
3267 3498 8.134261 GGCAATTTTCACAACCAAATTATTTGT 58.866 29.630 15.40 2.68 38.98 2.83
3268 3499 9.513727 GCAATTTTCACAACCAAATTATTTGTT 57.486 25.926 15.40 7.93 38.98 2.83
3272 3503 9.892130 TTTTCACAACCAAATTATTTGTTACCT 57.108 25.926 15.40 0.00 38.98 3.08
3277 3508 9.320352 ACAACCAAATTATTTGTTACCTGTTTC 57.680 29.630 15.40 0.00 38.98 2.78
3289 3520 6.503524 TGTTACCTGTTTCTGAAGAATTTGC 58.496 36.000 0.00 0.00 33.54 3.68
3299 3530 7.636259 TTCTGAAGAATTTGCCATAAAAACG 57.364 32.000 0.00 0.00 0.00 3.60
3312 3543 1.927895 AAAAACGTTCGCAAATGCCA 58.072 40.000 0.00 0.00 37.91 4.92
3316 3548 1.226660 CGTTCGCAAATGCCATCCC 60.227 57.895 0.00 0.00 37.91 3.85
3326 3558 0.194587 ATGCCATCCCCCTAGCTAGT 59.805 55.000 19.31 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.737236 TGCATTGTGGCGATGACTAAC 59.263 47.619 0.85 0.00 36.28 2.34
1 2 2.009051 CTGCATTGTGGCGATGACTAA 58.991 47.619 0.00 0.00 36.28 2.24
2 3 1.206849 TCTGCATTGTGGCGATGACTA 59.793 47.619 0.00 0.00 36.28 2.59
3 4 0.036105 TCTGCATTGTGGCGATGACT 60.036 50.000 0.00 0.00 36.28 3.41
4 5 0.376152 CTCTGCATTGTGGCGATGAC 59.624 55.000 0.00 0.00 36.28 3.06
5 6 0.745486 CCTCTGCATTGTGGCGATGA 60.745 55.000 0.00 0.00 36.28 2.92
6 7 0.745486 TCCTCTGCATTGTGGCGATG 60.745 55.000 0.00 0.00 36.28 3.84
7 8 0.035152 TTCCTCTGCATTGTGGCGAT 60.035 50.000 0.00 0.00 36.28 4.58
8 9 0.250684 TTTCCTCTGCATTGTGGCGA 60.251 50.000 0.00 0.00 36.28 5.54
9 10 0.813184 ATTTCCTCTGCATTGTGGCG 59.187 50.000 0.00 0.00 36.28 5.69
10 11 1.135721 GGATTTCCTCTGCATTGTGGC 59.864 52.381 0.00 0.00 0.00 5.01
11 12 1.402968 CGGATTTCCTCTGCATTGTGG 59.597 52.381 0.00 0.00 0.00 4.17
12 13 2.086869 ACGGATTTCCTCTGCATTGTG 58.913 47.619 0.00 0.00 33.07 3.33
13 14 2.496899 ACGGATTTCCTCTGCATTGT 57.503 45.000 0.00 0.00 33.07 2.71
14 15 5.163622 ACAATAACGGATTTCCTCTGCATTG 60.164 40.000 0.00 0.00 39.56 2.82
15 16 4.949856 ACAATAACGGATTTCCTCTGCATT 59.050 37.500 0.00 0.00 33.07 3.56
16 17 4.526970 ACAATAACGGATTTCCTCTGCAT 58.473 39.130 0.00 0.00 33.07 3.96
17 18 3.950397 ACAATAACGGATTTCCTCTGCA 58.050 40.909 0.00 0.00 33.07 4.41
18 19 5.116882 ACTACAATAACGGATTTCCTCTGC 58.883 41.667 0.00 0.00 33.07 4.26
19 20 8.195436 TCTAACTACAATAACGGATTTCCTCTG 58.805 37.037 0.00 0.00 36.23 3.35
20 21 8.302515 TCTAACTACAATAACGGATTTCCTCT 57.697 34.615 0.00 0.00 0.00 3.69
21 22 9.194271 GATCTAACTACAATAACGGATTTCCTC 57.806 37.037 0.00 0.00 0.00 3.71
22 23 8.701895 TGATCTAACTACAATAACGGATTTCCT 58.298 33.333 0.00 0.00 0.00 3.36
23 24 8.882415 TGATCTAACTACAATAACGGATTTCC 57.118 34.615 0.00 0.00 0.00 3.13
25 26 9.832445 ACATGATCTAACTACAATAACGGATTT 57.168 29.630 0.00 0.00 0.00 2.17
26 27 9.261180 CACATGATCTAACTACAATAACGGATT 57.739 33.333 0.00 0.00 0.00 3.01
27 28 8.638873 TCACATGATCTAACTACAATAACGGAT 58.361 33.333 0.00 0.00 0.00 4.18
28 29 8.002984 TCACATGATCTAACTACAATAACGGA 57.997 34.615 0.00 0.00 0.00 4.69
29 30 8.818141 ATCACATGATCTAACTACAATAACGG 57.182 34.615 0.00 0.00 0.00 4.44
76 77 3.120060 GCCTTGTGCATCTTCAAGTACAG 60.120 47.826 12.28 0.95 39.25 2.74
102 103 2.867429 CATTTCACAACGAATGGGCTC 58.133 47.619 0.00 0.00 32.32 4.70
115 116 1.397945 CCGTACACACGTGCATTTCAC 60.398 52.381 17.22 4.46 46.96 3.18
182 188 2.173519 CACTGGGGCTTGATCAATTGT 58.826 47.619 8.96 0.00 0.00 2.71
209 215 5.049612 GCACTCAATCATCATCATCATCGTT 60.050 40.000 0.00 0.00 0.00 3.85
214 220 6.512741 CGAAATGCACTCAATCATCATCATCA 60.513 38.462 0.00 0.00 0.00 3.07
251 260 2.041976 CCGGTGCGAGTAGATCCAT 58.958 57.895 0.00 0.00 0.00 3.41
252 261 2.782222 GCCGGTGCGAGTAGATCCA 61.782 63.158 1.90 0.00 0.00 3.41
253 262 2.027751 GCCGGTGCGAGTAGATCC 59.972 66.667 1.90 0.00 0.00 3.36
254 263 2.027751 GGCCGGTGCGAGTAGATC 59.972 66.667 1.90 0.00 38.85 2.75
255 264 3.900892 CGGCCGGTGCGAGTAGAT 61.901 66.667 20.10 0.00 38.85 1.98
347 505 3.056891 CGCCAATTTTCTTCAAGGCCTAA 60.057 43.478 5.16 0.00 38.90 2.69
348 506 2.491693 CGCCAATTTTCTTCAAGGCCTA 59.508 45.455 5.16 0.00 38.90 3.93
349 507 1.273327 CGCCAATTTTCTTCAAGGCCT 59.727 47.619 0.00 0.00 38.90 5.19
350 508 1.272212 TCGCCAATTTTCTTCAAGGCC 59.728 47.619 0.00 0.00 38.90 5.19
399 557 8.450578 TGTTAGCTAGCTGCAACAATAATAAT 57.549 30.769 27.68 0.00 45.94 1.28
401 559 7.498900 ACATGTTAGCTAGCTGCAACAATAATA 59.501 33.333 28.12 12.66 45.94 0.98
491 649 1.870064 ATGCAAGGAATGGAAAGGGG 58.130 50.000 0.00 0.00 30.96 4.79
501 659 1.405105 GCATTTCCGCTATGCAAGGAA 59.595 47.619 10.85 10.85 45.93 3.36
522 680 1.216710 GCTGCTGGTAAGACGCTCT 59.783 57.895 0.00 0.00 0.00 4.09
546 704 2.287975 CCCCTTTCCCCTCCCCAT 60.288 66.667 0.00 0.00 0.00 4.00
547 705 3.558124 TCCCCTTTCCCCTCCCCA 61.558 66.667 0.00 0.00 0.00 4.96
566 724 4.776322 CCGAGATGCAACCCGCCA 62.776 66.667 0.00 0.00 41.33 5.69
618 776 3.667282 CCCGACTCCGTGTCACGT 61.667 66.667 23.01 5.64 45.60 4.49
690 848 2.369257 ATCAGCAGCACGATACGGGG 62.369 60.000 0.00 0.00 0.00 5.73
693 851 1.454653 CATCATCAGCAGCACGATACG 59.545 52.381 0.00 0.00 0.00 3.06
718 876 1.069636 GTTTCAAGCAGAGCTCCAACG 60.070 52.381 10.93 0.00 38.25 4.10
723 881 2.727298 GCGATTGTTTCAAGCAGAGCTC 60.727 50.000 5.27 5.27 38.25 4.09
838 1009 3.757248 AATGGCCGACGATCTGCCC 62.757 63.158 14.42 0.00 44.84 5.36
839 1010 1.776034 GAAATGGCCGACGATCTGCC 61.776 60.000 11.55 11.55 45.53 4.85
840 1011 1.643832 GAAATGGCCGACGATCTGC 59.356 57.895 0.00 0.00 0.00 4.26
845 1016 2.582436 GAGGGAAATGGCCGACGA 59.418 61.111 0.00 0.00 0.00 4.20
895 1086 1.976474 GGGGATGGAAGCACGCAAA 60.976 57.895 0.00 0.00 0.00 3.68
1028 1233 5.772521 TGGATGGATATGATATATGCGTCG 58.227 41.667 13.04 0.00 33.73 5.12
1036 1241 6.214208 CCCCGATGTATGGATGGATATGATAT 59.786 42.308 0.00 0.00 0.00 1.63
1037 1242 5.543790 CCCCGATGTATGGATGGATATGATA 59.456 44.000 0.00 0.00 0.00 2.15
1038 1243 4.349048 CCCCGATGTATGGATGGATATGAT 59.651 45.833 0.00 0.00 0.00 2.45
1039 1244 3.711190 CCCCGATGTATGGATGGATATGA 59.289 47.826 0.00 0.00 0.00 2.15
1040 1245 3.745480 GCCCCGATGTATGGATGGATATG 60.745 52.174 0.00 0.00 0.00 1.78
1047 1252 0.979665 CAGAGCCCCGATGTATGGAT 59.020 55.000 0.00 0.00 0.00 3.41
1060 1265 0.966370 ACGTAGGACAGGACAGAGCC 60.966 60.000 0.00 0.00 0.00 4.70
1087 1295 4.257376 CTCGATCAAGCACGCGCG 62.257 66.667 30.96 30.96 45.49 6.86
1088 1296 3.918220 CCTCGATCAAGCACGCGC 61.918 66.667 5.73 0.00 38.99 6.86
1089 1297 2.507102 ACCTCGATCAAGCACGCG 60.507 61.111 3.53 3.53 0.00 6.01
1090 1298 3.084579 CACCTCGATCAAGCACGC 58.915 61.111 0.00 0.00 0.00 5.34
1091 1299 1.016130 AAGCACCTCGATCAAGCACG 61.016 55.000 0.00 0.00 0.00 5.34
1092 1300 0.445436 CAAGCACCTCGATCAAGCAC 59.555 55.000 0.00 0.00 0.00 4.40
1093 1301 0.321346 TCAAGCACCTCGATCAAGCA 59.679 50.000 0.00 0.00 0.00 3.91
1094 1302 1.596727 GATCAAGCACCTCGATCAAGC 59.403 52.381 0.00 0.00 36.41 4.01
1095 1303 2.208431 GGATCAAGCACCTCGATCAAG 58.792 52.381 0.00 0.00 37.81 3.02
1096 1304 1.554617 TGGATCAAGCACCTCGATCAA 59.445 47.619 0.00 0.00 37.81 2.57
1097 1305 1.134699 GTGGATCAAGCACCTCGATCA 60.135 52.381 0.00 0.00 37.81 2.92
1098 1306 1.576356 GTGGATCAAGCACCTCGATC 58.424 55.000 0.00 0.00 35.79 3.69
1099 1307 0.179000 GGTGGATCAAGCACCTCGAT 59.821 55.000 11.24 0.00 36.16 3.59
1100 1308 1.596934 GGTGGATCAAGCACCTCGA 59.403 57.895 11.24 0.00 36.16 4.04
1101 1309 1.811266 CGGTGGATCAAGCACCTCG 60.811 63.158 15.11 2.66 36.88 4.63
1102 1310 0.179000 ATCGGTGGATCAAGCACCTC 59.821 55.000 15.11 0.00 36.88 3.85
1103 1311 0.179000 GATCGGTGGATCAAGCACCT 59.821 55.000 15.11 0.86 46.81 4.00
1672 1889 4.838486 GCGCGTCTCCTCGTCCTG 62.838 72.222 8.43 0.00 0.00 3.86
1995 2221 0.170561 CGAAGTAGGACGACACCAGG 59.829 60.000 0.00 0.00 0.00 4.45
2206 2432 3.423154 CTCTTTCGTGGCCACCGC 61.423 66.667 29.95 5.97 0.00 5.68
2265 2491 0.661020 CGTAATCACCGAAATGCCCC 59.339 55.000 0.00 0.00 0.00 5.80
2338 2564 7.872483 ACAAAAACTCATTCTTTCACAAGTTGT 59.128 29.630 1.64 1.64 0.00 3.32
2377 2605 8.503458 AATGTGAATAATCTGTCCTCTGAAAG 57.497 34.615 0.00 0.00 0.00 2.62
2404 2634 9.757227 TTTCGATTTGTTTCTAACCATCAAATT 57.243 25.926 0.00 0.00 38.34 1.82
2450 2681 3.310193 GACCTATTTGCCCTCCTAGTCT 58.690 50.000 0.00 0.00 0.00 3.24
2451 2682 3.039011 TGACCTATTTGCCCTCCTAGTC 58.961 50.000 0.00 0.00 0.00 2.59
2452 2683 3.130734 TGACCTATTTGCCCTCCTAGT 57.869 47.619 0.00 0.00 0.00 2.57
2454 2685 4.044308 TGATTGACCTATTTGCCCTCCTA 58.956 43.478 0.00 0.00 0.00 2.94
2455 2686 2.852449 TGATTGACCTATTTGCCCTCCT 59.148 45.455 0.00 0.00 0.00 3.69
2457 2688 4.464008 TCATGATTGACCTATTTGCCCTC 58.536 43.478 0.00 0.00 0.00 4.30
2458 2689 4.524802 TCATGATTGACCTATTTGCCCT 57.475 40.909 0.00 0.00 0.00 5.19
2459 2690 4.500375 GCTTCATGATTGACCTATTTGCCC 60.500 45.833 0.00 0.00 0.00 5.36
2460 2691 4.098349 TGCTTCATGATTGACCTATTTGCC 59.902 41.667 0.00 0.00 0.00 4.52
2487 2718 4.733230 GCAGCAAACACATGTACTCACAAA 60.733 41.667 0.00 0.00 38.42 2.83
2536 2767 3.381590 GGTGATTGGTTAGGGAATGCTTC 59.618 47.826 0.00 0.00 0.00 3.86
2582 2813 6.524933 CGCATTTTCAAACCGTTGATACATAA 59.475 34.615 0.00 0.00 43.29 1.90
2657 2888 5.022021 CGGTCGCAAAAATAGTTTGATCTC 58.978 41.667 3.07 0.00 0.00 2.75
2665 2896 1.084289 GGCTCGGTCGCAAAAATAGT 58.916 50.000 0.00 0.00 0.00 2.12
2690 2921 0.250858 CCCATGTGCTGACTTGGACA 60.251 55.000 9.86 0.00 46.09 4.02
2695 2926 2.304092 CATATGCCCATGTGCTGACTT 58.696 47.619 0.86 0.00 0.00 3.01
2706 2937 1.174078 CCAATCAGCGCATATGCCCA 61.174 55.000 21.77 3.68 37.91 5.36
2711 2942 2.224378 ACAGTAGCCAATCAGCGCATAT 60.224 45.455 11.47 0.00 38.01 1.78
2712 2943 1.138859 ACAGTAGCCAATCAGCGCATA 59.861 47.619 11.47 0.00 38.01 3.14
2716 2947 1.709147 GCCACAGTAGCCAATCAGCG 61.709 60.000 0.00 0.00 38.01 5.18
2719 2950 0.322456 GGTGCCACAGTAGCCAATCA 60.322 55.000 0.00 0.00 0.00 2.57
2740 2971 1.754226 GATCGATGAGGCCCTCCTATC 59.246 57.143 8.62 4.64 44.46 2.08
2742 2973 0.482887 TGATCGATGAGGCCCTCCTA 59.517 55.000 8.62 0.00 44.46 2.94
2744 2975 1.118356 ACTGATCGATGAGGCCCTCC 61.118 60.000 16.48 0.00 0.00 4.30
2749 2980 1.596727 GCTGAAACTGATCGATGAGGC 59.403 52.381 16.48 5.63 0.00 4.70
2752 2983 2.094752 TGACGCTGAAACTGATCGATGA 60.095 45.455 0.54 0.00 0.00 2.92
2755 2986 2.432206 TTGACGCTGAAACTGATCGA 57.568 45.000 0.00 0.00 0.00 3.59
2757 2988 2.476854 GGCATTGACGCTGAAACTGATC 60.477 50.000 0.00 0.00 0.00 2.92
2758 2989 1.470098 GGCATTGACGCTGAAACTGAT 59.530 47.619 0.00 0.00 0.00 2.90
2768 2999 3.563808 TCCATATAAACAGGCATTGACGC 59.436 43.478 0.00 0.00 0.00 5.19
2777 3008 8.888579 AACGATCTAAACTCCATATAAACAGG 57.111 34.615 0.00 0.00 0.00 4.00
2778 3009 9.751542 AGAACGATCTAAACTCCATATAAACAG 57.248 33.333 0.00 0.00 32.88 3.16
2787 3018 4.142227 GGCTACAGAACGATCTAAACTCCA 60.142 45.833 0.00 0.00 33.50 3.86
2788 3019 4.361420 GGCTACAGAACGATCTAAACTCC 58.639 47.826 0.00 0.00 33.50 3.85
2801 3032 4.789075 GGACGCGCGGCTACAGAA 62.789 66.667 37.12 0.00 0.00 3.02
2819 3050 8.608844 ATTTTTACTTCTCAGTACCAAGACTG 57.391 34.615 0.00 0.00 46.90 3.51
2829 3060 8.557029 CACTTTCCGTAATTTTTACTTCTCAGT 58.443 33.333 0.00 0.00 36.99 3.41
2834 3065 9.764870 GGTATCACTTTCCGTAATTTTTACTTC 57.235 33.333 0.00 0.00 0.00 3.01
2836 3067 8.851541 TGGTATCACTTTCCGTAATTTTTACT 57.148 30.769 0.00 0.00 0.00 2.24
2848 3079 3.065371 CCAGCGAATTGGTATCACTTTCC 59.935 47.826 0.00 0.00 33.38 3.13
2853 3084 1.064060 GTGCCAGCGAATTGGTATCAC 59.936 52.381 0.00 0.00 40.49 3.06
2856 3087 2.561569 GTAGTGCCAGCGAATTGGTAT 58.438 47.619 0.00 0.00 40.49 2.73
2869 3100 2.065899 TGCATAATTGGGGTAGTGCC 57.934 50.000 0.00 0.00 0.00 5.01
2870 3101 2.100749 GGTTGCATAATTGGGGTAGTGC 59.899 50.000 0.00 0.00 0.00 4.40
2875 3106 3.055240 CACATTGGTTGCATAATTGGGGT 60.055 43.478 0.00 0.00 0.00 4.95
2878 3109 3.597255 TGCACATTGGTTGCATAATTGG 58.403 40.909 0.00 0.00 33.24 3.16
2887 3118 4.545610 ACGAGTTAATTGCACATTGGTTG 58.454 39.130 0.00 0.00 0.00 3.77
2888 3119 4.846779 ACGAGTTAATTGCACATTGGTT 57.153 36.364 0.00 0.00 0.00 3.67
2891 3122 8.015087 TCTCTTAAACGAGTTAATTGCACATTG 58.985 33.333 0.00 0.00 31.22 2.82
2935 3166 3.750501 ATTACCCTTCCGACCCATTTT 57.249 42.857 0.00 0.00 0.00 1.82
2939 3170 1.291637 TCCTATTACCCTTCCGACCCA 59.708 52.381 0.00 0.00 0.00 4.51
2942 3173 5.884232 ACAAATTTCCTATTACCCTTCCGAC 59.116 40.000 0.00 0.00 0.00 4.79
2944 3175 5.650703 ACACAAATTTCCTATTACCCTTCCG 59.349 40.000 0.00 0.00 0.00 4.30
3004 3235 3.849645 GCCAGTGAACACGTGAAGAAATG 60.850 47.826 25.01 13.22 36.20 2.32
3005 3236 2.290641 GCCAGTGAACACGTGAAGAAAT 59.709 45.455 25.01 0.76 36.20 2.17
3006 3237 1.668751 GCCAGTGAACACGTGAAGAAA 59.331 47.619 25.01 0.00 36.20 2.52
3007 3238 1.295792 GCCAGTGAACACGTGAAGAA 58.704 50.000 25.01 1.40 36.20 2.52
3008 3239 0.531974 GGCCAGTGAACACGTGAAGA 60.532 55.000 25.01 1.38 36.20 2.87
3009 3240 0.813610 TGGCCAGTGAACACGTGAAG 60.814 55.000 25.01 4.72 36.20 3.02
3010 3241 0.813610 CTGGCCAGTGAACACGTGAA 60.814 55.000 25.53 4.23 36.20 3.18
3011 3242 1.227527 CTGGCCAGTGAACACGTGA 60.228 57.895 25.53 0.00 36.20 4.35
3012 3243 2.253758 CCTGGCCAGTGAACACGTG 61.254 63.158 30.63 15.48 36.20 4.49
3013 3244 2.111043 CCTGGCCAGTGAACACGT 59.889 61.111 30.63 0.00 36.20 4.49
3014 3245 1.961277 GACCTGGCCAGTGAACACG 60.961 63.158 30.63 15.99 36.20 4.49
3015 3246 0.886490 CAGACCTGGCCAGTGAACAC 60.886 60.000 30.63 14.40 0.00 3.32
3016 3247 1.344953 ACAGACCTGGCCAGTGAACA 61.345 55.000 30.63 0.00 34.19 3.18
3017 3248 0.179018 AACAGACCTGGCCAGTGAAC 60.179 55.000 30.63 17.70 34.19 3.18
3018 3249 0.550914 AAACAGACCTGGCCAGTGAA 59.449 50.000 30.63 0.00 34.19 3.18
3019 3250 0.179020 CAAACAGACCTGGCCAGTGA 60.179 55.000 30.63 0.00 34.19 3.41
3020 3251 1.174712 CCAAACAGACCTGGCCAGTG 61.175 60.000 30.63 23.82 34.19 3.66
3021 3252 1.151450 CCAAACAGACCTGGCCAGT 59.849 57.895 30.63 18.82 34.19 4.00
3022 3253 4.085876 CCAAACAGACCTGGCCAG 57.914 61.111 26.87 26.87 34.19 4.85
3026 3257 1.071471 ACTCGCCAAACAGACCTGG 59.929 57.895 1.82 0.00 35.67 4.45
3027 3258 0.249868 TCACTCGCCAAACAGACCTG 60.250 55.000 0.00 0.00 0.00 4.00
3028 3259 0.249911 GTCACTCGCCAAACAGACCT 60.250 55.000 0.00 0.00 0.00 3.85
3029 3260 0.249911 AGTCACTCGCCAAACAGACC 60.250 55.000 0.00 0.00 0.00 3.85
3030 3261 1.140816 GAGTCACTCGCCAAACAGAC 58.859 55.000 0.00 0.00 0.00 3.51
3031 3262 0.750249 TGAGTCACTCGCCAAACAGA 59.250 50.000 0.00 0.00 32.35 3.41
3032 3263 1.143305 CTGAGTCACTCGCCAAACAG 58.857 55.000 0.00 0.00 32.35 3.16
3048 3279 2.642311 TGATAACCCCAAAGAGCACTGA 59.358 45.455 0.00 0.00 0.00 3.41
3072 3303 3.562557 TGTTCCGAAAGTTGCTAGGAAAC 59.437 43.478 0.00 0.00 41.90 2.78
3090 3321 4.009675 TGAAGGGTGTATGAAGCATGTTC 58.990 43.478 0.00 0.00 0.00 3.18
3097 3328 4.264253 TCAAGCATGAAGGGTGTATGAAG 58.736 43.478 0.00 0.00 30.99 3.02
3142 3373 1.223187 GAACGTTCGGTGGACAACAT 58.777 50.000 13.36 0.00 0.00 2.71
3152 3383 0.944311 CACCTCCACTGAACGTTCGG 60.944 60.000 30.83 30.83 39.48 4.30
3230 3461 3.434299 GTGAAAATTGCCAGGATTGCTTG 59.566 43.478 0.00 0.00 0.00 4.01
3264 3495 6.978080 GCAAATTCTTCAGAAACAGGTAACAA 59.022 34.615 0.00 0.00 37.61 2.83
3266 3497 5.920840 GGCAAATTCTTCAGAAACAGGTAAC 59.079 40.000 0.00 0.00 37.61 2.50
3267 3498 5.596361 TGGCAAATTCTTCAGAAACAGGTAA 59.404 36.000 0.00 0.00 37.61 2.85
3268 3499 5.136828 TGGCAAATTCTTCAGAAACAGGTA 58.863 37.500 0.00 0.00 37.61 3.08
3269 3500 3.960102 TGGCAAATTCTTCAGAAACAGGT 59.040 39.130 0.00 0.00 37.61 4.00
3271 3502 8.592105 TTTTATGGCAAATTCTTCAGAAACAG 57.408 30.769 0.00 0.00 37.61 3.16
3272 3503 8.825745 GTTTTTATGGCAAATTCTTCAGAAACA 58.174 29.630 0.00 0.00 37.61 2.83
3277 3508 7.406799 AACGTTTTTATGGCAAATTCTTCAG 57.593 32.000 0.00 0.00 0.00 3.02
3289 3520 3.181535 GGCATTTGCGAACGTTTTTATGG 60.182 43.478 0.46 0.00 43.26 2.74
3299 3530 1.141665 GGGGATGGCATTTGCGAAC 59.858 57.895 0.00 0.00 43.26 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.