Multiple sequence alignment - TraesCS5D01G304000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G304000 chr5D 100.000 5505 0 0 1 5505 399222878 399228382 0.000000e+00 10166.0
1 TraesCS5D01G304000 chr5D 91.477 528 35 8 269 791 221528054 221528576 0.000000e+00 717.0
2 TraesCS5D01G304000 chr5D 84.007 544 48 21 4993 5505 447105365 447104830 2.310000e-133 486.0
3 TraesCS5D01G304000 chr5D 83.298 473 48 14 5025 5470 563410513 563410045 1.850000e-109 407.0
4 TraesCS5D01G304000 chr5D 97.419 155 1 3 3329 3480 399226069 399226223 1.520000e-65 261.0
5 TraesCS5D01G304000 chr5D 97.419 155 1 3 3192 3346 399226206 399226357 1.520000e-65 261.0
6 TraesCS5D01G304000 chr5D 75.175 572 61 37 4991 5504 44893745 44893197 1.560000e-45 195.0
7 TraesCS5D01G304000 chr5D 96.610 59 0 2 4023 4079 469062748 469062806 4.540000e-16 97.1
8 TraesCS5D01G304000 chr5D 94.828 58 2 1 4022 4079 273117887 273117943 7.600000e-14 89.8
9 TraesCS5D01G304000 chr5A 94.798 2057 70 13 793 2838 504869659 504871689 0.000000e+00 3171.0
10 TraesCS5D01G304000 chr5A 91.974 922 47 16 4078 4993 504872769 504873669 0.000000e+00 1267.0
11 TraesCS5D01G304000 chr5A 92.286 700 45 8 3330 4025 504872078 504872772 0.000000e+00 985.0
12 TraesCS5D01G304000 chr5A 91.218 501 38 5 2835 3331 504871717 504872215 0.000000e+00 676.0
13 TraesCS5D01G304000 chr5A 83.398 512 46 21 5028 5505 376836271 376835765 6.550000e-119 438.0
14 TraesCS5D01G304000 chr5A 90.517 232 11 4 793 1023 504883514 504883293 4.170000e-76 296.0
15 TraesCS5D01G304000 chr5A 79.649 285 28 6 4992 5260 42745072 42745342 1.580000e-40 178.0
16 TraesCS5D01G304000 chr5A 85.714 91 11 1 201 289 504869569 504869659 1.630000e-15 95.3
17 TraesCS5D01G304000 chr5A 87.671 73 2 5 4016 4081 23817520 23817592 1.640000e-10 78.7
18 TraesCS5D01G304000 chr5B 95.065 1378 45 6 1462 2838 479632287 479633642 0.000000e+00 2146.0
19 TraesCS5D01G304000 chr5B 92.593 918 45 16 4083 4994 479634714 479635614 0.000000e+00 1297.0
20 TraesCS5D01G304000 chr5B 94.540 696 28 5 3329 4023 479634027 479634713 0.000000e+00 1066.0
21 TraesCS5D01G304000 chr5B 92.508 654 27 6 797 1442 479631655 479632294 0.000000e+00 917.0
22 TraesCS5D01G304000 chr5B 92.958 497 33 2 2835 3330 479633670 479634165 0.000000e+00 723.0
23 TraesCS5D01G304000 chr5B 81.100 291 53 2 1 289 479631365 479631655 1.190000e-56 231.0
24 TraesCS5D01G304000 chr5B 92.063 63 3 2 4018 4080 69548109 69548049 2.730000e-13 87.9
25 TraesCS5D01G304000 chr5B 91.176 68 1 2 4021 4083 583738325 583738392 2.730000e-13 87.9
26 TraesCS5D01G304000 chr4D 94.378 498 26 2 289 786 502052562 502053057 0.000000e+00 763.0
27 TraesCS5D01G304000 chr4D 86.142 534 50 12 4993 5505 436874044 436873514 6.230000e-154 555.0
28 TraesCS5D01G304000 chr4D 93.548 62 1 3 4022 4081 472879860 472879920 7.600000e-14 89.8
29 TraesCS5D01G304000 chr4D 90.909 66 3 3 4022 4085 6594659 6594595 9.830000e-13 86.1
30 TraesCS5D01G304000 chr3D 93.587 499 30 2 289 786 329319258 329319755 0.000000e+00 743.0
31 TraesCS5D01G304000 chr3D 84.221 526 50 17 4993 5488 532181595 532181073 1.070000e-131 481.0
32 TraesCS5D01G304000 chr3D 81.076 539 54 19 4979 5487 409933792 409934312 2.410000e-103 387.0
33 TraesCS5D01G304000 chr3D 84.478 335 37 8 3534 3855 602060304 602059972 3.200000e-82 316.0
34 TraesCS5D01G304000 chr4B 92.337 522 37 3 272 793 362457265 362457783 0.000000e+00 739.0
35 TraesCS5D01G304000 chr4B 90.758 541 41 8 269 806 187981085 187980551 0.000000e+00 713.0
36 TraesCS5D01G304000 chr4B 87.185 437 39 11 5085 5505 93509192 93509627 1.070000e-131 481.0
37 TraesCS5D01G304000 chr3A 93.387 499 31 2 289 786 311450275 311450772 0.000000e+00 737.0
38 TraesCS5D01G304000 chr3A 83.827 371 40 10 5143 5502 234119684 234120045 8.840000e-88 335.0
39 TraesCS5D01G304000 chr7D 93.373 498 32 1 289 786 272749905 272749409 0.000000e+00 736.0
40 TraesCS5D01G304000 chr7D 93.028 502 32 3 289 789 252497232 252496733 0.000000e+00 730.0
41 TraesCS5D01G304000 chr6B 93.014 501 31 3 289 789 233606308 233606804 0.000000e+00 728.0
42 TraesCS5D01G304000 chr6D 85.375 547 43 14 4990 5505 302632392 302632932 2.920000e-147 532.0
43 TraesCS5D01G304000 chr2D 82.480 508 55 18 4990 5471 77440981 77441480 1.100000e-111 414.0
44 TraesCS5D01G304000 chr2D 90.909 66 3 3 4015 4079 455894584 455894647 9.830000e-13 86.1
45 TraesCS5D01G304000 chr6A 83.841 427 37 18 4989 5390 101427502 101427083 1.450000e-100 377.0
46 TraesCS5D01G304000 chr6A 84.590 305 31 11 5208 5505 49429073 49428778 6.980000e-74 289.0
47 TraesCS5D01G304000 chr3B 84.986 353 40 10 3511 3856 808987620 808987274 4.080000e-91 346.0
48 TraesCS5D01G304000 chr3B 80.336 417 41 18 4989 5388 817770777 817770385 1.510000e-70 278.0
49 TraesCS5D01G304000 chr7A 81.713 432 44 24 5093 5505 734546334 734545919 1.480000e-85 327.0
50 TraesCS5D01G304000 chr1B 93.443 61 4 0 4021 4081 668960746 668960686 2.110000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G304000 chr5D 399222878 399228382 5504 False 3562.666667 10166 98.279333 1 5505 3 chr5D.!!$F4 5504
1 TraesCS5D01G304000 chr5D 221528054 221528576 522 False 717.000000 717 91.477000 269 791 1 chr5D.!!$F1 522
2 TraesCS5D01G304000 chr5D 447104830 447105365 535 True 486.000000 486 84.007000 4993 5505 1 chr5D.!!$R2 512
3 TraesCS5D01G304000 chr5A 504869569 504873669 4100 False 1238.860000 3171 91.198000 201 4993 5 chr5A.!!$F3 4792
4 TraesCS5D01G304000 chr5A 376835765 376836271 506 True 438.000000 438 83.398000 5028 5505 1 chr5A.!!$R1 477
5 TraesCS5D01G304000 chr5B 479631365 479635614 4249 False 1063.333333 2146 91.460667 1 4994 6 chr5B.!!$F2 4993
6 TraesCS5D01G304000 chr4D 436873514 436874044 530 True 555.000000 555 86.142000 4993 5505 1 chr4D.!!$R2 512
7 TraesCS5D01G304000 chr3D 532181073 532181595 522 True 481.000000 481 84.221000 4993 5488 1 chr3D.!!$R1 495
8 TraesCS5D01G304000 chr3D 409933792 409934312 520 False 387.000000 387 81.076000 4979 5487 1 chr3D.!!$F2 508
9 TraesCS5D01G304000 chr4B 362457265 362457783 518 False 739.000000 739 92.337000 272 793 1 chr4B.!!$F2 521
10 TraesCS5D01G304000 chr4B 187980551 187981085 534 True 713.000000 713 90.758000 269 806 1 chr4B.!!$R1 537
11 TraesCS5D01G304000 chr6D 302632392 302632932 540 False 532.000000 532 85.375000 4990 5505 1 chr6D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 779 0.460284 ACCATCATCACGAACTCGGC 60.460 55.000 3.88 0.00 44.95 5.54 F
1346 1378 1.066929 GGCAAGGGCAGTTATGGTTTG 60.067 52.381 0.00 0.00 43.71 2.93 F
1581 1616 1.068895 TGAAACCATTTGCTGCTGGTG 59.931 47.619 12.17 2.84 44.97 4.17 F
3342 3415 0.464452 GGCGCCTGTGGTAGAACTAT 59.536 55.000 22.15 0.00 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2753 2792 0.683973 ACTCATCATCATCCTCGCCC 59.316 55.0 0.00 0.00 0.00 6.13 R
3323 3396 0.464452 ATAGTTCTACCACAGGCGCC 59.536 55.0 21.89 21.89 0.00 6.53 R
3353 3426 0.038744 CCAGTGAGAAATGGCCCTGT 59.961 55.0 0.00 0.00 0.00 4.00 R
4524 4604 0.318699 TTTAGGATCGATGAGCGCGG 60.319 55.0 8.83 0.00 40.61 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.029844 GTGGCAGCTCGAACACCTC 61.030 63.158 0.00 0.00 0.00 3.85
29 30 0.882474 CGAACACCTCGTCTCCTCTT 59.118 55.000 0.00 0.00 42.89 2.85
32 33 1.153939 CACCTCGTCTCCTCTTGCG 60.154 63.158 0.00 0.00 0.00 4.85
79 80 2.852413 CGATGTGGTCGTTGTCTATGTC 59.148 50.000 0.00 0.00 45.19 3.06
82 83 4.265904 TGTGGTCGTTGTCTATGTCAAT 57.734 40.909 0.00 0.00 0.00 2.57
84 85 4.688879 TGTGGTCGTTGTCTATGTCAATTC 59.311 41.667 0.00 0.00 0.00 2.17
85 86 4.688879 GTGGTCGTTGTCTATGTCAATTCA 59.311 41.667 0.00 0.00 0.00 2.57
86 87 5.351465 GTGGTCGTTGTCTATGTCAATTCAT 59.649 40.000 0.00 0.00 0.00 2.57
90 93 8.447833 GGTCGTTGTCTATGTCAATTCATAAAA 58.552 33.333 0.00 0.00 31.19 1.52
91 94 9.262472 GTCGTTGTCTATGTCAATTCATAAAAC 57.738 33.333 0.00 0.00 31.19 2.43
96 99 6.907212 GTCTATGTCAATTCATAAAACGGCAG 59.093 38.462 0.00 0.00 31.19 4.85
101 104 1.540267 TTCATAAAACGGCAGGGGTG 58.460 50.000 0.00 0.00 0.00 4.61
105 108 3.455177 TCATAAAACGGCAGGGGTGTATA 59.545 43.478 0.00 0.00 0.00 1.47
108 111 1.502690 AACGGCAGGGGTGTATATGA 58.497 50.000 0.00 0.00 0.00 2.15
112 115 2.878406 CGGCAGGGGTGTATATGAAAAG 59.122 50.000 0.00 0.00 0.00 2.27
113 116 2.623416 GGCAGGGGTGTATATGAAAAGC 59.377 50.000 0.00 0.00 0.00 3.51
116 119 2.508300 AGGGGTGTATATGAAAAGCCGT 59.492 45.455 0.00 0.00 0.00 5.68
119 122 3.450578 GGTGTATATGAAAAGCCGTCGA 58.549 45.455 0.00 0.00 0.00 4.20
123 126 2.572191 TATGAAAAGCCGTCGACGAT 57.428 45.000 37.65 23.10 43.02 3.73
126 129 1.278238 GAAAAGCCGTCGACGATGAT 58.722 50.000 37.65 19.08 43.02 2.45
127 130 1.659098 GAAAAGCCGTCGACGATGATT 59.341 47.619 37.65 23.70 43.02 2.57
128 131 0.999406 AAAGCCGTCGACGATGATTG 59.001 50.000 37.65 20.96 43.02 2.67
129 132 0.806102 AAGCCGTCGACGATGATTGG 60.806 55.000 37.65 20.24 43.02 3.16
134 137 2.047040 CGTCGACGATGATTGGATCAG 58.953 52.381 33.35 0.00 43.53 2.90
145 148 3.869272 GGATCAGCCAACGCAGCG 61.869 66.667 14.82 14.82 37.52 5.18
152 155 4.688419 CCAACGCAGCGCCACTTG 62.688 66.667 16.61 11.78 0.00 3.16
154 157 3.209097 AACGCAGCGCCACTTGTT 61.209 55.556 16.61 0.00 0.00 2.83
165 168 2.666619 CGCCACTTGTTGCTTCTTGATC 60.667 50.000 0.00 0.00 0.00 2.92
167 170 2.095567 CCACTTGTTGCTTCTTGATCGG 60.096 50.000 0.00 0.00 0.00 4.18
168 171 1.537202 ACTTGTTGCTTCTTGATCGGC 59.463 47.619 0.00 0.00 0.00 5.54
175 178 1.131315 GCTTCTTGATCGGCTTTGGAC 59.869 52.381 0.00 0.00 0.00 4.02
180 183 2.214376 TGATCGGCTTTGGACCAAAT 57.786 45.000 19.87 4.89 32.70 2.32
228 231 0.532115 GCGGGATGGAGTTTTGCAAT 59.468 50.000 0.00 0.00 0.00 3.56
234 237 4.381932 GGGATGGAGTTTTGCAATTACCTG 60.382 45.833 0.00 0.00 0.00 4.00
248 251 7.062322 TGCAATTACCTGGACTAAATCATCAT 58.938 34.615 0.00 0.00 0.00 2.45
278 283 1.152756 GTTCTTGGGCCTGTGGTGT 60.153 57.895 4.53 0.00 0.00 4.16
284 289 2.390225 TGGGCCTGTGGTGTTTTTAT 57.610 45.000 4.53 0.00 0.00 1.40
292 297 5.648092 GCCTGTGGTGTTTTTATCTCACTAT 59.352 40.000 0.00 0.00 33.30 2.12
300 305 9.167311 GGTGTTTTTATCTCACTATCAAGATGT 57.833 33.333 0.00 0.00 34.21 3.06
365 373 1.879380 CGTGTTGTGATTGACCCATGT 59.121 47.619 0.00 0.00 0.00 3.21
442 450 9.793252 AAAAATGGTATCTCGAGAATTTCATTG 57.207 29.630 20.91 0.00 0.00 2.82
498 510 3.936203 GGGCGTGGTGGTGACTGA 61.936 66.667 0.00 0.00 0.00 3.41
513 525 2.606213 TGATGGTCGGACTGGGCA 60.606 61.111 8.23 0.00 0.00 5.36
516 528 1.690219 GATGGTCGGACTGGGCAGAT 61.690 60.000 8.23 0.00 0.00 2.90
581 593 4.774726 TGCTAGATTGTTCCAGAGACTTCT 59.225 41.667 0.00 0.00 0.00 2.85
655 667 6.490040 GCAAGGCCTTATCTATAAATGTGGAA 59.510 38.462 20.00 0.00 0.00 3.53
659 671 8.673251 AGGCCTTATCTATAAATGTGGAAAGAT 58.327 33.333 0.00 0.00 0.00 2.40
666 678 2.198827 AATGTGGAAAGATGTGCGGA 57.801 45.000 0.00 0.00 0.00 5.54
718 730 7.755373 TGCTTTCTATCCGTCAAATATAGATCG 59.245 37.037 0.00 0.00 33.44 3.69
744 756 5.538813 ACGGTCTATATTACAAGATGGCAGA 59.461 40.000 0.00 0.00 0.00 4.26
747 759 7.390027 GGTCTATATTACAAGATGGCAGACAT 58.610 38.462 0.00 0.00 44.18 3.06
759 771 2.138320 GGCAGACATACCATCATCACG 58.862 52.381 0.00 0.00 0.00 4.35
767 779 0.460284 ACCATCATCACGAACTCGGC 60.460 55.000 3.88 0.00 44.95 5.54
1089 1118 2.791927 GCTCGATTTTCCCGTGCC 59.208 61.111 0.00 0.00 39.64 5.01
1300 1332 2.445085 TGTGGTCCGTGGAGTGGT 60.445 61.111 0.00 0.00 0.00 4.16
1306 1338 2.073716 TCCGTGGAGTGGTGGGTTT 61.074 57.895 0.00 0.00 0.00 3.27
1346 1378 1.066929 GGCAAGGGCAGTTATGGTTTG 60.067 52.381 0.00 0.00 43.71 2.93
1355 1387 4.082408 GGCAGTTATGGTTTGGTAGGTTTC 60.082 45.833 0.00 0.00 0.00 2.78
1411 1446 3.498397 CGTTGTTCTGTACTTTGATGGCT 59.502 43.478 0.00 0.00 0.00 4.75
1412 1447 4.024048 CGTTGTTCTGTACTTTGATGGCTT 60.024 41.667 0.00 0.00 0.00 4.35
1472 1507 1.137404 GGCGTGCTTGTAATGCCTG 59.863 57.895 0.00 0.00 44.82 4.85
1581 1616 1.068895 TGAAACCATTTGCTGCTGGTG 59.931 47.619 12.17 2.84 44.97 4.17
1619 1654 2.289694 TGCCTAGGAGTTTGCTGTCTTC 60.290 50.000 14.75 0.00 0.00 2.87
1624 1659 4.156455 AGGAGTTTGCTGTCTTCAAGAA 57.844 40.909 0.00 0.00 0.00 2.52
1634 1669 8.578308 TTGCTGTCTTCAAGAAAATTGTTATG 57.422 30.769 0.00 0.00 0.00 1.90
1662 1700 6.585702 TGTAATTTTGTTGAGCATGAAATCGG 59.414 34.615 0.00 0.00 0.00 4.18
1663 1701 2.634982 TTGTTGAGCATGAAATCGGC 57.365 45.000 0.00 0.00 0.00 5.54
1664 1702 1.532523 TGTTGAGCATGAAATCGGCA 58.467 45.000 0.00 0.00 0.00 5.69
1693 1731 5.424121 TCGCTACCGGTTAAGATACTTAC 57.576 43.478 15.04 0.00 34.56 2.34
1694 1732 5.126067 TCGCTACCGGTTAAGATACTTACT 58.874 41.667 15.04 0.00 34.56 2.24
1695 1733 5.590259 TCGCTACCGGTTAAGATACTTACTT 59.410 40.000 15.04 0.00 34.56 2.24
1696 1734 6.765989 TCGCTACCGGTTAAGATACTTACTTA 59.234 38.462 15.04 0.00 34.56 2.24
1823 1861 1.488393 GTGCTCCCCTTTCTATCTGCT 59.512 52.381 0.00 0.00 0.00 4.24
2050 2089 6.712095 GTGCTGGATTCATGAAACATATCCTA 59.288 38.462 20.45 10.06 36.55 2.94
2073 2112 3.358707 TTGTGCATTTCAGCAGTTCTG 57.641 42.857 0.00 0.00 46.69 3.02
2342 2381 7.559590 ACTCTTATGCAGGTATCACATTTTC 57.440 36.000 0.00 0.00 0.00 2.29
2351 2390 6.624423 CAGGTATCACATTTTCTTTCCTTGG 58.376 40.000 0.00 0.00 0.00 3.61
2364 2403 2.534042 TCCTTGGTTGTCACCCAAAA 57.466 45.000 3.18 0.00 43.49 2.44
2537 2576 7.341030 TGAAGCCAATTCTTGATGAGATAGAA 58.659 34.615 0.00 0.00 38.83 2.10
2575 2614 3.694072 GCAATGGTGAAGTAGGTATTGCA 59.306 43.478 13.08 0.00 45.71 4.08
2635 2674 9.322773 TGCTGAGATATTCTTCTTTACTTCATG 57.677 33.333 0.00 0.00 0.00 3.07
2681 2720 3.409577 TCTTCAAAAGATTGGCCAGGCC 61.410 50.000 25.54 25.54 40.10 5.19
2724 2763 3.131933 AGATGCTGCTACTTCCACTGTAG 59.868 47.826 0.00 0.00 40.05 2.74
2753 2792 4.934602 GGACCTCAAGAAACTGATGAAGAG 59.065 45.833 0.00 0.00 0.00 2.85
2829 2868 5.563842 CAGAGGTAATTGCGTCAAAGAATC 58.436 41.667 16.78 0.00 0.00 2.52
2832 2871 6.092807 AGAGGTAATTGCGTCAAAGAATCTTC 59.907 38.462 16.78 0.00 0.00 2.87
2871 2941 9.447157 CCAATTTTGTTGGTATTTATCCATGTT 57.553 29.630 0.00 0.00 34.75 2.71
2878 2948 9.787435 TGTTGGTATTTATCCATGTTAGTATCC 57.213 33.333 0.00 0.00 34.75 2.59
2938 3008 9.567848 CATTTAGTGTTTACCATATTTGTCACC 57.432 33.333 0.00 0.00 0.00 4.02
2939 3009 5.873179 AGTGTTTACCATATTTGTCACCG 57.127 39.130 0.00 0.00 0.00 4.94
2982 3052 3.019564 GCAAGGCATGTATCTCCAACTT 58.980 45.455 0.00 0.00 0.00 2.66
2996 3066 3.882888 CTCCAACTTGGCTCACAAACTTA 59.117 43.478 2.52 0.00 38.91 2.24
3002 3072 7.872483 CCAACTTGGCTCACAAACTTATATTTT 59.128 33.333 0.00 0.00 38.91 1.82
3093 3166 2.486592 ACAGGCACCGTGCTTATAAAAC 59.513 45.455 22.41 3.89 44.28 2.43
3147 3220 9.612620 CAACTCTCAAATTGTCCAGTAATTTAC 57.387 33.333 0.00 0.00 36.02 2.01
3148 3221 8.918202 ACTCTCAAATTGTCCAGTAATTTACA 57.082 30.769 9.15 0.00 36.02 2.41
3296 3369 4.887071 ACTGAACTTTGCACTAAATGTGGA 59.113 37.500 0.00 0.00 46.27 4.02
3299 3372 6.815089 TGAACTTTGCACTAAATGTGGATTT 58.185 32.000 0.00 0.00 46.16 2.17
3312 3385 6.851222 AATGTGGATTTACTTCTAGCATCG 57.149 37.500 0.00 0.00 0.00 3.84
3330 3403 1.939934 TCGATCTTTTATTGGCGCCTG 59.060 47.619 29.70 8.80 0.00 4.85
3331 3404 1.670811 CGATCTTTTATTGGCGCCTGT 59.329 47.619 29.70 18.41 0.00 4.00
3332 3405 2.539547 CGATCTTTTATTGGCGCCTGTG 60.540 50.000 29.70 10.59 0.00 3.66
3333 3406 1.173043 TCTTTTATTGGCGCCTGTGG 58.827 50.000 29.70 11.09 0.00 4.17
3334 3407 0.887933 CTTTTATTGGCGCCTGTGGT 59.112 50.000 29.70 11.19 0.00 4.16
3335 3408 2.088423 CTTTTATTGGCGCCTGTGGTA 58.912 47.619 29.70 10.16 0.00 3.25
3336 3409 1.745232 TTTATTGGCGCCTGTGGTAG 58.255 50.000 29.70 0.00 0.00 3.18
3337 3410 0.906066 TTATTGGCGCCTGTGGTAGA 59.094 50.000 29.70 0.07 0.00 2.59
3338 3411 0.906066 TATTGGCGCCTGTGGTAGAA 59.094 50.000 29.70 11.34 0.00 2.10
3339 3412 0.676782 ATTGGCGCCTGTGGTAGAAC 60.677 55.000 29.70 0.00 0.00 3.01
3340 3413 1.764571 TTGGCGCCTGTGGTAGAACT 61.765 55.000 29.70 0.00 0.00 3.01
3341 3414 0.901114 TGGCGCCTGTGGTAGAACTA 60.901 55.000 29.70 0.00 0.00 2.24
3342 3415 0.464452 GGCGCCTGTGGTAGAACTAT 59.536 55.000 22.15 0.00 0.00 2.12
3343 3416 1.538419 GGCGCCTGTGGTAGAACTATC 60.538 57.143 22.15 0.00 0.00 2.08
3344 3417 1.409427 GCGCCTGTGGTAGAACTATCT 59.591 52.381 0.00 0.00 39.82 1.98
3345 3418 2.621998 GCGCCTGTGGTAGAACTATCTA 59.378 50.000 0.00 0.00 37.10 1.98
3346 3419 3.067742 GCGCCTGTGGTAGAACTATCTAA 59.932 47.826 0.00 0.00 39.81 2.10
3347 3420 4.793353 GCGCCTGTGGTAGAACTATCTAAG 60.793 50.000 0.00 0.00 39.81 2.18
3348 3421 4.623002 GCCTGTGGTAGAACTATCTAAGC 58.377 47.826 0.00 0.00 39.81 3.09
3349 3422 4.342665 GCCTGTGGTAGAACTATCTAAGCT 59.657 45.833 0.00 0.00 39.81 3.74
3350 3423 5.163395 GCCTGTGGTAGAACTATCTAAGCTT 60.163 44.000 3.48 3.48 39.81 3.74
3351 3424 6.276847 CCTGTGGTAGAACTATCTAAGCTTG 58.723 44.000 9.86 0.00 39.81 4.01
3352 3425 6.096987 CCTGTGGTAGAACTATCTAAGCTTGA 59.903 42.308 9.86 5.12 39.81 3.02
3353 3426 7.363880 CCTGTGGTAGAACTATCTAAGCTTGAA 60.364 40.741 9.86 0.00 39.81 2.69
3354 3427 7.321153 TGTGGTAGAACTATCTAAGCTTGAAC 58.679 38.462 9.86 0.00 39.81 3.18
3355 3428 7.039293 TGTGGTAGAACTATCTAAGCTTGAACA 60.039 37.037 9.86 0.00 39.81 3.18
3356 3429 7.489757 GTGGTAGAACTATCTAAGCTTGAACAG 59.510 40.741 9.86 8.73 39.81 3.16
3357 3430 6.981559 GGTAGAACTATCTAAGCTTGAACAGG 59.018 42.308 9.86 0.00 39.81 4.00
3358 3431 5.983540 AGAACTATCTAAGCTTGAACAGGG 58.016 41.667 9.86 0.00 32.88 4.45
3359 3432 4.143986 ACTATCTAAGCTTGAACAGGGC 57.856 45.455 9.86 0.00 0.00 5.19
3360 3433 2.426842 ATCTAAGCTTGAACAGGGCC 57.573 50.000 9.86 0.00 0.00 5.80
3361 3434 1.064003 TCTAAGCTTGAACAGGGCCA 58.936 50.000 9.86 0.00 0.00 5.36
3362 3435 1.635487 TCTAAGCTTGAACAGGGCCAT 59.365 47.619 9.86 0.00 0.00 4.40
3363 3436 2.041620 TCTAAGCTTGAACAGGGCCATT 59.958 45.455 9.86 0.00 0.00 3.16
3364 3437 1.720781 AAGCTTGAACAGGGCCATTT 58.279 45.000 6.18 0.00 0.00 2.32
3365 3438 1.260544 AGCTTGAACAGGGCCATTTC 58.739 50.000 6.18 8.32 0.00 2.17
3366 3439 1.203100 AGCTTGAACAGGGCCATTTCT 60.203 47.619 6.18 0.00 0.00 2.52
3367 3440 1.203287 GCTTGAACAGGGCCATTTCTC 59.797 52.381 6.18 0.00 0.00 2.87
3368 3441 2.517959 CTTGAACAGGGCCATTTCTCA 58.482 47.619 6.18 0.00 0.00 3.27
3369 3442 1.909700 TGAACAGGGCCATTTCTCAC 58.090 50.000 6.18 0.00 0.00 3.51
3370 3443 1.425066 TGAACAGGGCCATTTCTCACT 59.575 47.619 6.18 0.00 0.00 3.41
3371 3444 1.815003 GAACAGGGCCATTTCTCACTG 59.185 52.381 6.18 1.96 0.00 3.66
3372 3445 0.038744 ACAGGGCCATTTCTCACTGG 59.961 55.000 6.18 0.00 35.53 4.00
3373 3446 0.329261 CAGGGCCATTTCTCACTGGA 59.671 55.000 6.18 0.00 34.24 3.86
3374 3447 1.064166 CAGGGCCATTTCTCACTGGAT 60.064 52.381 6.18 0.00 34.24 3.41
3375 3448 2.173356 CAGGGCCATTTCTCACTGGATA 59.827 50.000 6.18 0.00 34.24 2.59
3376 3449 2.173569 AGGGCCATTTCTCACTGGATAC 59.826 50.000 6.18 0.00 34.24 2.24
3377 3450 2.576615 GGCCATTTCTCACTGGATACC 58.423 52.381 0.00 0.00 34.24 2.73
3378 3451 2.092429 GGCCATTTCTCACTGGATACCA 60.092 50.000 0.00 0.00 34.24 3.25
3379 3452 3.435601 GGCCATTTCTCACTGGATACCAT 60.436 47.826 0.00 0.00 34.24 3.55
3380 3453 4.202461 GGCCATTTCTCACTGGATACCATA 60.202 45.833 0.00 0.00 34.24 2.74
3381 3454 4.999950 GCCATTTCTCACTGGATACCATAG 59.000 45.833 0.00 0.00 34.24 2.23
3382 3455 4.999950 CCATTTCTCACTGGATACCATAGC 59.000 45.833 0.00 0.00 34.24 2.97
3383 3456 5.221803 CCATTTCTCACTGGATACCATAGCT 60.222 44.000 0.00 0.00 34.24 3.32
3384 3457 5.957771 TTTCTCACTGGATACCATAGCTT 57.042 39.130 0.00 0.00 30.82 3.74
3385 3458 5.957771 TTCTCACTGGATACCATAGCTTT 57.042 39.130 0.00 0.00 30.82 3.51
3386 3459 5.282055 TCTCACTGGATACCATAGCTTTG 57.718 43.478 0.00 0.00 30.82 2.77
3387 3460 4.716784 TCTCACTGGATACCATAGCTTTGT 59.283 41.667 3.39 0.00 30.82 2.83
3388 3461 5.189736 TCTCACTGGATACCATAGCTTTGTT 59.810 40.000 3.39 0.00 30.82 2.83
3389 3462 5.815581 TCACTGGATACCATAGCTTTGTTT 58.184 37.500 3.39 0.00 30.82 2.83
3390 3463 6.245408 TCACTGGATACCATAGCTTTGTTTT 58.755 36.000 3.39 0.00 30.82 2.43
3391 3464 6.374333 TCACTGGATACCATAGCTTTGTTTTC 59.626 38.462 3.39 0.00 30.82 2.29
3392 3465 6.375455 CACTGGATACCATAGCTTTGTTTTCT 59.625 38.462 3.39 0.00 30.82 2.52
3393 3466 6.948309 ACTGGATACCATAGCTTTGTTTTCTT 59.052 34.615 3.39 0.00 30.82 2.52
3394 3467 7.451566 ACTGGATACCATAGCTTTGTTTTCTTT 59.548 33.333 3.39 0.00 30.82 2.52
3395 3468 7.826690 TGGATACCATAGCTTTGTTTTCTTTC 58.173 34.615 3.39 0.00 0.00 2.62
3396 3469 7.669722 TGGATACCATAGCTTTGTTTTCTTTCT 59.330 33.333 3.39 0.00 0.00 2.52
3397 3470 9.174166 GGATACCATAGCTTTGTTTTCTTTCTA 57.826 33.333 3.39 0.00 0.00 2.10
3416 3489 9.449719 TCTTTCTAAATAGGAATTCCACTGAAC 57.550 33.333 26.22 0.00 38.89 3.18
3417 3490 9.454859 CTTTCTAAATAGGAATTCCACTGAACT 57.545 33.333 26.22 6.33 38.89 3.01
3418 3491 9.807921 TTTCTAAATAGGAATTCCACTGAACTT 57.192 29.630 26.22 11.14 38.89 2.66
3419 3492 9.807921 TTCTAAATAGGAATTCCACTGAACTTT 57.192 29.630 26.22 14.81 38.89 2.66
3420 3493 9.231297 TCTAAATAGGAATTCCACTGAACTTTG 57.769 33.333 26.22 9.90 38.89 2.77
3421 3494 5.904362 ATAGGAATTCCACTGAACTTTGC 57.096 39.130 26.22 0.00 38.89 3.68
3422 3495 3.565307 AGGAATTCCACTGAACTTTGCA 58.435 40.909 26.22 0.00 38.89 4.08
3423 3496 3.319122 AGGAATTCCACTGAACTTTGCAC 59.681 43.478 26.22 0.00 38.89 4.57
3424 3497 3.319122 GGAATTCCACTGAACTTTGCACT 59.681 43.478 20.04 0.00 35.64 4.40
3425 3498 4.518970 GGAATTCCACTGAACTTTGCACTA 59.481 41.667 20.04 0.00 35.64 2.74
3426 3499 5.009610 GGAATTCCACTGAACTTTGCACTAA 59.990 40.000 20.04 0.00 35.64 2.24
3427 3500 6.460953 GGAATTCCACTGAACTTTGCACTAAA 60.461 38.462 20.04 0.00 35.64 1.85
3428 3501 6.655078 ATTCCACTGAACTTTGCACTAAAT 57.345 33.333 0.00 0.00 32.13 1.40
3429 3502 5.437289 TCCACTGAACTTTGCACTAAATG 57.563 39.130 0.00 0.00 0.00 2.32
3430 3503 4.887071 TCCACTGAACTTTGCACTAAATGT 59.113 37.500 0.00 0.00 0.00 2.71
3431 3504 7.948384 ATTCCACTGAACTTTGCACTAAATGTG 60.948 37.037 0.00 0.00 40.43 3.21
3432 3505 4.977963 CACTGAACTTTGCACTAAATGTGG 59.022 41.667 0.00 0.00 46.27 4.17
3433 3506 4.887071 ACTGAACTTTGCACTAAATGTGGA 59.113 37.500 0.00 0.00 46.27 4.02
3434 3507 5.536161 ACTGAACTTTGCACTAAATGTGGAT 59.464 36.000 0.00 0.00 46.16 3.41
3435 3508 6.040842 ACTGAACTTTGCACTAAATGTGGATT 59.959 34.615 0.00 0.00 46.16 3.01
3436 3509 6.815089 TGAACTTTGCACTAAATGTGGATTT 58.185 32.000 0.00 0.00 46.16 2.17
3437 3510 7.946207 TGAACTTTGCACTAAATGTGGATTTA 58.054 30.769 0.00 0.00 46.16 1.40
3438 3511 7.865385 TGAACTTTGCACTAAATGTGGATTTAC 59.135 33.333 0.00 0.00 46.16 2.01
3439 3512 7.524717 ACTTTGCACTAAATGTGGATTTACT 57.475 32.000 0.00 0.00 46.16 2.24
3440 3513 7.951591 ACTTTGCACTAAATGTGGATTTACTT 58.048 30.769 0.00 0.00 46.16 2.24
3441 3514 8.082242 ACTTTGCACTAAATGTGGATTTACTTC 58.918 33.333 0.00 0.00 46.16 3.01
3442 3515 7.759489 TTGCACTAAATGTGGATTTACTTCT 57.241 32.000 0.00 0.00 46.16 2.85
3443 3516 8.856153 TTGCACTAAATGTGGATTTACTTCTA 57.144 30.769 0.00 0.00 46.16 2.10
3444 3517 8.492673 TGCACTAAATGTGGATTTACTTCTAG 57.507 34.615 0.00 0.00 46.27 2.43
3445 3518 7.065803 TGCACTAAATGTGGATTTACTTCTAGC 59.934 37.037 0.00 0.00 46.27 3.42
3446 3519 7.065803 GCACTAAATGTGGATTTACTTCTAGCA 59.934 37.037 0.00 0.00 46.27 3.49
3447 3520 9.113838 CACTAAATGTGGATTTACTTCTAGCAT 57.886 33.333 0.00 0.00 42.68 3.79
3448 3521 9.331282 ACTAAATGTGGATTTACTTCTAGCATC 57.669 33.333 0.00 0.00 33.63 3.91
3449 3522 6.851222 AATGTGGATTTACTTCTAGCATCG 57.149 37.500 0.00 0.00 0.00 3.84
3450 3523 5.592104 TGTGGATTTACTTCTAGCATCGA 57.408 39.130 0.00 0.00 0.00 3.59
3451 3524 6.161855 TGTGGATTTACTTCTAGCATCGAT 57.838 37.500 0.00 0.00 0.00 3.59
3452 3525 6.216569 TGTGGATTTACTTCTAGCATCGATC 58.783 40.000 0.00 0.00 0.00 3.69
3453 3526 6.040955 TGTGGATTTACTTCTAGCATCGATCT 59.959 38.462 0.00 0.00 0.00 2.75
3454 3527 6.926272 GTGGATTTACTTCTAGCATCGATCTT 59.074 38.462 0.00 0.00 0.00 2.40
3455 3528 7.439655 GTGGATTTACTTCTAGCATCGATCTTT 59.560 37.037 0.00 0.00 0.00 2.52
3456 3529 7.987458 TGGATTTACTTCTAGCATCGATCTTTT 59.013 33.333 0.00 0.00 0.00 2.27
3457 3530 9.477484 GGATTTACTTCTAGCATCGATCTTTTA 57.523 33.333 0.00 0.00 0.00 1.52
3461 3534 7.721286 ACTTCTAGCATCGATCTTTTATTGG 57.279 36.000 0.00 0.00 0.00 3.16
3462 3535 6.203723 ACTTCTAGCATCGATCTTTTATTGGC 59.796 38.462 0.00 0.00 0.00 4.52
3463 3536 3.885484 AGCATCGATCTTTTATTGGCG 57.115 42.857 0.00 0.00 0.00 5.69
3464 3537 2.031682 AGCATCGATCTTTTATTGGCGC 60.032 45.455 0.00 0.00 0.00 6.53
3465 3538 2.918131 GCATCGATCTTTTATTGGCGCC 60.918 50.000 22.73 22.73 0.00 6.53
3475 3548 3.569194 TTATTGGCGCCTGAGGAAATA 57.431 42.857 29.70 18.38 0.00 1.40
3531 3606 3.697542 TGCTGCATTGACAAGCTGAATAT 59.302 39.130 0.00 0.00 32.24 1.28
3587 3662 4.083057 GGAGCAAACAAGGATGAAGAAGAC 60.083 45.833 0.00 0.00 0.00 3.01
3703 3778 4.111577 TCAGACCATTTTGAGTATCCCCT 58.888 43.478 0.00 0.00 0.00 4.79
3828 3903 9.988815 GTTTCTAGTCATGGTATATCTCATTGT 57.011 33.333 0.00 0.00 0.00 2.71
3958 4033 9.965824 AATTGTAACTTGGAATTACAGAACTTG 57.034 29.630 0.00 0.00 42.06 3.16
4000 4075 0.033601 TCAAGGCCACCTGTGTTGTT 60.034 50.000 5.01 0.00 32.13 2.83
4031 4106 6.889301 TTGTAGTATATGTTACTCCCTCCG 57.111 41.667 0.00 0.00 0.00 4.63
4032 4107 5.945310 TGTAGTATATGTTACTCCCTCCGT 58.055 41.667 0.00 0.00 0.00 4.69
4033 4108 7.078249 TGTAGTATATGTTACTCCCTCCGTA 57.922 40.000 0.00 0.00 0.00 4.02
4034 4109 7.517320 TGTAGTATATGTTACTCCCTCCGTAA 58.483 38.462 0.00 0.00 0.00 3.18
4035 4110 7.998383 TGTAGTATATGTTACTCCCTCCGTAAA 59.002 37.037 0.00 0.00 0.00 2.01
4036 4111 7.521871 AGTATATGTTACTCCCTCCGTAAAG 57.478 40.000 0.00 0.00 0.00 1.85
4037 4112 7.293073 AGTATATGTTACTCCCTCCGTAAAGA 58.707 38.462 0.00 0.00 0.00 2.52
4038 4113 7.781693 AGTATATGTTACTCCCTCCGTAAAGAA 59.218 37.037 0.00 0.00 0.00 2.52
4039 4114 5.750352 ATGTTACTCCCTCCGTAAAGAAA 57.250 39.130 0.00 0.00 0.00 2.52
4040 4115 5.750352 TGTTACTCCCTCCGTAAAGAAAT 57.250 39.130 0.00 0.00 0.00 2.17
4041 4116 6.855763 TGTTACTCCCTCCGTAAAGAAATA 57.144 37.500 0.00 0.00 0.00 1.40
4042 4117 7.427989 TGTTACTCCCTCCGTAAAGAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
4043 4118 8.537728 TGTTACTCCCTCCGTAAAGAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
4044 4119 8.980596 TGTTACTCCCTCCGTAAAGAAATATAA 58.019 33.333 0.00 0.00 0.00 0.98
4045 4120 9.473640 GTTACTCCCTCCGTAAAGAAATATAAG 57.526 37.037 0.00 0.00 0.00 1.73
4046 4121 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4047 4122 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4048 4123 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4049 4124 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
4050 4125 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
4051 4126 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
4205 4283 1.283321 GAAATCCTTCTGGAGGCAGGT 59.717 52.381 0.00 0.00 46.91 4.00
4244 4322 3.655777 TGGATAAGAACAAGAACACCCCT 59.344 43.478 0.00 0.00 0.00 4.79
4327 4405 3.365364 GCTGCTGTGTAAGTGAAACCATC 60.365 47.826 0.00 0.00 37.80 3.51
4328 4406 4.067896 CTGCTGTGTAAGTGAAACCATCT 58.932 43.478 0.00 0.00 37.80 2.90
4329 4407 4.065088 TGCTGTGTAAGTGAAACCATCTC 58.935 43.478 0.00 0.00 37.80 2.75
4330 4408 4.202357 TGCTGTGTAAGTGAAACCATCTCT 60.202 41.667 0.00 0.00 37.80 3.10
4341 4419 5.868801 GTGAAACCATCTCTTCTCTTCTCTG 59.131 44.000 0.00 0.00 0.00 3.35
4368 4446 1.091771 AACCAGCATGAATCGCCGAG 61.092 55.000 0.00 0.00 39.69 4.63
4370 4448 2.590007 AGCATGAATCGCCGAGCC 60.590 61.111 0.00 0.00 0.00 4.70
4392 4470 3.003689 CCTCGCTCACATTCAACTGTTTT 59.996 43.478 0.00 0.00 0.00 2.43
4399 4477 6.252655 GCTCACATTCAACTGTTTTTAAACGT 59.747 34.615 0.00 0.00 41.74 3.99
4474 4553 2.997897 AGCCAGGACGAGGTGGTC 60.998 66.667 0.00 0.00 36.10 4.02
4521 4601 1.140312 TGAAGCAAACCCTCAGACCT 58.860 50.000 0.00 0.00 0.00 3.85
4523 4603 0.111253 AAGCAAACCCTCAGACCTGG 59.889 55.000 0.00 0.00 0.00 4.45
4524 4604 1.973812 GCAAACCCTCAGACCTGGC 60.974 63.158 0.00 0.00 0.00 4.85
4525 4605 1.303643 CAAACCCTCAGACCTGGCC 60.304 63.158 0.00 0.00 0.00 5.36
4573 4654 3.760035 TTCTGGACTCTCGGCGGC 61.760 66.667 7.21 0.00 0.00 6.53
4733 4814 1.406069 CCTGTTCTTGGTCCATCTCCG 60.406 57.143 0.00 0.00 0.00 4.63
4875 4960 2.276732 TGTTTAGGCTTGCTGCTTCT 57.723 45.000 0.00 0.00 42.39 2.85
4884 4969 2.350580 GCTTGCTGCTTCTGTTCTCTTG 60.351 50.000 0.00 0.00 38.95 3.02
4887 4972 3.072211 TGCTGCTTCTGTTCTCTTGATG 58.928 45.455 0.00 0.00 0.00 3.07
4912 4997 6.560253 TTAGAAAATCTTTGTGAGTCCTGC 57.440 37.500 0.00 0.00 0.00 4.85
4917 5002 0.601046 CTTTGTGAGTCCTGCAGCGA 60.601 55.000 8.66 4.33 0.00 4.93
4942 5027 7.162082 AGAACTCGGTTTCAGACTGATTTTAT 58.838 34.615 5.87 0.00 42.63 1.40
4952 5037 9.607988 TTTCAGACTGATTTTATAAGGCGATTA 57.392 29.630 5.87 0.00 0.00 1.75
4979 5064 3.626924 ACGAGGGCGAAACCAGCT 61.627 61.111 0.00 0.00 42.05 4.24
5000 5085 3.202906 TCACAAGTGTGTTAGAGCAACC 58.797 45.455 11.06 0.00 45.76 3.77
5001 5086 3.118408 TCACAAGTGTGTTAGAGCAACCT 60.118 43.478 11.06 0.00 45.76 3.50
5016 5101 3.382832 CCTCACTCGTTCGGCCCT 61.383 66.667 0.00 0.00 0.00 5.19
5089 5176 0.757188 CTGGCGATCTAGGTCCCAGT 60.757 60.000 22.85 0.00 38.55 4.00
5122 5223 2.655001 GGCGTCGTAAATTCAAACTTGC 59.345 45.455 0.00 0.00 0.00 4.01
5132 5233 1.631405 TCAAACTTGCCCATTCCTGG 58.369 50.000 0.00 0.00 42.73 4.45
5180 5282 2.110213 AGCGCAACAAAGTCCCGA 59.890 55.556 11.47 0.00 0.00 5.14
5227 5329 5.180492 AGTTCGGCGATCAATAAAAAGTTCA 59.820 36.000 19.04 0.00 0.00 3.18
5234 5336 4.560136 TCAATAAAAAGTTCAGCGTGCA 57.440 36.364 0.00 0.00 0.00 4.57
5235 5337 4.926244 TCAATAAAAAGTTCAGCGTGCAA 58.074 34.783 0.00 0.00 0.00 4.08
5271 5375 1.079956 GGCAATGCATCAAACGGCA 60.080 52.632 7.79 0.00 45.23 5.69
5291 5408 3.692406 GTCGGACTGGCGGGAGTT 61.692 66.667 0.00 0.00 0.00 3.01
5394 5516 2.967397 CAGTCGGCGTGGGAGTTA 59.033 61.111 6.85 0.00 0.00 2.24
5433 5558 3.664025 TTGAGGATGAGGCCACGCG 62.664 63.158 5.01 3.53 0.00 6.01
5437 5562 2.742372 GATGAGGCCACGCGTTGT 60.742 61.111 10.22 0.00 0.00 3.32
5481 5610 3.024609 CGATCGCCGACATGTCCG 61.025 66.667 20.03 17.65 41.76 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.492090 CCGCAAGAGGAGACGAGG 59.508 66.667 0.00 0.00 43.02 4.63
19 20 3.417275 ATCGCCGCAAGAGGAGACG 62.417 63.158 0.00 0.00 42.69 4.18
23 24 2.496341 CTCATCGCCGCAAGAGGA 59.504 61.111 0.00 0.00 43.02 3.71
29 30 4.081185 TGGAAGCTCATCGCCGCA 62.081 61.111 0.00 0.00 40.39 5.69
44 45 1.227764 CATCGGGTGGATCTGCTGG 60.228 63.158 0.00 0.00 31.28 4.85
46 47 1.524002 CACATCGGGTGGATCTGCT 59.476 57.895 0.00 0.00 44.04 4.24
47 48 4.131376 CACATCGGGTGGATCTGC 57.869 61.111 0.00 0.00 44.04 4.26
66 67 8.166066 CGTTTTATGAATTGACATAGACAACGA 58.834 33.333 14.92 0.00 40.23 3.85
68 69 7.218204 GCCGTTTTATGAATTGACATAGACAAC 59.782 37.037 0.00 0.00 34.80 3.32
75 76 4.142182 CCCTGCCGTTTTATGAATTGACAT 60.142 41.667 0.00 0.00 0.00 3.06
79 80 2.495669 ACCCCTGCCGTTTTATGAATTG 59.504 45.455 0.00 0.00 0.00 2.32
82 83 1.202952 ACACCCCTGCCGTTTTATGAA 60.203 47.619 0.00 0.00 0.00 2.57
84 85 2.116827 TACACCCCTGCCGTTTTATG 57.883 50.000 0.00 0.00 0.00 1.90
85 86 4.103469 TCATATACACCCCTGCCGTTTTAT 59.897 41.667 0.00 0.00 0.00 1.40
86 87 3.455177 TCATATACACCCCTGCCGTTTTA 59.545 43.478 0.00 0.00 0.00 1.52
90 93 1.502690 TTCATATACACCCCTGCCGT 58.497 50.000 0.00 0.00 0.00 5.68
91 94 2.631160 TTTCATATACACCCCTGCCG 57.369 50.000 0.00 0.00 0.00 5.69
96 99 2.876550 GACGGCTTTTCATATACACCCC 59.123 50.000 0.00 0.00 0.00 4.95
101 104 3.365832 TCGTCGACGGCTTTTCATATAC 58.634 45.455 35.05 0.00 40.29 1.47
105 108 0.999406 CATCGTCGACGGCTTTTCAT 59.001 50.000 35.05 18.05 40.29 2.57
108 111 1.393539 CAATCATCGTCGACGGCTTTT 59.606 47.619 35.05 21.14 40.29 2.27
112 115 0.597637 ATCCAATCATCGTCGACGGC 60.598 55.000 35.05 0.00 40.29 5.68
113 116 1.269051 TGATCCAATCATCGTCGACGG 60.269 52.381 35.05 21.47 35.60 4.79
116 119 1.269778 GGCTGATCCAATCATCGTCGA 60.270 52.381 0.00 0.00 38.85 4.20
127 130 2.747460 GCTGCGTTGGCTGATCCA 60.747 61.111 0.00 0.00 44.85 3.41
128 131 3.869272 CGCTGCGTTGGCTGATCC 61.869 66.667 14.93 0.00 40.22 3.36
129 132 4.527157 GCGCTGCGTTGGCTGATC 62.527 66.667 24.04 0.00 40.22 2.92
138 141 3.952675 CAACAAGTGGCGCTGCGT 61.953 61.111 24.04 0.00 0.00 5.24
142 145 1.103398 AAGAAGCAACAAGTGGCGCT 61.103 50.000 7.64 0.00 35.90 5.92
145 148 2.666619 CGATCAAGAAGCAACAAGTGGC 60.667 50.000 0.00 0.00 0.00 5.01
152 155 2.589014 CAAAGCCGATCAAGAAGCAAC 58.411 47.619 0.00 0.00 0.00 4.17
154 157 1.167851 CCAAAGCCGATCAAGAAGCA 58.832 50.000 0.00 0.00 0.00 3.91
165 168 1.339610 TGACAATTTGGTCCAAAGCCG 59.660 47.619 21.31 14.13 36.76 5.52
167 170 3.451141 TGTGACAATTTGGTCCAAAGC 57.549 42.857 21.31 11.46 36.76 3.51
168 171 4.990426 GGAATGTGACAATTTGGTCCAAAG 59.010 41.667 21.31 11.81 36.76 2.77
248 251 3.699038 GGCCCAAGAACTTGCACATAATA 59.301 43.478 8.81 0.00 39.16 0.98
252 257 0.178953 AGGCCCAAGAACTTGCACAT 60.179 50.000 0.00 0.00 39.16 3.21
254 259 1.109323 ACAGGCCCAAGAACTTGCAC 61.109 55.000 0.00 3.47 39.16 4.57
263 268 0.829990 AAAAACACCACAGGCCCAAG 59.170 50.000 0.00 0.00 0.00 3.61
264 269 2.160721 TAAAAACACCACAGGCCCAA 57.839 45.000 0.00 0.00 0.00 4.12
278 283 8.258007 ACGGACATCTTGATAGTGAGATAAAAA 58.742 33.333 0.00 0.00 31.64 1.94
284 289 3.181486 GCACGGACATCTTGATAGTGAGA 60.181 47.826 0.00 0.00 0.00 3.27
292 297 0.804364 GCAATGCACGGACATCTTGA 59.196 50.000 0.00 0.00 0.00 3.02
346 354 3.440173 CCTACATGGGTCAATCACAACAC 59.560 47.826 0.00 0.00 31.12 3.32
365 373 7.924541 AGTTTTTACACATGGGATTACTCCTA 58.075 34.615 0.00 0.00 41.74 2.94
411 419 4.679662 TCTCGAGATACCATTTTTCCGAC 58.320 43.478 12.08 0.00 0.00 4.79
498 510 1.690633 ATCTGCCCAGTCCGACCAT 60.691 57.895 0.00 0.00 0.00 3.55
513 525 1.453235 CGTCCATCCCCATGCATCT 59.547 57.895 0.00 0.00 0.00 2.90
516 528 4.504596 GCCGTCCATCCCCATGCA 62.505 66.667 0.00 0.00 0.00 3.96
551 563 2.308570 TGGAACAATCTAGCATGGTGGT 59.691 45.455 7.89 0.00 31.92 4.16
599 611 3.455910 TCCTTATCTCCCACAACCTCATG 59.544 47.826 0.00 0.00 0.00 3.07
655 667 7.624360 TTTACAAAAGATATCCGCACATCTT 57.376 32.000 0.00 0.00 42.03 2.40
659 671 7.598278 ACAATTTTACAAAAGATATCCGCACA 58.402 30.769 0.00 0.00 0.00 4.57
718 730 5.169295 GCCATCTTGTAATATAGACCGTCC 58.831 45.833 0.00 0.00 0.00 4.79
744 756 3.490933 CCGAGTTCGTGATGATGGTATGT 60.491 47.826 0.48 0.00 37.74 2.29
747 759 1.202371 GCCGAGTTCGTGATGATGGTA 60.202 52.381 0.48 0.00 37.74 3.25
759 771 8.189460 TCTCTACTCTTATAAAAAGCCGAGTTC 58.811 37.037 7.78 0.00 34.06 3.01
822 838 7.705325 GGAGAGCAAGTAGACGTATTTTTATGA 59.295 37.037 0.00 0.00 0.00 2.15
1300 1332 1.142060 ACACGATGAACTCCAAACCCA 59.858 47.619 0.00 0.00 0.00 4.51
1306 1338 0.388520 CTGCGACACGATGAACTCCA 60.389 55.000 0.00 0.00 0.00 3.86
1346 1378 1.479730 AGAATCGACCCGAAACCTACC 59.520 52.381 0.00 0.00 39.99 3.18
1355 1387 1.067846 TGTTCTCACAGAATCGACCCG 60.068 52.381 0.00 0.00 36.50 5.28
1411 1446 2.739292 CGACAAACGAAGAGTCCTGAA 58.261 47.619 0.00 0.00 45.77 3.02
1412 1447 2.417339 CGACAAACGAAGAGTCCTGA 57.583 50.000 0.00 0.00 45.77 3.86
1454 1489 1.137404 CAGGCATTACAAGCACGCC 59.863 57.895 0.00 0.00 43.31 5.68
1472 1507 1.067821 AGTAGAAGCGCACATCTAGCC 59.932 52.381 11.47 4.04 27.18 3.93
1581 1616 1.587547 GCAGCCAAGCTACATCCTAC 58.412 55.000 0.00 0.00 36.40 3.18
1634 1669 9.962759 GATTTCATGCTCAACAAAATTACAATC 57.037 29.630 0.00 0.00 0.00 2.67
1662 1700 1.014352 ACCGGTAGCGAAATGAATGC 58.986 50.000 17.33 0.00 0.00 3.56
1663 1701 4.569162 TCTTAACCGGTAGCGAAATGAATG 59.431 41.667 17.33 0.00 0.00 2.67
1664 1702 4.761975 TCTTAACCGGTAGCGAAATGAAT 58.238 39.130 17.33 0.00 0.00 2.57
1693 1731 8.788813 CAAATCAAGTTACAAGCGCTATTTAAG 58.211 33.333 12.05 0.00 0.00 1.85
1694 1732 8.293867 ACAAATCAAGTTACAAGCGCTATTTAA 58.706 29.630 12.05 5.72 0.00 1.52
1695 1733 7.748683 CACAAATCAAGTTACAAGCGCTATTTA 59.251 33.333 12.05 0.00 0.00 1.40
1696 1734 6.582295 CACAAATCAAGTTACAAGCGCTATTT 59.418 34.615 12.05 6.77 0.00 1.40
1772 1810 8.930846 AGGCTATCAAACTATGCATTAGAAAT 57.069 30.769 3.54 0.00 0.00 2.17
1773 1811 8.213679 AGAGGCTATCAAACTATGCATTAGAAA 58.786 33.333 3.54 0.00 0.00 2.52
1774 1812 7.658982 CAGAGGCTATCAAACTATGCATTAGAA 59.341 37.037 3.54 0.00 0.00 2.10
1786 1824 3.539604 AGCACATCAGAGGCTATCAAAC 58.460 45.455 0.00 0.00 35.82 2.93
1823 1861 7.719193 TCTTTGTTCTGGTCTGAAATGTAATCA 59.281 33.333 0.00 0.00 0.00 2.57
1913 1951 2.493675 GGAGAAATCAAAAGGACTGGGC 59.506 50.000 0.00 0.00 0.00 5.36
2050 2089 4.952460 AGAACTGCTGAAATGCACAAAAT 58.048 34.783 0.00 0.00 38.12 1.82
2109 2148 6.270927 CCTTATAGATGGATCCTTCAGGTGAA 59.729 42.308 25.15 12.70 36.34 3.18
2351 2390 5.537188 TGAGCATAAATTTTGGGTGACAAC 58.463 37.500 0.00 0.00 39.19 3.32
2575 2614 5.480422 TGTAATCAGGTATCCATACTCGCAT 59.520 40.000 0.00 0.00 33.81 4.73
2635 2674 3.371965 TCAGGGTCATTCCAGTACCTAC 58.628 50.000 0.00 0.00 38.11 3.18
2681 2720 5.491070 TCTACTGGGAAGTTCAATGACATG 58.509 41.667 5.01 0.00 0.00 3.21
2724 2763 5.407407 TCAGTTTCTTGAGGTCCAGATAC 57.593 43.478 0.00 0.00 0.00 2.24
2753 2792 0.683973 ACTCATCATCATCCTCGCCC 59.316 55.000 0.00 0.00 0.00 6.13
2798 2837 2.368439 GCAATTACCTCTGCATCACCA 58.632 47.619 0.00 0.00 38.48 4.17
2996 3066 6.404734 GGAGCATTCCTTCGTCACAAAAATAT 60.405 38.462 0.00 0.00 40.58 1.28
3002 3072 1.610624 GGGAGCATTCCTTCGTCACAA 60.611 52.381 0.00 0.00 43.49 3.33
3009 3079 0.990818 AGGGAGGGGAGCATTCCTTC 60.991 60.000 0.00 0.00 43.49 3.46
3115 3188 4.202141 TGGACAATTTGAGAGTTGCCTTTG 60.202 41.667 2.79 0.00 0.00 2.77
3127 3200 8.642935 TCCATGTAAATTACTGGACAATTTGA 57.357 30.769 15.45 0.00 36.51 2.69
3134 3207 6.591935 TCAGGATCCATGTAAATTACTGGAC 58.408 40.000 15.82 14.71 38.16 4.02
3138 3211 8.917088 CCATTTTCAGGATCCATGTAAATTACT 58.083 33.333 15.82 0.00 28.76 2.24
3147 3220 2.961062 GGACCCATTTTCAGGATCCATG 59.039 50.000 15.82 8.26 0.00 3.66
3148 3221 2.586838 TGGACCCATTTTCAGGATCCAT 59.413 45.455 15.82 0.00 32.11 3.41
3264 3337 3.319122 GTGCAAAGTTCAGTGGAATTCCT 59.681 43.478 24.73 2.99 35.05 3.36
3299 3372 7.385205 GCCAATAAAAGATCGATGCTAGAAGTA 59.615 37.037 0.54 0.00 0.00 2.24
3312 3385 2.223572 CCACAGGCGCCAATAAAAGATC 60.224 50.000 31.54 0.00 0.00 2.75
3323 3396 0.464452 ATAGTTCTACCACAGGCGCC 59.536 55.000 21.89 21.89 0.00 6.53
3330 3403 7.321153 TGTTCAAGCTTAGATAGTTCTACCAC 58.679 38.462 0.00 0.00 34.15 4.16
3331 3404 7.363880 CCTGTTCAAGCTTAGATAGTTCTACCA 60.364 40.741 0.00 0.00 34.15 3.25
3332 3405 6.981559 CCTGTTCAAGCTTAGATAGTTCTACC 59.018 42.308 0.00 0.00 34.15 3.18
3333 3406 6.981559 CCCTGTTCAAGCTTAGATAGTTCTAC 59.018 42.308 0.00 0.00 34.15 2.59
3334 3407 6.407074 GCCCTGTTCAAGCTTAGATAGTTCTA 60.407 42.308 0.00 0.00 33.17 2.10
3335 3408 5.627968 GCCCTGTTCAAGCTTAGATAGTTCT 60.628 44.000 0.00 0.00 35.90 3.01
3336 3409 4.572795 GCCCTGTTCAAGCTTAGATAGTTC 59.427 45.833 0.00 0.00 0.00 3.01
3337 3410 4.518249 GCCCTGTTCAAGCTTAGATAGTT 58.482 43.478 0.00 0.00 0.00 2.24
3338 3411 3.118223 GGCCCTGTTCAAGCTTAGATAGT 60.118 47.826 0.00 0.00 0.00 2.12
3339 3412 3.118261 TGGCCCTGTTCAAGCTTAGATAG 60.118 47.826 0.00 0.00 0.00 2.08
3340 3413 2.843730 TGGCCCTGTTCAAGCTTAGATA 59.156 45.455 0.00 0.00 0.00 1.98
3341 3414 1.635487 TGGCCCTGTTCAAGCTTAGAT 59.365 47.619 0.00 0.00 0.00 1.98
3342 3415 1.064003 TGGCCCTGTTCAAGCTTAGA 58.936 50.000 0.00 0.00 0.00 2.10
3343 3416 2.134789 ATGGCCCTGTTCAAGCTTAG 57.865 50.000 0.00 0.00 0.00 2.18
3344 3417 2.603075 AATGGCCCTGTTCAAGCTTA 57.397 45.000 0.00 0.00 0.00 3.09
3345 3418 1.620323 GAAATGGCCCTGTTCAAGCTT 59.380 47.619 0.00 0.00 0.00 3.74
3346 3419 1.203100 AGAAATGGCCCTGTTCAAGCT 60.203 47.619 0.00 0.00 0.00 3.74
3347 3420 1.203287 GAGAAATGGCCCTGTTCAAGC 59.797 52.381 0.00 0.00 0.00 4.01
3348 3421 2.229784 GTGAGAAATGGCCCTGTTCAAG 59.770 50.000 0.00 0.00 0.00 3.02
3349 3422 2.158475 AGTGAGAAATGGCCCTGTTCAA 60.158 45.455 0.00 0.00 0.00 2.69
3350 3423 1.425066 AGTGAGAAATGGCCCTGTTCA 59.575 47.619 0.00 0.00 0.00 3.18
3351 3424 1.815003 CAGTGAGAAATGGCCCTGTTC 59.185 52.381 0.00 0.55 0.00 3.18
3352 3425 1.548582 CCAGTGAGAAATGGCCCTGTT 60.549 52.381 0.00 0.00 0.00 3.16
3353 3426 0.038744 CCAGTGAGAAATGGCCCTGT 59.961 55.000 0.00 0.00 0.00 4.00
3354 3427 0.329261 TCCAGTGAGAAATGGCCCTG 59.671 55.000 0.00 0.00 36.47 4.45
3355 3428 1.302907 ATCCAGTGAGAAATGGCCCT 58.697 50.000 0.00 0.00 36.47 5.19
3356 3429 2.576615 GTATCCAGTGAGAAATGGCCC 58.423 52.381 0.00 0.00 36.47 5.80
3357 3430 2.092429 TGGTATCCAGTGAGAAATGGCC 60.092 50.000 0.00 0.00 36.47 5.36
3358 3431 3.281727 TGGTATCCAGTGAGAAATGGC 57.718 47.619 0.00 0.00 36.47 4.40
3359 3432 4.999950 GCTATGGTATCCAGTGAGAAATGG 59.000 45.833 0.00 0.00 36.75 3.16
3360 3433 5.862845 AGCTATGGTATCCAGTGAGAAATG 58.137 41.667 0.00 0.00 36.75 2.32
3361 3434 6.506538 AAGCTATGGTATCCAGTGAGAAAT 57.493 37.500 0.00 0.00 36.75 2.17
3362 3435 5.957771 AAGCTATGGTATCCAGTGAGAAA 57.042 39.130 0.00 0.00 36.75 2.52
3363 3436 5.189736 ACAAAGCTATGGTATCCAGTGAGAA 59.810 40.000 0.00 0.00 36.75 2.87
3364 3437 4.716784 ACAAAGCTATGGTATCCAGTGAGA 59.283 41.667 0.00 0.00 36.75 3.27
3365 3438 5.028549 ACAAAGCTATGGTATCCAGTGAG 57.971 43.478 0.00 0.00 36.75 3.51
3366 3439 5.435686 AACAAAGCTATGGTATCCAGTGA 57.564 39.130 0.00 0.00 36.75 3.41
3367 3440 6.375455 AGAAAACAAAGCTATGGTATCCAGTG 59.625 38.462 0.00 0.00 36.75 3.66
3368 3441 6.485171 AGAAAACAAAGCTATGGTATCCAGT 58.515 36.000 0.00 0.00 36.75 4.00
3369 3442 7.396540 AAGAAAACAAAGCTATGGTATCCAG 57.603 36.000 0.00 0.00 36.75 3.86
3370 3443 7.669722 AGAAAGAAAACAAAGCTATGGTATCCA 59.330 33.333 0.00 0.00 38.19 3.41
3371 3444 8.056407 AGAAAGAAAACAAAGCTATGGTATCC 57.944 34.615 0.00 0.00 0.00 2.59
3390 3463 9.449719 GTTCAGTGGAATTCCTATTTAGAAAGA 57.550 33.333 24.73 6.19 35.05 2.52
3391 3464 9.454859 AGTTCAGTGGAATTCCTATTTAGAAAG 57.545 33.333 24.73 4.16 35.05 2.62
3392 3465 9.807921 AAGTTCAGTGGAATTCCTATTTAGAAA 57.192 29.630 24.73 6.38 35.05 2.52
3393 3466 9.807921 AAAGTTCAGTGGAATTCCTATTTAGAA 57.192 29.630 24.73 15.78 35.05 2.10
3394 3467 9.231297 CAAAGTTCAGTGGAATTCCTATTTAGA 57.769 33.333 24.73 11.28 35.05 2.10
3395 3468 7.970614 GCAAAGTTCAGTGGAATTCCTATTTAG 59.029 37.037 24.73 9.29 35.05 1.85
3396 3469 7.450014 TGCAAAGTTCAGTGGAATTCCTATTTA 59.550 33.333 24.73 1.39 35.05 1.40
3397 3470 6.267471 TGCAAAGTTCAGTGGAATTCCTATTT 59.733 34.615 24.73 11.64 35.05 1.40
3398 3471 5.774690 TGCAAAGTTCAGTGGAATTCCTATT 59.225 36.000 24.73 7.97 35.05 1.73
3399 3472 5.183904 GTGCAAAGTTCAGTGGAATTCCTAT 59.816 40.000 24.73 10.82 35.05 2.57
3400 3473 4.518970 GTGCAAAGTTCAGTGGAATTCCTA 59.481 41.667 24.73 9.10 35.05 2.94
3401 3474 3.319122 GTGCAAAGTTCAGTGGAATTCCT 59.681 43.478 24.73 2.99 35.05 3.36
3402 3475 3.319122 AGTGCAAAGTTCAGTGGAATTCC 59.681 43.478 18.17 18.17 35.05 3.01
3403 3476 4.574599 AGTGCAAAGTTCAGTGGAATTC 57.425 40.909 0.00 0.00 35.05 2.17
3404 3477 6.463995 TTTAGTGCAAAGTTCAGTGGAATT 57.536 33.333 0.00 0.00 35.05 2.17
3405 3478 6.040842 ACATTTAGTGCAAAGTTCAGTGGAAT 59.959 34.615 0.00 0.00 35.05 3.01
3406 3479 5.359576 ACATTTAGTGCAAAGTTCAGTGGAA 59.640 36.000 0.00 0.00 0.00 3.53
3407 3480 4.887071 ACATTTAGTGCAAAGTTCAGTGGA 59.113 37.500 0.00 0.00 0.00 4.02
3408 3481 4.977963 CACATTTAGTGCAAAGTTCAGTGG 59.022 41.667 0.00 0.00 42.15 4.00
3422 3495 9.331282 GATGCTAGAAGTAAATCCACATTTAGT 57.669 33.333 0.00 0.00 39.06 2.24
3423 3496 8.491152 CGATGCTAGAAGTAAATCCACATTTAG 58.509 37.037 0.00 0.00 35.52 1.85
3424 3497 8.201464 TCGATGCTAGAAGTAAATCCACATTTA 58.799 33.333 0.00 0.00 33.95 1.40
3425 3498 7.047891 TCGATGCTAGAAGTAAATCCACATTT 58.952 34.615 0.00 0.00 36.18 2.32
3426 3499 6.582636 TCGATGCTAGAAGTAAATCCACATT 58.417 36.000 0.00 0.00 0.00 2.71
3427 3500 6.161855 TCGATGCTAGAAGTAAATCCACAT 57.838 37.500 0.00 0.00 0.00 3.21
3428 3501 5.592104 TCGATGCTAGAAGTAAATCCACA 57.408 39.130 0.00 0.00 0.00 4.17
3429 3502 6.451393 AGATCGATGCTAGAAGTAAATCCAC 58.549 40.000 0.54 0.00 0.00 4.02
3430 3503 6.656632 AGATCGATGCTAGAAGTAAATCCA 57.343 37.500 0.54 0.00 0.00 3.41
3431 3504 7.954788 AAAGATCGATGCTAGAAGTAAATCC 57.045 36.000 0.54 0.00 0.00 3.01
3435 3508 9.261180 CCAATAAAAGATCGATGCTAGAAGTAA 57.739 33.333 0.54 0.00 0.00 2.24
3436 3509 7.385205 GCCAATAAAAGATCGATGCTAGAAGTA 59.615 37.037 0.54 0.00 0.00 2.24
3437 3510 6.203723 GCCAATAAAAGATCGATGCTAGAAGT 59.796 38.462 0.54 0.00 0.00 3.01
3438 3511 6.597614 GCCAATAAAAGATCGATGCTAGAAG 58.402 40.000 0.54 0.00 0.00 2.85
3439 3512 5.177511 CGCCAATAAAAGATCGATGCTAGAA 59.822 40.000 0.54 0.00 0.00 2.10
3440 3513 4.686091 CGCCAATAAAAGATCGATGCTAGA 59.314 41.667 0.54 0.00 0.00 2.43
3441 3514 4.667668 GCGCCAATAAAAGATCGATGCTAG 60.668 45.833 0.54 0.00 0.00 3.42
3442 3515 3.186409 GCGCCAATAAAAGATCGATGCTA 59.814 43.478 0.54 0.00 0.00 3.49
3443 3516 2.031682 GCGCCAATAAAAGATCGATGCT 60.032 45.455 0.54 0.00 0.00 3.79
3444 3517 2.310577 GCGCCAATAAAAGATCGATGC 58.689 47.619 0.54 0.00 0.00 3.91
3445 3518 2.549754 AGGCGCCAATAAAAGATCGATG 59.450 45.455 31.54 0.00 0.00 3.84
3446 3519 2.549754 CAGGCGCCAATAAAAGATCGAT 59.450 45.455 31.54 0.00 0.00 3.59
3447 3520 1.939934 CAGGCGCCAATAAAAGATCGA 59.060 47.619 31.54 0.00 0.00 3.59
3448 3521 1.939934 TCAGGCGCCAATAAAAGATCG 59.060 47.619 31.54 1.54 0.00 3.69
3449 3522 2.291741 CCTCAGGCGCCAATAAAAGATC 59.708 50.000 31.54 0.00 0.00 2.75
3450 3523 2.092429 TCCTCAGGCGCCAATAAAAGAT 60.092 45.455 31.54 0.00 0.00 2.40
3451 3524 1.280710 TCCTCAGGCGCCAATAAAAGA 59.719 47.619 31.54 12.70 0.00 2.52
3452 3525 1.750193 TCCTCAGGCGCCAATAAAAG 58.250 50.000 31.54 15.14 0.00 2.27
3453 3526 2.208132 TTCCTCAGGCGCCAATAAAA 57.792 45.000 31.54 14.29 0.00 1.52
3454 3527 2.208132 TTTCCTCAGGCGCCAATAAA 57.792 45.000 31.54 17.60 0.00 1.40
3455 3528 2.435372 ATTTCCTCAGGCGCCAATAA 57.565 45.000 31.54 13.63 0.00 1.40
3456 3529 3.327757 AGATATTTCCTCAGGCGCCAATA 59.672 43.478 31.54 21.68 0.00 1.90
3457 3530 2.107204 AGATATTTCCTCAGGCGCCAAT 59.893 45.455 31.54 20.16 0.00 3.16
3458 3531 1.490490 AGATATTTCCTCAGGCGCCAA 59.510 47.619 31.54 15.79 0.00 4.52
3459 3532 1.131638 AGATATTTCCTCAGGCGCCA 58.868 50.000 31.54 7.98 0.00 5.69
3460 3533 3.055819 TCATAGATATTTCCTCAGGCGCC 60.056 47.826 21.89 21.89 0.00 6.53
3461 3534 4.193826 TCATAGATATTTCCTCAGGCGC 57.806 45.455 0.00 0.00 0.00 6.53
3462 3535 7.173907 ACAATTTCATAGATATTTCCTCAGGCG 59.826 37.037 0.00 0.00 0.00 5.52
3463 3536 8.401490 ACAATTTCATAGATATTTCCTCAGGC 57.599 34.615 0.00 0.00 0.00 4.85
3531 3606 3.808728 CTTTCTTCAGACCCTGTTGTCA 58.191 45.455 0.00 0.00 37.73 3.58
3587 3662 2.269241 GCCCTTCTTCCCTCCACG 59.731 66.667 0.00 0.00 0.00 4.94
3643 3718 7.771183 TGATTTAAGTTGACAAAAGTTCAGCT 58.229 30.769 0.00 0.00 36.21 4.24
3703 3778 9.461312 AAATGTGGAAATCTGCTACAGTATAAA 57.539 29.630 0.00 0.00 32.61 1.40
3828 3903 8.190122 CACAAAGTATATTGCTCAAATTGGCTA 58.810 33.333 7.68 1.76 33.52 3.93
3887 3962 6.969993 TGTTAATAAAGACCTTGCAAACCT 57.030 33.333 0.00 0.00 0.00 3.50
3888 3963 8.601845 AAATGTTAATAAAGACCTTGCAAACC 57.398 30.769 0.00 0.00 0.00 3.27
3893 3968 8.957466 ACTAGGAAATGTTAATAAAGACCTTGC 58.043 33.333 0.00 0.00 0.00 4.01
3958 4033 8.417780 TGAAGTGAGAACTCGTAGTAGTATAC 57.582 38.462 0.00 0.00 43.47 1.47
4025 4100 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
4026 4101 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
4027 4102 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
4028 4103 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
4029 4104 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
4056 4131 9.144298 CCAGTACTCCCTCTGTAAAGAAATATA 57.856 37.037 0.00 0.00 0.00 0.86
4064 4139 6.923670 AGATATCCAGTACTCCCTCTGTAAA 58.076 40.000 0.00 0.00 0.00 2.01
4065 4140 6.532119 AGATATCCAGTACTCCCTCTGTAA 57.468 41.667 0.00 0.00 0.00 2.41
4066 4141 6.126156 ACAAGATATCCAGTACTCCCTCTGTA 60.126 42.308 0.00 0.00 0.00 2.74
4067 4142 5.144100 CAAGATATCCAGTACTCCCTCTGT 58.856 45.833 0.00 0.00 0.00 3.41
4068 4143 5.144100 ACAAGATATCCAGTACTCCCTCTG 58.856 45.833 0.00 0.00 0.00 3.35
4069 4144 5.411103 ACAAGATATCCAGTACTCCCTCT 57.589 43.478 0.00 0.00 0.00 3.69
4070 4145 6.487299 AAACAAGATATCCAGTACTCCCTC 57.513 41.667 0.00 0.00 0.00 4.30
4071 4146 6.042208 GCTAAACAAGATATCCAGTACTCCCT 59.958 42.308 0.00 0.00 0.00 4.20
4072 4147 6.224584 GCTAAACAAGATATCCAGTACTCCC 58.775 44.000 0.00 0.00 0.00 4.30
4073 4148 5.921408 CGCTAAACAAGATATCCAGTACTCC 59.079 44.000 0.00 0.00 0.00 3.85
4074 4149 6.418226 CACGCTAAACAAGATATCCAGTACTC 59.582 42.308 0.00 0.00 0.00 2.59
4075 4150 6.127423 ACACGCTAAACAAGATATCCAGTACT 60.127 38.462 0.00 0.00 0.00 2.73
4076 4151 6.040878 ACACGCTAAACAAGATATCCAGTAC 58.959 40.000 0.00 0.00 0.00 2.73
4077 4152 6.216801 ACACGCTAAACAAGATATCCAGTA 57.783 37.500 0.00 0.00 0.00 2.74
4078 4153 5.086104 ACACGCTAAACAAGATATCCAGT 57.914 39.130 0.00 0.00 0.00 4.00
4079 4154 4.508124 GGACACGCTAAACAAGATATCCAG 59.492 45.833 0.00 0.00 0.00 3.86
4080 4155 4.439057 GGACACGCTAAACAAGATATCCA 58.561 43.478 0.00 0.00 0.00 3.41
4081 4156 3.808174 GGGACACGCTAAACAAGATATCC 59.192 47.826 0.00 0.00 0.00 2.59
4123 4198 8.141909 CCAATCAATTGCTGATAATCAACATCT 58.858 33.333 0.00 0.00 44.43 2.90
4205 4283 2.203056 AGTGCGTCAACTGCAGCA 60.203 55.556 15.27 2.09 44.21 4.41
4327 4405 8.744652 TGGTTAATTAGACAGAGAAGAGAAGAG 58.255 37.037 0.00 0.00 0.00 2.85
4328 4406 8.651589 TGGTTAATTAGACAGAGAAGAGAAGA 57.348 34.615 0.00 0.00 0.00 2.87
4329 4407 7.491048 GCTGGTTAATTAGACAGAGAAGAGAAG 59.509 40.741 17.66 0.00 32.86 2.85
4330 4408 7.039011 TGCTGGTTAATTAGACAGAGAAGAGAA 60.039 37.037 17.66 0.00 32.86 2.87
4341 4419 5.444122 GCGATTCATGCTGGTTAATTAGAC 58.556 41.667 0.00 0.00 0.00 2.59
4368 4446 0.674895 AGTTGAATGTGAGCGAGGGC 60.675 55.000 0.00 0.00 40.37 5.19
4370 4448 1.800805 ACAGTTGAATGTGAGCGAGG 58.199 50.000 0.00 0.00 30.46 4.63
4392 4470 2.547305 GCGTGCTGCGACGTTTAA 59.453 55.556 19.91 0.00 44.77 1.52
4521 4601 4.950062 GATCGATGAGCGCGGCCA 62.950 66.667 8.83 1.60 40.61 5.36
4523 4603 2.749110 TTAGGATCGATGAGCGCGGC 62.749 60.000 8.83 0.00 40.61 6.53
4524 4604 0.318699 TTTAGGATCGATGAGCGCGG 60.319 55.000 8.83 0.00 40.61 6.46
4525 4605 1.190323 GTTTTAGGATCGATGAGCGCG 59.810 52.381 0.54 0.00 40.61 6.86
4573 4654 0.861185 CACCATGCCACGATATGACG 59.139 55.000 0.00 0.00 39.31 4.35
4662 4743 6.169800 AGAAGAAGATGGACTCTTGTTAAGC 58.830 40.000 0.00 0.00 44.92 3.09
4733 4814 2.113139 CCCATATCCCCCGTGCAC 59.887 66.667 6.82 6.82 0.00 4.57
4884 4969 8.787852 AGGACTCACAAAGATTTTCTAAACATC 58.212 33.333 0.00 0.00 0.00 3.06
4887 4972 6.858478 GCAGGACTCACAAAGATTTTCTAAAC 59.142 38.462 0.00 0.00 0.00 2.01
4912 4997 1.063806 CTGAAACCGAGTTCTCGCTG 58.936 55.000 15.54 6.78 0.00 5.18
4917 5002 4.608948 AATCAGTCTGAAACCGAGTTCT 57.391 40.909 6.64 0.00 0.00 3.01
4942 5027 3.372822 CGTGCCTTTTTCTAATCGCCTTA 59.627 43.478 0.00 0.00 0.00 2.69
4952 5037 1.966451 CGCCCTCGTGCCTTTTTCT 60.966 57.895 0.00 0.00 0.00 2.52
5000 5085 2.182030 GAGGGCCGAACGAGTGAG 59.818 66.667 0.00 0.00 0.00 3.51
5001 5086 3.379445 GGAGGGCCGAACGAGTGA 61.379 66.667 0.00 0.00 0.00 3.41
5064 5149 1.228894 CCTAGATCGCCAGGGCCTA 60.229 63.158 5.28 0.00 37.98 3.93
5065 5150 2.525381 CCTAGATCGCCAGGGCCT 60.525 66.667 0.00 0.00 37.98 5.19
5067 5152 2.737830 GACCTAGATCGCCAGGGC 59.262 66.667 13.52 0.00 36.15 5.19
5070 5155 0.757188 ACTGGGACCTAGATCGCCAG 60.757 60.000 12.53 16.28 40.31 4.85
5071 5156 0.755698 GACTGGGACCTAGATCGCCA 60.756 60.000 12.53 0.00 0.00 5.69
5168 5269 0.599558 TCGATCGTCGGGACTTTGTT 59.400 50.000 15.94 0.00 40.88 2.83
5180 5282 1.332997 GGTAAGGTGATCGTCGATCGT 59.667 52.381 25.79 15.31 41.51 3.73
5235 5337 3.219281 TGCCTACGCCTCTTTTCTTTTT 58.781 40.909 0.00 0.00 0.00 1.94
5247 5351 0.455410 TTTGATGCATTGCCTACGCC 59.545 50.000 6.12 0.00 0.00 5.68
5377 5499 1.153823 CTAACTCCCACGCCGACTG 60.154 63.158 0.00 0.00 0.00 3.51
5433 5558 1.812571 CAAGGCATGGTACCTGACAAC 59.187 52.381 14.36 0.00 37.67 3.32
5437 5562 0.618458 GGTCAAGGCATGGTACCTGA 59.382 55.000 14.36 4.20 37.67 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.