Multiple sequence alignment - TraesCS5D01G303800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G303800 chr5D 100.000 5066 0 0 1 5066 399211594 399216659 0.000000e+00 9356.0
1 TraesCS5D01G303800 chr5D 85.849 106 12 3 339 441 367694815 367694710 5.360000e-20 110.0
2 TraesCS5D01G303800 chr5D 95.556 45 2 0 1491 1535 460393081 460393125 7.040000e-09 73.1
3 TraesCS5D01G303800 chr5A 93.675 3083 115 30 1724 4772 504859606 504862642 0.000000e+00 4540.0
4 TraesCS5D01G303800 chr5A 88.125 960 67 24 379 1318 504857952 504858884 0.000000e+00 1098.0
5 TraesCS5D01G303800 chr5A 85.946 925 85 27 2295 3192 81752550 81753456 0.000000e+00 946.0
6 TraesCS5D01G303800 chr5A 85.437 927 92 21 2295 3195 8489185 8488276 0.000000e+00 924.0
7 TraesCS5D01G303800 chr5A 90.773 401 22 8 1327 1726 504858948 504859334 5.810000e-144 521.0
8 TraesCS5D01G303800 chr5A 96.729 214 7 0 4853 5066 504862640 504862853 1.730000e-94 357.0
9 TraesCS5D01G303800 chr5A 81.955 133 22 2 537 667 708687015 708687147 1.490000e-20 111.0
10 TraesCS5D01G303800 chr5A 95.556 45 2 0 1491 1535 443718898 443718854 7.040000e-09 73.1
11 TraesCS5D01G303800 chr5A 97.143 35 1 0 288 322 576090558 576090592 5.480000e-05 60.2
12 TraesCS5D01G303800 chr5B 95.375 1838 65 12 2944 4772 479623248 479625074 0.000000e+00 2905.0
13 TraesCS5D01G303800 chr5B 94.566 1233 41 5 1724 2942 479621856 479623076 0.000000e+00 1882.0
14 TraesCS5D01G303800 chr5B 84.342 1405 107 40 1 1348 479619770 479621118 0.000000e+00 1271.0
15 TraesCS5D01G303800 chr5B 93.516 401 22 3 1327 1726 479621140 479621537 1.210000e-165 593.0
16 TraesCS5D01G303800 chr5B 96.602 206 7 0 4853 5058 479625072 479625277 4.860000e-90 342.0
17 TraesCS5D01G303800 chr3A 88.785 1284 116 17 2928 4198 680746082 680744814 0.000000e+00 1548.0
18 TraesCS5D01G303800 chr3A 85.417 144 15 5 910 1049 680746820 680746679 1.470000e-30 145.0
19 TraesCS5D01G303800 chr3A 89.583 48 3 2 1491 1538 684885547 684885502 5.480000e-05 60.2
20 TraesCS5D01G303800 chr1A 87.055 927 77 25 2295 3195 589575843 589574934 0.000000e+00 1007.0
21 TraesCS5D01G303800 chr1A 85.217 115 14 3 540 653 343630299 343630411 1.150000e-21 115.0
22 TraesCS5D01G303800 chr3B 86.147 924 87 25 2295 3195 802680437 802679532 0.000000e+00 959.0
23 TraesCS5D01G303800 chr3B 80.696 948 113 34 3545 4442 719436180 719435253 0.000000e+00 673.0
24 TraesCS5D01G303800 chr3B 89.623 530 34 13 2361 2872 719443793 719443267 0.000000e+00 654.0
25 TraesCS5D01G303800 chr3B 92.537 268 18 2 3280 3547 719443026 719442761 2.860000e-102 383.0
26 TraesCS5D01G303800 chr3B 97.778 90 2 0 4767 4856 723456090 723456001 6.790000e-34 156.0
27 TraesCS5D01G303800 chr3B 83.951 162 16 8 908 1069 719444553 719444402 4.090000e-31 147.0
28 TraesCS5D01G303800 chr3B 84.252 127 19 1 529 654 607818620 607818494 6.890000e-24 122.0
29 TraesCS5D01G303800 chr3B 85.849 106 12 3 339 443 659269147 659269250 5.360000e-20 110.0
30 TraesCS5D01G303800 chr3B 84.404 109 16 1 549 656 440114732 440114624 6.940000e-19 106.0
31 TraesCS5D01G303800 chr3B 94.118 68 4 0 1355 1422 719444022 719443955 2.490000e-18 104.0
32 TraesCS5D01G303800 chr3B 94.872 39 1 1 216 253 58863479 58863517 5.480000e-05 60.2
33 TraesCS5D01G303800 chr4A 85.761 927 89 25 2295 3195 526045885 526044976 0.000000e+00 941.0
34 TraesCS5D01G303800 chr4A 89.000 100 9 2 343 440 131996305 131996404 6.890000e-24 122.0
35 TraesCS5D01G303800 chr4A 82.759 116 17 3 540 653 503624783 503624669 3.230000e-17 100.0
36 TraesCS5D01G303800 chr2B 85.377 889 86 26 2295 3157 53601112 53601982 0.000000e+00 881.0
37 TraesCS5D01G303800 chr2B 97.826 46 0 1 1496 1540 41855877 41855922 1.510000e-10 78.7
38 TraesCS5D01G303800 chr2B 77.500 120 12 11 216 322 776641710 776641593 1.970000e-04 58.4
39 TraesCS5D01G303800 chr7A 84.582 921 92 28 2295 3192 71387993 71388886 0.000000e+00 869.0
40 TraesCS5D01G303800 chr6A 85.335 716 67 19 2500 3195 437541810 437541113 0.000000e+00 706.0
41 TraesCS5D01G303800 chr6A 90.260 154 14 1 4914 5066 31757573 31757420 3.090000e-47 200.0
42 TraesCS5D01G303800 chr6A 87.500 96 10 2 339 433 456770459 456770553 5.360000e-20 110.0
43 TraesCS5D01G303800 chr6A 94.872 39 2 0 216 254 609146212 609146174 1.520000e-05 62.1
44 TraesCS5D01G303800 chr1B 81.294 572 75 18 1696 2238 33988803 33989371 7.790000e-118 435.0
45 TraesCS5D01G303800 chr1B 93.878 98 5 1 4757 4854 296490607 296490703 4.090000e-31 147.0
46 TraesCS5D01G303800 chr3D 93.182 220 15 0 3280 3499 543869832 543869613 1.760000e-84 324.0
47 TraesCS5D01G303800 chr3D 86.577 149 14 5 916 1060 543871164 543871018 5.250000e-35 159.0
48 TraesCS5D01G303800 chr3D 78.448 116 22 3 540 653 17417532 17417646 7.040000e-09 73.1
49 TraesCS5D01G303800 chr3D 94.872 39 2 0 216 254 47188197 47188159 1.520000e-05 62.1
50 TraesCS5D01G303800 chr7D 79.494 356 47 14 910 1246 569559070 569558722 3.950000e-56 230.0
51 TraesCS5D01G303800 chr7D 79.202 351 46 13 910 1246 569583057 569582720 8.540000e-53 219.0
52 TraesCS5D01G303800 chr7D 100.000 88 0 0 4770 4857 406244627 406244540 4.060000e-36 163.0
53 TraesCS5D01G303800 chr7D 93.069 101 6 1 4767 4866 599718438 599718538 4.090000e-31 147.0
54 TraesCS5D01G303800 chr7D 95.652 46 2 0 1497 1542 156526953 156526998 1.960000e-09 75.0
55 TraesCS5D01G303800 chr7D 95.122 41 0 2 216 254 461123010 461122970 4.230000e-06 63.9
56 TraesCS5D01G303800 chr2A 95.876 97 4 0 4770 4866 197535054 197535150 1.890000e-34 158.0
57 TraesCS5D01G303800 chr2A 86.275 102 12 2 339 438 175466437 175466538 5.360000e-20 110.0
58 TraesCS5D01G303800 chr1D 94.231 104 4 2 4770 4872 463248113 463248215 1.890000e-34 158.0
59 TraesCS5D01G303800 chr1D 81.034 116 9 9 216 322 221878708 221878819 4.200000e-11 80.5
60 TraesCS5D01G303800 chr6D 94.845 97 5 0 4766 4862 437348220 437348316 8.780000e-33 152.0
61 TraesCS5D01G303800 chr2D 97.727 88 2 0 4767 4854 179355477 179355564 8.780000e-33 152.0
62 TraesCS5D01G303800 chr2D 87.000 100 9 4 346 442 118361846 118361748 5.360000e-20 110.0
63 TraesCS5D01G303800 chr6B 91.429 105 7 2 4756 4859 137849260 137849363 5.290000e-30 143.0
64 TraesCS5D01G303800 chr6B 94.872 39 2 0 216 254 51993038 51993000 1.520000e-05 62.1
65 TraesCS5D01G303800 chr6B 95.000 40 1 1 216 254 674192491 674192530 1.520000e-05 62.1
66 TraesCS5D01G303800 chr7B 85.047 107 13 3 339 442 750090752 750090858 6.940000e-19 106.0
67 TraesCS5D01G303800 chr7B 93.617 47 3 0 1497 1543 744301678 744301632 2.530000e-08 71.3
68 TraesCS5D01G303800 chr4B 84.259 108 16 1 335 441 582744148 582744041 2.490000e-18 104.0
69 TraesCS5D01G303800 chr4B 88.000 75 8 1 543 616 108503407 108503333 2.510000e-13 87.9
70 TraesCS5D01G303800 chr4B 94.872 39 2 0 216 254 463579200 463579162 1.520000e-05 62.1
71 TraesCS5D01G303800 chrUn 97.826 46 0 1 1496 1540 437490194 437490149 1.510000e-10 78.7
72 TraesCS5D01G303800 chr4D 93.617 47 2 1 532 578 259882645 259882600 9.100000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G303800 chr5D 399211594 399216659 5065 False 9356.0 9356 100.00000 1 5066 1 chr5D.!!$F1 5065
1 TraesCS5D01G303800 chr5A 504857952 504862853 4901 False 1629.0 4540 92.32550 379 5066 4 chr5A.!!$F4 4687
2 TraesCS5D01G303800 chr5A 81752550 81753456 906 False 946.0 946 85.94600 2295 3192 1 chr5A.!!$F1 897
3 TraesCS5D01G303800 chr5A 8488276 8489185 909 True 924.0 924 85.43700 2295 3195 1 chr5A.!!$R1 900
4 TraesCS5D01G303800 chr5B 479619770 479625277 5507 False 1398.6 2905 92.88020 1 5058 5 chr5B.!!$F1 5057
5 TraesCS5D01G303800 chr3A 680744814 680746820 2006 True 846.5 1548 87.10100 910 4198 2 chr3A.!!$R2 3288
6 TraesCS5D01G303800 chr1A 589574934 589575843 909 True 1007.0 1007 87.05500 2295 3195 1 chr1A.!!$R1 900
7 TraesCS5D01G303800 chr3B 802679532 802680437 905 True 959.0 959 86.14700 2295 3195 1 chr3B.!!$R5 900
8 TraesCS5D01G303800 chr3B 719435253 719436180 927 True 673.0 673 80.69600 3545 4442 1 chr3B.!!$R3 897
9 TraesCS5D01G303800 chr3B 719442761 719444553 1792 True 322.0 654 90.05725 908 3547 4 chr3B.!!$R6 2639
10 TraesCS5D01G303800 chr4A 526044976 526045885 909 True 941.0 941 85.76100 2295 3195 1 chr4A.!!$R2 900
11 TraesCS5D01G303800 chr2B 53601112 53601982 870 False 881.0 881 85.37700 2295 3157 1 chr2B.!!$F2 862
12 TraesCS5D01G303800 chr7A 71387993 71388886 893 False 869.0 869 84.58200 2295 3192 1 chr7A.!!$F1 897
13 TraesCS5D01G303800 chr6A 437541113 437541810 697 True 706.0 706 85.33500 2500 3195 1 chr6A.!!$R2 695
14 TraesCS5D01G303800 chr1B 33988803 33989371 568 False 435.0 435 81.29400 1696 2238 1 chr1B.!!$F1 542
15 TraesCS5D01G303800 chr3D 543869613 543871164 1551 True 241.5 324 89.87950 916 3499 2 chr3D.!!$R2 2583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 260 0.030101 TTTTGCTTCCGTGAAAGGCG 59.970 50.0 0.00 0.00 0.00 5.52 F
810 858 0.186630 AAACACGCCCCTAGGGTTTT 59.813 50.0 26.66 13.56 46.51 2.43 F
811 859 0.186630 AACACGCCCCTAGGGTTTTT 59.813 50.0 26.66 9.08 46.51 1.94 F
1425 1594 0.245539 CCTGCAAACATGGAAGCCTG 59.754 55.0 0.00 0.00 0.00 4.85 F
1959 2452 0.952010 GTTGCCCCAGCTTGCATTTG 60.952 55.0 3.40 0.00 40.80 2.32 F
2663 3198 1.143813 CCCAGGATAAGGTGCCAGAT 58.856 55.0 0.00 0.00 0.00 2.90 F
3779 5021 0.183492 TTTCTCTTGTGGTGCAGGCT 59.817 50.0 0.00 0.00 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 2428 0.250424 GCAAGCTGGGGCAACAAAAT 60.250 50.000 0.00 0.00 41.70 1.82 R
2367 2874 1.261238 GGTCCTGGCAGTAGCTCAGT 61.261 60.000 14.43 0.00 41.70 3.41 R
2663 3198 1.271543 CCCTTGACATTGACCTCAGCA 60.272 52.381 0.00 0.00 0.00 4.41 R
3169 4367 2.094957 GCAGCATTTAAGCAACGGGTAA 60.095 45.455 0.00 0.00 36.85 2.85 R
3773 5015 0.553333 ATAAGGGGGAAGAAGCCTGC 59.447 55.000 0.00 0.00 0.00 4.85 R
3838 5094 1.468736 GGCAAGCTCAGCTAAATGTGC 60.469 52.381 11.25 11.25 38.25 4.57 R
4703 6025 0.034670 AGGGAGCTTCAACATCAGCC 60.035 55.000 0.00 0.00 36.62 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.137459 CTCTCTGCTCCTCGCCGT 61.137 66.667 0.00 0.00 38.05 5.68
47 48 2.347490 GAGCGTTCCCTCCTGCAA 59.653 61.111 0.00 0.00 0.00 4.08
244 250 1.203287 GAGAGGCATGGTTTTGCTTCC 59.797 52.381 5.12 0.00 46.61 3.46
249 255 1.269517 GCATGGTTTTGCTTCCGTGAA 60.270 47.619 7.48 0.00 41.65 3.18
254 260 0.030101 TTTTGCTTCCGTGAAAGGCG 59.970 50.000 0.00 0.00 0.00 5.52
261 267 2.680913 CCGTGAAAGGCGCTCTTGG 61.681 63.158 7.64 3.03 35.55 3.61
265 271 1.541588 GTGAAAGGCGCTCTTGGAAAT 59.458 47.619 7.64 0.00 35.55 2.17
266 272 1.541147 TGAAAGGCGCTCTTGGAAATG 59.459 47.619 7.64 0.00 35.55 2.32
267 273 1.541588 GAAAGGCGCTCTTGGAAATGT 59.458 47.619 7.64 0.00 35.55 2.71
269 275 2.029838 AGGCGCTCTTGGAAATGTAG 57.970 50.000 7.64 0.00 0.00 2.74
305 311 1.202639 TCTTGCTTTCACGAGAGGCAA 60.203 47.619 18.18 18.18 39.86 4.52
322 328 0.030101 CAAGGTTTTGCTTCCGCGAA 59.970 50.000 8.23 0.00 39.65 4.70
323 329 0.958822 AAGGTTTTGCTTCCGCGAAT 59.041 45.000 8.23 0.00 39.22 3.34
326 332 1.335506 GGTTTTGCTTCCGCGAATGAA 60.336 47.619 8.23 1.09 39.22 2.57
328 334 2.783828 TTTGCTTCCGCGAATGAAAA 57.216 40.000 8.23 0.00 39.65 2.29
329 335 2.783828 TTGCTTCCGCGAATGAAAAA 57.216 40.000 8.23 0.00 39.65 1.94
358 386 1.511887 CCGCGAAAGGCACGATTTG 60.512 57.895 8.23 0.00 43.84 2.32
374 402 2.632602 TTTGGCTTTCGTGGGAGGCA 62.633 55.000 0.00 0.00 45.30 4.75
388 416 1.269448 GGAGGCACGATTTTGCTTTCA 59.731 47.619 0.00 0.00 42.56 2.69
466 494 1.268335 GCGTGCCTCTTGAAAACGAAA 60.268 47.619 0.00 0.00 36.38 3.46
467 495 2.793237 GCGTGCCTCTTGAAAACGAAAA 60.793 45.455 0.00 0.00 36.38 2.29
468 496 3.430931 CGTGCCTCTTGAAAACGAAAAA 58.569 40.909 0.00 0.00 36.38 1.94
512 540 3.965379 TCGTTAGAGGCATGGTTTGTA 57.035 42.857 0.00 0.00 0.00 2.41
513 541 4.274602 TCGTTAGAGGCATGGTTTGTAA 57.725 40.909 0.00 0.00 0.00 2.41
517 545 0.817654 GAGGCATGGTTTGTAAGCCC 59.182 55.000 0.00 0.00 46.35 5.19
518 546 0.409484 AGGCATGGTTTGTAAGCCCT 59.591 50.000 0.00 0.00 46.35 5.19
519 547 1.203174 AGGCATGGTTTGTAAGCCCTT 60.203 47.619 0.00 0.00 46.35 3.95
595 627 3.565764 TCTCGATGCAAGGAATCCAAT 57.434 42.857 0.61 0.00 0.00 3.16
599 631 4.971939 TCGATGCAAGGAATCCAATGATA 58.028 39.130 0.61 0.00 0.00 2.15
602 634 5.916883 CGATGCAAGGAATCCAATGATAAAC 59.083 40.000 0.61 0.00 0.00 2.01
603 635 5.596836 TGCAAGGAATCCAATGATAAACC 57.403 39.130 0.61 0.00 0.00 3.27
604 636 4.097741 TGCAAGGAATCCAATGATAAACCG 59.902 41.667 0.61 0.00 0.00 4.44
621 654 3.165559 CGGCTCGAGATTTAGACGG 57.834 57.895 18.75 0.00 40.62 4.79
689 727 2.031420 TCCTAGGTCGCGATAAATGACG 60.031 50.000 14.06 0.00 33.45 4.35
690 728 2.287427 CCTAGGTCGCGATAAATGACGT 60.287 50.000 14.06 1.76 35.24 4.34
692 730 3.637998 AGGTCGCGATAAATGACGTAT 57.362 42.857 14.06 0.00 33.45 3.06
694 732 2.160013 GGTCGCGATAAATGACGTATGC 60.160 50.000 14.06 0.00 33.45 3.14
774 821 2.829003 TGGTTTTTGCACGCCCGA 60.829 55.556 0.00 0.00 0.00 5.14
807 855 1.712000 AACAAACACGCCCCTAGGGT 61.712 55.000 26.66 5.18 46.51 4.34
808 856 1.074248 CAAACACGCCCCTAGGGTT 59.926 57.895 26.66 10.93 46.51 4.11
809 857 0.538746 CAAACACGCCCCTAGGGTTT 60.539 55.000 26.66 16.37 46.51 3.27
810 858 0.186630 AAACACGCCCCTAGGGTTTT 59.813 50.000 26.66 13.56 46.51 2.43
811 859 0.186630 AACACGCCCCTAGGGTTTTT 59.813 50.000 26.66 9.08 46.51 1.94
812 860 0.251033 ACACGCCCCTAGGGTTTTTC 60.251 55.000 26.66 8.83 46.51 2.29
819 867 3.007614 GCCCCTAGGGTTTTTCTTTTTCC 59.992 47.826 26.66 0.00 46.51 3.13
872 920 4.693915 CCCTCCCCACTTCCCCCA 62.694 72.222 0.00 0.00 0.00 4.96
881 929 1.542375 ACTTCCCCCACTGCCATCT 60.542 57.895 0.00 0.00 0.00 2.90
1300 1409 2.210116 GATTGTGATGATTACGCCCGT 58.790 47.619 0.00 0.00 0.00 5.28
1381 1550 2.556622 AGAACCTAAACGTGGGCATTTG 59.443 45.455 0.00 0.00 0.00 2.32
1389 1558 1.822371 ACGTGGGCATTTGGTTAATCC 59.178 47.619 0.00 0.00 0.00 3.01
1425 1594 0.245539 CCTGCAAACATGGAAGCCTG 59.754 55.000 0.00 0.00 0.00 4.85
1451 1620 1.301677 GGCAGGAAGAAGGAGCAACG 61.302 60.000 0.00 0.00 0.00 4.10
1463 1632 1.456705 AGCAACGGGGCTGGAAAAA 60.457 52.632 2.04 0.00 43.89 1.94
1509 1678 5.622770 AATACCTTAGTTCAAAACTGCGG 57.377 39.130 2.65 0.00 42.84 5.69
1583 1752 4.081087 TCTCTAACTTGCCATAGTTCCCAC 60.081 45.833 0.00 0.00 39.08 4.61
1655 1824 5.005740 TCTCAATCAACACCTCCAATCAAG 58.994 41.667 0.00 0.00 0.00 3.02
1694 1863 3.200165 AGAAAACCGGAGAATAGAAGGGG 59.800 47.826 9.46 0.00 0.00 4.79
1881 2371 1.118838 AGTCTGGAGAGCTGTATGCC 58.881 55.000 0.00 0.00 44.23 4.40
1917 2407 3.041946 AGGAAGCTACCACCTATTCCAG 58.958 50.000 5.18 0.00 41.56 3.86
1935 2428 5.357742 TCCAGCTGAGACAATATTTAGCA 57.642 39.130 17.39 0.00 33.81 3.49
1959 2452 0.952010 GTTGCCCCAGCTTGCATTTG 60.952 55.000 3.40 0.00 40.80 2.32
1972 2465 2.778299 TGCATTTGAAGAAGTAGCGGT 58.222 42.857 0.00 0.00 0.00 5.68
2028 2521 8.878769 GCCAAGTTAAGAGATTTGTTTCAAAAA 58.121 29.630 0.00 0.00 0.00 1.94
2039 2532 9.844257 AGATTTGTTTCAAAAATTACCCATGAA 57.156 25.926 0.00 0.00 0.00 2.57
2049 2542 8.987890 CAAAAATTACCCATGAACCACTTTTAG 58.012 33.333 0.00 0.00 0.00 1.85
2187 2683 9.509855 CACTGATCTGTTCTCTGTACTATTTAC 57.490 37.037 1.95 0.00 0.00 2.01
2239 2735 3.881688 GACATGTCTTCCATCCATTCCTG 59.118 47.826 18.83 0.00 0.00 3.86
2400 2907 2.437281 CCAGGACCTCGTCTACTACCTA 59.563 54.545 0.00 0.00 32.47 3.08
2548 3078 8.597167 TCCATTTATGCAGCTGTCTAATAGTAT 58.403 33.333 16.64 1.83 0.00 2.12
2663 3198 1.143813 CCCAGGATAAGGTGCCAGAT 58.856 55.000 0.00 0.00 0.00 2.90
3057 4251 6.327934 GCAGTGTCTTGCAGAATCAAATTAT 58.672 36.000 0.00 0.00 43.53 1.28
3086 4281 7.665559 TGCTACCTAACAACTTCTGATGAATTT 59.334 33.333 0.00 0.00 0.00 1.82
3088 4283 7.219484 ACCTAACAACTTCTGATGAATTTGG 57.781 36.000 11.53 2.66 43.04 3.28
3169 4367 5.789643 ATTGTTGCTTTTGTGGATACTGT 57.210 34.783 0.00 0.00 37.61 3.55
3543 4785 3.784701 ACACTAAGCTACATCGAGGTG 57.215 47.619 13.92 4.17 0.00 4.00
3557 4799 4.252971 TCGAGGTGACTAAGTTTTCTGG 57.747 45.455 0.00 0.00 44.43 3.86
3674 4916 3.379445 TTCACCCGAGCTCCCGTC 61.379 66.667 8.47 0.00 0.00 4.79
3730 4972 1.396653 AAGCAGCTTCATGGGTATGC 58.603 50.000 0.21 0.00 34.21 3.14
3732 4974 1.770658 AGCAGCTTCATGGGTATGCTA 59.229 47.619 12.63 0.00 41.90 3.49
3773 5015 7.175641 AGAGTTTATGGATTTTCTCTTGTGGTG 59.824 37.037 0.00 0.00 0.00 4.17
3778 5020 1.032014 TTTTCTCTTGTGGTGCAGGC 58.968 50.000 0.00 0.00 0.00 4.85
3779 5021 0.183492 TTTCTCTTGTGGTGCAGGCT 59.817 50.000 0.00 0.00 0.00 4.58
3780 5022 0.183492 TTCTCTTGTGGTGCAGGCTT 59.817 50.000 0.00 0.00 0.00 4.35
3838 5094 7.630242 TGAGTTTAATGAAGATAGCTTTGGG 57.370 36.000 0.00 0.00 33.61 4.12
3887 5143 5.629079 AGATCTTTTGCTTTTCCTAACCG 57.371 39.130 0.00 0.00 0.00 4.44
3999 5258 2.710724 AAGACGACGGTGGTTCCAGC 62.711 60.000 10.56 10.56 35.57 4.85
4044 5303 2.846193 CGGAGAAAACACCAGAAAGGA 58.154 47.619 0.00 0.00 41.22 3.36
4083 5342 6.261118 GCATTAATTCAGACCTGACAATGAC 58.739 40.000 20.70 13.40 39.66 3.06
4162 5422 0.667993 ACTGAACCAATTGTGCACCG 59.332 50.000 15.69 0.00 0.00 4.94
4260 5557 0.106918 TGCCTGTGTTTTCCGGTTCT 60.107 50.000 0.00 0.00 0.00 3.01
4264 5561 2.561569 CTGTGTTTTCCGGTTCTGACT 58.438 47.619 0.00 0.00 0.00 3.41
4278 5575 5.066593 GGTTCTGACTCCTTTGAATCTGTT 58.933 41.667 0.00 0.00 0.00 3.16
4279 5576 6.231211 GGTTCTGACTCCTTTGAATCTGTTA 58.769 40.000 0.00 0.00 0.00 2.41
4377 5674 2.098607 TCCAACATCGATCTCCACGTAC 59.901 50.000 0.00 0.00 0.00 3.67
4404 5712 3.135530 AGTCTGGCCTTAATCCTGATCAC 59.864 47.826 3.32 0.00 34.73 3.06
4571 5886 2.073816 CAACCTGGTCGACCATTACAC 58.926 52.381 36.21 8.29 46.46 2.90
4582 5897 4.517075 TCGACCATTACACAATTTGAGCAA 59.483 37.500 2.79 0.00 0.00 3.91
4622 5943 8.404000 ACATAATTTCTCATGTCTTCAAGATGC 58.596 33.333 0.00 0.00 29.34 3.91
4624 5945 9.842775 ATAATTTCTCATGTCTTCAAGATGCTA 57.157 29.630 0.00 0.00 0.00 3.49
4656 5978 2.443255 TCTGGCCCTTTCTTCAAGAAGT 59.557 45.455 0.00 0.00 35.37 3.01
4659 5981 3.244911 TGGCCCTTTCTTCAAGAAGTAGG 60.245 47.826 10.08 10.08 39.13 3.18
4703 6025 2.029020 TGAACAGTCAGAAGGTCCATCG 60.029 50.000 0.00 0.00 0.00 3.84
4752 6075 5.982890 AGTAAATTTGCAGCAGGTTATGT 57.017 34.783 9.04 0.00 0.00 2.29
4774 6097 8.828688 ATGTAAGAACTAAACTGAACTACACC 57.171 34.615 0.00 0.00 0.00 4.16
4775 6098 7.212274 TGTAAGAACTAAACTGAACTACACCC 58.788 38.462 0.00 0.00 0.00 4.61
4776 6099 6.496144 AAGAACTAAACTGAACTACACCCT 57.504 37.500 0.00 0.00 0.00 4.34
4777 6100 6.099159 AGAACTAAACTGAACTACACCCTC 57.901 41.667 0.00 0.00 0.00 4.30
4778 6101 5.839606 AGAACTAAACTGAACTACACCCTCT 59.160 40.000 0.00 0.00 0.00 3.69
4779 6102 5.470047 ACTAAACTGAACTACACCCTCTG 57.530 43.478 0.00 0.00 0.00 3.35
4780 6103 4.900054 ACTAAACTGAACTACACCCTCTGT 59.100 41.667 0.00 0.00 36.82 3.41
4781 6104 6.073314 ACTAAACTGAACTACACCCTCTGTA 58.927 40.000 0.00 0.00 33.91 2.74
4782 6105 5.881923 AAACTGAACTACACCCTCTGTAA 57.118 39.130 0.00 0.00 34.80 2.41
4783 6106 5.881923 AACTGAACTACACCCTCTGTAAA 57.118 39.130 0.00 0.00 34.80 2.01
4784 6107 5.211174 ACTGAACTACACCCTCTGTAAAC 57.789 43.478 0.00 0.00 34.80 2.01
4785 6108 4.900054 ACTGAACTACACCCTCTGTAAACT 59.100 41.667 0.00 0.00 34.80 2.66
4786 6109 6.073314 ACTGAACTACACCCTCTGTAAACTA 58.927 40.000 0.00 0.00 34.80 2.24
4787 6110 6.552350 ACTGAACTACACCCTCTGTAAACTAA 59.448 38.462 0.00 0.00 34.80 2.24
4788 6111 7.234988 ACTGAACTACACCCTCTGTAAACTAAT 59.765 37.037 0.00 0.00 34.80 1.73
4789 6112 8.654485 TGAACTACACCCTCTGTAAACTAATA 57.346 34.615 0.00 0.00 34.80 0.98
4790 6113 9.263446 TGAACTACACCCTCTGTAAACTAATAT 57.737 33.333 0.00 0.00 34.80 1.28
4796 6119 8.422566 ACACCCTCTGTAAACTAATATAAGAGC 58.577 37.037 0.00 0.00 0.00 4.09
4797 6120 8.421784 CACCCTCTGTAAACTAATATAAGAGCA 58.578 37.037 0.00 0.00 0.00 4.26
4798 6121 9.160412 ACCCTCTGTAAACTAATATAAGAGCAT 57.840 33.333 0.00 0.00 0.00 3.79
4848 6171 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
4849 6172 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
4850 6173 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
4851 6174 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
4852 6175 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
4853 6176 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
4854 6177 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
4866 6189 4.881850 CGGAGGGAGTACTAAATTTGCAAT 59.118 41.667 0.00 0.00 0.00 3.56
4905 6228 3.056821 TGGCTGCTATATAGGTTAGTGCG 60.057 47.826 11.72 0.00 0.00 5.34
4982 6305 3.711704 CTGCTAGGAGGAAGGGAACAATA 59.288 47.826 2.75 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.747855 CGCCTTGCAGGAGGGAAC 60.748 66.667 6.57 0.00 37.67 3.62
47 48 3.710722 CCCAACTCAGAGGCGCCT 61.711 66.667 33.48 33.48 0.00 5.52
76 77 2.725312 GGCTCCACTCGCATCTCCA 61.725 63.158 0.00 0.00 0.00 3.86
114 115 2.266055 CCTTGGGTCAGGCTCGTC 59.734 66.667 0.00 0.00 0.00 4.20
117 118 2.671682 GACCCTTGGGTCAGGCTC 59.328 66.667 28.49 5.68 38.62 4.70
118 119 3.322466 CGACCCTTGGGTCAGGCT 61.322 66.667 31.07 1.96 38.68 4.58
119 120 4.410400 CCGACCCTTGGGTCAGGC 62.410 72.222 31.07 11.44 38.68 4.85
120 121 2.465055 GAACCGACCCTTGGGTCAGG 62.465 65.000 31.07 30.48 43.01 3.86
121 122 1.003718 GAACCGACCCTTGGGTCAG 60.004 63.158 31.07 24.77 43.01 3.51
122 123 3.153825 GAACCGACCCTTGGGTCA 58.846 61.111 31.07 0.00 43.01 4.02
133 134 1.006571 GTGAGGCTTCGTGAACCGA 60.007 57.895 0.00 0.00 45.66 4.69
143 144 2.685380 CGGGAGAGGGTGAGGCTT 60.685 66.667 0.00 0.00 0.00 4.35
180 181 1.234615 AAAATGCGTCGGTGGTGGAG 61.235 55.000 0.00 0.00 0.00 3.86
217 223 2.270352 AACCATGCCTCTCGTGAAAA 57.730 45.000 0.00 0.00 33.49 2.29
222 228 2.257353 GCAAAACCATGCCTCTCGT 58.743 52.632 0.00 0.00 40.49 4.18
232 238 1.407258 CCTTTCACGGAAGCAAAACCA 59.593 47.619 0.00 0.00 0.00 3.67
233 239 1.868109 GCCTTTCACGGAAGCAAAACC 60.868 52.381 0.00 0.00 0.00 3.27
234 240 1.487482 GCCTTTCACGGAAGCAAAAC 58.513 50.000 0.00 0.00 0.00 2.43
244 250 1.227999 TTCCAAGAGCGCCTTTCACG 61.228 55.000 2.29 0.00 31.42 4.35
249 255 2.027192 TCTACATTTCCAAGAGCGCCTT 60.027 45.455 2.29 4.27 34.91 4.35
254 260 6.681777 ACACATTTTCTACATTTCCAAGAGC 58.318 36.000 0.00 0.00 0.00 4.09
286 292 1.196354 CTTGCCTCTCGTGAAAGCAAG 59.804 52.381 25.08 25.08 45.09 4.01
332 338 2.549282 CCTTTCGCGGAACACACG 59.451 61.111 6.13 0.00 0.00 4.49
333 339 2.251371 GCCTTTCGCGGAACACAC 59.749 61.111 6.13 0.00 0.00 3.82
335 341 2.251371 GTGCCTTTCGCGGAACAC 59.749 61.111 6.13 5.60 42.08 3.32
336 342 3.342627 CGTGCCTTTCGCGGAACA 61.343 61.111 6.13 0.00 44.36 3.18
346 374 0.240945 CGAAAGCCAAATCGTGCCTT 59.759 50.000 0.00 0.00 34.48 4.35
358 386 3.056328 GTGCCTCCCACGAAAGCC 61.056 66.667 0.00 0.00 34.22 4.35
365 393 1.212751 GCAAAATCGTGCCTCCCAC 59.787 57.895 0.00 0.00 38.66 4.61
366 394 0.539438 AAGCAAAATCGTGCCTCCCA 60.539 50.000 0.00 0.00 46.14 4.37
374 402 2.480419 CCTCTCGTGAAAGCAAAATCGT 59.520 45.455 0.00 0.00 0.00 3.73
377 405 2.030805 GTGCCTCTCGTGAAAGCAAAAT 60.031 45.455 11.96 0.00 34.62 1.82
446 474 0.306533 TTCGTTTTCAAGAGGCACGC 59.693 50.000 0.00 0.00 0.00 5.34
595 627 3.536956 AAATCTCGAGCCGGTTTATCA 57.463 42.857 7.81 0.00 0.00 2.15
599 631 2.734492 CGTCTAAATCTCGAGCCGGTTT 60.734 50.000 7.81 8.57 0.00 3.27
602 634 0.317938 CCGTCTAAATCTCGAGCCGG 60.318 60.000 7.81 0.00 0.00 6.13
603 635 0.661552 TCCGTCTAAATCTCGAGCCG 59.338 55.000 7.81 1.07 0.00 5.52
604 636 2.608261 CCATCCGTCTAAATCTCGAGCC 60.608 54.545 7.81 0.00 0.00 4.70
667 705 3.566523 GTCATTTATCGCGACCTAGGAG 58.433 50.000 17.98 10.26 0.00 3.69
671 709 4.469552 CATACGTCATTTATCGCGACCTA 58.530 43.478 12.93 0.00 0.00 3.08
673 711 2.160013 GCATACGTCATTTATCGCGACC 60.160 50.000 12.93 0.00 0.00 4.79
676 714 1.778568 GCGCATACGTCATTTATCGCG 60.779 52.381 0.30 0.00 43.99 5.87
681 719 0.574922 CGCTGCGCATACGTCATTTA 59.425 50.000 20.96 0.00 42.83 1.40
699 737 3.655810 AAAGAGCCTCTCAGCCGCG 62.656 63.158 0.00 0.00 32.06 6.46
774 821 0.539438 TTTGTTTCCCTGGCTCGCAT 60.539 50.000 0.00 0.00 0.00 4.73
807 855 4.693095 GGTTGTGCACAGGAAAAAGAAAAA 59.307 37.500 20.59 0.00 0.00 1.94
808 856 4.249661 GGTTGTGCACAGGAAAAAGAAAA 58.750 39.130 20.59 0.00 0.00 2.29
809 857 3.259374 TGGTTGTGCACAGGAAAAAGAAA 59.741 39.130 20.59 0.00 0.00 2.52
810 858 2.828520 TGGTTGTGCACAGGAAAAAGAA 59.171 40.909 20.59 0.00 0.00 2.52
811 859 2.451490 TGGTTGTGCACAGGAAAAAGA 58.549 42.857 20.59 0.00 0.00 2.52
812 860 2.957491 TGGTTGTGCACAGGAAAAAG 57.043 45.000 20.59 0.00 0.00 2.27
819 867 1.065600 CGGGTTTGGTTGTGCACAG 59.934 57.895 20.59 0.70 0.00 3.66
857 905 2.204151 AGTGGGGGAAGTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
1300 1409 0.523966 CAAATTCCGGCGGCTAAACA 59.476 50.000 23.83 0.00 0.00 2.83
1381 1550 2.164338 TGTTTGGAAGCGGGATTAACC 58.836 47.619 0.00 0.00 38.08 2.85
1389 1558 0.962356 AGGCTGATGTTTGGAAGCGG 60.962 55.000 0.00 0.00 36.50 5.52
1425 1594 3.431068 GCTCCTTCTTCCTGCCTACTAAC 60.431 52.174 0.00 0.00 0.00 2.34
1493 1662 2.294074 AGTGCCGCAGTTTTGAACTAA 58.706 42.857 0.00 0.00 40.46 2.24
1509 1678 2.618709 CCCTCCGATCCAAAATAAGTGC 59.381 50.000 0.00 0.00 0.00 4.40
1583 1752 1.078214 TGCTTCGGCTTGGAGATGG 60.078 57.895 0.00 0.00 42.37 3.51
1635 1804 3.256383 TGCTTGATTGGAGGTGTTGATTG 59.744 43.478 0.00 0.00 0.00 2.67
1655 1824 1.538047 TCTCAATCAACAGGGCTTGC 58.462 50.000 0.00 0.00 0.00 4.01
1694 1863 4.154918 CCTCTGTTCTGTATTTCTGTTGCC 59.845 45.833 0.00 0.00 0.00 4.52
1881 2371 1.610522 CTTCCTTGCACCTCTGTTTGG 59.389 52.381 0.00 0.00 0.00 3.28
1917 2407 8.589629 CAACAAAATGCTAAATATTGTCTCAGC 58.410 33.333 0.00 0.00 33.39 4.26
1935 2428 0.250424 GCAAGCTGGGGCAACAAAAT 60.250 50.000 0.00 0.00 41.70 1.82
1959 2452 7.541122 AAAGATTAATCACCGCTACTTCTTC 57.459 36.000 17.56 0.00 0.00 2.87
2028 2521 7.238710 ACTTCTAAAAGTGGTTCATGGGTAAT 58.761 34.615 0.00 0.00 44.13 1.89
2039 2532 7.096884 GTTTCCAGAAACTTCTAAAAGTGGT 57.903 36.000 14.55 0.00 45.07 4.16
2143 2639 4.962362 TCAGTGATTATGTGGCTCTAAGGA 59.038 41.667 0.00 0.00 0.00 3.36
2187 2683 5.130292 ACTTGATTGATTTGCTTGTCAGG 57.870 39.130 0.00 0.00 0.00 3.86
2239 2735 3.306019 CCACCCACCAAAAAGCTAACATC 60.306 47.826 0.00 0.00 0.00 3.06
2367 2874 1.261238 GGTCCTGGCAGTAGCTCAGT 61.261 60.000 14.43 0.00 41.70 3.41
2400 2907 2.221299 TCCCTTGGCCTTGCGTAGT 61.221 57.895 3.32 0.00 0.00 2.73
2548 3078 4.400884 AGCACACAGAAAACAAACACCATA 59.599 37.500 0.00 0.00 0.00 2.74
2663 3198 1.271543 CCCTTGACATTGACCTCAGCA 60.272 52.381 0.00 0.00 0.00 4.41
3057 4251 5.284861 TCAGAAGTTGTTAGGTAGCAACA 57.715 39.130 16.17 0.39 45.88 3.33
3086 4281 4.986054 ACCAAGTTACAGTGTAATCCCA 57.014 40.909 18.35 0.00 0.00 4.37
3088 4283 8.234546 CACATAAACCAAGTTACAGTGTAATCC 58.765 37.037 18.35 7.21 0.00 3.01
3169 4367 2.094957 GCAGCATTTAAGCAACGGGTAA 60.095 45.455 0.00 0.00 36.85 2.85
3543 4785 5.703876 CAAGATTGCCCAGAAAACTTAGTC 58.296 41.667 0.00 0.00 0.00 2.59
3730 4972 9.186323 CATAAACTCTGTAGAACGATGGAATAG 57.814 37.037 0.00 0.00 0.00 1.73
3732 4974 6.986817 CCATAAACTCTGTAGAACGATGGAAT 59.013 38.462 0.00 0.00 34.48 3.01
3773 5015 0.553333 ATAAGGGGGAAGAAGCCTGC 59.447 55.000 0.00 0.00 0.00 4.85
3778 5020 5.886474 GGTTCACTTTATAAGGGGGAAGAAG 59.114 44.000 0.00 0.00 31.06 2.85
3779 5021 5.281349 GGGTTCACTTTATAAGGGGGAAGAA 60.281 44.000 0.00 0.00 31.06 2.52
3780 5022 4.228895 GGGTTCACTTTATAAGGGGGAAGA 59.771 45.833 0.00 0.00 31.06 2.87
3838 5094 1.468736 GGCAAGCTCAGCTAAATGTGC 60.469 52.381 11.25 11.25 38.25 4.57
3887 5143 5.182001 ACAGAAACATGCCAGTTCATAAGTC 59.818 40.000 0.00 0.00 0.00 3.01
3999 5258 2.023461 CTCTGTCTACGCGGCTCG 59.977 66.667 12.47 0.00 45.38 5.03
4044 5303 2.490270 AATGCCGCTTCCTCTTGCCT 62.490 55.000 0.00 0.00 0.00 4.75
4083 5342 2.554032 ACGGCAAAATTTCAGAGGACTG 59.446 45.455 0.00 0.00 44.66 3.51
4162 5422 5.649831 AGGCAAAATTCATCTCTGTTCCTAC 59.350 40.000 0.00 0.00 0.00 3.18
4260 5557 8.321353 ACACATATAACAGATTCAAAGGAGTCA 58.679 33.333 0.00 0.00 32.55 3.41
4377 5674 5.684704 TCAGGATTAAGGCCAGACTAATTG 58.315 41.667 5.01 0.00 0.00 2.32
4404 5712 4.403432 ACAGATGGTGGATTTTGGCAATAG 59.597 41.667 0.00 0.00 0.00 1.73
4458 5766 7.118390 ACTGCTATAGAGTGTCAACATGTTTTC 59.882 37.037 8.77 5.62 0.00 2.29
4622 5943 3.624777 AGGGCCAGATTGATGTTTGTAG 58.375 45.455 6.18 0.00 0.00 2.74
4624 5945 2.610438 AGGGCCAGATTGATGTTTGT 57.390 45.000 6.18 0.00 0.00 2.83
4703 6025 0.034670 AGGGAGCTTCAACATCAGCC 60.035 55.000 0.00 0.00 36.62 4.85
4752 6075 7.508296 AGAGGGTGTAGTTCAGTTTAGTTCTTA 59.492 37.037 0.00 0.00 0.00 2.10
4772 6095 8.548880 TGCTCTTATATTAGTTTACAGAGGGT 57.451 34.615 0.00 0.00 0.00 4.34
4822 6145 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
4823 6146 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
4824 6147 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
4825 6148 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
4826 6149 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4827 6150 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4828 6151 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
4829 6152 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
4832 6155 9.646522 TTTAGTACTCCCTCCGTAAACTAATAT 57.353 33.333 0.00 0.00 0.00 1.28
4833 6156 9.646522 ATTTAGTACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 0.00 0.98
4834 6157 7.961326 TTTAGTACTCCCTCCGTAAACTAAT 57.039 36.000 0.00 0.00 0.00 1.73
4835 6158 7.961326 ATTTAGTACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
4836 6159 7.961326 AATTTAGTACTCCCTCCGTAAACTA 57.039 36.000 0.00 0.00 0.00 2.24
4837 6160 6.864151 AATTTAGTACTCCCTCCGTAAACT 57.136 37.500 0.00 0.00 0.00 2.66
4838 6161 6.183360 GCAAATTTAGTACTCCCTCCGTAAAC 60.183 42.308 0.00 0.00 0.00 2.01
4839 6162 5.876460 GCAAATTTAGTACTCCCTCCGTAAA 59.124 40.000 0.00 0.00 0.00 2.01
4840 6163 5.046448 TGCAAATTTAGTACTCCCTCCGTAA 60.046 40.000 0.00 0.00 0.00 3.18
4841 6164 4.467082 TGCAAATTTAGTACTCCCTCCGTA 59.533 41.667 0.00 0.00 0.00 4.02
4842 6165 3.262405 TGCAAATTTAGTACTCCCTCCGT 59.738 43.478 0.00 0.00 0.00 4.69
4843 6166 3.869065 TGCAAATTTAGTACTCCCTCCG 58.131 45.455 0.00 0.00 0.00 4.63
4844 6167 6.564328 CAATTGCAAATTTAGTACTCCCTCC 58.436 40.000 1.71 0.00 0.00 4.30
4845 6168 6.036470 GCAATTGCAAATTTAGTACTCCCTC 58.964 40.000 25.36 0.00 41.59 4.30
4846 6169 5.965922 GCAATTGCAAATTTAGTACTCCCT 58.034 37.500 25.36 0.00 41.59 4.20
4866 6189 1.881973 GCCATCTTCAGTTCTGTGCAA 59.118 47.619 0.00 0.00 0.00 4.08
4870 6193 1.350351 AGCAGCCATCTTCAGTTCTGT 59.650 47.619 0.00 0.00 0.00 3.41
4871 6194 2.110901 AGCAGCCATCTTCAGTTCTG 57.889 50.000 0.00 0.00 0.00 3.02
4905 6228 2.568696 TGTCGCTCTGCTGTTATCTC 57.431 50.000 0.00 0.00 0.00 2.75
4982 6305 7.010160 TCCAGGTTTCAATCTATCCAACTTTT 58.990 34.615 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.