Multiple sequence alignment - TraesCS5D01G303300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G303300 chr5D 100.000 3876 0 0 1 3876 398911108 398907233 0.000000e+00 7158
1 TraesCS5D01G303300 chr5D 93.085 188 11 2 3689 3876 398424256 398424441 1.370000e-69 274
2 TraesCS5D01G303300 chr5D 76.147 436 77 7 207 616 333348630 333348196 1.830000e-48 204
3 TraesCS5D01G303300 chr5B 89.107 3727 273 60 1 3626 479205995 479202301 0.000000e+00 4510
4 TraesCS5D01G303300 chr5B 80.089 447 60 13 195 614 36459096 36459540 4.870000e-79 305
5 TraesCS5D01G303300 chr5A 85.758 1299 117 24 1944 3211 503952003 503953264 0.000000e+00 1312
6 TraesCS5D01G303300 chr5A 87.291 598 69 5 935 1530 503950662 503951254 0.000000e+00 676
7 TraesCS5D01G303300 chr5A 85.472 413 57 3 290 700 618663403 618663814 9.950000e-116 427
8 TraesCS5D01G303300 chr5A 78.360 439 55 15 201 613 379351188 379350764 8.320000e-62 248
9 TraesCS5D01G303300 chr7A 80.139 1868 254 67 937 2757 12117364 12115567 0.000000e+00 1286
10 TraesCS5D01G303300 chr7A 82.821 1042 99 40 2266 3276 612992230 612991238 0.000000e+00 859
11 TraesCS5D01G303300 chr7A 85.780 436 59 2 998 1433 612993171 612992739 3.530000e-125 459
12 TraesCS5D01G303300 chr7A 91.322 242 20 1 2746 2986 12101501 12101260 2.890000e-86 329
13 TraesCS5D01G303300 chr7A 95.676 185 8 0 3692 3876 468939462 468939278 8.140000e-77 298
14 TraesCS5D01G303300 chr7A 94.595 185 9 1 3693 3876 159552169 159552353 6.340000e-73 285
15 TraesCS5D01G303300 chr7D 82.752 1090 119 36 2223 3276 532900558 532899502 0.000000e+00 907
16 TraesCS5D01G303300 chr7D 82.932 996 106 37 2221 3183 533433579 533432615 0.000000e+00 839
17 TraesCS5D01G303300 chr7D 82.019 723 90 20 195 881 253157659 253158377 2.600000e-161 579
18 TraesCS5D01G303300 chr7D 79.520 708 96 29 195 867 299151566 299152259 3.530000e-125 459
19 TraesCS5D01G303300 chr7D 82.331 532 84 7 998 1528 533434518 533433996 1.640000e-123 453
20 TraesCS5D01G303300 chr7D 85.450 433 60 2 1001 1433 532901470 532901041 7.640000e-122 448
21 TraesCS5D01G303300 chr7D 86.224 196 26 1 1 195 3086686 3086491 1.090000e-50 211
22 TraesCS5D01G303300 chr7D 77.966 354 51 13 201 529 207196269 207196620 3.060000e-46 196
23 TraesCS5D01G303300 chr7B 82.358 1094 121 39 2221 3276 573262446 573261387 0.000000e+00 885
24 TraesCS5D01G303300 chr7B 82.707 532 82 7 998 1528 573263385 573262863 7.590000e-127 464
25 TraesCS5D01G303300 chr7B 80.976 410 50 15 195 576 230215511 230215920 2.260000e-77 300
26 TraesCS5D01G303300 chr7B 81.424 323 44 8 569 881 230216808 230217124 2.310000e-62 250
27 TraesCS5D01G303300 chr1D 82.723 683 78 20 201 847 375982698 375983376 4.340000e-159 571
28 TraesCS5D01G303300 chr1B 82.459 553 82 12 302 846 600607208 600606663 1.630000e-128 470
29 TraesCS5D01G303300 chr6D 82.000 550 96 3 2365 2912 72229795 72229247 7.590000e-127 464
30 TraesCS5D01G303300 chr6D 93.548 186 11 1 3692 3876 371534940 371535125 3.810000e-70 276
31 TraesCS5D01G303300 chr6D 82.812 192 29 3 1 191 10745468 10745656 6.660000e-38 169
32 TraesCS5D01G303300 chr6D 81.407 199 30 6 1 194 373337786 373337590 5.190000e-34 156
33 TraesCS5D01G303300 chr6B 81.307 551 98 5 2365 2912 146838397 146837849 3.550000e-120 442
34 TraesCS5D01G303300 chr6B 79.730 444 61 10 195 614 280363754 280364192 1.050000e-75 294
35 TraesCS5D01G303300 chr6B 93.122 189 12 1 3688 3876 694442572 694442385 3.810000e-70 276
36 TraesCS5D01G303300 chr6B 88.202 178 20 1 20 196 290588343 290588520 1.090000e-50 211
37 TraesCS5D01G303300 chr6B 87.640 178 21 1 20 196 290620153 290620330 5.080000e-49 206
38 TraesCS5D01G303300 chr2D 79.396 563 88 13 201 736 555311455 555310894 4.730000e-99 372
39 TraesCS5D01G303300 chr2D 93.617 188 10 2 3689 3876 413780126 413780311 2.950000e-71 279
40 TraesCS5D01G303300 chr2D 80.488 328 62 2 290 615 61325086 61324759 2.310000e-62 250
41 TraesCS5D01G303300 chr2D 82.990 194 32 1 1 194 601015484 601015292 1.430000e-39 174
42 TraesCS5D01G303300 chr2D 90.123 81 7 1 195 274 128444672 128444752 1.900000e-18 104
43 TraesCS5D01G303300 chr2B 82.927 328 54 2 290 615 719515776 719516103 1.050000e-75 294
44 TraesCS5D01G303300 chr4A 95.109 184 9 0 3693 3876 580533487 580533304 1.360000e-74 291
45 TraesCS5D01G303300 chr1A 92.670 191 12 2 3687 3876 576232416 576232227 1.370000e-69 274
46 TraesCS5D01G303300 chr6A 92.632 190 12 2 3687 3875 176986814 176987002 4.930000e-69 272
47 TraesCS5D01G303300 chr6A 80.501 359 45 7 195 529 567346774 567347131 6.430000e-63 252
48 TraesCS5D01G303300 chr4D 87.958 191 19 4 2 189 409079079 409079268 5.040000e-54 222
49 TraesCS5D01G303300 chr2A 86.387 191 18 5 2 191 564979195 564979012 6.570000e-48 202
50 TraesCS5D01G303300 chr3D 81.726 197 27 6 1 195 374038972 374039161 5.190000e-34 156
51 TraesCS5D01G303300 chrUn 87.778 90 10 1 201 289 89048195 89048106 1.900000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G303300 chr5D 398907233 398911108 3875 True 7158.0 7158 100.0000 1 3876 1 chr5D.!!$R2 3875
1 TraesCS5D01G303300 chr5B 479202301 479205995 3694 True 4510.0 4510 89.1070 1 3626 1 chr5B.!!$R1 3625
2 TraesCS5D01G303300 chr5A 503950662 503953264 2602 False 994.0 1312 86.5245 935 3211 2 chr5A.!!$F2 2276
3 TraesCS5D01G303300 chr7A 12115567 12117364 1797 True 1286.0 1286 80.1390 937 2757 1 chr7A.!!$R2 1820
4 TraesCS5D01G303300 chr7A 612991238 612993171 1933 True 659.0 859 84.3005 998 3276 2 chr7A.!!$R4 2278
5 TraesCS5D01G303300 chr7D 532899502 532901470 1968 True 677.5 907 84.1010 1001 3276 2 chr7D.!!$R2 2275
6 TraesCS5D01G303300 chr7D 533432615 533434518 1903 True 646.0 839 82.6315 998 3183 2 chr7D.!!$R3 2185
7 TraesCS5D01G303300 chr7D 253157659 253158377 718 False 579.0 579 82.0190 195 881 1 chr7D.!!$F2 686
8 TraesCS5D01G303300 chr7D 299151566 299152259 693 False 459.0 459 79.5200 195 867 1 chr7D.!!$F3 672
9 TraesCS5D01G303300 chr7B 573261387 573263385 1998 True 674.5 885 82.5325 998 3276 2 chr7B.!!$R1 2278
10 TraesCS5D01G303300 chr7B 230215511 230217124 1613 False 275.0 300 81.2000 195 881 2 chr7B.!!$F1 686
11 TraesCS5D01G303300 chr1D 375982698 375983376 678 False 571.0 571 82.7230 201 847 1 chr1D.!!$F1 646
12 TraesCS5D01G303300 chr1B 600606663 600607208 545 True 470.0 470 82.4590 302 846 1 chr1B.!!$R1 544
13 TraesCS5D01G303300 chr6D 72229247 72229795 548 True 464.0 464 82.0000 2365 2912 1 chr6D.!!$R1 547
14 TraesCS5D01G303300 chr6B 146837849 146838397 548 True 442.0 442 81.3070 2365 2912 1 chr6B.!!$R1 547
15 TraesCS5D01G303300 chr2D 555310894 555311455 561 True 372.0 372 79.3960 201 736 1 chr2D.!!$R2 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 483 0.175302 ATCTCGCAGCTGTCTGGAAG 59.825 55.0 16.64 4.41 40.65 3.46 F
1132 2100 0.531200 CGGAAAGAGGAGCTTACGGT 59.469 55.0 0.00 0.00 35.24 4.83 F
2389 3828 0.109964 TTGCTCGCACAAATAACGCC 60.110 50.0 0.00 0.00 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 2701 0.253044 TGGCAACACCTAGGCATCTC 59.747 55.0 9.30 0.0 46.17 2.75 R
2796 4235 0.251634 TGCGCTGGGATCATACAACA 59.748 50.0 9.73 0.0 0.00 3.33 R
3819 5279 0.180878 CGGCCCGGTTTCCCTTATAA 59.819 55.0 0.00 0.0 0.00 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.757682 TTTAAAGCCGTATGCCCCAG 58.242 50.000 0.00 0.00 42.71 4.45
45 46 1.474332 CCCAGCCAAGCCACAATGTT 61.474 55.000 0.00 0.00 0.00 2.71
85 88 4.127040 CGCGCACTCTCAGAGGCT 62.127 66.667 8.75 0.00 33.35 4.58
87 90 2.508887 CGCACTCTCAGAGGCTGC 60.509 66.667 6.64 6.92 33.35 5.25
119 122 1.123077 CCACCGATCCATCTCCAGAA 58.877 55.000 0.00 0.00 0.00 3.02
120 123 1.069823 CCACCGATCCATCTCCAGAAG 59.930 57.143 0.00 0.00 0.00 2.85
129 132 3.269643 TCCATCTCCAGAAGAGGTACTGA 59.730 47.826 0.00 0.00 41.55 3.41
148 151 4.329545 GCACCGACCTTGCCTGGA 62.330 66.667 0.00 0.00 33.58 3.86
152 155 2.743928 CGACCTTGCCTGGACTGC 60.744 66.667 0.00 0.00 0.00 4.40
177 180 2.733593 GCCACCACGACGTCAGAC 60.734 66.667 17.16 0.00 0.00 3.51
237 244 2.433446 CCTCCAGCCAGCACTTGT 59.567 61.111 0.00 0.00 0.00 3.16
254 264 2.270352 TGTTCCAAAACGATGCTCCT 57.730 45.000 0.00 0.00 38.28 3.69
256 266 2.151202 GTTCCAAAACGATGCTCCTGA 58.849 47.619 0.00 0.00 0.00 3.86
272 282 0.679505 CTGAAGGGAGAACGACACCA 59.320 55.000 0.00 0.00 0.00 4.17
312 345 1.559065 TTCCCCCGGAACATCCTGAC 61.559 60.000 0.73 0.00 36.71 3.51
313 346 1.995626 CCCCCGGAACATCCTGACT 60.996 63.158 0.73 0.00 33.30 3.41
378 412 1.677633 TCAGAGACGCCACCATCGA 60.678 57.895 0.00 0.00 0.00 3.59
417 451 1.021968 GCACGGTTTTCACCAGAAGT 58.978 50.000 0.00 0.00 44.53 3.01
428 462 2.344203 CCAGAAGTCGCCTCGTCCT 61.344 63.158 0.00 0.00 0.00 3.85
437 471 2.775856 GCCTCGTCCTGATCTCGCA 61.776 63.158 0.00 0.00 0.00 5.10
442 476 1.515020 GTCCTGATCTCGCAGCTGT 59.485 57.895 16.64 0.00 34.56 4.40
449 483 0.175302 ATCTCGCAGCTGTCTGGAAG 59.825 55.000 16.64 4.41 40.65 3.46
531 565 1.604378 CTTCACCGGAGCCCTCATT 59.396 57.895 9.46 0.00 0.00 2.57
539 573 4.349503 AGCCCTCATTGTGCCGCA 62.350 61.111 0.00 0.00 0.00 5.69
743 1678 2.359169 CCGCCTACTCCTGCCTCAA 61.359 63.158 0.00 0.00 0.00 3.02
750 1688 1.192146 ACTCCTGCCTCAACGCCTTA 61.192 55.000 0.00 0.00 0.00 2.69
800 1747 2.664851 CGGCGGCAGTGTCTTTCA 60.665 61.111 10.53 0.00 0.00 2.69
814 1761 2.955660 GTCTTTCATTGTGGGTTGTGGA 59.044 45.455 0.00 0.00 0.00 4.02
905 1852 2.193248 GGGAGGGGGCGATTCAAG 59.807 66.667 0.00 0.00 0.00 3.02
915 1862 3.315470 GGGGCGATTCAAGAATTTCCTAC 59.685 47.826 11.43 5.02 0.00 3.18
927 1890 6.600882 AGAATTTCCTACCACGAAAGACTA 57.399 37.500 0.00 0.00 32.98 2.59
933 1896 6.630444 TCCTACCACGAAAGACTATACATC 57.370 41.667 0.00 0.00 0.00 3.06
1118 2086 3.079131 CGATCAAGCCCATCGGAAA 57.921 52.632 0.00 0.00 39.62 3.13
1132 2100 0.531200 CGGAAAGAGGAGCTTACGGT 59.469 55.000 0.00 0.00 35.24 4.83
1308 2276 6.832900 TGAAGGATGTAATGATGCCAATACAA 59.167 34.615 0.00 0.00 40.74 2.41
1333 2301 4.383226 GGAGGAACTTCAAGGATGTCTACC 60.383 50.000 0.00 0.00 41.55 3.18
1339 2307 2.187958 TCAAGGATGTCTACCTGGTGG 58.812 52.381 10.23 6.75 37.85 4.61
1343 2311 2.311688 GATGTCTACCTGGTGGCCGG 62.312 65.000 10.23 0.00 36.63 6.13
1416 2384 4.160065 TCCAATGACCACTGCCAATATTTG 59.840 41.667 0.00 0.00 0.00 2.32
1454 2422 4.025647 CGACAGTCACCTCTTCTTTTTCAC 60.026 45.833 0.41 0.00 0.00 3.18
1478 2448 4.864247 TCTTTCTTTTTGCTTGACACTTGC 59.136 37.500 0.00 0.00 0.00 4.01
1501 2472 8.995027 TGCCCAGTAATATTTCATATGTTCTT 57.005 30.769 1.90 0.00 0.00 2.52
1544 2521 8.489489 AGTTCATTCACACCTCATGTTATATCT 58.511 33.333 0.00 0.00 40.64 1.98
1546 2523 7.795047 TCATTCACACCTCATGTTATATCTGT 58.205 34.615 0.00 0.00 40.64 3.41
1570 2547 3.507622 AGTAATGTCTTTGGGCTTGCTTC 59.492 43.478 0.00 0.00 0.00 3.86
1588 2565 4.097892 TGCTTCGCTAGACATAGTCAATCA 59.902 41.667 0.00 0.00 34.60 2.57
1592 2569 6.149129 TCGCTAGACATAGTCAATCACATT 57.851 37.500 0.00 0.00 34.60 2.71
1647 2624 1.732259 CTCCCGACACGAATCAAAAGG 59.268 52.381 0.00 0.00 0.00 3.11
1727 2715 3.833732 TCTATTCGAGATGCCTAGGTGT 58.166 45.455 11.31 0.00 0.00 4.16
1731 2719 0.811616 CGAGATGCCTAGGTGTTGCC 60.812 60.000 11.31 0.00 37.58 4.52
1787 2781 3.108847 TGGTTGTTCCAGGAAAGGTTT 57.891 42.857 2.45 0.00 41.93 3.27
1792 2786 4.464069 TGTTCCAGGAAAGGTTTTTGTG 57.536 40.909 2.45 0.00 0.00 3.33
1799 2793 6.381420 TCCAGGAAAGGTTTTTGTGTGATAAA 59.619 34.615 0.00 0.00 0.00 1.40
1869 2869 6.795399 ACATGTTAAGTTGTCAAGTTCCAAG 58.205 36.000 8.95 7.43 0.00 3.61
1930 2935 6.183360 GGAAGAAGGACTGTTTCAATATCTGC 60.183 42.308 0.00 0.00 0.00 4.26
1954 3363 9.569122 TGCGATGGCACTATATATAGTAGATTA 57.431 33.333 22.16 9.90 46.21 1.75
2007 3417 8.613482 GTGCTTAGGAATGATAGGTCTTAAAAC 58.387 37.037 0.00 0.00 0.00 2.43
2162 3576 1.068472 CCTGCTCGACTTGTCTTACGT 60.068 52.381 0.00 0.00 0.00 3.57
2389 3828 0.109964 TTGCTCGCACAAATAACGCC 60.110 50.000 0.00 0.00 0.00 5.68
2440 3879 1.581954 CCGCTGGTATAGAGCTCCG 59.418 63.158 10.93 3.83 34.03 4.63
2504 3943 1.303561 TGGTCTGTTGGCTGCATCC 60.304 57.895 0.00 0.00 0.00 3.51
2619 4058 3.354948 TGATGACCTGGAGTTCATTGG 57.645 47.619 0.00 0.00 0.00 3.16
2795 4234 2.301296 CTGGAGCACCCCTATATGTCTG 59.699 54.545 0.00 0.00 34.81 3.51
2796 4235 2.330216 GGAGCACCCCTATATGTCTGT 58.670 52.381 0.00 0.00 0.00 3.41
2798 4237 2.700897 GAGCACCCCTATATGTCTGTGT 59.299 50.000 0.00 0.00 0.00 3.72
2980 4423 2.076100 TGAAGAGCTATTTGCCACACG 58.924 47.619 0.00 0.00 44.23 4.49
2981 4424 0.804989 AAGAGCTATTTGCCACACGC 59.195 50.000 0.00 0.00 44.23 5.34
2982 4425 1.026718 AGAGCTATTTGCCACACGCC 61.027 55.000 0.00 0.00 44.23 5.68
2983 4426 1.993369 GAGCTATTTGCCACACGCCC 61.993 60.000 0.00 0.00 44.23 6.13
2984 4427 2.339556 GCTATTTGCCACACGCCCA 61.340 57.895 0.00 0.00 36.24 5.36
2985 4428 1.506262 CTATTTGCCACACGCCCAC 59.494 57.895 0.00 0.00 36.24 4.61
3011 4454 4.067192 CACAACAGGATCTTCACATGTCA 58.933 43.478 0.00 0.00 31.17 3.58
3087 4535 4.174009 CGTCTGGTGACCTGTTATGTAAG 58.826 47.826 2.11 0.00 39.94 2.34
3110 4559 2.238898 AGGTGCACAATAAGACCCCTAC 59.761 50.000 20.43 0.00 0.00 3.18
3122 4573 2.910977 AGACCCCTACGGATTTTTCTGT 59.089 45.455 0.00 0.00 34.64 3.41
3151 4605 8.027771 GTGGGTCACTACTTGTAGTATATATGC 58.972 40.741 12.40 0.00 29.08 3.14
3178 4632 6.919775 ACTATGTTGTGGAAGTAGAGTTCT 57.080 37.500 0.00 0.00 0.00 3.01
3183 4637 6.278363 TGTTGTGGAAGTAGAGTTCTGTTAC 58.722 40.000 0.00 0.00 0.00 2.50
3221 4675 6.223138 TGAAGACGCTTGTGTAAATTGTAG 57.777 37.500 0.00 0.00 0.00 2.74
3229 4683 6.359617 CGCTTGTGTAAATTGTAGTCCTTTTG 59.640 38.462 0.00 0.00 0.00 2.44
3278 4737 5.975693 AAGAGGCTGCTCTATGTATAGAC 57.024 43.478 0.00 0.00 35.64 2.59
3284 4743 5.417266 GGCTGCTCTATGTATAGACATCTCA 59.583 44.000 6.19 0.77 43.01 3.27
3317 4777 1.596954 CCTTGGTTTCGTCTGTTTGCG 60.597 52.381 0.00 0.00 0.00 4.85
3326 4786 1.852942 GTCTGTTTGCGTCAGAGTGA 58.147 50.000 5.72 0.00 41.66 3.41
3334 4794 3.232213 TGCGTCAGAGTGATTACCTTC 57.768 47.619 0.00 0.00 0.00 3.46
3342 4802 5.877012 TCAGAGTGATTACCTTCAAATCTGC 59.123 40.000 10.70 0.00 39.38 4.26
3370 4830 3.931578 TCTTCAAGAGCTAGAAACTGCC 58.068 45.455 0.00 0.00 0.00 4.85
3383 4843 1.234615 AACTGCCGTGTGTATGGTGC 61.235 55.000 0.00 0.00 35.28 5.01
3389 4849 1.464608 CCGTGTGTATGGTGCTTTCTG 59.535 52.381 0.00 0.00 0.00 3.02
3397 4857 2.356665 TGGTGCTTTCTGTTTGGCTA 57.643 45.000 0.00 0.00 0.00 3.93
3421 4881 6.952935 AAAGTGTATAAACTCTGAAGCTCG 57.047 37.500 0.00 0.00 30.07 5.03
3441 4901 5.369685 TCGCTGTAATTTGCAAATTCAGA 57.630 34.783 36.42 27.41 39.24 3.27
3475 4935 4.992319 TGATGTAACGGTGGTCAAAGTTAG 59.008 41.667 0.00 0.00 30.83 2.34
3493 4953 2.797285 AGTAGTCCTATTCCCTGGGG 57.203 55.000 14.00 2.42 0.00 4.96
3504 4964 2.735259 TCCCTGGGGAAACTACTTCT 57.265 50.000 14.00 0.00 42.05 2.85
3505 4965 2.999928 TCCCTGGGGAAACTACTTCTT 58.000 47.619 14.00 0.00 42.05 2.52
3508 4968 2.290960 CCTGGGGAAACTACTTCTTGGG 60.291 54.545 0.00 0.00 34.17 4.12
3547 5007 3.815401 GCTGGAGTAATCAATATGCGGTT 59.185 43.478 0.00 0.00 0.00 4.44
3551 5011 5.989168 TGGAGTAATCAATATGCGGTTACAG 59.011 40.000 9.89 0.00 0.00 2.74
3558 5018 2.753055 TATGCGGTTACAGCTTGTCA 57.247 45.000 9.09 0.00 35.28 3.58
3626 5086 7.844493 ATTACCGACACTACTATCCCATAAA 57.156 36.000 0.00 0.00 0.00 1.40
3627 5087 5.526506 ACCGACACTACTATCCCATAAAC 57.473 43.478 0.00 0.00 0.00 2.01
3628 5088 4.957954 ACCGACACTACTATCCCATAAACA 59.042 41.667 0.00 0.00 0.00 2.83
3629 5089 5.601313 ACCGACACTACTATCCCATAAACAT 59.399 40.000 0.00 0.00 0.00 2.71
3630 5090 6.157211 CCGACACTACTATCCCATAAACATC 58.843 44.000 0.00 0.00 0.00 3.06
3631 5091 6.015350 CCGACACTACTATCCCATAAACATCT 60.015 42.308 0.00 0.00 0.00 2.90
3632 5092 7.176165 CCGACACTACTATCCCATAAACATCTA 59.824 40.741 0.00 0.00 0.00 1.98
3633 5093 8.021973 CGACACTACTATCCCATAAACATCTAC 58.978 40.741 0.00 0.00 0.00 2.59
3634 5094 8.191534 ACACTACTATCCCATAAACATCTACC 57.808 38.462 0.00 0.00 0.00 3.18
3635 5095 8.011290 ACACTACTATCCCATAAACATCTACCT 58.989 37.037 0.00 0.00 0.00 3.08
3636 5096 8.871125 CACTACTATCCCATAAACATCTACCTT 58.129 37.037 0.00 0.00 0.00 3.50
3637 5097 9.091220 ACTACTATCCCATAAACATCTACCTTC 57.909 37.037 0.00 0.00 0.00 3.46
3638 5098 7.317722 ACTATCCCATAAACATCTACCTTCC 57.682 40.000 0.00 0.00 0.00 3.46
3639 5099 4.682778 TCCCATAAACATCTACCTTCCG 57.317 45.455 0.00 0.00 0.00 4.30
3640 5100 4.291792 TCCCATAAACATCTACCTTCCGA 58.708 43.478 0.00 0.00 0.00 4.55
3641 5101 4.100498 TCCCATAAACATCTACCTTCCGAC 59.900 45.833 0.00 0.00 0.00 4.79
3642 5102 4.141801 CCCATAAACATCTACCTTCCGACA 60.142 45.833 0.00 0.00 0.00 4.35
3643 5103 5.424757 CCATAAACATCTACCTTCCGACAA 58.575 41.667 0.00 0.00 0.00 3.18
3644 5104 5.878116 CCATAAACATCTACCTTCCGACAAA 59.122 40.000 0.00 0.00 0.00 2.83
3645 5105 6.183360 CCATAAACATCTACCTTCCGACAAAC 60.183 42.308 0.00 0.00 0.00 2.93
3646 5106 4.618920 AACATCTACCTTCCGACAAACT 57.381 40.909 0.00 0.00 0.00 2.66
3647 5107 4.189639 ACATCTACCTTCCGACAAACTC 57.810 45.455 0.00 0.00 0.00 3.01
3648 5108 3.179830 CATCTACCTTCCGACAAACTCG 58.820 50.000 0.00 0.00 42.54 4.18
3649 5109 2.233271 TCTACCTTCCGACAAACTCGT 58.767 47.619 0.00 0.00 41.18 4.18
3650 5110 2.030540 TCTACCTTCCGACAAACTCGTG 60.031 50.000 0.00 0.00 41.18 4.35
3651 5111 0.462789 ACCTTCCGACAAACTCGTGT 59.537 50.000 0.00 0.00 41.18 4.49
3652 5112 1.134610 ACCTTCCGACAAACTCGTGTT 60.135 47.619 0.00 0.00 41.18 3.32
3653 5113 2.101249 ACCTTCCGACAAACTCGTGTTA 59.899 45.455 2.88 0.00 41.18 2.41
3654 5114 2.729882 CCTTCCGACAAACTCGTGTTAG 59.270 50.000 2.88 0.00 41.18 2.34
3655 5115 3.551454 CCTTCCGACAAACTCGTGTTAGA 60.551 47.826 2.88 0.00 41.18 2.10
3656 5116 3.278367 TCCGACAAACTCGTGTTAGAG 57.722 47.619 2.88 0.19 41.18 2.43
3657 5117 1.719780 CCGACAAACTCGTGTTAGAGC 59.280 52.381 2.88 0.00 41.18 4.09
3658 5118 2.390938 CGACAAACTCGTGTTAGAGCA 58.609 47.619 2.88 0.00 41.77 4.26
3659 5119 2.792674 CGACAAACTCGTGTTAGAGCAA 59.207 45.455 2.88 0.00 41.77 3.91
3660 5120 3.361724 CGACAAACTCGTGTTAGAGCAAC 60.362 47.826 2.88 0.00 41.77 4.17
3661 5121 3.793559 ACAAACTCGTGTTAGAGCAACT 58.206 40.909 2.88 0.00 41.77 3.16
3662 5122 3.802685 ACAAACTCGTGTTAGAGCAACTC 59.197 43.478 2.88 0.00 41.77 3.01
3663 5123 4.051922 CAAACTCGTGTTAGAGCAACTCT 58.948 43.478 2.88 2.23 43.83 3.24
3664 5124 5.220381 CAAACTCGTGTTAGAGCAACTCTA 58.780 41.667 2.88 0.16 41.50 2.43
3665 5125 4.688511 ACTCGTGTTAGAGCAACTCTAG 57.311 45.455 4.64 0.00 42.92 2.43
3666 5126 3.119779 ACTCGTGTTAGAGCAACTCTAGC 60.120 47.826 10.50 10.50 42.92 3.42
3667 5127 2.817844 TCGTGTTAGAGCAACTCTAGCA 59.182 45.455 14.73 14.73 46.55 3.49
3671 5131 5.003692 TGTTAGAGCAACTCTAGCAGATG 57.996 43.478 14.73 0.00 44.88 2.90
3672 5132 4.679106 TGTTAGAGCAACTCTAGCAGATGC 60.679 45.833 14.73 13.05 44.88 3.91
3689 5149 7.684062 GCAGATGCGTCATTTATGTATTTTT 57.316 32.000 8.99 0.00 0.00 1.94
3717 5177 2.174685 TGAGAATCATCGGGGAAGGA 57.825 50.000 0.00 0.00 42.56 3.36
3718 5178 2.042464 TGAGAATCATCGGGGAAGGAG 58.958 52.381 0.00 0.00 42.56 3.69
3719 5179 2.043227 GAGAATCATCGGGGAAGGAGT 58.957 52.381 0.00 0.00 33.17 3.85
3720 5180 2.036604 GAGAATCATCGGGGAAGGAGTC 59.963 54.545 0.00 0.00 33.17 3.36
3721 5181 5.124542 GAGAATCATCGGGGAAGGAGTCC 62.125 56.522 0.00 0.00 39.80 3.85
3722 5182 0.266152 ATCATCGGGGAAGGAGTCCT 59.734 55.000 5.62 5.62 46.92 3.85
3738 5198 6.441088 GGAGTCCTTCCACCTGAATATATT 57.559 41.667 0.41 0.00 46.01 1.28
3739 5199 7.554959 GGAGTCCTTCCACCTGAATATATTA 57.445 40.000 0.41 0.00 46.01 0.98
3740 5200 8.152023 GGAGTCCTTCCACCTGAATATATTAT 57.848 38.462 0.41 0.00 46.01 1.28
3741 5201 8.606830 GGAGTCCTTCCACCTGAATATATTATT 58.393 37.037 0.41 0.00 46.01 1.40
3742 5202 9.660180 GAGTCCTTCCACCTGAATATATTATTC 57.340 37.037 0.00 1.20 31.06 1.75
3743 5203 9.170890 AGTCCTTCCACCTGAATATATTATTCA 57.829 33.333 9.05 9.05 36.67 2.57
3744 5204 9.793259 GTCCTTCCACCTGAATATATTATTCAA 57.207 33.333 10.28 0.00 37.55 2.69
3750 5210 9.643693 CCACCTGAATATATTATTCAAAATGGC 57.356 33.333 10.28 0.00 37.55 4.40
3751 5211 9.643693 CACCTGAATATATTATTCAAAATGGCC 57.356 33.333 10.28 0.00 37.55 5.36
3752 5212 9.378504 ACCTGAATATATTATTCAAAATGGCCA 57.621 29.630 8.56 8.56 37.55 5.36
3769 5229 2.923121 GCCATTATGCCAGAAGAGTGA 58.077 47.619 0.00 0.00 0.00 3.41
3770 5230 3.484407 GCCATTATGCCAGAAGAGTGAT 58.516 45.455 0.00 0.00 0.00 3.06
3771 5231 3.501445 GCCATTATGCCAGAAGAGTGATC 59.499 47.826 0.00 0.00 0.00 2.92
3772 5232 4.070716 CCATTATGCCAGAAGAGTGATCC 58.929 47.826 0.00 0.00 0.00 3.36
3773 5233 4.445305 CCATTATGCCAGAAGAGTGATCCA 60.445 45.833 0.00 0.00 0.00 3.41
3774 5234 4.412796 TTATGCCAGAAGAGTGATCCAG 57.587 45.455 0.00 0.00 0.00 3.86
3775 5235 1.649321 TGCCAGAAGAGTGATCCAGT 58.351 50.000 0.00 0.00 0.00 4.00
3776 5236 1.980765 TGCCAGAAGAGTGATCCAGTT 59.019 47.619 0.00 0.00 0.00 3.16
3777 5237 2.373169 TGCCAGAAGAGTGATCCAGTTT 59.627 45.455 0.00 0.00 0.00 2.66
3778 5238 3.582647 TGCCAGAAGAGTGATCCAGTTTA 59.417 43.478 0.00 0.00 0.00 2.01
3779 5239 4.225942 TGCCAGAAGAGTGATCCAGTTTAT 59.774 41.667 0.00 0.00 0.00 1.40
3780 5240 5.425217 TGCCAGAAGAGTGATCCAGTTTATA 59.575 40.000 0.00 0.00 0.00 0.98
3781 5241 6.070251 TGCCAGAAGAGTGATCCAGTTTATAA 60.070 38.462 0.00 0.00 0.00 0.98
3782 5242 6.481644 GCCAGAAGAGTGATCCAGTTTATAAG 59.518 42.308 0.00 0.00 0.00 1.73
3783 5243 6.989169 CCAGAAGAGTGATCCAGTTTATAAGG 59.011 42.308 0.00 0.00 0.00 2.69
3784 5244 6.989169 CAGAAGAGTGATCCAGTTTATAAGGG 59.011 42.308 0.00 0.00 0.00 3.95
3785 5245 6.903534 AGAAGAGTGATCCAGTTTATAAGGGA 59.096 38.462 5.41 5.41 0.00 4.20
3786 5246 7.403231 AGAAGAGTGATCCAGTTTATAAGGGAA 59.597 37.037 6.67 0.00 32.25 3.97
3787 5247 7.510675 AGAGTGATCCAGTTTATAAGGGAAA 57.489 36.000 6.67 0.00 32.25 3.13
3788 5248 7.339482 AGAGTGATCCAGTTTATAAGGGAAAC 58.661 38.462 6.67 8.05 37.11 2.78
3801 5261 0.806868 GGGAAACCGGATCGAAAACC 59.193 55.000 9.46 0.00 43.64 3.27
3802 5262 1.612462 GGGAAACCGGATCGAAAACCT 60.612 52.381 9.46 0.00 43.64 3.50
3803 5263 2.355007 GGGAAACCGGATCGAAAACCTA 60.355 50.000 9.46 0.00 43.64 3.08
3804 5264 3.337358 GGAAACCGGATCGAAAACCTAA 58.663 45.455 9.46 0.00 0.00 2.69
3805 5265 3.752747 GGAAACCGGATCGAAAACCTAAA 59.247 43.478 9.46 0.00 0.00 1.85
3806 5266 4.378770 GGAAACCGGATCGAAAACCTAAAC 60.379 45.833 9.46 0.00 0.00 2.01
3807 5267 3.405823 ACCGGATCGAAAACCTAAACA 57.594 42.857 9.46 0.00 0.00 2.83
3808 5268 3.742385 ACCGGATCGAAAACCTAAACAA 58.258 40.909 9.46 0.00 0.00 2.83
3809 5269 3.749609 ACCGGATCGAAAACCTAAACAAG 59.250 43.478 9.46 0.00 0.00 3.16
3810 5270 3.749609 CCGGATCGAAAACCTAAACAAGT 59.250 43.478 0.00 0.00 0.00 3.16
3811 5271 4.214758 CCGGATCGAAAACCTAAACAAGTT 59.785 41.667 0.00 0.00 0.00 2.66
3812 5272 5.144359 CGGATCGAAAACCTAAACAAGTTG 58.856 41.667 0.00 0.00 0.00 3.16
3813 5273 5.049954 CGGATCGAAAACCTAAACAAGTTGA 60.050 40.000 10.54 0.00 0.00 3.18
3814 5274 6.140786 GGATCGAAAACCTAAACAAGTTGAC 58.859 40.000 10.54 0.00 0.00 3.18
3815 5275 5.488645 TCGAAAACCTAAACAAGTTGACC 57.511 39.130 10.54 0.00 0.00 4.02
3816 5276 4.336153 TCGAAAACCTAAACAAGTTGACCC 59.664 41.667 10.54 0.00 0.00 4.46
3817 5277 4.603985 GAAAACCTAAACAAGTTGACCCG 58.396 43.478 10.54 0.00 0.00 5.28
3818 5278 3.286329 AACCTAAACAAGTTGACCCGT 57.714 42.857 10.54 0.00 0.00 5.28
3819 5279 3.286329 ACCTAAACAAGTTGACCCGTT 57.714 42.857 10.54 0.00 0.00 4.44
3820 5280 3.623703 ACCTAAACAAGTTGACCCGTTT 58.376 40.909 10.54 1.80 35.79 3.60
3821 5281 4.779696 ACCTAAACAAGTTGACCCGTTTA 58.220 39.130 10.54 2.92 33.79 2.01
3822 5282 5.379187 ACCTAAACAAGTTGACCCGTTTAT 58.621 37.500 10.54 0.00 34.35 1.40
3823 5283 6.532826 ACCTAAACAAGTTGACCCGTTTATA 58.467 36.000 10.54 0.00 34.35 0.98
3824 5284 6.997476 ACCTAAACAAGTTGACCCGTTTATAA 59.003 34.615 10.54 0.00 34.35 0.98
3825 5285 7.173735 ACCTAAACAAGTTGACCCGTTTATAAG 59.826 37.037 10.54 0.00 34.35 1.73
3826 5286 5.952526 AACAAGTTGACCCGTTTATAAGG 57.047 39.130 10.54 0.00 0.00 2.69
3842 5302 2.598099 GGGAAACCGGGCCGAAAA 60.598 61.111 30.79 0.00 43.64 2.29
3843 5303 2.646719 GGAAACCGGGCCGAAAAC 59.353 61.111 30.79 15.50 0.00 2.43
3844 5304 2.646719 GAAACCGGGCCGAAAACC 59.353 61.111 30.79 8.55 0.00 3.27
3849 5309 2.357275 CGGGCCGAAAACCGTACA 60.357 61.111 24.41 0.00 44.85 2.90
3850 5310 1.960250 CGGGCCGAAAACCGTACAA 60.960 57.895 24.41 0.00 44.85 2.41
3851 5311 1.575922 GGGCCGAAAACCGTACAAC 59.424 57.895 0.00 0.00 36.31 3.32
3852 5312 1.165284 GGGCCGAAAACCGTACAACA 61.165 55.000 0.00 0.00 36.31 3.33
3853 5313 0.662085 GGCCGAAAACCGTACAACAA 59.338 50.000 0.00 0.00 36.31 2.83
3854 5314 1.334329 GGCCGAAAACCGTACAACAAG 60.334 52.381 0.00 0.00 36.31 3.16
3855 5315 1.334329 GCCGAAAACCGTACAACAAGG 60.334 52.381 0.00 0.00 36.31 3.61
3856 5316 1.941975 CCGAAAACCGTACAACAAGGT 59.058 47.619 0.00 0.00 41.27 3.50
3858 5318 3.559242 CCGAAAACCGTACAACAAGGTTA 59.441 43.478 2.98 0.00 46.84 2.85
3859 5319 4.517287 CGAAAACCGTACAACAAGGTTAC 58.483 43.478 2.98 1.40 46.84 2.50
3860 5320 4.033817 CGAAAACCGTACAACAAGGTTACA 59.966 41.667 2.98 0.00 46.84 2.41
3861 5321 5.447010 CGAAAACCGTACAACAAGGTTACAA 60.447 40.000 2.98 0.00 46.84 2.41
3862 5322 5.488645 AAACCGTACAACAAGGTTACAAG 57.511 39.130 2.98 0.00 46.84 3.16
3863 5323 3.469739 ACCGTACAACAAGGTTACAAGG 58.530 45.455 0.00 0.00 35.13 3.61
3864 5324 3.134442 ACCGTACAACAAGGTTACAAGGA 59.866 43.478 0.00 0.00 35.13 3.36
3865 5325 3.744426 CCGTACAACAAGGTTACAAGGAG 59.256 47.826 0.00 0.00 0.00 3.69
3866 5326 4.501915 CCGTACAACAAGGTTACAAGGAGA 60.502 45.833 0.00 0.00 0.00 3.71
3867 5327 5.051816 CGTACAACAAGGTTACAAGGAGAA 58.948 41.667 0.00 0.00 0.00 2.87
3868 5328 5.176958 CGTACAACAAGGTTACAAGGAGAAG 59.823 44.000 0.00 0.00 0.00 2.85
3869 5329 5.367945 ACAACAAGGTTACAAGGAGAAGA 57.632 39.130 0.00 0.00 0.00 2.87
3870 5330 5.368989 ACAACAAGGTTACAAGGAGAAGAG 58.631 41.667 0.00 0.00 0.00 2.85
3871 5331 5.130477 ACAACAAGGTTACAAGGAGAAGAGA 59.870 40.000 0.00 0.00 0.00 3.10
3872 5332 5.888982 ACAAGGTTACAAGGAGAAGAGAA 57.111 39.130 0.00 0.00 0.00 2.87
3873 5333 5.859495 ACAAGGTTACAAGGAGAAGAGAAG 58.141 41.667 0.00 0.00 0.00 2.85
3874 5334 5.602978 ACAAGGTTACAAGGAGAAGAGAAGA 59.397 40.000 0.00 0.00 0.00 2.87
3875 5335 6.099845 ACAAGGTTACAAGGAGAAGAGAAGAA 59.900 38.462 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.750182 GCTGGGGCATACGGCTTTAA 60.750 55.000 0.00 0.00 44.01 1.52
21 22 3.345880 TGGCTTGGCTGGGGCATA 61.346 61.111 0.00 0.00 38.08 3.14
30 31 1.004679 CCCAACATTGTGGCTTGGC 60.005 57.895 0.47 0.00 37.34 4.52
45 46 2.448582 GGTGTGTGACCCAGTCCCA 61.449 63.158 0.00 0.00 39.10 4.37
65 67 2.202544 CTCTGAGAGTGCGCGGAC 60.203 66.667 24.26 24.26 0.00 4.79
68 70 4.127040 AGCCTCTGAGAGTGCGCG 62.127 66.667 8.88 0.00 33.40 6.86
103 106 1.617850 CCTCTTCTGGAGATGGATCGG 59.382 57.143 0.00 0.00 44.45 4.18
129 132 4.988598 CAGGCAAGGTCGGTGCGT 62.989 66.667 0.00 0.00 43.18 5.24
159 162 4.337060 TCTGACGTCGTGGTGGCG 62.337 66.667 11.62 0.00 0.00 5.69
169 172 2.279918 GGTGGCGTTGTCTGACGT 60.280 61.111 2.98 0.00 44.50 4.34
177 180 1.597797 AATGCAGGATGGTGGCGTTG 61.598 55.000 0.00 0.00 35.59 4.10
237 244 2.559698 TCAGGAGCATCGTTTTGGAA 57.440 45.000 0.00 0.00 34.37 3.53
254 264 1.124780 TTGGTGTCGTTCTCCCTTCA 58.875 50.000 0.00 0.00 0.00 3.02
256 266 1.202770 CCTTTGGTGTCGTTCTCCCTT 60.203 52.381 0.00 0.00 0.00 3.95
312 345 0.249447 TGCAGGTCACGTCAACTCAG 60.249 55.000 0.00 0.00 0.00 3.35
313 346 0.176910 TTGCAGGTCACGTCAACTCA 59.823 50.000 0.00 0.00 0.00 3.41
417 451 2.180862 CGAGATCAGGACGAGGCGA 61.181 63.158 0.00 0.00 0.00 5.54
428 462 0.967380 TCCAGACAGCTGCGAGATCA 60.967 55.000 15.27 0.00 40.91 2.92
531 565 3.353029 CGTGGATGTTGCGGCACA 61.353 61.111 0.05 4.86 0.00 4.57
539 573 2.993899 GTCGATTCTTCACGTGGATGTT 59.006 45.455 17.00 0.00 0.00 2.71
599 1530 3.747976 GTTGGCGATGGTGGGCAC 61.748 66.667 0.00 0.00 39.90 5.01
646 1577 4.148825 GGCTCCCTCGTCGTGCAT 62.149 66.667 0.00 0.00 0.00 3.96
792 1730 2.692557 CCACAACCCACAATGAAAGACA 59.307 45.455 0.00 0.00 0.00 3.41
800 1747 1.603455 CGGCTCCACAACCCACAAT 60.603 57.895 0.00 0.00 0.00 2.71
889 1836 0.183731 ATTCTTGAATCGCCCCCTCC 59.816 55.000 0.00 0.00 0.00 4.30
896 1843 4.494199 CGTGGTAGGAAATTCTTGAATCGC 60.494 45.833 0.00 0.00 0.00 4.58
897 1844 4.868171 TCGTGGTAGGAAATTCTTGAATCG 59.132 41.667 0.00 0.00 0.00 3.34
903 1850 5.866207 AGTCTTTCGTGGTAGGAAATTCTT 58.134 37.500 0.00 0.00 32.44 2.52
905 1852 7.977853 TGTATAGTCTTTCGTGGTAGGAAATTC 59.022 37.037 0.00 0.00 32.44 2.17
915 1862 4.665833 TGGGATGTATAGTCTTTCGTGG 57.334 45.455 0.00 0.00 0.00 4.94
927 1890 8.617491 TCCATAATTGAGAATGATGGGATGTAT 58.383 33.333 11.37 0.00 0.00 2.29
967 1930 8.533569 TTTTGTTTCTACCAAGAGAAGGAAAT 57.466 30.769 0.00 0.00 36.80 2.17
1118 2086 2.510928 ACTACACCGTAAGCTCCTCT 57.489 50.000 0.00 0.00 0.00 3.69
1132 2100 4.650734 TGTTCATGGATGAGCAAACTACA 58.349 39.130 3.90 0.00 43.50 2.74
1205 2173 0.603707 CAGTGCATCCTCGTGGTTGT 60.604 55.000 14.32 0.00 35.89 3.32
1206 2174 0.320683 TCAGTGCATCCTCGTGGTTG 60.321 55.000 9.70 9.70 36.41 3.77
1308 2276 3.913163 AGACATCCTTGAAGTTCCTCCTT 59.087 43.478 0.00 0.00 0.00 3.36
1333 2301 2.124983 CATGAGTCCGGCCACCAG 60.125 66.667 2.24 0.00 0.00 4.00
1339 2307 2.509336 CGTGTCCATGAGTCCGGC 60.509 66.667 0.00 0.00 0.00 6.13
1343 2311 1.804372 GCAGATCCGTGTCCATGAGTC 60.804 57.143 0.00 0.00 0.00 3.36
1416 2384 2.484264 ACTGTCGCATACCTGAAAAAGC 59.516 45.455 0.00 0.00 0.00 3.51
1454 2422 5.005107 GCAAGTGTCAAGCAAAAAGAAAGAG 59.995 40.000 0.00 0.00 0.00 2.85
1501 2472 9.500785 TGAATGAACTAACTTGTGACATAATGA 57.499 29.630 0.00 0.00 0.00 2.57
1512 2485 6.205464 ACATGAGGTGTGAATGAACTAACTTG 59.795 38.462 0.00 0.00 40.28 3.16
1544 2521 4.217550 GCAAGCCCAAAGACATTACTTACA 59.782 41.667 0.00 0.00 0.00 2.41
1546 2523 4.662278 AGCAAGCCCAAAGACATTACTTA 58.338 39.130 0.00 0.00 0.00 2.24
1570 2547 7.142021 ACTAATGTGATTGACTATGTCTAGCG 58.858 38.462 0.00 0.00 33.15 4.26
1588 2565 7.563188 TGGGCATTACATCCAAATAACTAATGT 59.437 33.333 0.00 0.00 35.00 2.71
1592 2569 6.493115 CCATGGGCATTACATCCAAATAACTA 59.507 38.462 2.85 0.00 33.90 2.24
1619 2596 0.530744 TCGTGTCGGGAGGAAGAATG 59.469 55.000 0.00 0.00 0.00 2.67
1647 2624 4.575885 TGAAGGCTGTAACATTACCAGAC 58.424 43.478 0.00 0.00 32.72 3.51
1713 2701 0.253044 TGGCAACACCTAGGCATCTC 59.747 55.000 9.30 0.00 46.17 2.75
1727 2715 3.159213 ACAAGATCTCACCAATGGCAA 57.841 42.857 0.00 0.00 0.00 4.52
1731 2719 7.065085 ACTCGATTAAACAAGATCTCACCAATG 59.935 37.037 0.00 0.00 0.00 2.82
1869 2869 5.689383 TCATTCTCTGGCAACTTAACAAC 57.311 39.130 0.00 0.00 37.61 3.32
1913 2913 4.553547 GCCATCGCAGATATTGAAACAGTC 60.554 45.833 0.00 0.00 45.12 3.51
1954 3363 2.821437 ACTATCCGGGTGCAGCTATAT 58.179 47.619 16.65 8.96 0.00 0.86
2194 3608 5.722021 AAAATGGTCGGCAGAAAAACTAT 57.278 34.783 0.00 0.00 0.00 2.12
2440 3879 1.153389 GCAGCTGAGAAGGAGCTCC 60.153 63.158 26.22 26.22 45.24 4.70
2446 3885 0.320247 AGTTGTCGCAGCTGAGAAGG 60.320 55.000 22.30 2.39 0.00 3.46
2449 3888 1.134995 CCATAGTTGTCGCAGCTGAGA 60.135 52.381 20.43 18.51 0.00 3.27
2504 3943 1.364626 CGGCCAAGTAGCTCAGCAAG 61.365 60.000 2.24 0.00 0.00 4.01
2619 4058 1.334054 CTTGCGAGCTTTCATGTTGC 58.666 50.000 0.00 0.00 0.00 4.17
2795 4234 0.657840 GCGCTGGGATCATACAACAC 59.342 55.000 0.00 0.00 0.00 3.32
2796 4235 0.251634 TGCGCTGGGATCATACAACA 59.748 50.000 9.73 0.00 0.00 3.33
2798 4237 1.742831 GTTTGCGCTGGGATCATACAA 59.257 47.619 9.73 0.00 0.00 2.41
2913 4356 2.233566 ACCATCCTGGCAGCCTCAA 61.234 57.895 14.15 0.00 42.67 3.02
2981 4424 3.567579 ATCCTGTTGTGGGCGTGGG 62.568 63.158 0.00 0.00 0.00 4.61
2982 4425 2.034066 ATCCTGTTGTGGGCGTGG 59.966 61.111 0.00 0.00 0.00 4.94
2983 4426 0.606401 AAGATCCTGTTGTGGGCGTG 60.606 55.000 0.00 0.00 0.00 5.34
2984 4427 0.321653 GAAGATCCTGTTGTGGGCGT 60.322 55.000 0.00 0.00 0.00 5.68
2985 4428 0.321564 TGAAGATCCTGTTGTGGGCG 60.322 55.000 0.00 0.00 0.00 6.13
2986 4429 1.168714 GTGAAGATCCTGTTGTGGGC 58.831 55.000 0.00 0.00 0.00 5.36
3087 4535 2.238898 AGGGGTCTTATTGTGCACCTAC 59.761 50.000 15.69 3.27 0.00 3.18
3110 4559 2.484264 GACCCACAGACAGAAAAATCCG 59.516 50.000 0.00 0.00 0.00 4.18
3122 4573 3.840991 ACTACAAGTAGTGACCCACAGA 58.159 45.455 11.81 0.00 44.11 3.41
3151 4605 7.159322 ACTCTACTTCCACAACATAGTAGTG 57.841 40.000 0.00 0.00 40.45 2.74
3158 4612 5.552870 ACAGAACTCTACTTCCACAACAT 57.447 39.130 0.00 0.00 0.00 2.71
3178 4632 7.606456 GTCTTCATAACTGAATCCTTGGTAACA 59.394 37.037 0.00 0.00 42.62 2.41
3183 4637 4.034510 GCGTCTTCATAACTGAATCCTTGG 59.965 45.833 0.00 0.00 40.52 3.61
3246 4705 7.659390 ACATAGAGCAGCCTCTTATATTTCAAC 59.341 37.037 0.00 0.00 46.16 3.18
3254 4713 7.178573 TGTCTATACATAGAGCAGCCTCTTAT 58.821 38.462 0.00 0.00 46.16 1.73
3256 4715 5.389520 TGTCTATACATAGAGCAGCCTCTT 58.610 41.667 0.00 0.00 46.16 2.85
3278 4737 3.152341 AGGCCACTTGAAAGTTGAGATG 58.848 45.455 5.01 0.00 37.08 2.90
3317 4777 6.183360 GCAGATTTGAAGGTAATCACTCTGAC 60.183 42.308 15.11 7.13 39.47 3.51
3326 4786 6.494835 AGAAACAAGGCAGATTTGAAGGTAAT 59.505 34.615 0.00 0.00 0.00 1.89
3334 4794 5.835257 TCTTGAAGAAACAAGGCAGATTTG 58.165 37.500 0.00 0.00 44.84 2.32
3342 4802 6.867662 TTTCTAGCTCTTGAAGAAACAAGG 57.132 37.500 4.80 0.00 44.84 3.61
3370 4830 2.143122 ACAGAAAGCACCATACACACG 58.857 47.619 0.00 0.00 0.00 4.49
3383 4843 9.959749 TTTATACACTTTTAGCCAAACAGAAAG 57.040 29.630 0.00 0.00 34.41 2.62
3389 4849 8.780249 TCAGAGTTTATACACTTTTAGCCAAAC 58.220 33.333 0.00 0.00 0.00 2.93
3397 4857 6.128526 GCGAGCTTCAGAGTTTATACACTTTT 60.129 38.462 0.00 0.00 0.00 2.27
3421 4881 5.695816 TGGTTCTGAATTTGCAAATTACAGC 59.304 36.000 32.52 25.93 38.64 4.40
3460 4920 3.257624 AGGACTACTAACTTTGACCACCG 59.742 47.826 0.00 0.00 0.00 4.94
3475 4935 2.789323 TCCCCAGGGAATAGGACTAC 57.211 55.000 7.25 0.00 42.05 2.73
3493 4953 5.351740 CGGAATTCTCCCAAGAAGTAGTTTC 59.648 44.000 5.23 0.00 44.53 2.78
3508 4968 0.676736 AGCGGGAGATCGGAATTCTC 59.323 55.000 5.23 0.85 39.12 2.87
3525 4985 3.403038 ACCGCATATTGATTACTCCAGC 58.597 45.455 0.00 0.00 0.00 4.85
3551 5011 8.915871 TTGCTCAATTATTTATTCTGACAAGC 57.084 30.769 0.00 0.00 0.00 4.01
3580 5040 9.066892 GTAATATTTCCTCATACCATTGCTTGA 57.933 33.333 0.00 0.00 0.00 3.02
3626 5086 3.367087 CGAGTTTGTCGGAAGGTAGATGT 60.367 47.826 0.00 0.00 45.58 3.06
3627 5087 3.179830 CGAGTTTGTCGGAAGGTAGATG 58.820 50.000 0.00 0.00 45.58 2.90
3628 5088 3.505464 CGAGTTTGTCGGAAGGTAGAT 57.495 47.619 0.00 0.00 45.58 1.98
3638 5098 5.547258 AGTTGCTCTAACACGAGTTTGTCG 61.547 45.833 2.93 0.12 44.66 4.35
3639 5099 3.802685 AGTTGCTCTAACACGAGTTTGTC 59.197 43.478 2.93 0.35 41.88 3.18
3640 5100 3.793559 AGTTGCTCTAACACGAGTTTGT 58.206 40.909 2.93 0.00 41.88 2.83
3641 5101 4.051922 AGAGTTGCTCTAACACGAGTTTG 58.948 43.478 2.93 1.92 39.28 2.93
3642 5102 4.323553 AGAGTTGCTCTAACACGAGTTT 57.676 40.909 2.93 0.00 39.28 2.66
3643 5103 4.616373 GCTAGAGTTGCTCTAACACGAGTT 60.616 45.833 3.19 3.19 41.74 3.01
3644 5104 3.119779 GCTAGAGTTGCTCTAACACGAGT 60.120 47.826 7.22 0.00 41.74 4.18
3645 5105 3.119814 TGCTAGAGTTGCTCTAACACGAG 60.120 47.826 7.22 0.00 41.74 4.18
3646 5106 2.817844 TGCTAGAGTTGCTCTAACACGA 59.182 45.455 7.22 0.00 41.74 4.35
3647 5107 3.119814 TCTGCTAGAGTTGCTCTAACACG 60.120 47.826 7.22 4.46 41.74 4.49
3648 5108 4.442375 TCTGCTAGAGTTGCTCTAACAC 57.558 45.455 7.22 1.94 41.74 3.32
3649 5109 4.679106 GCATCTGCTAGAGTTGCTCTAACA 60.679 45.833 13.52 7.86 41.74 2.41
3650 5110 3.801594 GCATCTGCTAGAGTTGCTCTAAC 59.198 47.826 13.52 4.03 41.74 2.34
3651 5111 3.489908 CGCATCTGCTAGAGTTGCTCTAA 60.490 47.826 16.38 0.00 41.74 2.10
3652 5112 2.033927 CGCATCTGCTAGAGTTGCTCTA 59.966 50.000 16.38 5.84 42.91 2.43
3653 5113 1.202394 CGCATCTGCTAGAGTTGCTCT 60.202 52.381 16.38 4.02 42.91 4.09
3654 5114 1.207390 CGCATCTGCTAGAGTTGCTC 58.793 55.000 16.38 0.00 42.91 4.26
3655 5115 0.534412 ACGCATCTGCTAGAGTTGCT 59.466 50.000 16.38 7.13 42.91 3.91
3656 5116 0.926846 GACGCATCTGCTAGAGTTGC 59.073 55.000 0.00 4.76 42.03 4.17
3657 5117 2.284263 TGACGCATCTGCTAGAGTTG 57.716 50.000 0.00 0.00 39.32 3.16
3658 5118 3.533606 AATGACGCATCTGCTAGAGTT 57.466 42.857 0.00 0.00 39.32 3.01
3659 5119 3.533606 AAATGACGCATCTGCTAGAGT 57.466 42.857 0.00 0.00 39.32 3.24
3660 5120 4.987285 ACATAAATGACGCATCTGCTAGAG 59.013 41.667 0.00 0.00 39.32 2.43
3661 5121 4.948847 ACATAAATGACGCATCTGCTAGA 58.051 39.130 0.00 0.00 39.32 2.43
3662 5122 6.957984 ATACATAAATGACGCATCTGCTAG 57.042 37.500 0.09 0.00 39.32 3.42
3663 5123 7.728847 AAATACATAAATGACGCATCTGCTA 57.271 32.000 0.09 0.00 39.32 3.49
3664 5124 6.624352 AAATACATAAATGACGCATCTGCT 57.376 33.333 0.09 0.00 39.32 4.24
3665 5125 7.684062 AAAAATACATAAATGACGCATCTGC 57.316 32.000 0.00 0.00 37.78 4.26
3694 5154 4.016444 CCTTCCCCGATGATTCTCAAAAA 58.984 43.478 0.00 0.00 0.00 1.94
3695 5155 3.265737 TCCTTCCCCGATGATTCTCAAAA 59.734 43.478 0.00 0.00 0.00 2.44
3696 5156 2.843730 TCCTTCCCCGATGATTCTCAAA 59.156 45.455 0.00 0.00 0.00 2.69
3697 5157 2.435805 CTCCTTCCCCGATGATTCTCAA 59.564 50.000 0.00 0.00 0.00 3.02
3698 5158 2.042464 CTCCTTCCCCGATGATTCTCA 58.958 52.381 0.00 0.00 0.00 3.27
3699 5159 2.036604 GACTCCTTCCCCGATGATTCTC 59.963 54.545 0.00 0.00 0.00 2.87
3700 5160 2.043227 GACTCCTTCCCCGATGATTCT 58.957 52.381 0.00 0.00 0.00 2.40
3701 5161 1.070914 GGACTCCTTCCCCGATGATTC 59.929 57.143 0.00 0.00 38.70 2.52
3702 5162 1.132500 GGACTCCTTCCCCGATGATT 58.868 55.000 0.00 0.00 38.70 2.57
3703 5163 2.841595 GGACTCCTTCCCCGATGAT 58.158 57.895 0.00 0.00 38.70 2.45
3704 5164 4.375406 GGACTCCTTCCCCGATGA 57.625 61.111 0.00 0.00 38.70 2.92
3714 5174 2.350863 ATTCAGGTGGAAGGACTCCT 57.649 50.000 0.00 0.00 45.64 3.69
3715 5175 6.441088 AATATATTCAGGTGGAAGGACTCC 57.559 41.667 0.00 0.00 45.64 3.85
3716 5176 9.660180 GAATAATATATTCAGGTGGAAGGACTC 57.340 37.037 0.00 0.00 39.30 3.36
3717 5177 9.170890 TGAATAATATATTCAGGTGGAAGGACT 57.829 33.333 0.00 0.00 39.30 3.85
3718 5178 9.793259 TTGAATAATATATTCAGGTGGAAGGAC 57.207 33.333 0.00 0.00 39.30 3.85
3724 5184 9.643693 GCCATTTTGAATAATATATTCAGGTGG 57.356 33.333 21.19 21.19 38.98 4.61
3725 5185 9.643693 GGCCATTTTGAATAATATATTCAGGTG 57.356 33.333 0.00 11.10 38.98 4.00
3726 5186 9.378504 TGGCCATTTTGAATAATATATTCAGGT 57.621 29.630 0.00 2.24 38.98 4.00
3749 5209 2.923121 TCACTCTTCTGGCATAATGGC 58.077 47.619 0.00 0.00 44.03 4.40
3750 5210 4.070716 GGATCACTCTTCTGGCATAATGG 58.929 47.826 0.00 0.00 0.00 3.16
3751 5211 4.711399 TGGATCACTCTTCTGGCATAATG 58.289 43.478 0.00 0.00 0.00 1.90
3752 5212 4.411540 ACTGGATCACTCTTCTGGCATAAT 59.588 41.667 0.00 0.00 0.00 1.28
3753 5213 3.776969 ACTGGATCACTCTTCTGGCATAA 59.223 43.478 0.00 0.00 0.00 1.90
3754 5214 3.378512 ACTGGATCACTCTTCTGGCATA 58.621 45.455 0.00 0.00 0.00 3.14
3755 5215 2.194859 ACTGGATCACTCTTCTGGCAT 58.805 47.619 0.00 0.00 0.00 4.40
3756 5216 1.649321 ACTGGATCACTCTTCTGGCA 58.351 50.000 0.00 0.00 0.00 4.92
3757 5217 2.777832 AACTGGATCACTCTTCTGGC 57.222 50.000 0.00 0.00 0.00 4.85
3758 5218 6.989169 CCTTATAAACTGGATCACTCTTCTGG 59.011 42.308 0.00 0.00 0.00 3.86
3759 5219 6.989169 CCCTTATAAACTGGATCACTCTTCTG 59.011 42.308 0.00 0.00 0.00 3.02
3760 5220 6.903534 TCCCTTATAAACTGGATCACTCTTCT 59.096 38.462 0.00 0.00 0.00 2.85
3761 5221 7.125792 TCCCTTATAAACTGGATCACTCTTC 57.874 40.000 0.00 0.00 0.00 2.87
3762 5222 7.510675 TTCCCTTATAAACTGGATCACTCTT 57.489 36.000 0.00 0.00 0.00 2.85
3763 5223 7.339482 GTTTCCCTTATAAACTGGATCACTCT 58.661 38.462 0.00 0.00 34.66 3.24
3764 5224 6.542735 GGTTTCCCTTATAAACTGGATCACTC 59.457 42.308 0.00 0.00 37.09 3.51
3765 5225 6.424032 GGTTTCCCTTATAAACTGGATCACT 58.576 40.000 0.00 0.00 37.09 3.41
3766 5226 5.296035 CGGTTTCCCTTATAAACTGGATCAC 59.704 44.000 0.00 1.58 38.82 3.06
3767 5227 5.433526 CGGTTTCCCTTATAAACTGGATCA 58.566 41.667 0.00 0.00 38.82 2.92
3772 5232 4.510340 CGATCCGGTTTCCCTTATAAACTG 59.490 45.833 0.00 0.00 41.06 3.16
3773 5233 4.406649 TCGATCCGGTTTCCCTTATAAACT 59.593 41.667 0.00 0.00 37.09 2.66
3774 5234 4.696455 TCGATCCGGTTTCCCTTATAAAC 58.304 43.478 0.00 0.00 36.34 2.01
3775 5235 5.356291 TTCGATCCGGTTTCCCTTATAAA 57.644 39.130 0.00 0.00 0.00 1.40
3776 5236 5.356291 TTTCGATCCGGTTTCCCTTATAA 57.644 39.130 0.00 0.00 0.00 0.98
3777 5237 5.118286 GTTTTCGATCCGGTTTCCCTTATA 58.882 41.667 0.00 0.00 0.00 0.98
3778 5238 3.918294 TTTCGATCCGGTTTCCCTTAT 57.082 42.857 0.00 0.00 0.00 1.73
3779 5239 3.337358 GTTTTCGATCCGGTTTCCCTTA 58.663 45.455 0.00 0.00 0.00 2.69
3780 5240 2.156917 GTTTTCGATCCGGTTTCCCTT 58.843 47.619 0.00 0.00 0.00 3.95
3781 5241 1.612462 GGTTTTCGATCCGGTTTCCCT 60.612 52.381 0.00 0.00 0.00 4.20
3782 5242 0.806868 GGTTTTCGATCCGGTTTCCC 59.193 55.000 0.00 0.00 0.00 3.97
3783 5243 1.817357 AGGTTTTCGATCCGGTTTCC 58.183 50.000 0.00 0.00 0.00 3.13
3784 5244 4.213906 TGTTTAGGTTTTCGATCCGGTTTC 59.786 41.667 0.00 0.00 0.00 2.78
3785 5245 4.136051 TGTTTAGGTTTTCGATCCGGTTT 58.864 39.130 0.00 0.00 0.00 3.27
3786 5246 3.742385 TGTTTAGGTTTTCGATCCGGTT 58.258 40.909 0.00 0.00 0.00 4.44
3787 5247 3.405823 TGTTTAGGTTTTCGATCCGGT 57.594 42.857 0.00 0.00 0.00 5.28
3788 5248 3.749609 ACTTGTTTAGGTTTTCGATCCGG 59.250 43.478 0.00 0.00 0.00 5.14
3789 5249 5.049954 TCAACTTGTTTAGGTTTTCGATCCG 60.050 40.000 0.00 0.00 0.00 4.18
3790 5250 6.140786 GTCAACTTGTTTAGGTTTTCGATCC 58.859 40.000 0.00 0.00 0.00 3.36
3791 5251 6.140786 GGTCAACTTGTTTAGGTTTTCGATC 58.859 40.000 0.00 0.00 0.00 3.69
3792 5252 5.009310 GGGTCAACTTGTTTAGGTTTTCGAT 59.991 40.000 0.00 0.00 0.00 3.59
3793 5253 4.336153 GGGTCAACTTGTTTAGGTTTTCGA 59.664 41.667 0.00 0.00 0.00 3.71
3794 5254 4.603985 GGGTCAACTTGTTTAGGTTTTCG 58.396 43.478 0.00 0.00 0.00 3.46
3795 5255 4.096833 ACGGGTCAACTTGTTTAGGTTTTC 59.903 41.667 0.00 0.00 0.00 2.29
3796 5256 4.018490 ACGGGTCAACTTGTTTAGGTTTT 58.982 39.130 0.00 0.00 0.00 2.43
3797 5257 3.623703 ACGGGTCAACTTGTTTAGGTTT 58.376 40.909 0.00 0.00 0.00 3.27
3798 5258 3.286329 ACGGGTCAACTTGTTTAGGTT 57.714 42.857 0.00 0.00 0.00 3.50
3799 5259 3.286329 AACGGGTCAACTTGTTTAGGT 57.714 42.857 0.00 0.00 0.00 3.08
3800 5260 5.952526 ATAAACGGGTCAACTTGTTTAGG 57.047 39.130 12.48 0.00 39.37 2.69
3801 5261 7.361457 CCCTTATAAACGGGTCAACTTGTTTAG 60.361 40.741 2.21 5.27 39.37 1.85
3802 5262 6.430616 CCCTTATAAACGGGTCAACTTGTTTA 59.569 38.462 2.21 10.58 40.04 2.01
3803 5263 5.242171 CCCTTATAAACGGGTCAACTTGTTT 59.758 40.000 2.21 7.87 38.10 2.83
3804 5264 4.763279 CCCTTATAAACGGGTCAACTTGTT 59.237 41.667 2.21 0.00 35.65 2.83
3805 5265 4.041938 TCCCTTATAAACGGGTCAACTTGT 59.958 41.667 9.12 0.00 41.40 3.16
3806 5266 4.581868 TCCCTTATAAACGGGTCAACTTG 58.418 43.478 9.12 0.00 41.40 3.16
3807 5267 4.914177 TCCCTTATAAACGGGTCAACTT 57.086 40.909 9.12 0.00 41.40 2.66
3808 5268 4.914177 TTCCCTTATAAACGGGTCAACT 57.086 40.909 9.12 0.00 41.40 3.16
3809 5269 4.156556 GGTTTCCCTTATAAACGGGTCAAC 59.843 45.833 9.12 11.76 41.40 3.18
3810 5270 4.334552 GGTTTCCCTTATAAACGGGTCAA 58.665 43.478 9.12 2.70 41.40 3.18
3811 5271 3.619487 CGGTTTCCCTTATAAACGGGTCA 60.619 47.826 9.12 0.00 41.40 4.02
3812 5272 2.938451 CGGTTTCCCTTATAAACGGGTC 59.062 50.000 9.12 3.17 41.40 4.46
3813 5273 2.356022 CCGGTTTCCCTTATAAACGGGT 60.356 50.000 13.91 0.00 45.28 5.28
3814 5274 2.291365 CCGGTTTCCCTTATAAACGGG 58.709 52.381 9.84 9.84 45.16 5.28
3815 5275 2.291365 CCCGGTTTCCCTTATAAACGG 58.709 52.381 0.00 4.42 37.64 4.44
3816 5276 1.672363 GCCCGGTTTCCCTTATAAACG 59.328 52.381 0.00 0.00 37.64 3.60
3817 5277 2.026641 GGCCCGGTTTCCCTTATAAAC 58.973 52.381 0.00 0.00 36.34 2.01
3818 5278 1.408544 CGGCCCGGTTTCCCTTATAAA 60.409 52.381 0.00 0.00 0.00 1.40
3819 5279 0.180878 CGGCCCGGTTTCCCTTATAA 59.819 55.000 0.00 0.00 0.00 0.98
3820 5280 0.690411 TCGGCCCGGTTTCCCTTATA 60.690 55.000 1.90 0.00 0.00 0.98
3821 5281 1.564483 TTCGGCCCGGTTTCCCTTAT 61.564 55.000 1.90 0.00 0.00 1.73
3822 5282 1.776975 TTTCGGCCCGGTTTCCCTTA 61.777 55.000 1.90 0.00 0.00 2.69
3823 5283 2.643788 TTTTCGGCCCGGTTTCCCTT 62.644 55.000 1.90 0.00 0.00 3.95
3824 5284 3.136043 TTTTCGGCCCGGTTTCCCT 62.136 57.895 1.90 0.00 0.00 4.20
3825 5285 2.598099 TTTTCGGCCCGGTTTCCC 60.598 61.111 1.90 0.00 0.00 3.97
3826 5286 2.646719 GTTTTCGGCCCGGTTTCC 59.353 61.111 1.90 0.00 0.00 3.13
3827 5287 2.646719 GGTTTTCGGCCCGGTTTC 59.353 61.111 1.90 0.00 0.00 2.78
3828 5288 3.289062 CGGTTTTCGGCCCGGTTT 61.289 61.111 1.90 0.00 40.54 3.27
3833 5293 1.165284 TGTTGTACGGTTTTCGGCCC 61.165 55.000 0.00 0.00 44.45 5.80
3834 5294 0.662085 TTGTTGTACGGTTTTCGGCC 59.338 50.000 0.00 0.00 44.45 6.13
3835 5295 1.334329 CCTTGTTGTACGGTTTTCGGC 60.334 52.381 0.00 0.00 44.45 5.54
3836 5296 1.941975 ACCTTGTTGTACGGTTTTCGG 59.058 47.619 0.00 0.00 44.45 4.30
3837 5297 3.678915 AACCTTGTTGTACGGTTTTCG 57.321 42.857 0.00 0.00 37.76 3.46
3838 5298 5.482686 TGTAACCTTGTTGTACGGTTTTC 57.517 39.130 7.33 3.61 41.09 2.29
3839 5299 5.163632 CCTTGTAACCTTGTTGTACGGTTTT 60.164 40.000 7.33 0.00 41.09 2.43
3840 5300 4.336153 CCTTGTAACCTTGTTGTACGGTTT 59.664 41.667 7.33 0.00 41.09 3.27
3841 5301 3.878699 CCTTGTAACCTTGTTGTACGGTT 59.121 43.478 7.21 7.21 43.10 4.44
3842 5302 3.134442 TCCTTGTAACCTTGTTGTACGGT 59.866 43.478 0.00 0.00 0.00 4.83
3843 5303 3.731089 TCCTTGTAACCTTGTTGTACGG 58.269 45.455 0.00 0.00 0.00 4.02
3844 5304 4.624015 TCTCCTTGTAACCTTGTTGTACG 58.376 43.478 0.00 0.00 0.00 3.67
3845 5305 6.285990 TCTTCTCCTTGTAACCTTGTTGTAC 58.714 40.000 0.00 0.00 0.00 2.90
3846 5306 6.325545 TCTCTTCTCCTTGTAACCTTGTTGTA 59.674 38.462 0.00 0.00 0.00 2.41
3847 5307 5.130477 TCTCTTCTCCTTGTAACCTTGTTGT 59.870 40.000 0.00 0.00 0.00 3.32
3848 5308 5.611374 TCTCTTCTCCTTGTAACCTTGTTG 58.389 41.667 0.00 0.00 0.00 3.33
3849 5309 5.888982 TCTCTTCTCCTTGTAACCTTGTT 57.111 39.130 0.00 0.00 0.00 2.83
3850 5310 5.602978 TCTTCTCTTCTCCTTGTAACCTTGT 59.397 40.000 0.00 0.00 0.00 3.16
3851 5311 6.102897 TCTTCTCTTCTCCTTGTAACCTTG 57.897 41.667 0.00 0.00 0.00 3.61
3852 5312 6.749036 TTCTTCTCTTCTCCTTGTAACCTT 57.251 37.500 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.