Multiple sequence alignment - TraesCS5D01G303000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G303000 chr5D 100.000 4808 0 0 1 4808 398822086 398817279 0.000000e+00 8879.0
1 TraesCS5D01G303000 chr5D 87.500 80 9 1 1211 1290 398869471 398869393 1.840000e-14 91.6
2 TraesCS5D01G303000 chr5D 84.746 59 8 1 4750 4808 398791446 398791389 1.870000e-04 58.4
3 TraesCS5D01G303000 chr5A 89.274 2713 159 58 2108 4756 503873878 503871234 0.000000e+00 3277.0
4 TraesCS5D01G303000 chr5A 89.602 1231 83 19 840 2031 503875125 503873901 0.000000e+00 1522.0
5 TraesCS5D01G303000 chr5A 90.291 309 17 5 995 1290 503930040 503929732 4.510000e-105 392.0
6 TraesCS5D01G303000 chr5A 93.258 89 6 0 3404 3492 503791646 503791558 1.090000e-26 132.0
7 TraesCS5D01G303000 chr5A 88.750 80 8 1 1211 1290 503933700 503933622 3.960000e-16 97.1
8 TraesCS5D01G303000 chr5A 89.286 56 5 1 4750 4805 503791215 503791161 8.630000e-08 69.4
9 TraesCS5D01G303000 chr5B 88.722 1862 115 26 840 2664 478933093 478931290 0.000000e+00 2187.0
10 TraesCS5D01G303000 chr5B 91.441 1110 54 25 2734 3833 478931202 478930124 0.000000e+00 1485.0
11 TraesCS5D01G303000 chr5B 89.394 198 20 1 3580 3777 479034510 479034314 1.030000e-61 248.0
12 TraesCS5D01G303000 chr5B 90.526 190 9 4 3841 4024 478929998 478929812 4.810000e-60 243.0
13 TraesCS5D01G303000 chr5B 88.679 159 9 1 995 1144 479033513 479033355 8.220000e-43 185.0
14 TraesCS5D01G303000 chr5B 82.653 196 29 4 3582 3775 479189278 479189086 8.280000e-38 169.0
15 TraesCS5D01G303000 chr5B 89.855 69 7 0 1222 1290 479037869 479037801 6.630000e-14 89.8
16 TraesCS5D01G303000 chr5B 85.507 69 10 0 1222 1290 479032941 479032873 6.670000e-09 73.1
17 TraesCS5D01G303000 chr5B 82.540 63 9 2 4491 4553 552754112 552754172 2.000000e-03 54.7
18 TraesCS5D01G303000 chr3D 96.679 843 23 4 1 840 571549708 571550548 0.000000e+00 1397.0
19 TraesCS5D01G303000 chr3D 76.316 228 46 6 1065 1290 150802329 150802108 1.090000e-21 115.0
20 TraesCS5D01G303000 chr7D 96.568 845 24 5 1 842 223867608 223868450 0.000000e+00 1395.0
21 TraesCS5D01G303000 chr2D 95.976 845 30 3 1 842 60098813 60099656 0.000000e+00 1369.0
22 TraesCS5D01G303000 chr2D 95.249 842 34 6 1 839 182773291 182772453 0.000000e+00 1328.0
23 TraesCS5D01G303000 chr2D 95.244 841 34 5 1 838 8150375 8149538 0.000000e+00 1327.0
24 TraesCS5D01G303000 chr2D 94.656 842 41 4 2 841 573487656 573488495 0.000000e+00 1303.0
25 TraesCS5D01G303000 chr2D 100.000 28 0 0 4526 4553 130773061 130773034 9.000000e-03 52.8
26 TraesCS5D01G303000 chr4D 94.911 845 34 8 1 839 499722953 499723794 0.000000e+00 1314.0
27 TraesCS5D01G303000 chr1D 94.899 843 35 7 5 842 74410562 74411401 0.000000e+00 1312.0
28 TraesCS5D01G303000 chr6D 94.668 844 36 8 1 838 100489139 100489979 0.000000e+00 1301.0
29 TraesCS5D01G303000 chr3B 76.106 226 42 9 1065 1290 222193888 222193675 1.830000e-19 108.0
30 TraesCS5D01G303000 chr3B 94.118 34 2 0 4520 4553 154346487 154346520 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G303000 chr5D 398817279 398822086 4807 True 8879.00 8879 100.000000 1 4808 1 chr5D.!!$R2 4807
1 TraesCS5D01G303000 chr5A 503871234 503875125 3891 True 2399.50 3277 89.438000 840 4756 2 chr5A.!!$R2 3916
2 TraesCS5D01G303000 chr5A 503929732 503933700 3968 True 244.55 392 89.520500 995 1290 2 chr5A.!!$R3 295
3 TraesCS5D01G303000 chr5B 478929812 478933093 3281 True 1305.00 2187 90.229667 840 4024 3 chr5B.!!$R2 3184
4 TraesCS5D01G303000 chr3D 571549708 571550548 840 False 1397.00 1397 96.679000 1 840 1 chr3D.!!$F1 839
5 TraesCS5D01G303000 chr7D 223867608 223868450 842 False 1395.00 1395 96.568000 1 842 1 chr7D.!!$F1 841
6 TraesCS5D01G303000 chr2D 60098813 60099656 843 False 1369.00 1369 95.976000 1 842 1 chr2D.!!$F1 841
7 TraesCS5D01G303000 chr2D 182772453 182773291 838 True 1328.00 1328 95.249000 1 839 1 chr2D.!!$R3 838
8 TraesCS5D01G303000 chr2D 8149538 8150375 837 True 1327.00 1327 95.244000 1 838 1 chr2D.!!$R1 837
9 TraesCS5D01G303000 chr2D 573487656 573488495 839 False 1303.00 1303 94.656000 2 841 1 chr2D.!!$F2 839
10 TraesCS5D01G303000 chr4D 499722953 499723794 841 False 1314.00 1314 94.911000 1 839 1 chr4D.!!$F1 838
11 TraesCS5D01G303000 chr1D 74410562 74411401 839 False 1312.00 1312 94.899000 5 842 1 chr1D.!!$F1 837
12 TraesCS5D01G303000 chr6D 100489139 100489979 840 False 1301.00 1301 94.668000 1 838 1 chr6D.!!$F1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 700 0.171007 GAATGGTGTGATGTTGCCCG 59.829 55.0 0.0 0.0 0.00 6.13 F
2039 2378 0.317269 CTGCCCGAAATGCTAATGCG 60.317 55.0 0.0 0.0 43.34 4.73 F
3343 3792 0.172578 CTCACGGATTCAGGTACGCA 59.827 55.0 0.0 0.0 0.00 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 2744 0.108756 CGGTCGAAGAGTTCCCTTCC 60.109 60.0 0.0 0.0 39.39 3.46 R
3538 4081 0.031449 GAATCGGAGGAAGGCGAGAG 59.969 60.0 0.0 0.0 0.00 3.20 R
4758 6115 0.179029 CCCCACTTTTCCGACAGTGT 60.179 55.0 0.0 0.0 39.09 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
474 478 0.406361 AATTTCCTAACCACCCCGCA 59.594 50.000 0.00 0.00 0.00 5.69
638 644 2.153898 TTGGAGCCTTGGGTGGATGG 62.154 60.000 0.00 0.00 0.00 3.51
641 647 0.251787 GAGCCTTGGGTGGATGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
649 655 4.938575 TGGGTGGATGGTTTATGTTAGT 57.061 40.909 0.00 0.00 0.00 2.24
676 682 0.250684 TCTGCGTTGGATGCTTTGGA 60.251 50.000 0.00 0.00 0.00 3.53
684 690 1.894466 TGGATGCTTTGGAATGGTGTG 59.106 47.619 0.00 0.00 0.00 3.82
693 699 0.532115 GGAATGGTGTGATGTTGCCC 59.468 55.000 0.00 0.00 0.00 5.36
694 700 0.171007 GAATGGTGTGATGTTGCCCG 59.829 55.000 0.00 0.00 0.00 6.13
831 841 0.453950 GCGTCTAGCGTCTTCGTTCA 60.454 55.000 8.08 0.00 43.66 3.18
942 952 1.352622 AAAGGAGTGGCCAGGACACA 61.353 55.000 28.32 1.06 45.35 3.72
1009 1019 2.713770 CAGTGCTCATGCCGATGC 59.286 61.111 0.00 0.00 38.71 3.91
1026 1036 1.078356 GCTCTTTCCCTTCCCCGTC 60.078 63.158 0.00 0.00 0.00 4.79
1159 1187 0.443869 GTCTTGCGGTGCACTGTATG 59.556 55.000 26.00 22.44 38.71 2.39
1208 1240 0.605589 CCGTCTGAGGAGCTGAAACT 59.394 55.000 0.00 0.00 0.00 2.66
1217 1249 2.062519 GGAGCTGAAACTCTTGACGAC 58.937 52.381 0.00 0.00 36.87 4.34
1254 1286 1.445095 CCGCAGAGGATGGAAGGAG 59.555 63.158 0.00 0.00 45.00 3.69
1299 1331 1.672356 ATCAAGGTCCGTGCAGTGC 60.672 57.895 8.58 8.58 0.00 4.40
1301 1333 2.186160 CAAGGTCCGTGCAGTGCAA 61.186 57.895 21.67 0.51 41.47 4.08
1333 1365 0.370273 CACGCTTCGGCAATCAGTAC 59.630 55.000 0.00 0.00 41.88 2.73
1492 1605 1.980844 GCTGTGCGTGAATCAAACATG 59.019 47.619 0.00 0.00 0.00 3.21
1668 1802 2.036862 CGGCTTATTCCTGGTAGGTACC 59.963 54.545 2.73 2.73 46.62 3.34
1737 2014 1.742831 TGATGCTCGGTACCAAATTGC 59.257 47.619 13.54 8.49 0.00 3.56
1838 2116 8.442374 TGGTATATAATTGTTACTTTCCCTCCC 58.558 37.037 0.00 0.00 0.00 4.30
1839 2117 8.666821 GGTATATAATTGTTACTTTCCCTCCCT 58.333 37.037 0.00 0.00 0.00 4.20
1845 2124 4.874199 TGTTACTTTCCCTCCCTTTTTGT 58.126 39.130 0.00 0.00 0.00 2.83
1854 2133 3.640967 CCCTCCCTTTTTGTTGATGTGAA 59.359 43.478 0.00 0.00 0.00 3.18
1856 2135 5.049828 CCTCCCTTTTTGTTGATGTGAAAC 58.950 41.667 0.00 0.00 37.35 2.78
1902 2181 6.770286 TCCTCTCAAATATTGGCTAATCCT 57.230 37.500 0.00 0.00 35.26 3.24
1907 2186 7.517320 TCTCAAATATTGGCTAATCCTGCTAA 58.483 34.615 0.00 0.00 35.51 3.09
1913 2192 5.581126 TTGGCTAATCCTGCTAATTGTTG 57.419 39.130 0.00 0.00 35.26 3.33
1923 2202 6.215121 TCCTGCTAATTGTTGTGTCATTTTG 58.785 36.000 0.00 0.00 0.00 2.44
2039 2378 0.317269 CTGCCCGAAATGCTAATGCG 60.317 55.000 0.00 0.00 43.34 4.73
2041 2380 1.724582 GCCCGAAATGCTAATGCGGT 61.725 55.000 0.00 0.00 43.34 5.68
2049 2388 4.981806 AATGCTAATGCGGTTACATGTT 57.018 36.364 2.30 0.00 43.34 2.71
2052 2391 5.127693 TGCTAATGCGGTTACATGTTTTT 57.872 34.783 2.30 0.00 43.34 1.94
2088 2478 4.091800 GCAATGTGTTACATGTGAAATGCC 59.908 41.667 9.11 0.00 37.97 4.40
2089 2479 3.932545 TGTGTTACATGTGAAATGCCC 57.067 42.857 9.11 0.00 0.00 5.36
2106 2496 0.622665 CCCCCTAGCATCCATGGATC 59.377 60.000 24.93 18.09 31.62 3.36
2203 2594 4.627058 TGCGTTTCAGAGAAGATTACACA 58.373 39.130 0.00 0.00 0.00 3.72
2314 2705 2.398554 CGACAATGGCTCCCAACCG 61.399 63.158 0.00 0.00 36.95 4.44
2377 2768 1.585006 GAACTCTTCGACCGAGCCA 59.415 57.895 10.07 0.00 31.71 4.75
2386 2777 0.729478 CGACCGAGCCATACATAGCG 60.729 60.000 0.00 0.00 0.00 4.26
2491 2882 3.260740 CTCTCTTGTTGTCTCTGATGCC 58.739 50.000 0.00 0.00 0.00 4.40
2492 2883 2.634453 TCTCTTGTTGTCTCTGATGCCA 59.366 45.455 0.00 0.00 0.00 4.92
2493 2884 3.262660 TCTCTTGTTGTCTCTGATGCCAT 59.737 43.478 0.00 0.00 0.00 4.40
2494 2885 3.340928 TCTTGTTGTCTCTGATGCCATG 58.659 45.455 0.00 0.00 0.00 3.66
2496 2887 0.737219 GTTGTCTCTGATGCCATGCC 59.263 55.000 0.00 0.00 0.00 4.40
2498 2889 0.393402 TGTCTCTGATGCCATGCCAC 60.393 55.000 0.00 0.00 0.00 5.01
2725 3149 4.232310 GGCACTGCCTCCTTCATC 57.768 61.111 13.28 0.00 46.69 2.92
2911 3341 1.810030 GATCGACACCAGTTCCGGC 60.810 63.158 0.00 0.00 0.00 6.13
2916 3346 4.722700 CACCAGTTCCGGCCAGGG 62.723 72.222 2.24 0.00 41.52 4.45
2989 3429 9.048446 TGAACAACACTAGACTTTGGTTATTAC 57.952 33.333 0.00 0.00 0.00 1.89
2990 3430 9.269453 GAACAACACTAGACTTTGGTTATTACT 57.731 33.333 0.00 0.00 0.00 2.24
2991 3431 9.623000 AACAACACTAGACTTTGGTTATTACTT 57.377 29.630 0.00 0.00 0.00 2.24
3053 3497 1.876156 CAGTTTGGTCTGACTTGCCTC 59.124 52.381 7.85 0.00 37.61 4.70
3158 3606 1.443194 GTTTCTGCCTGCGCATGTG 60.443 57.895 12.24 3.60 46.11 3.21
3200 3649 1.520494 CGCCCATGATGATCTCCTTG 58.480 55.000 0.00 0.00 0.00 3.61
3321 3770 5.359756 TCCACGAAAATGGTATCATCTGAG 58.640 41.667 0.00 0.00 40.95 3.35
3329 3778 4.639135 TGGTATCATCTGAGTTCTCACG 57.361 45.455 0.00 0.00 0.00 4.35
3337 3786 2.493675 TCTGAGTTCTCACGGATTCAGG 59.506 50.000 0.00 0.00 37.00 3.86
3338 3787 2.232452 CTGAGTTCTCACGGATTCAGGT 59.768 50.000 0.00 0.00 34.84 4.00
3339 3788 3.427573 TGAGTTCTCACGGATTCAGGTA 58.572 45.455 0.00 0.00 0.00 3.08
3340 3789 3.192844 TGAGTTCTCACGGATTCAGGTAC 59.807 47.826 0.00 0.00 0.00 3.34
3341 3790 2.163815 AGTTCTCACGGATTCAGGTACG 59.836 50.000 0.00 0.00 0.00 3.67
3342 3791 0.454600 TCTCACGGATTCAGGTACGC 59.545 55.000 0.00 0.00 0.00 4.42
3343 3792 0.172578 CTCACGGATTCAGGTACGCA 59.827 55.000 0.00 0.00 0.00 5.24
3344 3793 0.172578 TCACGGATTCAGGTACGCAG 59.827 55.000 0.00 0.00 0.00 5.18
3347 3796 1.523938 GGATTCAGGTACGCAGGCC 60.524 63.158 0.00 0.00 0.00 5.19
3348 3797 1.883084 GATTCAGGTACGCAGGCCG 60.883 63.158 0.00 0.00 44.21 6.13
3350 3799 2.573609 ATTCAGGTACGCAGGCCGAC 62.574 60.000 0.00 0.00 41.02 4.79
3394 3934 2.294512 GCTGTTCTTTCTTGGTTCAGGG 59.705 50.000 0.00 0.00 0.00 4.45
3439 3982 2.042435 AAGGCCGAGGAGGAGGAG 60.042 66.667 0.00 0.00 45.00 3.69
3456 3999 0.674269 GAGGACGACGAGGACAGAGT 60.674 60.000 0.00 0.00 0.00 3.24
3481 4024 4.521146 AGTTCCTGCAAGATTACATGGAG 58.479 43.478 0.00 0.00 34.07 3.86
3537 4080 3.147629 TCTCTTCTCCGTCGTCTTCTTT 58.852 45.455 0.00 0.00 0.00 2.52
3538 4081 3.188873 TCTCTTCTCCGTCGTCTTCTTTC 59.811 47.826 0.00 0.00 0.00 2.62
3539 4082 3.147629 TCTTCTCCGTCGTCTTCTTTCT 58.852 45.455 0.00 0.00 0.00 2.52
3554 4097 0.611062 TTTCTCTCGCCTTCCTCCGA 60.611 55.000 0.00 0.00 0.00 4.55
3557 4100 0.031449 CTCTCGCCTTCCTCCGATTC 59.969 60.000 0.00 0.00 32.52 2.52
3718 4344 3.885521 CGGCGAGGACGAGGTACC 61.886 72.222 2.73 2.73 42.66 3.34
3839 4584 2.822561 GACTCTCACATGTGTCTCTCCA 59.177 50.000 24.63 3.38 0.00 3.86
3981 5076 2.270434 AGGGGCTGACTATCTTCCAA 57.730 50.000 0.00 0.00 0.00 3.53
4059 5412 2.557056 TCGTCGTCATTGTCTTTCTCCT 59.443 45.455 0.00 0.00 0.00 3.69
4065 5418 1.075601 ATTGTCTTTCTCCTGCCCCA 58.924 50.000 0.00 0.00 0.00 4.96
4070 5423 0.329261 CTTTCTCCTGCCCCATGTCA 59.671 55.000 0.00 0.00 0.00 3.58
4088 5441 0.035056 CATTGTCTTTCTCCCGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
4089 5442 0.035056 ATTGTCTTTCTCCCGCCCTG 60.035 55.000 0.00 0.00 0.00 4.45
4101 5454 3.311110 GCCCTGTCGACCAGTCCA 61.311 66.667 14.12 0.00 39.74 4.02
4134 5487 3.798202 CACTGGCCTAACTATTGTCTCC 58.202 50.000 3.32 0.00 0.00 3.71
4192 5545 4.143333 TGTCTAAGCCGCCGCCTC 62.143 66.667 0.00 0.00 34.57 4.70
4204 5557 3.222855 CGCCTCCTCCGAGATGCT 61.223 66.667 0.00 0.00 38.52 3.79
4223 5576 3.591835 CCGCCCACACAACACCAC 61.592 66.667 0.00 0.00 0.00 4.16
4224 5577 2.826287 CGCCCACACAACACCACA 60.826 61.111 0.00 0.00 0.00 4.17
4264 5617 6.147821 CCTCCGACTATTAATAGCAAATGTGG 59.852 42.308 20.24 12.07 33.68 4.17
4309 5663 3.452990 ACCCGAAAACCAACCAAAAGAAT 59.547 39.130 0.00 0.00 0.00 2.40
4373 5727 3.186613 CACTAACTTGGTCGAAAGGCTTC 59.813 47.826 0.00 0.00 34.89 3.86
4376 5730 0.519077 CTTGGTCGAAAGGCTTCTGC 59.481 55.000 0.00 0.00 34.89 4.26
4378 5732 0.973632 TGGTCGAAAGGCTTCTGCTA 59.026 50.000 0.00 0.00 39.59 3.49
4407 5762 5.760743 TCATGTAACGAACATCAAACTCCAA 59.239 36.000 5.39 0.00 46.15 3.53
4435 5790 4.013050 GGGAGGTCTTTTGAAGATTCTGG 58.987 47.826 0.00 0.00 40.18 3.86
4447 5802 0.169009 GATTCTGGCGAAGGTTGTGC 59.831 55.000 0.00 0.00 31.60 4.57
4457 5812 2.271800 GAAGGTTGTGCTGGTCGATAG 58.728 52.381 0.00 0.00 0.00 2.08
4500 5855 1.662629 CTCACACAATCGCTCATGGTC 59.337 52.381 0.00 0.00 0.00 4.02
4510 5865 0.390860 GCTCATGGTCCGATGCTAGT 59.609 55.000 0.00 0.00 0.00 2.57
4513 5868 1.136891 TCATGGTCCGATGCTAGTGTG 59.863 52.381 0.00 0.00 0.00 3.82
4514 5869 0.179073 ATGGTCCGATGCTAGTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
4564 5919 1.982958 GACCAAGGTAGGGAGGACAAA 59.017 52.381 0.00 0.00 0.00 2.83
4566 5921 2.266279 CCAAGGTAGGGAGGACAAAGA 58.734 52.381 0.00 0.00 0.00 2.52
4567 5922 2.846827 CCAAGGTAGGGAGGACAAAGAT 59.153 50.000 0.00 0.00 0.00 2.40
4569 5924 2.482494 AGGTAGGGAGGACAAAGATGG 58.518 52.381 0.00 0.00 0.00 3.51
4599 5956 2.568062 GCTTAGATAGGGACTTAGGGCC 59.432 54.545 0.00 0.00 41.75 5.80
4605 5962 1.221021 GGGACTTAGGGCCGAACTG 59.779 63.158 0.00 0.00 0.00 3.16
4676 6033 1.882989 GAGCCTAGCCTAGCCCATCG 61.883 65.000 0.00 0.00 0.00 3.84
4677 6034 2.659610 CCTAGCCTAGCCCATCGC 59.340 66.667 0.00 0.00 37.98 4.58
4678 6035 2.659610 CTAGCCTAGCCCATCGCC 59.340 66.667 0.00 0.00 38.78 5.54
4683 6040 2.280660 CTAGCCCATCGCCTGCAG 60.281 66.667 6.78 6.78 38.78 4.41
4757 6114 5.993441 GGTGGCAACTGAGTTTTACTACTAA 59.007 40.000 0.00 0.00 37.61 2.24
4758 6115 6.484308 GGTGGCAACTGAGTTTTACTACTAAA 59.516 38.462 0.00 0.00 37.61 1.85
4759 6116 7.350467 GTGGCAACTGAGTTTTACTACTAAAC 58.650 38.462 0.00 0.00 35.05 2.01
4766 6123 7.646922 ACTGAGTTTTACTACTAAACACTGTCG 59.353 37.037 0.00 0.00 35.24 4.35
4767 6124 6.919662 TGAGTTTTACTACTAAACACTGTCGG 59.080 38.462 0.00 0.00 37.83 4.79
4768 6125 7.042797 AGTTTTACTACTAAACACTGTCGGA 57.957 36.000 0.00 0.00 37.83 4.55
4769 6126 7.491682 AGTTTTACTACTAAACACTGTCGGAA 58.508 34.615 0.00 0.00 37.83 4.30
4770 6127 7.981225 AGTTTTACTACTAAACACTGTCGGAAA 59.019 33.333 0.00 0.00 37.83 3.13
4771 6128 8.603181 GTTTTACTACTAAACACTGTCGGAAAA 58.397 33.333 0.00 0.00 35.94 2.29
4772 6129 7.935338 TTACTACTAAACACTGTCGGAAAAG 57.065 36.000 0.00 0.00 0.00 2.27
4773 6130 5.910614 ACTACTAAACACTGTCGGAAAAGT 58.089 37.500 0.00 0.00 0.00 2.66
4775 6132 3.875134 ACTAAACACTGTCGGAAAAGTGG 59.125 43.478 20.16 9.38 46.55 4.00
4776 6133 1.675552 AACACTGTCGGAAAAGTGGG 58.324 50.000 20.16 3.59 46.55 4.61
4777 6134 0.179029 ACACTGTCGGAAAAGTGGGG 60.179 55.000 20.16 3.05 46.55 4.96
4778 6135 0.179029 CACTGTCGGAAAAGTGGGGT 60.179 55.000 12.17 0.00 40.12 4.95
4779 6136 0.179029 ACTGTCGGAAAAGTGGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
4780 6137 0.179029 CTGTCGGAAAAGTGGGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
4781 6138 0.464735 TGTCGGAAAAGTGGGGTGTG 60.465 55.000 0.00 0.00 0.00 3.82
4782 6139 1.149627 TCGGAAAAGTGGGGTGTGG 59.850 57.895 0.00 0.00 0.00 4.17
4783 6140 2.561037 CGGAAAAGTGGGGTGTGGC 61.561 63.158 0.00 0.00 0.00 5.01
4784 6141 1.456705 GGAAAAGTGGGGTGTGGCA 60.457 57.895 0.00 0.00 0.00 4.92
4785 6142 1.045911 GGAAAAGTGGGGTGTGGCAA 61.046 55.000 0.00 0.00 0.00 4.52
4787 6144 0.829990 AAAAGTGGGGTGTGGCAAAG 59.170 50.000 0.00 0.00 0.00 2.77
4788 6145 1.048160 AAAGTGGGGTGTGGCAAAGG 61.048 55.000 0.00 0.00 0.00 3.11
4789 6146 2.917227 GTGGGGTGTGGCAAAGGG 60.917 66.667 0.00 0.00 0.00 3.95
4790 6147 3.106609 TGGGGTGTGGCAAAGGGA 61.107 61.111 0.00 0.00 0.00 4.20
4792 6149 1.984026 GGGGTGTGGCAAAGGGATG 60.984 63.158 0.00 0.00 0.00 3.51
4794 6151 1.535204 GGGTGTGGCAAAGGGATGTG 61.535 60.000 0.00 0.00 0.00 3.21
4795 6152 1.290009 GTGTGGCAAAGGGATGTGC 59.710 57.895 0.00 0.00 40.14 4.57
4800 6157 1.593265 GCAAAGGGATGTGCCTTGG 59.407 57.895 6.57 4.96 34.58 3.61
4801 6158 1.593265 CAAAGGGATGTGCCTTGGC 59.407 57.895 6.57 4.43 36.66 4.52
4802 6159 1.978617 AAAGGGATGTGCCTTGGCG 60.979 57.895 6.57 0.00 36.66 5.69
4803 6160 2.424842 AAAGGGATGTGCCTTGGCGA 62.425 55.000 6.57 0.00 36.66 5.54
4806 6163 2.359850 GATGTGCCTTGGCGACCA 60.360 61.111 7.18 4.27 0.00 4.02
4807 6164 1.971167 GATGTGCCTTGGCGACCAA 60.971 57.895 7.18 10.28 41.69 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 274 2.338620 CACTCCACGCGAACCTGA 59.661 61.111 15.93 0.00 0.00 3.86
474 478 6.540438 AAATGGCATTTGAAGATCACATCT 57.460 33.333 23.80 0.00 42.61 2.90
629 635 5.105513 CCAAACTAACATAAACCATCCACCC 60.106 44.000 0.00 0.00 0.00 4.61
638 644 6.077838 CGCAGAAGACCAAACTAACATAAAC 58.922 40.000 0.00 0.00 0.00 2.01
641 647 4.890088 ACGCAGAAGACCAAACTAACATA 58.110 39.130 0.00 0.00 0.00 2.29
649 655 1.879380 CATCCAACGCAGAAGACCAAA 59.121 47.619 0.00 0.00 0.00 3.28
676 682 1.876497 GCGGGCAACATCACACCATT 61.876 55.000 0.00 0.00 39.74 3.16
693 699 2.655952 AAACAAAGGTTCCACGCGCG 62.656 55.000 30.96 30.96 35.82 6.86
694 700 0.526739 AAAACAAAGGTTCCACGCGC 60.527 50.000 5.73 0.00 35.82 6.86
842 852 2.124236 ACCCTCTAGTCGGCCTCG 60.124 66.667 0.00 0.00 37.82 4.63
843 853 1.829096 GGACCCTCTAGTCGGCCTC 60.829 68.421 0.00 0.00 37.66 4.70
844 854 2.279408 GGACCCTCTAGTCGGCCT 59.721 66.667 0.00 0.00 37.66 5.19
851 861 3.492829 GCATCTTTAACCGGACCCTCTAG 60.493 52.174 9.46 0.00 0.00 2.43
942 952 0.820871 GAGTGGGCGAGAGTGATTCT 59.179 55.000 0.00 0.00 39.43 2.40
993 1003 1.523258 GAGCATCGGCATGAGCACT 60.523 57.895 0.00 0.00 44.61 4.40
995 1005 0.393402 AAAGAGCATCGGCATGAGCA 60.393 50.000 0.00 0.00 44.61 4.26
996 1006 0.307146 GAAAGAGCATCGGCATGAGC 59.693 55.000 0.00 0.00 44.61 4.26
999 1009 0.465097 AGGGAAAGAGCATCGGCATG 60.465 55.000 0.00 0.00 44.61 4.06
1009 1019 1.218316 CGACGGGGAAGGGAAAGAG 59.782 63.158 0.00 0.00 0.00 2.85
1208 1240 0.820482 TCCACCTGACGTCGTCAAGA 60.820 55.000 26.52 18.17 42.26 3.02
1299 1331 0.798776 GCGTGAGTCCATGGTCTTTG 59.201 55.000 12.99 7.22 0.00 2.77
1301 1333 0.687354 AAGCGTGAGTCCATGGTCTT 59.313 50.000 12.99 0.00 38.92 3.01
1333 1365 2.755103 GACAGTGAATTAAGGGGCCTTG 59.245 50.000 0.84 0.00 37.47 3.61
1376 1408 5.523916 ACCTGTCATCGCAAAGACATAATAC 59.476 40.000 3.03 0.00 43.18 1.89
1381 1413 2.289631 TGACCTGTCATCGCAAAGACAT 60.290 45.455 0.00 0.00 43.18 3.06
1383 1415 1.461127 GTGACCTGTCATCGCAAAGAC 59.539 52.381 2.91 0.00 42.18 3.01
1384 1416 1.344438 AGTGACCTGTCATCGCAAAGA 59.656 47.619 2.91 0.00 42.18 2.52
1385 1417 1.728971 GAGTGACCTGTCATCGCAAAG 59.271 52.381 2.91 0.00 42.18 2.77
1492 1605 6.456181 CGTTCAGAATTTCAGAGATAGCAACC 60.456 42.308 0.00 0.00 0.00 3.77
1737 2014 6.210078 GTTTATCTGTCCTCTTCCATCTACG 58.790 44.000 0.00 0.00 0.00 3.51
1819 2096 7.565768 ACAAAAAGGGAGGGAAAGTAACAATTA 59.434 33.333 0.00 0.00 0.00 1.40
1832 2110 3.230134 TCACATCAACAAAAAGGGAGGG 58.770 45.455 0.00 0.00 0.00 4.30
1834 2112 5.750067 CAGTTTCACATCAACAAAAAGGGAG 59.250 40.000 0.00 0.00 0.00 4.30
1835 2113 5.420421 TCAGTTTCACATCAACAAAAAGGGA 59.580 36.000 0.00 0.00 0.00 4.20
1836 2114 5.659463 TCAGTTTCACATCAACAAAAAGGG 58.341 37.500 0.00 0.00 0.00 3.95
1838 2116 9.090692 AGAATTCAGTTTCACATCAACAAAAAG 57.909 29.630 8.44 0.00 0.00 2.27
1881 2160 6.002704 AGCAGGATTAGCCAATATTTGAGAG 58.997 40.000 0.00 0.00 40.02 3.20
1902 2181 5.911752 ACCAAAATGACACAACAATTAGCA 58.088 33.333 0.00 0.00 0.00 3.49
1907 2186 6.723298 TTCCTACCAAAATGACACAACAAT 57.277 33.333 0.00 0.00 0.00 2.71
1913 2192 5.402398 GCTGAATTCCTACCAAAATGACAC 58.598 41.667 2.27 0.00 0.00 3.67
1923 2202 3.118261 TGACATGAGGCTGAATTCCTACC 60.118 47.826 0.00 1.68 33.24 3.18
1984 2323 4.397481 GGCTAAGTAGTCCACCGTATTT 57.603 45.455 0.00 0.00 0.00 1.40
2054 2393 7.710044 ACATGTAACACATTGCTCATTCAAAAA 59.290 29.630 0.00 0.00 36.53 1.94
2055 2394 7.169476 CACATGTAACACATTGCTCATTCAAAA 59.831 33.333 0.00 0.00 36.53 2.44
2056 2395 6.641723 CACATGTAACACATTGCTCATTCAAA 59.358 34.615 0.00 0.00 36.53 2.69
2057 2396 6.016443 TCACATGTAACACATTGCTCATTCAA 60.016 34.615 0.00 0.00 36.53 2.69
2058 2397 5.472820 TCACATGTAACACATTGCTCATTCA 59.527 36.000 0.00 0.00 36.53 2.57
2059 2398 5.941733 TCACATGTAACACATTGCTCATTC 58.058 37.500 0.00 0.00 36.53 2.67
2060 2399 5.963176 TCACATGTAACACATTGCTCATT 57.037 34.783 0.00 0.00 36.53 2.57
2061 2400 5.963176 TTCACATGTAACACATTGCTCAT 57.037 34.783 0.00 0.00 36.53 2.90
2062 2401 5.764487 TTTCACATGTAACACATTGCTCA 57.236 34.783 0.00 0.00 36.53 4.26
2063 2402 5.061311 GCATTTCACATGTAACACATTGCTC 59.939 40.000 0.00 0.00 36.53 4.26
2064 2403 4.925054 GCATTTCACATGTAACACATTGCT 59.075 37.500 0.00 0.00 36.53 3.91
2065 2404 4.091800 GGCATTTCACATGTAACACATTGC 59.908 41.667 0.00 2.07 36.53 3.56
2088 2478 1.365293 TGATCCATGGATGCTAGGGG 58.635 55.000 32.05 0.00 34.60 4.79
2089 2479 3.009805 TGATTGATCCATGGATGCTAGGG 59.990 47.826 32.05 0.00 34.60 3.53
2100 2490 6.370453 TCTTTCATGGTCATGATTGATCCAT 58.630 36.000 13.58 8.59 46.12 3.41
2106 2496 8.766000 TGATTTTTCTTTCATGGTCATGATTG 57.234 30.769 13.58 9.86 46.12 2.67
2142 2533 5.065731 AGCAGCTAAAGAATTGATTCCTTCG 59.934 40.000 0.00 0.00 37.51 3.79
2236 2627 0.668706 CCCAGTGCTTCACTCTGTCG 60.669 60.000 0.00 0.00 43.43 4.35
2353 2744 0.108756 CGGTCGAAGAGTTCCCTTCC 60.109 60.000 0.00 0.00 39.39 3.46
2362 2753 0.738975 TGTATGGCTCGGTCGAAGAG 59.261 55.000 13.14 13.14 36.95 2.85
2377 2768 2.232452 GAGATGGTGAGCCGCTATGTAT 59.768 50.000 0.00 0.00 37.67 2.29
2386 2777 1.145819 GAGCAGGAGATGGTGAGCC 59.854 63.158 0.00 0.00 40.53 4.70
2496 2887 1.105457 CCATAACCTGCCATGTGGTG 58.895 55.000 0.35 0.00 36.57 4.17
2498 2889 1.851304 AACCATAACCTGCCATGTGG 58.149 50.000 0.00 0.00 34.32 4.17
2596 3008 0.485543 TCCTGGGGTGTGTCAGTAGA 59.514 55.000 0.00 0.00 0.00 2.59
2675 3087 9.750783 ACTGTAAACTCTTCTTAGGAGTACATA 57.249 33.333 0.00 0.00 42.39 2.29
2709 3133 2.627515 TATGATGAAGGAGGCAGTGC 57.372 50.000 6.55 6.55 0.00 4.40
2712 3136 4.040095 TGTCTCATATGATGAAGGAGGCAG 59.960 45.833 5.72 0.00 39.11 4.85
2713 3137 3.969312 TGTCTCATATGATGAAGGAGGCA 59.031 43.478 5.72 0.00 39.11 4.75
2715 3139 4.592351 ACCTGTCTCATATGATGAAGGAGG 59.408 45.833 24.12 19.36 37.10 4.30
2717 3141 5.662657 TGAACCTGTCTCATATGATGAAGGA 59.337 40.000 24.12 10.05 37.10 3.36
2718 3142 5.922053 TGAACCTGTCTCATATGATGAAGG 58.078 41.667 19.05 19.05 39.57 3.46
2719 3143 6.073167 GCATGAACCTGTCTCATATGATGAAG 60.073 42.308 5.72 4.03 39.11 3.02
2723 3147 5.300411 TGCATGAACCTGTCTCATATGAT 57.700 39.130 5.72 0.00 32.20 2.45
2724 3148 4.758773 TGCATGAACCTGTCTCATATGA 57.241 40.909 5.07 5.07 32.20 2.15
2725 3149 4.454847 GGATGCATGAACCTGTCTCATATG 59.545 45.833 2.46 0.00 32.20 1.78
2830 3260 0.652592 CGAATGATCCACGCACCTTC 59.347 55.000 0.00 0.00 0.00 3.46
2911 3341 1.689582 GTAGTCCCTGGGTCCCTGG 60.690 68.421 24.15 24.15 41.51 4.45
2916 3346 1.101331 CACGTAGTAGTCCCTGGGTC 58.899 60.000 13.56 7.33 41.61 4.46
2995 3435 7.766278 GCAGAAACCTACTATTCTTCTGAATGA 59.234 37.037 12.93 0.00 43.65 2.57
2996 3436 7.550551 TGCAGAAACCTACTATTCTTCTGAATG 59.449 37.037 12.93 0.00 43.65 2.67
2997 3437 7.624549 TGCAGAAACCTACTATTCTTCTGAAT 58.375 34.615 12.93 0.00 43.65 2.57
2998 3438 7.004555 TGCAGAAACCTACTATTCTTCTGAA 57.995 36.000 12.93 0.99 43.65 3.02
2999 3439 6.351371 CCTGCAGAAACCTACTATTCTTCTGA 60.351 42.308 17.39 0.23 43.65 3.27
3000 3440 5.814705 CCTGCAGAAACCTACTATTCTTCTG 59.185 44.000 17.39 5.89 43.74 3.02
3001 3441 5.627968 GCCTGCAGAAACCTACTATTCTTCT 60.628 44.000 17.39 0.00 33.73 2.85
3002 3442 4.572795 GCCTGCAGAAACCTACTATTCTTC 59.427 45.833 17.39 0.00 33.73 2.87
3003 3443 4.226168 AGCCTGCAGAAACCTACTATTCTT 59.774 41.667 17.39 0.00 33.73 2.52
3011 3451 4.722193 GCAGCCTGCAGAAACCTA 57.278 55.556 17.39 0.00 44.26 3.08
3053 3497 3.192001 CAGGAGAACAACATCAACATGGG 59.808 47.826 0.00 0.00 33.82 4.00
3158 3606 4.382901 GCAGGATGAGGATGAGATGATACC 60.383 50.000 0.00 0.00 39.69 2.73
3321 3770 2.527100 CGTACCTGAATCCGTGAGAAC 58.473 52.381 0.00 0.00 0.00 3.01
3329 3778 1.523938 GGCCTGCGTACCTGAATCC 60.524 63.158 0.00 0.00 0.00 3.01
3373 3822 2.294512 CCCTGAACCAAGAAAGAACAGC 59.705 50.000 0.00 0.00 0.00 4.40
3439 3982 1.502640 CACTCTGTCCTCGTCGTCC 59.497 63.158 0.00 0.00 0.00 4.79
3456 3999 4.264253 CATGTAATCTTGCAGGAACTCCA 58.736 43.478 1.33 0.00 34.60 3.86
3481 4024 1.407979 CGTATGGACAGGTACAGGGTC 59.592 57.143 0.00 0.00 0.00 4.46
3537 4080 0.395862 AATCGGAGGAAGGCGAGAGA 60.396 55.000 0.00 0.00 0.00 3.10
3538 4081 0.031449 GAATCGGAGGAAGGCGAGAG 59.969 60.000 0.00 0.00 0.00 3.20
3539 4082 0.395862 AGAATCGGAGGAAGGCGAGA 60.396 55.000 0.00 0.00 0.00 4.04
3566 4109 3.304928 GCAACACAGTTTTCATCAGAGGG 60.305 47.826 0.00 0.00 0.00 4.30
3567 4110 3.316029 TGCAACACAGTTTTCATCAGAGG 59.684 43.478 0.00 0.00 0.00 3.69
3568 4111 4.534168 CTGCAACACAGTTTTCATCAGAG 58.466 43.478 0.00 0.00 41.86 3.35
3839 4584 2.681344 GGAAAACAAACACGTGGAGACT 59.319 45.455 21.57 0.00 0.00 3.24
3913 4662 8.617290 ACAAAACGTATTCTTATTCTCCTTGT 57.383 30.769 0.00 0.00 0.00 3.16
3958 4720 5.087923 TGGAAGATAGTCAGCCCCTTATA 57.912 43.478 0.00 0.00 0.00 0.98
3997 5100 1.008538 GCACGGCCAACTGAAACTG 60.009 57.895 2.24 0.00 0.00 3.16
4059 5412 2.170166 GAAAGACAATGACATGGGGCA 58.830 47.619 0.00 0.00 0.00 5.36
4065 5418 2.359900 GCGGGAGAAAGACAATGACAT 58.640 47.619 0.00 0.00 0.00 3.06
4070 5423 0.035056 CAGGGCGGGAGAAAGACAAT 60.035 55.000 0.00 0.00 0.00 2.71
4088 5441 3.299977 CCGGTGGACTGGTCGACA 61.300 66.667 18.91 2.63 39.62 4.35
4089 5442 4.065281 CCCGGTGGACTGGTCGAC 62.065 72.222 7.13 7.13 40.86 4.20
4188 5541 2.420890 CAGCATCTCGGAGGAGGC 59.579 66.667 4.96 6.75 42.40 4.70
4212 5565 2.969821 ATATGGGTGTGGTGTTGTGT 57.030 45.000 0.00 0.00 0.00 3.72
4223 5576 1.308998 GAGGTTGGCGAATATGGGTG 58.691 55.000 0.00 0.00 0.00 4.61
4224 5577 0.182775 GGAGGTTGGCGAATATGGGT 59.817 55.000 0.00 0.00 0.00 4.51
4264 5617 6.382608 GTTTGCAGAAGGAGGATTAACTTTC 58.617 40.000 0.00 0.00 0.00 2.62
4273 5626 1.125093 TCGGGTTTGCAGAAGGAGGA 61.125 55.000 0.00 0.00 0.00 3.71
4316 5670 6.099125 TGAAGTTGGCTAGTAGCATAACCATA 59.901 38.462 25.56 15.47 44.75 2.74
4323 5677 4.559862 AACTGAAGTTGGCTAGTAGCAT 57.440 40.909 23.24 3.72 44.75 3.79
4373 5727 4.329801 TGTTCGTTACATGAGCAATAGCAG 59.670 41.667 0.00 0.00 45.49 4.24
4407 5762 5.843019 TCTTCAAAAGACCTCCCATACTT 57.157 39.130 0.00 0.00 31.20 2.24
4414 5769 3.441922 GCCAGAATCTTCAAAAGACCTCC 59.558 47.826 0.00 0.00 41.01 4.30
4435 5790 2.946762 GACCAGCACAACCTTCGC 59.053 61.111 0.00 0.00 0.00 4.70
4447 5802 0.749649 AAGAGGCTGCTATCGACCAG 59.250 55.000 0.00 0.00 0.00 4.00
4500 5855 0.729116 CTTTGGCACACTAGCATCGG 59.271 55.000 0.00 0.00 39.29 4.18
4513 5868 1.591327 CACCAACAACGCCTTTGGC 60.591 57.895 8.94 0.00 45.44 4.52
4514 5869 1.067250 CCACCAACAACGCCTTTGG 59.933 57.895 7.74 7.74 46.72 3.28
4564 5919 0.835941 CTAAGCTCTGGTGGCCATCT 59.164 55.000 18.94 0.00 30.82 2.90
4566 5921 1.516110 ATCTAAGCTCTGGTGGCCAT 58.484 50.000 9.72 0.00 30.82 4.40
4567 5922 2.042464 CTATCTAAGCTCTGGTGGCCA 58.958 52.381 0.00 0.00 0.00 5.36
4569 5924 1.346068 CCCTATCTAAGCTCTGGTGGC 59.654 57.143 0.00 0.00 0.00 5.01
4571 5926 3.571590 AGTCCCTATCTAAGCTCTGGTG 58.428 50.000 0.00 0.00 0.00 4.17
4572 5927 3.983533 AGTCCCTATCTAAGCTCTGGT 57.016 47.619 0.00 0.00 0.00 4.00
4573 5928 4.770010 CCTAAGTCCCTATCTAAGCTCTGG 59.230 50.000 0.00 0.00 0.00 3.86
4599 5956 2.438434 GGGCCATGGTCCAGTTCG 60.438 66.667 31.13 0.00 40.19 3.95
4651 6008 3.854736 GGCTAGGCTAGGCTCCAAAGC 62.855 61.905 33.61 23.83 46.78 3.51
4676 6033 1.163554 CAAAGGAGAGAACTGCAGGC 58.836 55.000 19.93 9.79 36.93 4.85
4677 6034 1.612726 CCCAAAGGAGAGAACTGCAGG 60.613 57.143 19.93 0.00 36.93 4.85
4678 6035 1.818642 CCCAAAGGAGAGAACTGCAG 58.181 55.000 13.48 13.48 36.93 4.41
4683 6040 0.962855 GCCAGCCCAAAGGAGAGAAC 60.963 60.000 0.00 0.00 33.47 3.01
4757 6114 1.675552 CCCACTTTTCCGACAGTGTT 58.324 50.000 0.00 0.00 39.09 3.32
4758 6115 0.179029 CCCCACTTTTCCGACAGTGT 60.179 55.000 0.00 0.00 39.09 3.55
4759 6116 0.179029 ACCCCACTTTTCCGACAGTG 60.179 55.000 0.00 0.00 40.23 3.66
4766 6123 1.045911 TTGCCACACCCCACTTTTCC 61.046 55.000 0.00 0.00 0.00 3.13
4767 6124 0.827368 TTTGCCACACCCCACTTTTC 59.173 50.000 0.00 0.00 0.00 2.29
4768 6125 0.829990 CTTTGCCACACCCCACTTTT 59.170 50.000 0.00 0.00 0.00 2.27
4769 6126 1.048160 CCTTTGCCACACCCCACTTT 61.048 55.000 0.00 0.00 0.00 2.66
4770 6127 1.457455 CCTTTGCCACACCCCACTT 60.457 57.895 0.00 0.00 0.00 3.16
4771 6128 2.198426 CCTTTGCCACACCCCACT 59.802 61.111 0.00 0.00 0.00 4.00
4772 6129 2.730129 ATCCCTTTGCCACACCCCAC 62.730 60.000 0.00 0.00 0.00 4.61
4773 6130 2.477893 ATCCCTTTGCCACACCCCA 61.478 57.895 0.00 0.00 0.00 4.96
4774 6131 1.984026 CATCCCTTTGCCACACCCC 60.984 63.158 0.00 0.00 0.00 4.95
4775 6132 1.228862 ACATCCCTTTGCCACACCC 60.229 57.895 0.00 0.00 0.00 4.61
4776 6133 1.966762 CACATCCCTTTGCCACACC 59.033 57.895 0.00 0.00 0.00 4.16
4777 6134 1.290009 GCACATCCCTTTGCCACAC 59.710 57.895 0.00 0.00 32.21 3.82
4778 6135 3.776158 GCACATCCCTTTGCCACA 58.224 55.556 0.00 0.00 32.21 4.17
4782 6139 1.593265 CCAAGGCACATCCCTTTGC 59.407 57.895 0.00 0.00 42.48 3.68
4783 6140 1.593265 GCCAAGGCACATCCCTTTG 59.407 57.895 6.14 0.00 42.48 2.77
4784 6141 1.978617 CGCCAAGGCACATCCCTTT 60.979 57.895 12.19 0.00 42.48 3.11
4785 6142 2.361610 CGCCAAGGCACATCCCTT 60.362 61.111 12.19 0.00 45.94 3.95
4787 6144 3.134127 GTCGCCAAGGCACATCCC 61.134 66.667 12.19 0.00 42.06 3.85
4788 6145 3.134127 GGTCGCCAAGGCACATCC 61.134 66.667 12.19 3.78 42.06 3.51
4789 6146 1.971167 TTGGTCGCCAAGGCACATC 60.971 57.895 12.19 0.00 38.75 3.06
4790 6147 2.115052 TTGGTCGCCAAGGCACAT 59.885 55.556 12.19 0.00 38.75 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.