Multiple sequence alignment - TraesCS5D01G302500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G302500 chr5D 100.000 2828 0 0 1 2828 398754823 398757650 0.000000e+00 5223
1 TraesCS5D01G302500 chr5D 88.811 572 62 2 1003 1573 398616521 398617091 0.000000e+00 701
2 TraesCS5D01G302500 chr5D 81.003 758 118 24 1003 1744 398764798 398765545 1.890000e-161 579
3 TraesCS5D01G302500 chr5D 86.634 404 38 7 1797 2184 398635147 398635550 1.560000e-117 433
4 TraesCS5D01G302500 chr5D 84.711 242 26 4 1560 1797 398634869 398635103 6.090000e-57 231
5 TraesCS5D01G302500 chr5B 89.495 990 90 5 814 1797 478680961 478681942 0.000000e+00 1240
6 TraesCS5D01G302500 chr5B 90.462 650 56 4 1 649 532824648 532824004 0.000000e+00 852
7 TraesCS5D01G302500 chr5B 88.594 640 70 2 3 641 375453090 375453727 0.000000e+00 774
8 TraesCS5D01G302500 chr5B 86.449 642 81 5 3 643 107574528 107575164 0.000000e+00 699
9 TraesCS5D01G302500 chr5B 82.267 750 120 10 1003 1744 478674256 478675000 1.110000e-178 636
10 TraesCS5D01G302500 chr5B 82.727 660 73 22 1797 2420 478681986 478682640 1.480000e-152 549
11 TraesCS5D01G302500 chr5B 79.400 767 131 19 1003 1754 478737437 478738191 1.500000e-142 516
12 TraesCS5D01G302500 chr5B 81.463 410 50 15 1797 2182 478675097 478675504 2.120000e-81 313
13 TraesCS5D01G302500 chr5B 83.249 197 26 5 2227 2420 478675577 478675769 1.040000e-39 174
14 TraesCS5D01G302500 chr6D 92.403 645 46 2 1 644 70637978 70637336 0.000000e+00 917
15 TraesCS5D01G302500 chr6D 95.808 167 7 0 2415 2581 473238216 473238382 1.290000e-68 270
16 TraesCS5D01G302500 chr7D 88.020 601 66 4 19 618 107031878 107032473 0.000000e+00 706
17 TraesCS5D01G302500 chr7D 85.008 647 88 8 3 646 206691903 206691263 0.000000e+00 649
18 TraesCS5D01G302500 chr7D 96.988 166 5 0 2419 2584 125844851 125844686 2.150000e-71 279
19 TraesCS5D01G302500 chr7D 95.930 172 5 2 2414 2585 235502572 235502403 7.720000e-71 278
20 TraesCS5D01G302500 chr7D 93.407 182 11 1 2408 2589 519554 519374 4.640000e-68 268
21 TraesCS5D01G302500 chr7B 86.512 645 77 9 3 643 636751002 636751640 0.000000e+00 701
22 TraesCS5D01G302500 chr4A 87.748 604 67 6 6 607 614607047 614606449 0.000000e+00 699
23 TraesCS5D01G302500 chr2D 86.430 619 79 4 3 619 427984780 427985395 0.000000e+00 673
24 TraesCS5D01G302500 chr5A 83.485 660 69 17 1797 2420 503768009 503768664 1.890000e-161 579
25 TraesCS5D01G302500 chr5A 86.307 482 64 2 1317 1797 503767485 503767965 8.980000e-145 523
26 TraesCS5D01G302500 chr5A 79.369 761 125 23 1003 1744 503772016 503772763 9.040000e-140 507
27 TraesCS5D01G302500 chr5A 92.063 252 17 1 1003 1254 503767241 503767489 4.480000e-93 351
28 TraesCS5D01G302500 chr3D 95.977 174 6 1 2419 2592 486424787 486424959 5.960000e-72 281
29 TraesCS5D01G302500 chr1D 96.988 166 5 0 2419 2584 311986774 311986609 2.150000e-71 279
30 TraesCS5D01G302500 chr1D 95.349 172 8 0 2411 2582 126223334 126223505 9.980000e-70 274
31 TraesCS5D01G302500 chr2A 95.930 172 6 1 2419 2590 374517184 374517354 7.720000e-71 278
32 TraesCS5D01G302500 chr4B 92.473 186 12 2 2400 2583 82024030 82024215 6.010000e-67 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G302500 chr5D 398754823 398757650 2827 False 5223.000000 5223 100.000000 1 2828 1 chr5D.!!$F2 2827
1 TraesCS5D01G302500 chr5D 398616521 398617091 570 False 701.000000 701 88.811000 1003 1573 1 chr5D.!!$F1 570
2 TraesCS5D01G302500 chr5D 398764798 398765545 747 False 579.000000 579 81.003000 1003 1744 1 chr5D.!!$F3 741
3 TraesCS5D01G302500 chr5D 398634869 398635550 681 False 332.000000 433 85.672500 1560 2184 2 chr5D.!!$F4 624
4 TraesCS5D01G302500 chr5B 478680961 478682640 1679 False 894.500000 1240 86.111000 814 2420 2 chr5B.!!$F5 1606
5 TraesCS5D01G302500 chr5B 532824004 532824648 644 True 852.000000 852 90.462000 1 649 1 chr5B.!!$R1 648
6 TraesCS5D01G302500 chr5B 375453090 375453727 637 False 774.000000 774 88.594000 3 641 1 chr5B.!!$F2 638
7 TraesCS5D01G302500 chr5B 107574528 107575164 636 False 699.000000 699 86.449000 3 643 1 chr5B.!!$F1 640
8 TraesCS5D01G302500 chr5B 478737437 478738191 754 False 516.000000 516 79.400000 1003 1754 1 chr5B.!!$F3 751
9 TraesCS5D01G302500 chr5B 478674256 478675769 1513 False 374.333333 636 82.326333 1003 2420 3 chr5B.!!$F4 1417
10 TraesCS5D01G302500 chr6D 70637336 70637978 642 True 917.000000 917 92.403000 1 644 1 chr6D.!!$R1 643
11 TraesCS5D01G302500 chr7D 107031878 107032473 595 False 706.000000 706 88.020000 19 618 1 chr7D.!!$F1 599
12 TraesCS5D01G302500 chr7D 206691263 206691903 640 True 649.000000 649 85.008000 3 646 1 chr7D.!!$R3 643
13 TraesCS5D01G302500 chr7B 636751002 636751640 638 False 701.000000 701 86.512000 3 643 1 chr7B.!!$F1 640
14 TraesCS5D01G302500 chr4A 614606449 614607047 598 True 699.000000 699 87.748000 6 607 1 chr4A.!!$R1 601
15 TraesCS5D01G302500 chr2D 427984780 427985395 615 False 673.000000 673 86.430000 3 619 1 chr2D.!!$F1 616
16 TraesCS5D01G302500 chr5A 503767241 503772763 5522 False 490.000000 579 85.306000 1003 2420 4 chr5A.!!$F1 1417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
805 809 0.103026 TAGCTAGTGATGTGCTGCCG 59.897 55.0 0.00 0.0 37.62 5.69 F
1409 1420 0.178992 CCAGAGTTTGGCAACCCTGA 60.179 55.0 18.53 0.0 40.38 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1749 0.472734 AGTCCAGTGGCCTCTCAGTT 60.473 55.000 3.81 0.00 0.0 3.16 R
2786 2960 1.144936 GTCCTTCTCTCCATGGCGG 59.855 63.158 6.96 2.23 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 0.971959 GGACATGGGCCATTTGCAGA 60.972 55.000 18.46 0.00 43.89 4.26
321 323 6.044754 ACCCAGCTGATATCCTATTCAAATGA 59.955 38.462 17.39 0.00 0.00 2.57
322 324 6.944290 CCCAGCTGATATCCTATTCAAATGAA 59.056 38.462 17.39 0.00 38.56 2.57
377 379 3.188786 GCGTGATGAGGACCGCAC 61.189 66.667 0.00 0.02 45.12 5.34
378 380 2.261361 CGTGATGAGGACCGCACA 59.739 61.111 0.00 0.00 0.00 4.57
426 429 0.378257 GTGCATGGTGAAATCGCGAT 59.622 50.000 17.62 17.62 0.00 4.58
501 504 5.119588 CGCTTTTGTGTTCCTTTATCGTCTA 59.880 40.000 0.00 0.00 0.00 2.59
502 505 6.347079 CGCTTTTGTGTTCCTTTATCGTCTAA 60.347 38.462 0.00 0.00 0.00 2.10
619 623 7.163682 GCTTTATTAATTTAAAGTCGGACGCTG 59.836 37.037 10.84 0.00 40.02 5.18
657 661 3.644953 AAAAAGGAGGGTGGGCAAA 57.355 47.368 0.00 0.00 0.00 3.68
658 662 1.423584 AAAAAGGAGGGTGGGCAAAG 58.576 50.000 0.00 0.00 0.00 2.77
659 663 1.121407 AAAAGGAGGGTGGGCAAAGC 61.121 55.000 0.00 0.00 0.00 3.51
660 664 3.868200 AAGGAGGGTGGGCAAAGCG 62.868 63.158 0.00 0.00 0.00 4.68
661 665 4.660938 GGAGGGTGGGCAAAGCGT 62.661 66.667 0.00 0.00 0.00 5.07
662 666 3.056328 GAGGGTGGGCAAAGCGTC 61.056 66.667 0.00 0.00 0.00 5.19
663 667 4.660938 AGGGTGGGCAAAGCGTCC 62.661 66.667 0.00 0.00 0.00 4.79
664 668 4.966787 GGGTGGGCAAAGCGTCCA 62.967 66.667 0.00 0.00 0.00 4.02
665 669 3.365265 GGTGGGCAAAGCGTCCAG 61.365 66.667 0.00 0.00 0.00 3.86
666 670 2.594592 GTGGGCAAAGCGTCCAGT 60.595 61.111 0.00 0.00 0.00 4.00
667 671 2.193536 GTGGGCAAAGCGTCCAGTT 61.194 57.895 0.00 0.00 0.00 3.16
668 672 2.192861 TGGGCAAAGCGTCCAGTTG 61.193 57.895 0.00 0.00 0.00 3.16
669 673 1.896660 GGGCAAAGCGTCCAGTTGA 60.897 57.895 0.00 0.00 0.00 3.18
670 674 1.576421 GGCAAAGCGTCCAGTTGAG 59.424 57.895 0.00 0.00 0.00 3.02
671 675 1.166531 GGCAAAGCGTCCAGTTGAGT 61.167 55.000 0.00 0.00 0.00 3.41
672 676 0.663153 GCAAAGCGTCCAGTTGAGTT 59.337 50.000 0.00 0.00 0.00 3.01
673 677 1.871039 GCAAAGCGTCCAGTTGAGTTA 59.129 47.619 0.00 0.00 0.00 2.24
674 678 2.484264 GCAAAGCGTCCAGTTGAGTTAT 59.516 45.455 0.00 0.00 0.00 1.89
675 679 3.682858 GCAAAGCGTCCAGTTGAGTTATA 59.317 43.478 0.00 0.00 0.00 0.98
676 680 4.153475 GCAAAGCGTCCAGTTGAGTTATAA 59.847 41.667 0.00 0.00 0.00 0.98
677 681 5.334569 GCAAAGCGTCCAGTTGAGTTATAAA 60.335 40.000 0.00 0.00 0.00 1.40
678 682 6.622896 GCAAAGCGTCCAGTTGAGTTATAAAT 60.623 38.462 0.00 0.00 0.00 1.40
679 683 6.663944 AAGCGTCCAGTTGAGTTATAAATC 57.336 37.500 5.98 5.98 0.00 2.17
680 684 5.116882 AGCGTCCAGTTGAGTTATAAATCC 58.883 41.667 10.23 0.00 0.00 3.01
681 685 5.104900 AGCGTCCAGTTGAGTTATAAATCCT 60.105 40.000 10.23 0.00 0.00 3.24
682 686 5.585047 GCGTCCAGTTGAGTTATAAATCCTT 59.415 40.000 10.23 0.00 0.00 3.36
683 687 6.238130 GCGTCCAGTTGAGTTATAAATCCTTC 60.238 42.308 10.23 1.71 0.00 3.46
684 688 6.019801 CGTCCAGTTGAGTTATAAATCCTTCG 60.020 42.308 10.23 3.00 0.00 3.79
685 689 7.039882 GTCCAGTTGAGTTATAAATCCTTCGA 58.960 38.462 10.23 0.00 0.00 3.71
686 690 7.010275 GTCCAGTTGAGTTATAAATCCTTCGAC 59.990 40.741 10.23 6.13 0.00 4.20
687 691 6.258068 CCAGTTGAGTTATAAATCCTTCGACC 59.742 42.308 10.23 0.00 0.00 4.79
688 692 6.258068 CAGTTGAGTTATAAATCCTTCGACCC 59.742 42.308 10.23 0.00 0.00 4.46
689 693 5.943349 TGAGTTATAAATCCTTCGACCCA 57.057 39.130 10.23 0.00 0.00 4.51
690 694 5.667466 TGAGTTATAAATCCTTCGACCCAC 58.333 41.667 10.23 0.00 0.00 4.61
691 695 5.188163 TGAGTTATAAATCCTTCGACCCACA 59.812 40.000 10.23 0.00 0.00 4.17
692 696 6.057321 AGTTATAAATCCTTCGACCCACAA 57.943 37.500 0.00 0.00 0.00 3.33
693 697 6.478129 AGTTATAAATCCTTCGACCCACAAA 58.522 36.000 0.00 0.00 0.00 2.83
694 698 6.943718 AGTTATAAATCCTTCGACCCACAAAA 59.056 34.615 0.00 0.00 0.00 2.44
695 699 7.449086 AGTTATAAATCCTTCGACCCACAAAAA 59.551 33.333 0.00 0.00 0.00 1.94
725 729 8.585189 GGTATAAACCCTTCGAAACTACTATG 57.415 38.462 0.00 0.00 40.21 2.23
726 730 7.170489 GGTATAAACCCTTCGAAACTACTATGC 59.830 40.741 0.00 0.00 40.21 3.14
727 731 3.538634 ACCCTTCGAAACTACTATGCC 57.461 47.619 0.00 0.00 0.00 4.40
728 732 3.105283 ACCCTTCGAAACTACTATGCCT 58.895 45.455 0.00 0.00 0.00 4.75
729 733 3.118738 ACCCTTCGAAACTACTATGCCTG 60.119 47.826 0.00 0.00 0.00 4.85
730 734 3.118738 CCCTTCGAAACTACTATGCCTGT 60.119 47.826 0.00 0.00 0.00 4.00
731 735 4.504858 CCTTCGAAACTACTATGCCTGTT 58.495 43.478 0.00 0.00 0.00 3.16
732 736 4.567159 CCTTCGAAACTACTATGCCTGTTC 59.433 45.833 0.00 0.00 0.00 3.18
733 737 5.401531 TTCGAAACTACTATGCCTGTTCT 57.598 39.130 0.00 0.00 0.00 3.01
734 738 4.744570 TCGAAACTACTATGCCTGTTCTG 58.255 43.478 0.00 0.00 0.00 3.02
735 739 4.219944 TCGAAACTACTATGCCTGTTCTGT 59.780 41.667 0.00 0.00 0.00 3.41
736 740 4.563184 CGAAACTACTATGCCTGTTCTGTC 59.437 45.833 0.00 0.00 0.00 3.51
737 741 4.473477 AACTACTATGCCTGTTCTGTCC 57.527 45.455 0.00 0.00 0.00 4.02
738 742 2.427453 ACTACTATGCCTGTTCTGTCCG 59.573 50.000 0.00 0.00 0.00 4.79
739 743 1.557099 ACTATGCCTGTTCTGTCCGA 58.443 50.000 0.00 0.00 0.00 4.55
740 744 1.204941 ACTATGCCTGTTCTGTCCGAC 59.795 52.381 0.00 0.00 0.00 4.79
741 745 0.535335 TATGCCTGTTCTGTCCGACC 59.465 55.000 0.00 0.00 0.00 4.79
742 746 1.194781 ATGCCTGTTCTGTCCGACCT 61.195 55.000 0.00 0.00 0.00 3.85
743 747 1.371558 GCCTGTTCTGTCCGACCTT 59.628 57.895 0.00 0.00 0.00 3.50
744 748 0.606604 GCCTGTTCTGTCCGACCTTA 59.393 55.000 0.00 0.00 0.00 2.69
745 749 1.207329 GCCTGTTCTGTCCGACCTTAT 59.793 52.381 0.00 0.00 0.00 1.73
746 750 2.429610 GCCTGTTCTGTCCGACCTTATA 59.570 50.000 0.00 0.00 0.00 0.98
747 751 3.737355 GCCTGTTCTGTCCGACCTTATAC 60.737 52.174 0.00 0.00 0.00 1.47
748 752 3.488721 CCTGTTCTGTCCGACCTTATACG 60.489 52.174 0.00 0.00 0.00 3.06
749 753 3.346315 TGTTCTGTCCGACCTTATACGA 58.654 45.455 0.00 0.00 0.00 3.43
750 754 3.949754 TGTTCTGTCCGACCTTATACGAT 59.050 43.478 0.00 0.00 0.00 3.73
751 755 4.201980 TGTTCTGTCCGACCTTATACGATG 60.202 45.833 0.00 0.00 0.00 3.84
752 756 2.292569 TCTGTCCGACCTTATACGATGC 59.707 50.000 0.00 0.00 0.00 3.91
753 757 1.338973 TGTCCGACCTTATACGATGCC 59.661 52.381 0.00 0.00 0.00 4.40
754 758 1.612463 GTCCGACCTTATACGATGCCT 59.388 52.381 0.00 0.00 0.00 4.75
755 759 2.816087 GTCCGACCTTATACGATGCCTA 59.184 50.000 0.00 0.00 0.00 3.93
756 760 3.254166 GTCCGACCTTATACGATGCCTAA 59.746 47.826 0.00 0.00 0.00 2.69
757 761 4.082354 GTCCGACCTTATACGATGCCTAAT 60.082 45.833 0.00 0.00 0.00 1.73
758 762 4.157289 TCCGACCTTATACGATGCCTAATC 59.843 45.833 0.00 0.00 0.00 1.75
795 799 6.985653 AAAGATGCCTAATCTAGCTAGTGA 57.014 37.500 20.10 2.74 45.37 3.41
796 800 7.552050 AAAGATGCCTAATCTAGCTAGTGAT 57.448 36.000 20.10 5.18 45.37 3.06
797 801 6.528537 AGATGCCTAATCTAGCTAGTGATG 57.471 41.667 20.10 9.49 44.22 3.07
798 802 6.015918 AGATGCCTAATCTAGCTAGTGATGT 58.984 40.000 20.10 5.37 44.22 3.06
799 803 5.459536 TGCCTAATCTAGCTAGTGATGTG 57.540 43.478 20.10 7.44 0.00 3.21
800 804 4.241681 GCCTAATCTAGCTAGTGATGTGC 58.758 47.826 20.10 12.88 0.00 4.57
801 805 4.021544 GCCTAATCTAGCTAGTGATGTGCT 60.022 45.833 20.10 0.00 40.43 4.40
802 806 5.468592 CCTAATCTAGCTAGTGATGTGCTG 58.531 45.833 20.10 3.24 37.62 4.41
803 807 2.879002 TCTAGCTAGTGATGTGCTGC 57.121 50.000 20.10 0.00 37.62 5.25
804 808 1.410517 TCTAGCTAGTGATGTGCTGCC 59.589 52.381 20.10 0.00 37.62 4.85
805 809 0.103026 TAGCTAGTGATGTGCTGCCG 59.897 55.000 0.00 0.00 37.62 5.69
806 810 1.448540 GCTAGTGATGTGCTGCCGT 60.449 57.895 0.00 0.00 0.00 5.68
807 811 1.021390 GCTAGTGATGTGCTGCCGTT 61.021 55.000 0.00 0.00 0.00 4.44
808 812 1.442769 CTAGTGATGTGCTGCCGTTT 58.557 50.000 0.00 0.00 0.00 3.60
809 813 1.129251 CTAGTGATGTGCTGCCGTTTG 59.871 52.381 0.00 0.00 0.00 2.93
810 814 1.081242 GTGATGTGCTGCCGTTTGG 60.081 57.895 0.00 0.00 38.77 3.28
811 815 1.228094 TGATGTGCTGCCGTTTGGA 60.228 52.632 0.00 0.00 37.49 3.53
812 816 0.608856 TGATGTGCTGCCGTTTGGAT 60.609 50.000 0.00 0.00 37.49 3.41
815 819 1.610363 TGTGCTGCCGTTTGGATTAA 58.390 45.000 0.00 0.00 37.49 1.40
822 826 2.817258 TGCCGTTTGGATTAAGAGTTGG 59.183 45.455 0.00 0.00 37.49 3.77
840 844 0.387878 GGACGGCTCGATCTGCTATG 60.388 60.000 7.36 2.13 0.00 2.23
841 845 1.006314 GACGGCTCGATCTGCTATGC 61.006 60.000 7.36 0.00 0.00 3.14
843 847 1.735920 GGCTCGATCTGCTATGCCG 60.736 63.158 7.36 0.00 0.00 5.69
847 851 2.097629 GCTCGATCTGCTATGCCGTATA 59.902 50.000 0.00 0.00 0.00 1.47
905 909 4.022503 ACTCTAAACCCTTATCGCCGATAC 60.023 45.833 6.26 0.00 0.00 2.24
906 910 4.147321 TCTAAACCCTTATCGCCGATACT 58.853 43.478 6.26 0.00 0.00 2.12
907 911 2.814280 AACCCTTATCGCCGATACTG 57.186 50.000 6.26 3.03 0.00 2.74
908 912 1.991121 ACCCTTATCGCCGATACTGA 58.009 50.000 6.26 0.00 0.00 3.41
909 913 2.526432 ACCCTTATCGCCGATACTGAT 58.474 47.619 6.26 0.00 0.00 2.90
910 914 2.897969 ACCCTTATCGCCGATACTGATT 59.102 45.455 6.26 0.00 0.00 2.57
911 915 3.254060 CCCTTATCGCCGATACTGATTG 58.746 50.000 6.26 0.00 0.00 2.67
924 928 0.445436 CTGATTGGACTTGCGACTGC 59.555 55.000 0.00 0.00 43.20 4.40
951 956 2.159282 TGTCGAACGAGAAATAGGGAGC 60.159 50.000 0.00 0.00 0.00 4.70
1054 1059 4.465446 TCCTCCTCCTGCCTCCGG 62.465 72.222 0.00 0.00 0.00 5.14
1118 1123 1.370657 GCCGCTTAGTCTCCGATCG 60.371 63.158 8.51 8.51 0.00 3.69
1293 1304 2.098443 GGAGAGCTTAGACTTCGTGGAG 59.902 54.545 0.00 0.00 0.00 3.86
1321 1332 1.448013 GGCCTCGTCCTTTTCCTCG 60.448 63.158 0.00 0.00 0.00 4.63
1333 1344 3.877508 CCTTTTCCTCGACAAGAAACTGT 59.122 43.478 1.13 0.00 31.93 3.55
1409 1420 0.178992 CCAGAGTTTGGCAACCCTGA 60.179 55.000 18.53 0.00 40.38 3.86
1414 1425 2.430694 GAGTTTGGCAACCCTGAAAAGT 59.569 45.455 0.00 0.00 32.70 2.66
1433 1444 1.055849 TGGGGCATCATATACGCTGT 58.944 50.000 0.00 0.00 0.00 4.40
1510 1521 6.753107 ACCTGGACTATTTTAAATTGGTCG 57.247 37.500 15.85 8.48 0.00 4.79
1548 1559 5.173312 CGTAAAAGACTACAGGCATGTATCG 59.827 44.000 12.22 3.93 41.05 2.92
1591 1606 1.340889 CTGGTGTGTGGGGAAATGTTG 59.659 52.381 0.00 0.00 0.00 3.33
1613 1628 0.531974 TCAACAACGACCACAGGAGC 60.532 55.000 0.00 0.00 0.00 4.70
1617 1632 1.300697 AACGACCACAGGAGCGTTC 60.301 57.895 12.80 0.00 40.64 3.95
1618 1633 2.023414 AACGACCACAGGAGCGTTCA 62.023 55.000 12.80 0.00 40.64 3.18
1631 1646 1.067821 AGCGTTCATTTTTCCGGCAAA 59.932 42.857 0.00 0.00 0.00 3.68
1632 1647 1.861575 GCGTTCATTTTTCCGGCAAAA 59.138 42.857 14.38 14.38 31.73 2.44
1675 1693 3.571828 TGCACTTTGCTGGTTGCTTAATA 59.428 39.130 0.00 0.00 45.31 0.98
1678 1696 5.564651 GCACTTTGCTGGTTGCTTAATAGAA 60.565 40.000 0.00 0.00 40.96 2.10
1714 1732 7.380602 GTGACATCCTTGAGTTTGATTTTGAAG 59.619 37.037 0.00 0.00 0.00 3.02
1716 1734 8.463930 ACATCCTTGAGTTTGATTTTGAAGTA 57.536 30.769 0.00 0.00 0.00 2.24
1731 1749 7.618502 TTTTGAAGTACAGAAGCTTGTTGTA 57.381 32.000 2.10 9.96 32.56 2.41
1733 1751 6.598753 TGAAGTACAGAAGCTTGTTGTAAC 57.401 37.500 17.46 13.07 32.56 2.50
1739 1757 5.053145 ACAGAAGCTTGTTGTAACTGAGAG 58.947 41.667 2.10 0.00 0.00 3.20
1746 1764 2.224281 TGTTGTAACTGAGAGGCCACTG 60.224 50.000 7.70 3.73 0.00 3.66
1762 1780 1.078918 CTGGACTGCGAGATTGCCA 60.079 57.895 0.00 0.00 0.00 4.92
1778 1796 2.115266 CAACCGTGGCCTTCCCTT 59.885 61.111 3.32 0.00 0.00 3.95
1830 1892 3.480470 AGCGGAAGGTCAATTATGATGG 58.520 45.455 0.00 0.00 38.01 3.51
1844 1906 2.877097 TGATGGTGTTGCTACATGGT 57.123 45.000 3.85 0.00 36.50 3.55
1858 1920 4.518970 GCTACATGGTTCCTTCAGAAAACA 59.481 41.667 0.00 0.00 35.85 2.83
1868 1930 6.579666 TCCTTCAGAAAACAATTGATCTGG 57.420 37.500 25.64 17.09 39.74 3.86
1871 1933 6.016024 CCTTCAGAAAACAATTGATCTGGTCA 60.016 38.462 25.64 16.15 39.74 4.02
1905 1967 1.532921 CGTCGAGCTCAGATGGAGTTC 60.533 57.143 15.40 0.00 46.85 3.01
1949 2011 4.650734 TCACAATGTGCTATTTCTGTGGA 58.349 39.130 8.78 0.00 35.87 4.02
1950 2012 5.255687 TCACAATGTGCTATTTCTGTGGAT 58.744 37.500 8.78 0.00 35.87 3.41
1952 2014 7.056006 TCACAATGTGCTATTTCTGTGGATAT 58.944 34.615 8.78 0.00 35.87 1.63
2037 2105 3.941188 CGCCACCACACCTCCAGT 61.941 66.667 0.00 0.00 0.00 4.00
2047 2115 4.165372 ACCACACCTCCAGTAAGAAAAGAA 59.835 41.667 0.00 0.00 0.00 2.52
2082 2150 6.489022 ACCTATGTTCCCTACACAAGTTTTTC 59.511 38.462 0.00 0.00 40.19 2.29
2124 2207 7.915397 CCGGTTCTTACAAATCCAATTATCTTG 59.085 37.037 0.00 0.00 0.00 3.02
2156 2239 2.246469 TGCTGTAATGCCATTGGTGTT 58.754 42.857 4.26 2.54 0.00 3.32
2184 2269 3.828451 GGGTTGCCTACATTCATGCATAT 59.172 43.478 0.00 0.00 33.08 1.78
2185 2270 4.281688 GGGTTGCCTACATTCATGCATATT 59.718 41.667 0.00 0.00 33.08 1.28
2187 2272 5.922544 GGTTGCCTACATTCATGCATATTTC 59.077 40.000 0.00 0.00 33.08 2.17
2188 2273 5.361135 TGCCTACATTCATGCATATTTCG 57.639 39.130 0.00 0.00 0.00 3.46
2189 2274 5.062528 TGCCTACATTCATGCATATTTCGA 58.937 37.500 0.00 0.00 0.00 3.71
2191 2276 6.039159 TGCCTACATTCATGCATATTTCGAAA 59.961 34.615 13.91 13.91 0.00 3.46
2230 2315 9.461312 ACTGTATATTTGCTTCCAGTCAATTTA 57.539 29.630 0.00 0.00 0.00 1.40
2247 2376 8.034804 AGTCAATTTAATTACCATGTGAAAGCC 58.965 33.333 0.00 0.00 0.00 4.35
2252 2381 3.788227 TTACCATGTGAAAGCCAGAGT 57.212 42.857 0.00 0.00 0.00 3.24
2257 2386 4.074970 CCATGTGAAAGCCAGAGTAAAGT 58.925 43.478 0.00 0.00 0.00 2.66
2355 2484 7.038048 TGCTCATCTTCTCATAAACTACACAG 58.962 38.462 0.00 0.00 0.00 3.66
2358 2487 6.813649 TCATCTTCTCATAAACTACACAGCAC 59.186 38.462 0.00 0.00 0.00 4.40
2359 2488 6.096673 TCTTCTCATAAACTACACAGCACA 57.903 37.500 0.00 0.00 0.00 4.57
2423 2554 9.788960 GATTTGAACCATCTTAAATGTTACTCC 57.211 33.333 0.00 0.00 0.00 3.85
2424 2555 7.696992 TTGAACCATCTTAAATGTTACTCCC 57.303 36.000 0.00 0.00 0.00 4.30
2425 2556 7.027874 TGAACCATCTTAAATGTTACTCCCT 57.972 36.000 0.00 0.00 0.00 4.20
2426 2557 7.110155 TGAACCATCTTAAATGTTACTCCCTC 58.890 38.462 0.00 0.00 0.00 4.30
2427 2558 6.002653 ACCATCTTAAATGTTACTCCCTCC 57.997 41.667 0.00 0.00 0.00 4.30
2428 2559 5.057149 CCATCTTAAATGTTACTCCCTCCG 58.943 45.833 0.00 0.00 0.00 4.63
2429 2560 5.396436 CCATCTTAAATGTTACTCCCTCCGT 60.396 44.000 0.00 0.00 0.00 4.69
2430 2561 5.750352 TCTTAAATGTTACTCCCTCCGTT 57.250 39.130 0.00 0.00 0.00 4.44
2431 2562 5.727434 TCTTAAATGTTACTCCCTCCGTTC 58.273 41.667 0.00 0.00 0.00 3.95
2432 2563 3.345508 AAATGTTACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
2433 2564 2.249309 ATGTTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2434 2565 2.905415 TGTTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
2435 2566 3.173953 TGTTACTCCCTCCGTTCCTAA 57.826 47.619 0.00 0.00 0.00 2.69
2436 2567 3.509442 TGTTACTCCCTCCGTTCCTAAA 58.491 45.455 0.00 0.00 0.00 1.85
2437 2568 4.098894 TGTTACTCCCTCCGTTCCTAAAT 58.901 43.478 0.00 0.00 0.00 1.40
2438 2569 5.271598 TGTTACTCCCTCCGTTCCTAAATA 58.728 41.667 0.00 0.00 0.00 1.40
2439 2570 5.901276 TGTTACTCCCTCCGTTCCTAAATAT 59.099 40.000 0.00 0.00 0.00 1.28
2440 2571 7.068702 TGTTACTCCCTCCGTTCCTAAATATA 58.931 38.462 0.00 0.00 0.00 0.86
2441 2572 7.564660 TGTTACTCCCTCCGTTCCTAAATATAA 59.435 37.037 0.00 0.00 0.00 0.98
2442 2573 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2443 2574 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2444 2575 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2445 2576 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2446 2577 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2447 2578 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2448 2579 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2449 2580 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2452 2583 9.257651 CCGTTCCTAAATATAAGTCTTTGTAGG 57.742 37.037 0.00 0.00 0.00 3.18
2453 2584 9.257651 CGTTCCTAAATATAAGTCTTTGTAGGG 57.742 37.037 0.00 0.00 0.00 3.53
2464 2595 6.301169 AGTCTTTGTAGGGATTTCACTAGG 57.699 41.667 0.00 0.00 31.50 3.02
2465 2596 5.785940 AGTCTTTGTAGGGATTTCACTAGGT 59.214 40.000 0.00 0.00 31.50 3.08
2466 2597 5.875359 GTCTTTGTAGGGATTTCACTAGGTG 59.125 44.000 0.00 0.00 31.50 4.00
2467 2598 4.837093 TTGTAGGGATTTCACTAGGTGG 57.163 45.455 0.00 0.00 31.50 4.61
2468 2599 4.069312 TGTAGGGATTTCACTAGGTGGA 57.931 45.455 0.00 0.00 31.50 4.02
2469 2600 3.773119 TGTAGGGATTTCACTAGGTGGAC 59.227 47.826 0.00 0.00 31.50 4.02
2470 2601 3.207044 AGGGATTTCACTAGGTGGACT 57.793 47.619 0.00 0.00 33.87 3.85
2471 2602 4.348020 AGGGATTTCACTAGGTGGACTA 57.652 45.455 0.00 0.00 33.87 2.59
2472 2603 4.031611 AGGGATTTCACTAGGTGGACTAC 58.968 47.826 0.00 0.00 33.87 2.73
2473 2604 3.773119 GGGATTTCACTAGGTGGACTACA 59.227 47.826 0.00 0.00 33.87 2.74
2474 2605 4.409247 GGGATTTCACTAGGTGGACTACAT 59.591 45.833 0.00 0.00 33.87 2.29
2475 2606 5.601313 GGGATTTCACTAGGTGGACTACATA 59.399 44.000 0.00 0.00 33.87 2.29
2476 2607 6.270231 GGGATTTCACTAGGTGGACTACATAT 59.730 42.308 0.00 0.00 33.87 1.78
2477 2608 7.155328 GGATTTCACTAGGTGGACTACATATG 58.845 42.308 0.00 0.00 33.87 1.78
2478 2609 7.015292 GGATTTCACTAGGTGGACTACATATGA 59.985 40.741 10.38 0.00 33.87 2.15
2479 2610 7.727578 TTTCACTAGGTGGACTACATATGAA 57.272 36.000 10.38 0.00 33.87 2.57
2480 2611 6.961360 TCACTAGGTGGACTACATATGAAG 57.039 41.667 10.38 0.00 33.87 3.02
2481 2612 5.302059 TCACTAGGTGGACTACATATGAAGC 59.698 44.000 10.38 0.00 33.87 3.86
2482 2613 5.069119 CACTAGGTGGACTACATATGAAGCA 59.931 44.000 10.38 0.00 0.00 3.91
2483 2614 5.661312 ACTAGGTGGACTACATATGAAGCAA 59.339 40.000 10.38 0.00 0.00 3.91
2484 2615 5.435686 AGGTGGACTACATATGAAGCAAA 57.564 39.130 10.38 0.00 0.00 3.68
2485 2616 5.815581 AGGTGGACTACATATGAAGCAAAA 58.184 37.500 10.38 0.00 0.00 2.44
2486 2617 6.426587 AGGTGGACTACATATGAAGCAAAAT 58.573 36.000 10.38 0.00 0.00 1.82
2487 2618 6.319658 AGGTGGACTACATATGAAGCAAAATG 59.680 38.462 10.38 0.00 0.00 2.32
2488 2619 6.460123 GGTGGACTACATATGAAGCAAAATGG 60.460 42.308 10.38 0.00 0.00 3.16
2489 2620 6.318648 GTGGACTACATATGAAGCAAAATGGA 59.681 38.462 10.38 0.00 0.00 3.41
2490 2621 7.013655 GTGGACTACATATGAAGCAAAATGGAT 59.986 37.037 10.38 0.00 0.00 3.41
2491 2622 7.013559 TGGACTACATATGAAGCAAAATGGATG 59.986 37.037 10.38 0.00 0.00 3.51
2492 2623 7.229306 GGACTACATATGAAGCAAAATGGATGA 59.771 37.037 10.38 0.00 0.00 2.92
2493 2624 8.523915 ACTACATATGAAGCAAAATGGATGAA 57.476 30.769 10.38 0.00 0.00 2.57
2494 2625 9.139734 ACTACATATGAAGCAAAATGGATGAAT 57.860 29.630 10.38 0.00 0.00 2.57
2495 2626 9.622004 CTACATATGAAGCAAAATGGATGAATC 57.378 33.333 10.38 0.00 0.00 2.52
2496 2627 8.246430 ACATATGAAGCAAAATGGATGAATCT 57.754 30.769 10.38 0.00 0.00 2.40
2497 2628 9.358406 ACATATGAAGCAAAATGGATGAATCTA 57.642 29.630 10.38 0.00 0.00 1.98
2498 2629 9.622004 CATATGAAGCAAAATGGATGAATCTAC 57.378 33.333 0.00 0.00 0.00 2.59
2499 2630 7.649533 ATGAAGCAAAATGGATGAATCTACA 57.350 32.000 0.00 0.00 0.00 2.74
2500 2631 6.855836 TGAAGCAAAATGGATGAATCTACAC 58.144 36.000 0.00 0.00 0.00 2.90
2501 2632 6.660521 TGAAGCAAAATGGATGAATCTACACT 59.339 34.615 0.00 0.00 0.00 3.55
2502 2633 7.177216 TGAAGCAAAATGGATGAATCTACACTT 59.823 33.333 0.00 0.00 0.00 3.16
2503 2634 8.579850 AAGCAAAATGGATGAATCTACACTTA 57.420 30.769 0.00 0.00 0.00 2.24
2504 2635 8.579850 AGCAAAATGGATGAATCTACACTTAA 57.420 30.769 0.00 0.00 0.00 1.85
2505 2636 9.023962 AGCAAAATGGATGAATCTACACTTAAA 57.976 29.630 0.00 0.00 0.00 1.52
2506 2637 9.638239 GCAAAATGGATGAATCTACACTTAAAA 57.362 29.630 0.00 0.00 0.00 1.52
2509 2640 9.807649 AAATGGATGAATCTACACTTAAAATGC 57.192 29.630 0.00 0.00 0.00 3.56
2510 2641 7.936496 TGGATGAATCTACACTTAAAATGCA 57.064 32.000 0.00 0.00 0.00 3.96
2511 2642 8.523915 TGGATGAATCTACACTTAAAATGCAT 57.476 30.769 0.00 0.00 0.00 3.96
2512 2643 8.623903 TGGATGAATCTACACTTAAAATGCATC 58.376 33.333 0.00 0.00 0.00 3.91
2513 2644 8.844244 GGATGAATCTACACTTAAAATGCATCT 58.156 33.333 0.00 0.00 0.00 2.90
2525 2656 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
2530 2661 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
2531 2662 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
2532 2663 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
2533 2664 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
2534 2665 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
2535 2666 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
2536 2667 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
2537 2668 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
2538 2669 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
2539 2670 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
2540 2671 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
2541 2672 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
2542 2673 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
2543 2674 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
2544 2675 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
2545 2676 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
2546 2677 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
2547 2678 6.201044 CCGTATGTGGTTCATAGTGAAATCTC 59.799 42.308 0.00 0.00 38.22 2.75
2548 2679 6.980978 CGTATGTGGTTCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 38.22 3.10
2549 2680 8.135529 CGTATGTGGTTCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 38.22 2.43
2550 2681 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
2551 2682 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
2552 2683 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
2553 2684 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
2554 2685 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
2555 2686 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
2556 2687 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
2557 2688 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
2574 2705 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2575 2706 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2576 2707 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2577 2708 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2578 2709 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2579 2710 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2580 2711 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2581 2712 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2582 2713 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
2593 2724 8.544687 AACGGAGGGAGTATATAAGTAACTTT 57.455 34.615 0.00 0.00 0.00 2.66
2619 2750 2.683742 GCACATTTAGGGGCTTAGCTCA 60.684 50.000 6.38 0.00 0.00 4.26
2624 2755 5.104109 ACATTTAGGGGCTTAGCTCACATAA 60.104 40.000 6.38 2.08 0.00 1.90
2630 2761 4.998033 GGGGCTTAGCTCACATAAAGATAC 59.002 45.833 6.38 0.00 0.00 2.24
2681 2812 1.808411 TGTCCACTCATCTTTTCCGC 58.192 50.000 0.00 0.00 0.00 5.54
2685 2816 4.000988 GTCCACTCATCTTTTCCGCTAAA 58.999 43.478 0.00 0.00 0.00 1.85
2696 2827 3.552604 TTCCGCTAAACACAAATCTGC 57.447 42.857 0.00 0.00 0.00 4.26
2701 2832 3.971871 CGCTAAACACAAATCTGCGAAAA 59.028 39.130 0.00 0.00 43.81 2.29
2703 2834 4.976116 GCTAAACACAAATCTGCGAAAACT 59.024 37.500 0.00 0.00 0.00 2.66
2705 2836 6.086371 GCTAAACACAAATCTGCGAAAACTAC 59.914 38.462 0.00 0.00 0.00 2.73
2706 2837 4.483476 ACACAAATCTGCGAAAACTACC 57.517 40.909 0.00 0.00 0.00 3.18
2707 2838 4.134563 ACACAAATCTGCGAAAACTACCT 58.865 39.130 0.00 0.00 0.00 3.08
2708 2839 4.024048 ACACAAATCTGCGAAAACTACCTG 60.024 41.667 0.00 0.00 0.00 4.00
2710 2841 4.024048 ACAAATCTGCGAAAACTACCTGTG 60.024 41.667 0.00 0.00 0.00 3.66
2711 2842 2.902705 TCTGCGAAAACTACCTGTGT 57.097 45.000 0.00 0.00 0.00 3.72
2712 2843 2.479837 TCTGCGAAAACTACCTGTGTG 58.520 47.619 0.00 0.00 0.00 3.82
2713 2844 0.941542 TGCGAAAACTACCTGTGTGC 59.058 50.000 0.00 0.00 0.00 4.57
2714 2845 0.941542 GCGAAAACTACCTGTGTGCA 59.058 50.000 0.00 0.00 0.00 4.57
2715 2846 1.332375 GCGAAAACTACCTGTGTGCAA 59.668 47.619 0.00 0.00 0.00 4.08
2716 2847 2.853281 GCGAAAACTACCTGTGTGCAAC 60.853 50.000 0.00 0.00 37.35 4.17
2721 2895 4.682778 AACTACCTGTGTGCAACTTCTA 57.317 40.909 0.00 0.00 38.04 2.10
2748 2922 3.252701 AGAGTTCTGCTGCAAATGAGTTG 59.747 43.478 3.02 0.00 40.50 3.16
2759 2933 6.347270 TGCAAATGAGTTGATTTGTTTGTG 57.653 33.333 0.00 0.00 42.81 3.33
2762 2936 4.669206 ATGAGTTGATTTGTTTGTGCCA 57.331 36.364 0.00 0.00 0.00 4.92
2785 2959 7.329717 GCCAGACTACCTGATAAGAAATAATCG 59.670 40.741 0.00 0.00 45.78 3.34
2786 2960 7.329717 CCAGACTACCTGATAAGAAATAATCGC 59.670 40.741 0.00 0.00 45.78 4.58
2789 2963 3.746492 ACCTGATAAGAAATAATCGCCGC 59.254 43.478 0.00 0.00 0.00 6.53
2801 2975 2.587194 CGCCGCCATGGAGAGAAG 60.587 66.667 18.40 0.00 40.56 2.85
2810 2984 2.417924 CCATGGAGAGAAGGACAGAACG 60.418 54.545 5.56 0.00 0.00 3.95
2824 2998 1.654105 CAGAACGGTACAAGCATCGAC 59.346 52.381 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 1.133730 TGGTTAGCGTTTTCCCCAAGT 60.134 47.619 0.00 0.00 0.00 3.16
321 323 5.364778 GCCCAAACCTGTAAGAAAATGTTT 58.635 37.500 0.00 0.00 34.07 2.83
322 324 4.500716 CGCCCAAACCTGTAAGAAAATGTT 60.501 41.667 0.00 0.00 34.07 2.71
377 379 3.006217 TCTGCTCCATAATCTCGGTCATG 59.994 47.826 0.00 0.00 0.00 3.07
378 380 3.234353 TCTGCTCCATAATCTCGGTCAT 58.766 45.455 0.00 0.00 0.00 3.06
426 429 5.423610 AGACTCAAGCTTGCTATCCTTCTTA 59.576 40.000 21.99 0.00 0.00 2.10
501 504 4.635223 GTCCCGACAAAGGTAAAGTACTT 58.365 43.478 1.12 1.12 0.00 2.24
502 505 3.305608 CGTCCCGACAAAGGTAAAGTACT 60.306 47.826 0.00 0.00 0.00 2.73
619 623 0.237235 TTTGGAACGAAGATGCACGC 59.763 50.000 0.00 0.00 26.40 5.34
646 650 4.660938 GGACGCTTTGCCCACCCT 62.661 66.667 0.00 0.00 0.00 4.34
648 652 3.365265 CTGGACGCTTTGCCCACC 61.365 66.667 0.00 0.00 0.00 4.61
649 653 2.193536 AACTGGACGCTTTGCCCAC 61.194 57.895 0.00 0.00 0.00 4.61
650 654 2.192861 CAACTGGACGCTTTGCCCA 61.193 57.895 0.00 0.00 0.00 5.36
651 655 1.856265 CTCAACTGGACGCTTTGCCC 61.856 60.000 0.00 0.00 0.00 5.36
652 656 1.166531 ACTCAACTGGACGCTTTGCC 61.167 55.000 0.00 0.00 0.00 4.52
653 657 0.663153 AACTCAACTGGACGCTTTGC 59.337 50.000 0.00 0.00 0.00 3.68
654 658 5.856126 TTATAACTCAACTGGACGCTTTG 57.144 39.130 0.00 0.00 0.00 2.77
655 659 6.093633 GGATTTATAACTCAACTGGACGCTTT 59.906 38.462 5.32 0.00 0.00 3.51
656 660 5.585047 GGATTTATAACTCAACTGGACGCTT 59.415 40.000 5.32 0.00 0.00 4.68
657 661 5.104900 AGGATTTATAACTCAACTGGACGCT 60.105 40.000 5.32 0.00 0.00 5.07
658 662 5.116882 AGGATTTATAACTCAACTGGACGC 58.883 41.667 5.32 0.00 0.00 5.19
659 663 6.019801 CGAAGGATTTATAACTCAACTGGACG 60.020 42.308 5.32 0.00 0.00 4.79
660 664 7.010275 GTCGAAGGATTTATAACTCAACTGGAC 59.990 40.741 5.32 2.76 0.00 4.02
661 665 7.039882 GTCGAAGGATTTATAACTCAACTGGA 58.960 38.462 5.32 0.00 0.00 3.86
662 666 6.258068 GGTCGAAGGATTTATAACTCAACTGG 59.742 42.308 5.32 0.00 0.00 4.00
663 667 6.258068 GGGTCGAAGGATTTATAACTCAACTG 59.742 42.308 5.32 0.00 0.00 3.16
664 668 6.070424 TGGGTCGAAGGATTTATAACTCAACT 60.070 38.462 5.32 0.00 0.00 3.16
665 669 6.036844 GTGGGTCGAAGGATTTATAACTCAAC 59.963 42.308 5.32 0.00 0.00 3.18
666 670 6.110707 GTGGGTCGAAGGATTTATAACTCAA 58.889 40.000 5.32 0.00 0.00 3.02
667 671 5.188163 TGTGGGTCGAAGGATTTATAACTCA 59.812 40.000 5.32 0.00 0.00 3.41
668 672 5.667466 TGTGGGTCGAAGGATTTATAACTC 58.333 41.667 0.00 0.00 0.00 3.01
669 673 5.687166 TGTGGGTCGAAGGATTTATAACT 57.313 39.130 0.00 0.00 0.00 2.24
670 674 6.746745 TTTGTGGGTCGAAGGATTTATAAC 57.253 37.500 0.00 0.00 0.00 1.89
671 675 7.762588 TTTTTGTGGGTCGAAGGATTTATAA 57.237 32.000 0.00 0.00 0.00 0.98
699 703 6.864151 AGTAGTTTCGAAGGGTTTATACCT 57.136 37.500 0.00 0.00 44.38 3.08
700 704 7.170489 GCATAGTAGTTTCGAAGGGTTTATACC 59.830 40.741 0.00 0.00 44.22 2.73
701 705 7.170489 GGCATAGTAGTTTCGAAGGGTTTATAC 59.830 40.741 0.00 0.00 0.00 1.47
702 706 7.070322 AGGCATAGTAGTTTCGAAGGGTTTATA 59.930 37.037 0.00 0.00 0.00 0.98
703 707 6.053650 GGCATAGTAGTTTCGAAGGGTTTAT 58.946 40.000 0.00 0.00 0.00 1.40
704 708 5.188359 AGGCATAGTAGTTTCGAAGGGTTTA 59.812 40.000 0.00 0.00 0.00 2.01
705 709 4.019591 AGGCATAGTAGTTTCGAAGGGTTT 60.020 41.667 0.00 0.00 0.00 3.27
706 710 3.518303 AGGCATAGTAGTTTCGAAGGGTT 59.482 43.478 0.00 0.00 0.00 4.11
707 711 3.105283 AGGCATAGTAGTTTCGAAGGGT 58.895 45.455 0.00 0.00 0.00 4.34
708 712 3.118738 ACAGGCATAGTAGTTTCGAAGGG 60.119 47.826 0.00 0.00 0.00 3.95
709 713 4.124851 ACAGGCATAGTAGTTTCGAAGG 57.875 45.455 0.00 0.00 0.00 3.46
710 714 5.289675 CAGAACAGGCATAGTAGTTTCGAAG 59.710 44.000 0.00 0.00 0.00 3.79
711 715 5.168569 CAGAACAGGCATAGTAGTTTCGAA 58.831 41.667 0.00 0.00 0.00 3.71
712 716 4.219944 ACAGAACAGGCATAGTAGTTTCGA 59.780 41.667 0.00 0.00 0.00 3.71
713 717 4.495422 ACAGAACAGGCATAGTAGTTTCG 58.505 43.478 0.00 0.00 0.00 3.46
714 718 4.870991 GGACAGAACAGGCATAGTAGTTTC 59.129 45.833 0.00 0.00 0.00 2.78
715 719 4.620803 CGGACAGAACAGGCATAGTAGTTT 60.621 45.833 0.00 0.00 0.00 2.66
716 720 3.119101 CGGACAGAACAGGCATAGTAGTT 60.119 47.826 0.00 0.00 0.00 2.24
717 721 2.427453 CGGACAGAACAGGCATAGTAGT 59.573 50.000 0.00 0.00 0.00 2.73
718 722 2.688446 TCGGACAGAACAGGCATAGTAG 59.312 50.000 0.00 0.00 0.00 2.57
719 723 2.426024 GTCGGACAGAACAGGCATAGTA 59.574 50.000 2.62 0.00 0.00 1.82
720 724 1.204941 GTCGGACAGAACAGGCATAGT 59.795 52.381 2.62 0.00 0.00 2.12
721 725 1.471676 GGTCGGACAGAACAGGCATAG 60.472 57.143 10.76 0.00 36.33 2.23
722 726 0.535335 GGTCGGACAGAACAGGCATA 59.465 55.000 10.76 0.00 36.33 3.14
723 727 1.194781 AGGTCGGACAGAACAGGCAT 61.195 55.000 10.76 0.00 39.61 4.40
724 728 1.407656 AAGGTCGGACAGAACAGGCA 61.408 55.000 10.76 0.00 39.61 4.75
725 729 0.606604 TAAGGTCGGACAGAACAGGC 59.393 55.000 10.76 0.00 39.61 4.85
726 730 3.488721 CGTATAAGGTCGGACAGAACAGG 60.489 52.174 10.76 0.00 39.61 4.00
727 731 3.376234 TCGTATAAGGTCGGACAGAACAG 59.624 47.826 10.76 0.00 39.61 3.16
728 732 3.346315 TCGTATAAGGTCGGACAGAACA 58.654 45.455 10.76 0.00 39.61 3.18
729 733 4.288531 CATCGTATAAGGTCGGACAGAAC 58.711 47.826 10.76 0.07 36.63 3.01
730 734 3.243301 GCATCGTATAAGGTCGGACAGAA 60.243 47.826 10.76 0.00 0.00 3.02
731 735 2.292569 GCATCGTATAAGGTCGGACAGA 59.707 50.000 10.76 0.00 0.00 3.41
732 736 2.607282 GGCATCGTATAAGGTCGGACAG 60.607 54.545 10.76 0.00 0.00 3.51
733 737 1.338973 GGCATCGTATAAGGTCGGACA 59.661 52.381 10.76 0.00 0.00 4.02
734 738 1.612463 AGGCATCGTATAAGGTCGGAC 59.388 52.381 0.00 0.00 0.00 4.79
735 739 1.991121 AGGCATCGTATAAGGTCGGA 58.009 50.000 0.00 0.00 0.00 4.55
736 740 3.928727 TTAGGCATCGTATAAGGTCGG 57.071 47.619 0.00 0.00 0.00 4.79
770 774 7.796054 TCACTAGCTAGATTAGGCATCTTTTT 58.204 34.615 27.45 0.00 39.47 1.94
771 775 7.366847 TCACTAGCTAGATTAGGCATCTTTT 57.633 36.000 27.45 0.00 39.47 2.27
772 776 6.985653 TCACTAGCTAGATTAGGCATCTTT 57.014 37.500 27.45 0.00 39.47 2.52
773 777 6.496565 ACATCACTAGCTAGATTAGGCATCTT 59.503 38.462 27.45 0.00 39.47 2.40
774 778 6.015918 ACATCACTAGCTAGATTAGGCATCT 58.984 40.000 27.45 0.00 45.08 2.90
775 779 6.098679 CACATCACTAGCTAGATTAGGCATC 58.901 44.000 27.45 0.00 0.00 3.91
776 780 5.568423 GCACATCACTAGCTAGATTAGGCAT 60.568 44.000 27.45 0.00 0.00 4.40
777 781 4.262207 GCACATCACTAGCTAGATTAGGCA 60.262 45.833 27.45 3.04 0.00 4.75
778 782 4.021544 AGCACATCACTAGCTAGATTAGGC 60.022 45.833 27.45 20.02 36.73 3.93
779 783 5.468592 CAGCACATCACTAGCTAGATTAGG 58.531 45.833 27.45 14.67 36.73 2.69
780 784 4.922692 GCAGCACATCACTAGCTAGATTAG 59.077 45.833 27.45 15.31 36.73 1.73
781 785 4.262207 GGCAGCACATCACTAGCTAGATTA 60.262 45.833 27.45 11.75 36.73 1.75
782 786 3.494048 GGCAGCACATCACTAGCTAGATT 60.494 47.826 27.45 8.26 36.73 2.40
783 787 2.036992 GGCAGCACATCACTAGCTAGAT 59.963 50.000 27.45 8.70 36.73 1.98
784 788 1.410517 GGCAGCACATCACTAGCTAGA 59.589 52.381 27.45 6.45 36.73 2.43
785 789 1.863267 GGCAGCACATCACTAGCTAG 58.137 55.000 19.44 19.44 36.73 3.42
786 790 0.103026 CGGCAGCACATCACTAGCTA 59.897 55.000 0.00 0.00 36.73 3.32
787 791 1.153489 CGGCAGCACATCACTAGCT 60.153 57.895 0.00 0.00 39.63 3.32
788 792 1.021390 AACGGCAGCACATCACTAGC 61.021 55.000 0.00 0.00 0.00 3.42
789 793 1.129251 CAAACGGCAGCACATCACTAG 59.871 52.381 0.00 0.00 0.00 2.57
790 794 1.155889 CAAACGGCAGCACATCACTA 58.844 50.000 0.00 0.00 0.00 2.74
791 795 1.518056 CCAAACGGCAGCACATCACT 61.518 55.000 0.00 0.00 0.00 3.41
792 796 1.081242 CCAAACGGCAGCACATCAC 60.081 57.895 0.00 0.00 0.00 3.06
793 797 0.608856 ATCCAAACGGCAGCACATCA 60.609 50.000 0.00 0.00 0.00 3.07
794 798 0.527565 AATCCAAACGGCAGCACATC 59.472 50.000 0.00 0.00 0.00 3.06
795 799 1.832883 TAATCCAAACGGCAGCACAT 58.167 45.000 0.00 0.00 0.00 3.21
796 800 1.539388 CTTAATCCAAACGGCAGCACA 59.461 47.619 0.00 0.00 0.00 4.57
797 801 1.810151 TCTTAATCCAAACGGCAGCAC 59.190 47.619 0.00 0.00 0.00 4.40
798 802 2.083774 CTCTTAATCCAAACGGCAGCA 58.916 47.619 0.00 0.00 0.00 4.41
799 803 2.084546 ACTCTTAATCCAAACGGCAGC 58.915 47.619 0.00 0.00 0.00 5.25
800 804 3.119849 CCAACTCTTAATCCAAACGGCAG 60.120 47.826 0.00 0.00 0.00 4.85
801 805 2.817258 CCAACTCTTAATCCAAACGGCA 59.183 45.455 0.00 0.00 0.00 5.69
802 806 3.078837 TCCAACTCTTAATCCAAACGGC 58.921 45.455 0.00 0.00 0.00 5.68
803 807 3.124636 CGTCCAACTCTTAATCCAAACGG 59.875 47.826 0.00 0.00 0.00 4.44
804 808 3.124636 CCGTCCAACTCTTAATCCAAACG 59.875 47.826 0.00 0.00 0.00 3.60
805 809 3.119955 GCCGTCCAACTCTTAATCCAAAC 60.120 47.826 0.00 0.00 0.00 2.93
806 810 3.078837 GCCGTCCAACTCTTAATCCAAA 58.921 45.455 0.00 0.00 0.00 3.28
807 811 2.304761 AGCCGTCCAACTCTTAATCCAA 59.695 45.455 0.00 0.00 0.00 3.53
808 812 1.906574 AGCCGTCCAACTCTTAATCCA 59.093 47.619 0.00 0.00 0.00 3.41
809 813 2.552031 GAGCCGTCCAACTCTTAATCC 58.448 52.381 0.00 0.00 0.00 3.01
810 814 2.159282 TCGAGCCGTCCAACTCTTAATC 60.159 50.000 0.00 0.00 0.00 1.75
811 815 1.822990 TCGAGCCGTCCAACTCTTAAT 59.177 47.619 0.00 0.00 0.00 1.40
812 816 1.250328 TCGAGCCGTCCAACTCTTAA 58.750 50.000 0.00 0.00 0.00 1.85
815 819 0.681564 AGATCGAGCCGTCCAACTCT 60.682 55.000 0.00 0.00 0.00 3.24
822 826 1.006314 GCATAGCAGATCGAGCCGTC 61.006 60.000 0.00 0.00 0.00 4.79
840 844 4.870221 ACAAGTCCGATTTTTATACGGC 57.130 40.909 0.00 0.00 45.25 5.68
841 845 6.532657 ACTGTACAAGTCCGATTTTTATACGG 59.467 38.462 0.00 0.00 46.71 4.02
872 876 1.065636 GGGTTTAGAGTGCTGGTACCC 60.066 57.143 10.07 0.00 34.98 3.69
873 877 1.907255 AGGGTTTAGAGTGCTGGTACC 59.093 52.381 4.43 4.43 0.00 3.34
874 878 3.697619 AAGGGTTTAGAGTGCTGGTAC 57.302 47.619 0.00 0.00 0.00 3.34
905 909 0.445436 GCAGTCGCAAGTCCAATCAG 59.555 55.000 0.00 0.00 38.36 2.90
906 910 1.291184 CGCAGTCGCAAGTCCAATCA 61.291 55.000 0.00 0.00 38.40 2.57
907 911 1.014044 TCGCAGTCGCAAGTCCAATC 61.014 55.000 0.00 0.00 38.40 2.67
908 912 1.005037 TCGCAGTCGCAAGTCCAAT 60.005 52.632 0.00 0.00 38.40 3.16
909 913 1.664649 CTCGCAGTCGCAAGTCCAA 60.665 57.895 0.00 0.00 38.40 3.53
910 914 2.049156 CTCGCAGTCGCAAGTCCA 60.049 61.111 0.00 0.00 38.40 4.02
911 915 3.482783 GCTCGCAGTCGCAAGTCC 61.483 66.667 0.00 0.00 38.40 3.85
924 928 0.386858 TTTCTCGTTCGACAGGCTCG 60.387 55.000 0.00 0.00 44.44 5.03
926 930 2.159226 CCTATTTCTCGTTCGACAGGCT 60.159 50.000 0.00 0.00 0.00 4.58
951 956 2.417243 GCGGACCATGGAAATTGGAAAG 60.417 50.000 21.47 0.00 37.69 2.62
1054 1059 3.844090 GAGCAGGGAGGACGGCTC 61.844 72.222 2.86 2.86 44.97 4.70
1270 1275 2.096248 CACGAAGTCTAAGCTCTCCCT 58.904 52.381 0.00 0.00 41.61 4.20
1321 1332 1.149148 GCCTCGGACAGTTTCTTGTC 58.851 55.000 0.00 0.00 45.28 3.18
1380 1391 0.890683 CAAACTCTGGTGGAATGGCC 59.109 55.000 0.00 0.00 37.10 5.36
1405 1416 1.856629 ATGATGCCCCACTTTTCAGG 58.143 50.000 0.00 0.00 0.00 3.86
1409 1420 2.884639 GCGTATATGATGCCCCACTTTT 59.115 45.455 0.00 0.00 33.55 2.27
1414 1425 1.055849 ACAGCGTATATGATGCCCCA 58.944 50.000 10.09 0.00 41.44 4.96
1472 1483 3.127533 GGTCGCAGTCACCATGCC 61.128 66.667 0.00 0.00 40.67 4.40
1476 1487 2.523168 TCCAGGTCGCAGTCACCA 60.523 61.111 0.00 0.00 36.23 4.17
1479 1490 1.557099 AATAGTCCAGGTCGCAGTCA 58.443 50.000 0.00 0.00 0.00 3.41
1528 1539 3.741388 GCCGATACATGCCTGTAGTCTTT 60.741 47.826 7.89 0.00 41.05 2.52
1534 1545 1.810031 GCAAGCCGATACATGCCTGTA 60.810 52.381 4.22 4.22 41.92 2.74
1548 1559 0.178068 TGGATTCGTAGAGGCAAGCC 59.822 55.000 2.02 2.02 38.43 4.35
1591 1606 1.202486 TCCTGTGGTCGTTGTTGAGAC 60.202 52.381 0.00 0.00 36.70 3.36
1613 1628 2.219903 GGTTTTGCCGGAAAAATGAACG 59.780 45.455 23.23 0.00 35.27 3.95
1617 1632 2.142319 CTGGGTTTTGCCGGAAAAATG 58.858 47.619 23.23 10.34 35.27 2.32
1618 1633 1.542328 GCTGGGTTTTGCCGGAAAAAT 60.542 47.619 23.23 0.00 35.27 1.82
1631 1646 2.030562 CGACAAGGACGCTGGGTT 59.969 61.111 0.00 0.00 0.00 4.11
1632 1647 4.003788 CCGACAAGGACGCTGGGT 62.004 66.667 0.00 0.00 45.00 4.51
1675 1693 5.053978 AGGATGTCACCTTCAGTTTTTCT 57.946 39.130 0.00 0.00 36.86 2.52
1678 1696 4.792068 TCAAGGATGTCACCTTCAGTTTT 58.208 39.130 0.00 0.00 46.94 2.43
1714 1732 5.983720 TCTCAGTTACAACAAGCTTCTGTAC 59.016 40.000 14.66 11.07 0.00 2.90
1716 1734 5.023533 TCTCAGTTACAACAAGCTTCTGT 57.976 39.130 13.73 13.73 0.00 3.41
1731 1749 0.472734 AGTCCAGTGGCCTCTCAGTT 60.473 55.000 3.81 0.00 0.00 3.16
1733 1751 1.595882 CAGTCCAGTGGCCTCTCAG 59.404 63.158 3.81 0.00 0.00 3.35
1739 1757 2.527951 AATCTCGCAGTCCAGTGGCC 62.528 60.000 3.51 0.00 0.00 5.36
1746 1764 1.648467 GGTTGGCAATCTCGCAGTCC 61.648 60.000 1.92 0.00 0.00 3.85
1762 1780 2.434774 GAAGGGAAGGCCACGGTT 59.565 61.111 5.01 0.00 35.15 4.44
1772 1790 1.134098 GCATGATTCGGAGGAAGGGAA 60.134 52.381 0.00 0.00 35.19 3.97
1830 1892 3.146066 TGAAGGAACCATGTAGCAACAC 58.854 45.455 0.00 0.00 38.78 3.32
1844 1906 6.550854 ACCAGATCAATTGTTTTCTGAAGGAA 59.449 34.615 24.41 0.00 38.25 3.36
1868 1930 2.954611 GGGCGAAAGGTGCTTGAC 59.045 61.111 0.00 0.00 0.00 3.18
1871 1933 2.668550 GACGGGCGAAAGGTGCTT 60.669 61.111 0.00 0.00 0.00 3.91
1896 1958 6.053005 TCGTACCCATTTATTGAACTCCATC 58.947 40.000 0.00 0.00 0.00 3.51
1905 1967 6.147821 GTGATCCTCATCGTACCCATTTATTG 59.852 42.308 0.00 0.00 0.00 1.90
1906 1968 6.183361 TGTGATCCTCATCGTACCCATTTATT 60.183 38.462 0.00 0.00 0.00 1.40
1910 1972 3.038280 TGTGATCCTCATCGTACCCATT 58.962 45.455 0.00 0.00 0.00 3.16
2004 2072 1.140407 GGCGTCGAGATTGGTTCGAG 61.140 60.000 0.00 0.00 46.50 4.04
2037 2105 9.667107 CATAGGTGGTGTAGATTTCTTTTCTTA 57.333 33.333 0.00 0.00 0.00 2.10
2047 2115 4.371681 AGGGAACATAGGTGGTGTAGATT 58.628 43.478 0.00 0.00 0.00 2.40
2082 2150 0.882042 CCGGCTATTACCTGCAGCAG 60.882 60.000 16.23 16.23 37.02 4.24
2124 2207 1.384525 TTACAGCAACCACACACCAC 58.615 50.000 0.00 0.00 0.00 4.16
2156 2239 4.919774 TGAATGTAGGCAACCCTTAAGA 57.080 40.909 3.36 0.00 42.87 2.10
2202 2287 9.632638 AATTGACTGGAAGCAAATATACAGTAT 57.367 29.630 0.00 0.00 39.08 2.12
2203 2288 9.461312 AAATTGACTGGAAGCAAATATACAGTA 57.539 29.630 0.00 0.00 39.08 2.74
2204 2289 7.944729 AATTGACTGGAAGCAAATATACAGT 57.055 32.000 0.00 0.00 41.40 3.55
2211 2296 8.592809 TGGTAATTAAATTGACTGGAAGCAAAT 58.407 29.630 0.00 0.00 37.60 2.32
2216 2301 8.739039 TCACATGGTAATTAAATTGACTGGAAG 58.261 33.333 0.00 0.00 42.29 3.46
2230 2315 4.666512 ACTCTGGCTTTCACATGGTAATT 58.333 39.130 0.00 0.00 0.00 1.40
2247 2376 4.241681 GGAGACAGCAGAACTTTACTCTG 58.758 47.826 0.00 0.00 42.73 3.35
2252 2381 3.840666 AGATGGGAGACAGCAGAACTTTA 59.159 43.478 0.00 0.00 38.15 1.85
2257 2386 3.072915 TCAAAAGATGGGAGACAGCAGAA 59.927 43.478 0.00 0.00 38.15 3.02
2355 2484 5.405269 GGTACTTTGGTCAATTTCATTGTGC 59.595 40.000 0.00 0.00 41.02 4.57
2358 2487 7.493971 TGTTTGGTACTTTGGTCAATTTCATTG 59.506 33.333 0.00 0.00 41.57 2.82
2359 2488 7.494298 GTGTTTGGTACTTTGGTCAATTTCATT 59.506 33.333 0.00 0.00 0.00 2.57
2420 2551 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2421 2552 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2422 2553 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2423 2554 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2424 2555 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2426 2557 9.257651 CCTACAAAGACTTATATTTAGGAACGG 57.742 37.037 0.00 0.00 0.00 4.44
2427 2558 9.257651 CCCTACAAAGACTTATATTTAGGAACG 57.742 37.037 0.00 0.00 0.00 3.95
2438 2569 8.487028 CCTAGTGAAATCCCTACAAAGACTTAT 58.513 37.037 0.00 0.00 0.00 1.73
2439 2570 7.456902 ACCTAGTGAAATCCCTACAAAGACTTA 59.543 37.037 0.00 0.00 0.00 2.24
2440 2571 6.272558 ACCTAGTGAAATCCCTACAAAGACTT 59.727 38.462 0.00 0.00 0.00 3.01
2441 2572 5.785940 ACCTAGTGAAATCCCTACAAAGACT 59.214 40.000 0.00 0.00 0.00 3.24
2442 2573 5.875359 CACCTAGTGAAATCCCTACAAAGAC 59.125 44.000 0.00 0.00 35.23 3.01
2443 2574 5.045869 CCACCTAGTGAAATCCCTACAAAGA 60.046 44.000 0.00 0.00 35.23 2.52
2444 2575 5.045869 TCCACCTAGTGAAATCCCTACAAAG 60.046 44.000 0.00 0.00 35.23 2.77
2445 2576 4.847512 TCCACCTAGTGAAATCCCTACAAA 59.152 41.667 0.00 0.00 35.23 2.83
2446 2577 4.224370 GTCCACCTAGTGAAATCCCTACAA 59.776 45.833 0.00 0.00 35.23 2.41
2447 2578 3.773119 GTCCACCTAGTGAAATCCCTACA 59.227 47.826 0.00 0.00 35.23 2.74
2448 2579 4.031611 AGTCCACCTAGTGAAATCCCTAC 58.968 47.826 0.00 0.00 35.23 3.18
2449 2580 4.348020 AGTCCACCTAGTGAAATCCCTA 57.652 45.455 0.00 0.00 35.23 3.53
2450 2581 3.207044 AGTCCACCTAGTGAAATCCCT 57.793 47.619 0.00 0.00 35.23 4.20
2451 2582 3.773119 TGTAGTCCACCTAGTGAAATCCC 59.227 47.826 0.00 0.00 35.23 3.85
2452 2583 5.615925 ATGTAGTCCACCTAGTGAAATCC 57.384 43.478 0.00 0.00 35.23 3.01
2453 2584 7.952671 TCATATGTAGTCCACCTAGTGAAATC 58.047 38.462 1.90 0.00 35.23 2.17
2454 2585 7.914427 TCATATGTAGTCCACCTAGTGAAAT 57.086 36.000 1.90 0.00 35.23 2.17
2455 2586 7.632898 GCTTCATATGTAGTCCACCTAGTGAAA 60.633 40.741 10.61 0.00 35.23 2.69
2456 2587 6.183360 GCTTCATATGTAGTCCACCTAGTGAA 60.183 42.308 10.61 0.00 35.23 3.18
2457 2588 5.302059 GCTTCATATGTAGTCCACCTAGTGA 59.698 44.000 10.61 0.00 35.23 3.41
2458 2589 5.069119 TGCTTCATATGTAGTCCACCTAGTG 59.931 44.000 10.61 0.00 0.00 2.74
2459 2590 5.208890 TGCTTCATATGTAGTCCACCTAGT 58.791 41.667 10.61 0.00 0.00 2.57
2460 2591 5.791336 TGCTTCATATGTAGTCCACCTAG 57.209 43.478 10.61 0.00 0.00 3.02
2461 2592 6.553953 TTTGCTTCATATGTAGTCCACCTA 57.446 37.500 10.61 0.00 0.00 3.08
2462 2593 5.435686 TTTGCTTCATATGTAGTCCACCT 57.564 39.130 10.61 0.00 0.00 4.00
2463 2594 6.460123 CCATTTTGCTTCATATGTAGTCCACC 60.460 42.308 10.61 0.00 0.00 4.61
2464 2595 6.318648 TCCATTTTGCTTCATATGTAGTCCAC 59.681 38.462 10.61 0.00 0.00 4.02
2465 2596 6.422333 TCCATTTTGCTTCATATGTAGTCCA 58.578 36.000 10.61 0.00 0.00 4.02
2466 2597 6.942532 TCCATTTTGCTTCATATGTAGTCC 57.057 37.500 10.61 0.00 0.00 3.85
2467 2598 8.158169 TCATCCATTTTGCTTCATATGTAGTC 57.842 34.615 10.61 4.54 0.00 2.59
2468 2599 8.523915 TTCATCCATTTTGCTTCATATGTAGT 57.476 30.769 10.61 0.00 0.00 2.73
2469 2600 9.622004 GATTCATCCATTTTGCTTCATATGTAG 57.378 33.333 5.04 5.04 0.00 2.74
2470 2601 9.358406 AGATTCATCCATTTTGCTTCATATGTA 57.642 29.630 1.90 0.00 0.00 2.29
2471 2602 8.246430 AGATTCATCCATTTTGCTTCATATGT 57.754 30.769 1.90 0.00 0.00 2.29
2472 2603 9.622004 GTAGATTCATCCATTTTGCTTCATATG 57.378 33.333 0.00 0.00 0.00 1.78
2473 2604 9.358406 TGTAGATTCATCCATTTTGCTTCATAT 57.642 29.630 0.00 0.00 0.00 1.78
2474 2605 8.623903 GTGTAGATTCATCCATTTTGCTTCATA 58.376 33.333 0.00 0.00 0.00 2.15
2475 2606 7.341256 AGTGTAGATTCATCCATTTTGCTTCAT 59.659 33.333 0.00 0.00 0.00 2.57
2476 2607 6.660521 AGTGTAGATTCATCCATTTTGCTTCA 59.339 34.615 0.00 0.00 0.00 3.02
2477 2608 7.093322 AGTGTAGATTCATCCATTTTGCTTC 57.907 36.000 0.00 0.00 0.00 3.86
2478 2609 7.472334 AAGTGTAGATTCATCCATTTTGCTT 57.528 32.000 0.00 0.00 0.00 3.91
2479 2610 8.579850 TTAAGTGTAGATTCATCCATTTTGCT 57.420 30.769 0.00 0.00 0.00 3.91
2480 2611 9.638239 TTTTAAGTGTAGATTCATCCATTTTGC 57.362 29.630 0.00 0.00 0.00 3.68
2483 2614 9.807649 GCATTTTAAGTGTAGATTCATCCATTT 57.192 29.630 0.00 0.00 0.00 2.32
2484 2615 8.970020 TGCATTTTAAGTGTAGATTCATCCATT 58.030 29.630 0.00 0.00 0.00 3.16
2485 2616 8.523915 TGCATTTTAAGTGTAGATTCATCCAT 57.476 30.769 0.00 0.00 0.00 3.41
2486 2617 7.936496 TGCATTTTAAGTGTAGATTCATCCA 57.064 32.000 0.00 0.00 0.00 3.41
2487 2618 8.844244 AGATGCATTTTAAGTGTAGATTCATCC 58.156 33.333 0.00 0.00 0.00 3.51
2499 2630 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
2503 2634 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2504 2635 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
2505 2636 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
2506 2637 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
2507 2638 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
2508 2639 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
2509 2640 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
2510 2641 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
2511 2642 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
2512 2643 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
2513 2644 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
2514 2645 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
2515 2646 7.449086 TCACTATGAACCACATACGGATGTATA 59.551 37.037 14.23 6.48 44.82 1.47
2516 2647 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
2517 2648 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
2518 2649 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
2519 2650 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
2520 2651 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
2521 2652 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
2522 2653 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
2523 2654 6.980978 AGAGATTTCACTATGAACCACATACG 59.019 38.462 0.00 0.00 35.89 3.06
2524 2655 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
2525 2656 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
2526 2657 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
2527 2658 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
2528 2659 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
2529 2660 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
2530 2661 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
2531 2662 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
2549 2680 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2550 2681 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2551 2682 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2552 2683 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2553 2684 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2554 2685 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2555 2686 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2556 2687 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2560 2691 9.471702 CTTATATACTCCCTCCGTTCCTAAATA 57.528 37.037 0.00 0.00 0.00 1.40
2561 2692 7.954620 ACTTATATACTCCCTCCGTTCCTAAAT 59.045 37.037 0.00 0.00 0.00 1.40
2562 2693 7.300658 ACTTATATACTCCCTCCGTTCCTAAA 58.699 38.462 0.00 0.00 0.00 1.85
2563 2694 6.856757 ACTTATATACTCCCTCCGTTCCTAA 58.143 40.000 0.00 0.00 0.00 2.69
2564 2695 6.460103 ACTTATATACTCCCTCCGTTCCTA 57.540 41.667 0.00 0.00 0.00 2.94
2565 2696 5.336491 ACTTATATACTCCCTCCGTTCCT 57.664 43.478 0.00 0.00 0.00 3.36
2566 2697 6.718912 AGTTACTTATATACTCCCTCCGTTCC 59.281 42.308 0.00 0.00 0.00 3.62
2567 2698 7.757941 AGTTACTTATATACTCCCTCCGTTC 57.242 40.000 0.00 0.00 0.00 3.95
2568 2699 8.544687 AAAGTTACTTATATACTCCCTCCGTT 57.455 34.615 0.00 0.00 0.00 4.44
2569 2700 9.819754 ATAAAGTTACTTATATACTCCCTCCGT 57.180 33.333 0.00 0.00 0.00 4.69
2593 2724 4.340950 GCTAAGCCCCTAAATGTGCAAATA 59.659 41.667 0.00 0.00 0.00 1.40
2606 2737 3.115390 TCTTTATGTGAGCTAAGCCCCT 58.885 45.455 0.00 0.00 0.00 4.79
2608 2739 5.611374 TGTATCTTTATGTGAGCTAAGCCC 58.389 41.667 0.00 0.00 0.00 5.19
2645 2776 8.264347 TGAGTGGACATAAATACTATCTTGCAA 58.736 33.333 0.00 0.00 0.00 4.08
2646 2777 7.791029 TGAGTGGACATAAATACTATCTTGCA 58.209 34.615 0.00 0.00 0.00 4.08
2666 2797 4.213270 TGTGTTTAGCGGAAAAGATGAGTG 59.787 41.667 0.00 0.00 0.00 3.51
2681 2812 6.577427 GGTAGTTTTCGCAGATTTGTGTTTAG 59.423 38.462 0.00 0.00 35.04 1.85
2685 2816 4.024048 CAGGTAGTTTTCGCAGATTTGTGT 60.024 41.667 0.00 0.00 35.04 3.72
2696 2827 2.612212 AGTTGCACACAGGTAGTTTTCG 59.388 45.455 0.00 0.00 0.00 3.46
2701 2832 4.891992 ATAGAAGTTGCACACAGGTAGT 57.108 40.909 0.00 0.00 0.00 2.73
2703 2834 5.222079 TGAATAGAAGTTGCACACAGGTA 57.778 39.130 0.00 0.00 0.00 3.08
2705 2836 4.756642 TCTTGAATAGAAGTTGCACACAGG 59.243 41.667 0.00 0.00 0.00 4.00
2706 2837 5.468072 ACTCTTGAATAGAAGTTGCACACAG 59.532 40.000 0.00 0.00 30.91 3.66
2707 2838 5.368145 ACTCTTGAATAGAAGTTGCACACA 58.632 37.500 0.00 0.00 30.91 3.72
2708 2839 5.931441 ACTCTTGAATAGAAGTTGCACAC 57.069 39.130 0.00 0.00 30.91 3.82
2710 2841 6.597614 CAGAACTCTTGAATAGAAGTTGCAC 58.402 40.000 0.00 0.00 30.91 4.57
2711 2842 5.180117 GCAGAACTCTTGAATAGAAGTTGCA 59.820 40.000 0.00 0.00 30.91 4.08
2712 2843 5.411053 AGCAGAACTCTTGAATAGAAGTTGC 59.589 40.000 0.00 0.00 30.91 4.17
2713 2844 6.620303 GCAGCAGAACTCTTGAATAGAAGTTG 60.620 42.308 0.00 0.00 30.91 3.16
2714 2845 5.411053 GCAGCAGAACTCTTGAATAGAAGTT 59.589 40.000 0.00 0.00 30.91 2.66
2715 2846 4.934602 GCAGCAGAACTCTTGAATAGAAGT 59.065 41.667 0.00 0.00 30.91 3.01
2716 2847 4.934001 TGCAGCAGAACTCTTGAATAGAAG 59.066 41.667 0.00 0.00 30.91 2.85
2721 2895 4.521639 TCATTTGCAGCAGAACTCTTGAAT 59.478 37.500 0.00 0.00 0.00 2.57
2748 2922 3.821033 AGGTAGTCTGGCACAAACAAATC 59.179 43.478 0.00 0.00 38.70 2.17
2759 2933 7.329717 CGATTATTTCTTATCAGGTAGTCTGGC 59.670 40.741 0.00 0.00 43.53 4.85
2762 2936 7.379750 GGCGATTATTTCTTATCAGGTAGTCT 58.620 38.462 0.00 0.00 0.00 3.24
2785 2959 2.203126 CCTTCTCTCCATGGCGGC 60.203 66.667 6.96 0.00 33.14 6.53
2786 2960 1.144936 GTCCTTCTCTCCATGGCGG 59.855 63.158 6.96 2.23 0.00 6.13
2789 2963 2.417924 CGTTCTGTCCTTCTCTCCATGG 60.418 54.545 4.97 4.97 0.00 3.66
2799 2973 1.414919 TGCTTGTACCGTTCTGTCCTT 59.585 47.619 0.00 0.00 0.00 3.36
2801 2975 2.000447 GATGCTTGTACCGTTCTGTCC 59.000 52.381 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.