Multiple sequence alignment - TraesCS5D01G302200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G302200 chr5D 100.000 4919 0 0 1 4919 398536045 398540963 0.000000e+00 9084.0
1 TraesCS5D01G302200 chr5D 100.000 417 0 0 5035 5451 398541079 398541495 0.000000e+00 771.0
2 TraesCS5D01G302200 chr5D 98.801 417 5 0 5035 5451 319477421 319477005 0.000000e+00 743.0
3 TraesCS5D01G302200 chr5A 96.256 4594 140 11 1 4576 503528920 503533499 0.000000e+00 7502.0
4 TraesCS5D01G302200 chr5A 93.578 109 7 0 4575 4683 503533559 503533667 4.370000e-36 163.0
5 TraesCS5D01G302200 chr5A 100.000 46 0 0 4703 4748 503533666 503533711 9.730000e-13 86.1
6 TraesCS5D01G302200 chr5B 95.351 4689 183 16 250 4919 478487713 478492385 0.000000e+00 7419.0
7 TraesCS5D01G302200 chr5B 97.717 219 4 1 1 219 478487495 478487712 5.150000e-100 375.0
8 TraesCS5D01G302200 chr6B 84.785 1045 134 20 3723 4753 642964145 642963112 0.000000e+00 1026.0
9 TraesCS5D01G302200 chr6B 85.437 206 26 3 1219 1424 642972512 642972311 1.540000e-50 211.0
10 TraesCS5D01G302200 chr6B 78.218 202 36 7 2500 2694 642965340 642965140 7.410000e-24 122.0
11 TraesCS5D01G302200 chr6D 84.145 1047 138 23 3723 4753 427123685 427122651 0.000000e+00 989.0
12 TraesCS5D01G302200 chr6D 98.561 417 6 0 5035 5451 97306306 97306722 0.000000e+00 737.0
13 TraesCS5D01G302200 chr6D 98.561 417 6 0 5035 5451 130698497 130698913 0.000000e+00 737.0
14 TraesCS5D01G302200 chr6D 80.769 286 39 10 1219 1493 427126878 427126598 5.530000e-50 209.0
15 TraesCS5D01G302200 chr6D 76.371 237 45 8 2468 2694 427124904 427124669 3.450000e-22 117.0
16 TraesCS5D01G302200 chr6A 85.838 925 117 12 3723 4637 571845714 571844794 0.000000e+00 970.0
17 TraesCS5D01G302200 chr6A 84.951 206 27 3 1219 1424 571848755 571848554 7.160000e-49 206.0
18 TraesCS5D01G302200 chr3D 98.801 417 5 0 5035 5451 43764055 43763639 0.000000e+00 743.0
19 TraesCS5D01G302200 chr3D 98.801 417 5 0 5035 5451 407594899 407595315 0.000000e+00 743.0
20 TraesCS5D01G302200 chr2D 98.804 418 4 1 5035 5451 50675162 50674745 0.000000e+00 743.0
21 TraesCS5D01G302200 chr2D 98.801 417 5 0 5035 5451 318693223 318692807 0.000000e+00 743.0
22 TraesCS5D01G302200 chr1D 98.801 417 5 0 5035 5451 47926333 47926749 0.000000e+00 743.0
23 TraesCS5D01G302200 chr1D 98.795 415 5 0 5037 5451 316728441 316728855 0.000000e+00 739.0
24 TraesCS5D01G302200 chrUn 89.433 388 41 0 3822 4209 30169821 30170208 1.760000e-134 490.0
25 TraesCS5D01G302200 chrUn 85.328 259 33 5 4207 4462 30182680 30182936 4.190000e-66 263.0
26 TraesCS5D01G302200 chr4B 82.131 291 41 8 4182 4463 666802089 666801801 7.060000e-59 239.0
27 TraesCS5D01G302200 chr1B 90.000 50 4 1 4409 4458 323637196 323637244 4.560000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G302200 chr5D 398536045 398541495 5450 False 4927.500000 9084 100.000000 1 5451 2 chr5D.!!$F1 5450
1 TraesCS5D01G302200 chr5A 503528920 503533711 4791 False 2583.700000 7502 96.611333 1 4748 3 chr5A.!!$F1 4747
2 TraesCS5D01G302200 chr5B 478487495 478492385 4890 False 3897.000000 7419 96.534000 1 4919 2 chr5B.!!$F1 4918
3 TraesCS5D01G302200 chr6B 642963112 642965340 2228 True 574.000000 1026 81.501500 2500 4753 2 chr6B.!!$R2 2253
4 TraesCS5D01G302200 chr6D 427122651 427126878 4227 True 438.333333 989 80.428333 1219 4753 3 chr6D.!!$R1 3534
5 TraesCS5D01G302200 chr6A 571844794 571848755 3961 True 588.000000 970 85.394500 1219 4637 2 chr6A.!!$R1 3418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 2.052104 CGGAAATGCCAGGGTTCCC 61.052 63.158 0.00 0.00 38.05 3.97 F
1038 1050 2.492088 TCATATCGCGATCGGGAAGAAT 59.508 45.455 34.15 24.41 40.40 2.40 F
1791 1927 2.546795 GGGTCAAGGTGAGATCATAGCG 60.547 54.545 0.00 0.00 0.00 4.26 F
2673 3446 2.298163 CAGGAAGCTGAACAAGGCATTT 59.702 45.455 0.00 0.00 0.00 2.32 F
3899 4748 1.499438 AGGACCGTATCAGGATCCTCA 59.501 52.381 12.69 0.00 37.28 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 1888 3.600388 ACCCGATGACAATTCTCTTGAC 58.400 45.455 0.00 0.0 0.00 3.18 R
2329 2955 1.143813 ATCACCCCATCCTCATCCAC 58.856 55.000 0.00 0.0 0.00 4.02 R
3077 3904 3.623060 GGCGACAAGATGCTTTCTTCATA 59.377 43.478 0.00 0.0 42.98 2.15 R
4036 4885 1.744368 CAGCGGCTTCATCTGCACT 60.744 57.895 0.00 0.0 40.71 4.40 R
4842 5790 0.104120 TCGTATTAGCTGCACCGCAT 59.896 50.000 1.02 0.0 38.13 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 2.092429 GTGAGATGGGATGGCCTGTAAA 60.092 50.000 3.32 0.00 0.00 2.01
171 172 4.916041 TCAAAAGTCAGTCATGGAGGAT 57.084 40.909 0.00 0.00 0.00 3.24
195 196 4.002906 TCATGTTTAGAAGCGACTTGGT 57.997 40.909 0.00 0.00 0.00 3.67
230 231 2.052104 CGGAAATGCCAGGGTTCCC 61.052 63.158 0.00 0.00 38.05 3.97
244 245 2.701951 GGGTTCCCATCAGGATTACGTA 59.298 50.000 2.59 0.00 46.94 3.57
434 444 8.222433 ACATTCATGCAACATGTTTTATTTTCG 58.778 29.630 8.77 0.00 0.00 3.46
653 665 3.619929 TCAGACATTGACTTGATGATGCG 59.380 43.478 0.00 0.00 0.00 4.73
877 889 7.169813 CCCAAAACTTTTAGAGCATTTTCAGAC 59.830 37.037 0.00 0.00 0.00 3.51
910 922 3.909776 TGTAGTCTTAGGTCGTGTGTG 57.090 47.619 0.00 0.00 0.00 3.82
952 964 8.944029 CCAGATAGCAAAACCAGAATATAGATG 58.056 37.037 0.00 0.00 0.00 2.90
1038 1050 2.492088 TCATATCGCGATCGGGAAGAAT 59.508 45.455 34.15 24.41 40.40 2.40
1208 1220 3.906720 TGGTTAGATGCCCTTCAGTAC 57.093 47.619 0.00 0.00 0.00 2.73
1485 1508 5.163447 ACAGCGGTGCTTATTAGAGTTCATA 60.163 40.000 15.82 0.00 36.40 2.15
1518 1541 8.834465 GCATTCTAGTCATGTGATATTTGTTCT 58.166 33.333 0.00 0.00 0.00 3.01
1528 1552 9.447040 CATGTGATATTTGTTCTCAATCATGAC 57.553 33.333 0.00 0.00 33.32 3.06
1752 1888 5.774498 AAACCTGGTAAAGAAGCTCAAAG 57.226 39.130 0.00 0.00 0.00 2.77
1791 1927 2.546795 GGGTCAAGGTGAGATCATAGCG 60.547 54.545 0.00 0.00 0.00 4.26
1802 1938 6.804295 GGTGAGATCATAGCGTGAACTAATAG 59.196 42.308 0.00 0.00 39.75 1.73
1998 2587 7.342284 TCCACTAGGTATAGTTTCTCCAAAGAG 59.658 40.741 0.00 0.00 40.38 2.85
2287 2911 4.702131 GGTTCAGAGTTTTGATACATGCCT 59.298 41.667 0.00 0.00 0.00 4.75
2329 2955 3.511699 TCATTTCAGGAAGACGATGTCG 58.488 45.455 0.11 0.11 46.33 4.35
2470 3110 3.749088 AGTTTGACGACACACACAGAAAA 59.251 39.130 6.92 0.00 0.00 2.29
2673 3446 2.298163 CAGGAAGCTGAACAAGGCATTT 59.702 45.455 0.00 0.00 0.00 2.32
2674 3447 2.967887 AGGAAGCTGAACAAGGCATTTT 59.032 40.909 0.00 0.00 0.00 1.82
2694 3467 8.767478 CATTTTGGAAATAAATGCTTCTGAGT 57.233 30.769 0.00 0.00 36.51 3.41
2695 3468 9.211485 CATTTTGGAAATAAATGCTTCTGAGTT 57.789 29.630 0.00 0.00 36.51 3.01
2728 3519 4.545208 TTTCTGGTGATGACATACGGAA 57.455 40.909 0.00 0.00 33.05 4.30
2917 3737 2.808919 TCACGAGTCAGGAAGAGGAAT 58.191 47.619 0.00 0.00 0.00 3.01
3077 3904 4.105377 AGCTGCAAGATGAGGGGTATAATT 59.895 41.667 1.02 0.00 34.07 1.40
3631 4480 8.740123 TCAAACAACTCCACAAAGTAGATAAA 57.260 30.769 0.00 0.00 0.00 1.40
3899 4748 1.499438 AGGACCGTATCAGGATCCTCA 59.501 52.381 12.69 0.00 37.28 3.86
3900 4749 1.889829 GGACCGTATCAGGATCCTCAG 59.110 57.143 12.69 1.24 32.41 3.35
3940 4789 3.062466 CACCTCCACTCGAGCCGA 61.062 66.667 13.61 7.12 37.27 5.54
3991 4840 1.678627 CTGACGAACATCCTCCTCGAT 59.321 52.381 0.00 0.00 36.45 3.59
4494 5361 3.692998 GCATCGACGAAATGCCAAA 57.307 47.368 11.51 0.00 42.95 3.28
4499 5366 3.536158 TCGACGAAATGCCAAAAGAAG 57.464 42.857 0.00 0.00 0.00 2.85
4511 5379 4.706476 TGCCAAAAGAAGATAATGGGTCTG 59.294 41.667 0.00 0.00 0.00 3.51
4514 5382 5.716703 CCAAAAGAAGATAATGGGTCTGGTT 59.283 40.000 0.00 0.00 0.00 3.67
4576 5448 6.263344 CCATAGCATTTCTCTTGTGAATGTG 58.737 40.000 0.00 0.00 0.00 3.21
4678 5612 6.539173 TGTCAATGGAGTGGTAAACAATAGT 58.461 36.000 0.00 0.00 0.00 2.12
4688 5622 9.607285 GAGTGGTAAACAATAGTTAAATGTGTG 57.393 33.333 0.00 0.00 36.84 3.82
4753 5687 4.388485 TGACCGCATGAAGCAATATGTAT 58.612 39.130 0.00 0.00 46.13 2.29
4754 5688 4.213906 TGACCGCATGAAGCAATATGTATG 59.786 41.667 0.00 0.00 46.13 2.39
4755 5689 4.136796 ACCGCATGAAGCAATATGTATGT 58.863 39.130 0.00 0.00 46.13 2.29
4762 5696 7.537649 GCATGAAGCAATATGTATGTTGATCAG 59.462 37.037 0.00 5.03 44.79 2.90
4779 5726 5.072055 TGATCAGTTCATTCTTGAAAGGCA 58.928 37.500 0.00 0.00 43.29 4.75
4806 5754 1.953686 CGCCCGATTCCCATGTAAAAT 59.046 47.619 0.00 0.00 0.00 1.82
4834 5782 1.965754 GCTGCGGGAGATGGAAGAGT 61.966 60.000 0.00 0.00 0.00 3.24
4857 5805 1.434696 GCAATGCGGTGCAGCTAAT 59.565 52.632 14.92 4.34 43.65 1.73
4858 5806 0.662619 GCAATGCGGTGCAGCTAATA 59.337 50.000 14.92 0.00 43.65 0.98
4864 5812 1.759994 CGGTGCAGCTAATACGAGAG 58.240 55.000 14.92 0.00 0.00 3.20
4873 5821 0.384309 TAATACGAGAGGCAGCACGG 59.616 55.000 0.00 0.00 0.00 4.94
4877 5825 2.490148 CGAGAGGCAGCACGGGATA 61.490 63.158 0.00 0.00 0.00 2.59
4881 5829 0.320247 GAGGCAGCACGGGATAGATG 60.320 60.000 0.00 0.00 0.00 2.90
4914 5862 1.737196 CGCAGCTCTCATCGAACACG 61.737 60.000 0.00 0.00 0.00 4.49
5053 6001 2.963498 GCGTGGTGATGATGATGATG 57.037 50.000 0.00 0.00 0.00 3.07
5054 6002 2.216046 GCGTGGTGATGATGATGATGT 58.784 47.619 0.00 0.00 0.00 3.06
5055 6003 2.615447 GCGTGGTGATGATGATGATGTT 59.385 45.455 0.00 0.00 0.00 2.71
5056 6004 3.303593 GCGTGGTGATGATGATGATGTTC 60.304 47.826 0.00 0.00 0.00 3.18
5057 6005 3.249320 CGTGGTGATGATGATGATGTTCC 59.751 47.826 0.00 0.00 0.00 3.62
5058 6006 4.201657 GTGGTGATGATGATGATGTTCCA 58.798 43.478 0.00 0.00 0.00 3.53
5059 6007 4.036027 GTGGTGATGATGATGATGTTCCAC 59.964 45.833 0.00 0.00 35.61 4.02
5060 6008 3.567164 GGTGATGATGATGATGTTCCACC 59.433 47.826 0.00 0.00 35.41 4.61
5061 6009 3.249320 GTGATGATGATGATGTTCCACCG 59.751 47.826 0.00 0.00 0.00 4.94
5062 6010 3.134442 TGATGATGATGATGTTCCACCGA 59.866 43.478 0.00 0.00 0.00 4.69
5063 6011 2.905075 TGATGATGATGTTCCACCGAC 58.095 47.619 0.00 0.00 0.00 4.79
5064 6012 1.860950 GATGATGATGTTCCACCGACG 59.139 52.381 0.00 0.00 0.00 5.12
5065 6013 0.739462 TGATGATGTTCCACCGACGC 60.739 55.000 0.00 0.00 0.00 5.19
5066 6014 0.739462 GATGATGTTCCACCGACGCA 60.739 55.000 0.00 0.00 0.00 5.24
5067 6015 0.740868 ATGATGTTCCACCGACGCAG 60.741 55.000 0.00 0.00 0.00 5.18
5068 6016 2.047274 ATGTTCCACCGACGCAGG 60.047 61.111 0.00 0.00 37.30 4.85
5069 6017 4.980805 TGTTCCACCGACGCAGGC 62.981 66.667 0.00 0.00 33.69 4.85
5085 6033 2.586357 GCCTTCGCCTAAGCTCCG 60.586 66.667 0.00 0.00 36.60 4.63
5086 6034 2.586357 CCTTCGCCTAAGCTCCGC 60.586 66.667 0.00 0.00 36.60 5.54
5087 6035 2.184322 CTTCGCCTAAGCTCCGCA 59.816 61.111 0.00 0.00 36.60 5.69
5088 6036 1.447838 CTTCGCCTAAGCTCCGCAA 60.448 57.895 0.00 0.00 36.60 4.85
5089 6037 1.696832 CTTCGCCTAAGCTCCGCAAC 61.697 60.000 0.00 0.00 36.60 4.17
5090 6038 3.554692 CGCCTAAGCTCCGCAACG 61.555 66.667 0.00 0.00 36.60 4.10
5102 6050 1.415374 CCGCAACGGTATTATCGAGG 58.585 55.000 2.82 0.00 42.73 4.63
5103 6051 1.269413 CCGCAACGGTATTATCGAGGT 60.269 52.381 2.82 0.00 42.73 3.85
5104 6052 1.784856 CGCAACGGTATTATCGAGGTG 59.215 52.381 2.82 0.00 0.00 4.00
5105 6053 2.797087 CGCAACGGTATTATCGAGGTGT 60.797 50.000 2.82 0.00 0.00 4.16
5106 6054 3.548616 CGCAACGGTATTATCGAGGTGTA 60.549 47.826 2.82 0.00 0.00 2.90
5107 6055 4.362279 GCAACGGTATTATCGAGGTGTAA 58.638 43.478 2.82 0.00 0.00 2.41
5108 6056 4.986659 GCAACGGTATTATCGAGGTGTAAT 59.013 41.667 2.82 0.00 0.00 1.89
5109 6057 6.151691 GCAACGGTATTATCGAGGTGTAATA 58.848 40.000 2.82 0.00 0.00 0.98
5110 6058 6.810182 GCAACGGTATTATCGAGGTGTAATAT 59.190 38.462 2.82 0.00 0.00 1.28
5111 6059 7.201410 GCAACGGTATTATCGAGGTGTAATATG 60.201 40.741 2.82 0.00 0.00 1.78
5112 6060 6.860080 ACGGTATTATCGAGGTGTAATATGG 58.140 40.000 2.82 0.00 0.00 2.74
5113 6061 6.435277 ACGGTATTATCGAGGTGTAATATGGT 59.565 38.462 2.82 0.00 0.00 3.55
5114 6062 6.750501 CGGTATTATCGAGGTGTAATATGGTG 59.249 42.308 0.00 0.00 0.00 4.17
5115 6063 7.039882 GGTATTATCGAGGTGTAATATGGTGG 58.960 42.308 0.00 0.00 0.00 4.61
5116 6064 6.928348 ATTATCGAGGTGTAATATGGTGGA 57.072 37.500 0.00 0.00 0.00 4.02
5117 6065 4.873746 ATCGAGGTGTAATATGGTGGAG 57.126 45.455 0.00 0.00 0.00 3.86
5118 6066 2.963101 TCGAGGTGTAATATGGTGGAGG 59.037 50.000 0.00 0.00 0.00 4.30
5119 6067 2.037251 CGAGGTGTAATATGGTGGAGGG 59.963 54.545 0.00 0.00 0.00 4.30
5120 6068 2.372172 GAGGTGTAATATGGTGGAGGGG 59.628 54.545 0.00 0.00 0.00 4.79
5121 6069 1.423921 GGTGTAATATGGTGGAGGGGG 59.576 57.143 0.00 0.00 0.00 5.40
5143 6091 4.814900 CGCACACGGCTAAGAGAT 57.185 55.556 0.00 0.00 41.67 2.75
5144 6092 2.582959 CGCACACGGCTAAGAGATC 58.417 57.895 0.00 0.00 41.67 2.75
5145 6093 0.101399 CGCACACGGCTAAGAGATCT 59.899 55.000 0.00 0.00 41.67 2.75
5146 6094 1.846541 GCACACGGCTAAGAGATCTC 58.153 55.000 15.29 15.29 40.25 2.75
5147 6095 1.135139 GCACACGGCTAAGAGATCTCA 59.865 52.381 24.39 4.01 40.25 3.27
5148 6096 2.417379 GCACACGGCTAAGAGATCTCAA 60.417 50.000 24.39 11.12 40.25 3.02
5149 6097 3.443037 CACACGGCTAAGAGATCTCAAG 58.557 50.000 24.39 20.10 0.00 3.02
5150 6098 2.428890 ACACGGCTAAGAGATCTCAAGG 59.571 50.000 24.39 13.61 0.00 3.61
5151 6099 2.690497 CACGGCTAAGAGATCTCAAGGA 59.310 50.000 24.39 5.71 0.00 3.36
5152 6100 3.320541 CACGGCTAAGAGATCTCAAGGAT 59.679 47.826 24.39 7.69 37.37 3.24
5165 6113 5.947228 TCTCAAGGATCAATTGTTGTGTC 57.053 39.130 5.13 0.00 0.00 3.67
5166 6114 5.624159 TCTCAAGGATCAATTGTTGTGTCT 58.376 37.500 5.13 0.00 0.00 3.41
5167 6115 5.471116 TCTCAAGGATCAATTGTTGTGTCTG 59.529 40.000 5.13 0.00 0.00 3.51
5168 6116 5.132502 TCAAGGATCAATTGTTGTGTCTGT 58.867 37.500 5.13 0.00 0.00 3.41
5169 6117 5.239306 TCAAGGATCAATTGTTGTGTCTGTC 59.761 40.000 5.13 0.00 0.00 3.51
5170 6118 3.748048 AGGATCAATTGTTGTGTCTGTCG 59.252 43.478 5.13 0.00 0.00 4.35
5171 6119 3.120199 GGATCAATTGTTGTGTCTGTCGG 60.120 47.826 5.13 0.00 0.00 4.79
5172 6120 2.217750 TCAATTGTTGTGTCTGTCGGG 58.782 47.619 5.13 0.00 0.00 5.14
5173 6121 1.946768 CAATTGTTGTGTCTGTCGGGT 59.053 47.619 0.00 0.00 0.00 5.28
5174 6122 1.593196 ATTGTTGTGTCTGTCGGGTG 58.407 50.000 0.00 0.00 0.00 4.61
5175 6123 1.092921 TTGTTGTGTCTGTCGGGTGC 61.093 55.000 0.00 0.00 0.00 5.01
5176 6124 2.110213 TTGTGTCTGTCGGGTGCC 59.890 61.111 0.00 0.00 0.00 5.01
5177 6125 3.469863 TTGTGTCTGTCGGGTGCCC 62.470 63.158 0.00 0.00 0.00 5.36
5178 6126 4.699522 GTGTCTGTCGGGTGCCCC 62.700 72.222 0.99 0.30 41.09 5.80
5192 6140 2.204090 CCCCCTGCCCCCGTATAT 60.204 66.667 0.00 0.00 0.00 0.86
5193 6141 1.081462 CCCCCTGCCCCCGTATATA 59.919 63.158 0.00 0.00 0.00 0.86
5194 6142 0.548197 CCCCCTGCCCCCGTATATAA 60.548 60.000 0.00 0.00 0.00 0.98
5195 6143 1.364269 CCCCTGCCCCCGTATATAAA 58.636 55.000 0.00 0.00 0.00 1.40
5196 6144 1.280998 CCCCTGCCCCCGTATATAAAG 59.719 57.143 0.00 0.00 0.00 1.85
5197 6145 1.280998 CCCTGCCCCCGTATATAAAGG 59.719 57.143 0.00 0.00 0.00 3.11
5198 6146 2.262637 CCTGCCCCCGTATATAAAGGA 58.737 52.381 7.00 0.00 0.00 3.36
5199 6147 2.236395 CCTGCCCCCGTATATAAAGGAG 59.764 54.545 7.00 0.00 0.00 3.69
5200 6148 1.626825 TGCCCCCGTATATAAAGGAGC 59.373 52.381 7.00 9.17 0.00 4.70
5201 6149 1.626825 GCCCCCGTATATAAAGGAGCA 59.373 52.381 7.00 0.00 0.00 4.26
5202 6150 2.039348 GCCCCCGTATATAAAGGAGCAA 59.961 50.000 7.00 0.00 0.00 3.91
5203 6151 3.868754 GCCCCCGTATATAAAGGAGCAAG 60.869 52.174 7.00 0.00 0.00 4.01
5204 6152 3.307480 CCCCCGTATATAAAGGAGCAAGG 60.307 52.174 7.00 0.86 0.00 3.61
5205 6153 3.307480 CCCCGTATATAAAGGAGCAAGGG 60.307 52.174 7.00 0.00 35.10 3.95
5206 6154 3.581332 CCCGTATATAAAGGAGCAAGGGA 59.419 47.826 7.00 0.00 37.37 4.20
5207 6155 4.322801 CCCGTATATAAAGGAGCAAGGGAG 60.323 50.000 7.00 0.00 37.37 4.30
5208 6156 4.322801 CCGTATATAAAGGAGCAAGGGAGG 60.323 50.000 0.37 0.00 0.00 4.30
5209 6157 4.527038 CGTATATAAAGGAGCAAGGGAGGA 59.473 45.833 0.00 0.00 0.00 3.71
5210 6158 5.336849 CGTATATAAAGGAGCAAGGGAGGAG 60.337 48.000 0.00 0.00 0.00 3.69
5211 6159 1.584724 TAAAGGAGCAAGGGAGGAGG 58.415 55.000 0.00 0.00 0.00 4.30
5212 6160 0.178861 AAAGGAGCAAGGGAGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
5213 6161 0.620121 AAGGAGCAAGGGAGGAGGAG 60.620 60.000 0.00 0.00 0.00 3.69
5214 6162 2.069430 GGAGCAAGGGAGGAGGAGG 61.069 68.421 0.00 0.00 0.00 4.30
5215 6163 2.690510 AGCAAGGGAGGAGGAGGC 60.691 66.667 0.00 0.00 0.00 4.70
5216 6164 3.803162 GCAAGGGAGGAGGAGGCC 61.803 72.222 0.00 0.00 0.00 5.19
5217 6165 3.474570 CAAGGGAGGAGGAGGCCG 61.475 72.222 0.00 0.00 0.00 6.13
5218 6166 4.806339 AAGGGAGGAGGAGGCCGG 62.806 72.222 0.00 0.00 0.00 6.13
5258 6206 3.698289 CAAGTGTGGAGTCCTACTAGGA 58.302 50.000 16.70 0.03 43.43 2.94
5287 6235 3.614568 TCCTAGTAGGATTCCACCTCC 57.385 52.381 15.33 0.00 40.06 4.30
5288 6236 2.179424 TCCTAGTAGGATTCCACCTCCC 59.821 54.545 15.33 0.00 40.06 4.30
5289 6237 2.090719 CCTAGTAGGATTCCACCTCCCA 60.091 54.545 11.09 0.00 37.67 4.37
5290 6238 2.897823 AGTAGGATTCCACCTCCCAT 57.102 50.000 5.29 0.00 41.00 4.00
5291 6239 4.202792 CCTAGTAGGATTCCACCTCCCATA 60.203 50.000 11.09 0.00 37.67 2.74
5292 6240 4.510303 AGTAGGATTCCACCTCCCATAT 57.490 45.455 5.29 0.00 41.00 1.78
5293 6241 4.171234 AGTAGGATTCCACCTCCCATATG 58.829 47.826 5.29 0.00 41.00 1.78
5294 6242 2.352371 AGGATTCCACCTCCCATATGG 58.648 52.381 15.41 15.41 34.98 2.74
5295 6243 2.089408 AGGATTCCACCTCCCATATGGA 60.089 50.000 24.00 8.40 42.41 3.41
5300 6248 3.531059 TCCACCTCCCATATGGAATAGG 58.469 50.000 24.00 24.59 44.57 2.57
5301 6249 3.145861 TCCACCTCCCATATGGAATAGGA 59.854 47.826 29.77 22.68 44.57 2.94
5302 6250 3.916349 CCACCTCCCATATGGAATAGGAA 59.084 47.826 29.77 8.16 44.57 3.36
5303 6251 4.353788 CCACCTCCCATATGGAATAGGAAA 59.646 45.833 29.77 7.10 44.57 3.13
5304 6252 5.162991 CCACCTCCCATATGGAATAGGAAAA 60.163 44.000 29.77 6.31 44.57 2.29
5305 6253 6.006449 CACCTCCCATATGGAATAGGAAAAG 58.994 44.000 29.77 18.32 44.57 2.27
5306 6254 5.917087 ACCTCCCATATGGAATAGGAAAAGA 59.083 40.000 29.77 14.15 44.57 2.52
5307 6255 6.044871 ACCTCCCATATGGAATAGGAAAAGAG 59.955 42.308 29.77 20.23 44.57 2.85
5308 6256 6.454223 TCCCATATGGAATAGGAAAAGAGG 57.546 41.667 24.00 0.95 41.40 3.69
5309 6257 6.157536 TCCCATATGGAATAGGAAAAGAGGA 58.842 40.000 24.00 3.48 41.40 3.71
5310 6258 6.623602 TCCCATATGGAATAGGAAAAGAGGAA 59.376 38.462 24.00 0.00 41.40 3.36
5311 6259 6.944862 CCCATATGGAATAGGAAAAGAGGAAG 59.055 42.308 24.00 0.00 30.86 3.46
5312 6260 6.944862 CCATATGGAATAGGAAAAGAGGAAGG 59.055 42.308 17.49 0.00 30.86 3.46
5313 6261 4.862641 TGGAATAGGAAAAGAGGAAGGG 57.137 45.455 0.00 0.00 0.00 3.95
5314 6262 4.444611 TGGAATAGGAAAAGAGGAAGGGA 58.555 43.478 0.00 0.00 0.00 4.20
5315 6263 4.855599 TGGAATAGGAAAAGAGGAAGGGAA 59.144 41.667 0.00 0.00 0.00 3.97
5316 6264 5.314841 TGGAATAGGAAAAGAGGAAGGGAAA 59.685 40.000 0.00 0.00 0.00 3.13
5317 6265 6.183361 TGGAATAGGAAAAGAGGAAGGGAAAA 60.183 38.462 0.00 0.00 0.00 2.29
5318 6266 6.724441 GGAATAGGAAAAGAGGAAGGGAAAAA 59.276 38.462 0.00 0.00 0.00 1.94
5319 6267 7.093727 GGAATAGGAAAAGAGGAAGGGAAAAAG 60.094 40.741 0.00 0.00 0.00 2.27
5320 6268 5.403558 AGGAAAAGAGGAAGGGAAAAAGA 57.596 39.130 0.00 0.00 0.00 2.52
5321 6269 5.389520 AGGAAAAGAGGAAGGGAAAAAGAG 58.610 41.667 0.00 0.00 0.00 2.85
5322 6270 5.134509 AGGAAAAGAGGAAGGGAAAAAGAGA 59.865 40.000 0.00 0.00 0.00 3.10
5323 6271 6.013379 GGAAAAGAGGAAGGGAAAAAGAGAT 58.987 40.000 0.00 0.00 0.00 2.75
5324 6272 6.071672 GGAAAAGAGGAAGGGAAAAAGAGATG 60.072 42.308 0.00 0.00 0.00 2.90
5325 6273 4.582973 AGAGGAAGGGAAAAAGAGATGG 57.417 45.455 0.00 0.00 0.00 3.51
5326 6274 4.179133 AGAGGAAGGGAAAAAGAGATGGA 58.821 43.478 0.00 0.00 0.00 3.41
5327 6275 4.603610 AGAGGAAGGGAAAAAGAGATGGAA 59.396 41.667 0.00 0.00 0.00 3.53
5328 6276 4.928263 AGGAAGGGAAAAAGAGATGGAAG 58.072 43.478 0.00 0.00 0.00 3.46
5329 6277 4.019858 GGAAGGGAAAAAGAGATGGAAGG 58.980 47.826 0.00 0.00 0.00 3.46
5330 6278 4.263949 GGAAGGGAAAAAGAGATGGAAGGA 60.264 45.833 0.00 0.00 0.00 3.36
5331 6279 5.325239 GAAGGGAAAAAGAGATGGAAGGAA 58.675 41.667 0.00 0.00 0.00 3.36
5332 6280 4.928263 AGGGAAAAAGAGATGGAAGGAAG 58.072 43.478 0.00 0.00 0.00 3.46
5333 6281 4.019858 GGGAAAAAGAGATGGAAGGAAGG 58.980 47.826 0.00 0.00 0.00 3.46
5334 6282 4.019858 GGAAAAAGAGATGGAAGGAAGGG 58.980 47.826 0.00 0.00 0.00 3.95
5335 6283 3.746792 AAAAGAGATGGAAGGAAGGGG 57.253 47.619 0.00 0.00 0.00 4.79
5336 6284 1.601248 AAGAGATGGAAGGAAGGGGG 58.399 55.000 0.00 0.00 0.00 5.40
5337 6285 0.990818 AGAGATGGAAGGAAGGGGGC 60.991 60.000 0.00 0.00 0.00 5.80
5338 6286 2.193248 GATGGAAGGAAGGGGGCG 59.807 66.667 0.00 0.00 0.00 6.13
5339 6287 4.129148 ATGGAAGGAAGGGGGCGC 62.129 66.667 0.00 0.00 0.00 6.53
5357 6305 4.933607 CCCCCTTCCCTAGTCCAA 57.066 61.111 0.00 0.00 0.00 3.53
5358 6306 3.359669 CCCCCTTCCCTAGTCCAAT 57.640 57.895 0.00 0.00 0.00 3.16
5359 6307 1.608425 CCCCCTTCCCTAGTCCAATT 58.392 55.000 0.00 0.00 0.00 2.32
5360 6308 1.495148 CCCCCTTCCCTAGTCCAATTC 59.505 57.143 0.00 0.00 0.00 2.17
5361 6309 1.141053 CCCCTTCCCTAGTCCAATTCG 59.859 57.143 0.00 0.00 0.00 3.34
5362 6310 1.141053 CCCTTCCCTAGTCCAATTCGG 59.859 57.143 0.00 0.00 0.00 4.30
5363 6311 2.116238 CCTTCCCTAGTCCAATTCGGA 58.884 52.381 0.00 0.00 43.61 4.55
5371 6319 2.766698 TCCAATTCGGACCAGACCA 58.233 52.632 0.00 0.00 39.64 4.02
5372 6320 1.060729 TCCAATTCGGACCAGACCAA 58.939 50.000 0.00 0.00 39.64 3.67
5373 6321 1.003118 TCCAATTCGGACCAGACCAAG 59.997 52.381 0.00 0.00 39.64 3.61
5374 6322 1.453155 CAATTCGGACCAGACCAAGG 58.547 55.000 0.00 0.00 0.00 3.61
5375 6323 0.328258 AATTCGGACCAGACCAAGGG 59.672 55.000 0.00 0.00 0.00 3.95
5376 6324 1.562672 ATTCGGACCAGACCAAGGGG 61.563 60.000 0.00 0.00 41.29 4.79
5377 6325 2.606519 CGGACCAGACCAAGGGGA 60.607 66.667 0.00 0.00 38.05 4.81
5378 6326 2.660064 CGGACCAGACCAAGGGGAG 61.660 68.421 0.00 0.00 38.05 4.30
5379 6327 2.301738 GGACCAGACCAAGGGGAGG 61.302 68.421 0.00 0.00 38.05 4.30
5380 6328 2.204151 ACCAGACCAAGGGGAGGG 60.204 66.667 0.00 0.00 38.05 4.30
5381 6329 3.017581 CCAGACCAAGGGGAGGGG 61.018 72.222 0.00 0.00 38.05 4.79
5382 6330 2.204151 CAGACCAAGGGGAGGGGT 60.204 66.667 0.00 0.00 38.05 4.95
5383 6331 2.204151 AGACCAAGGGGAGGGGTG 60.204 66.667 0.00 0.00 38.05 4.61
5384 6332 4.048470 GACCAAGGGGAGGGGTGC 62.048 72.222 0.00 0.00 38.05 5.01
5403 6351 3.984732 GCCACCCTTGAGGCCCTT 61.985 66.667 0.00 0.00 45.18 3.95
5404 6352 2.854076 CCACCCTTGAGGCCCTTT 59.146 61.111 0.00 0.00 40.58 3.11
5405 6353 1.156095 CCACCCTTGAGGCCCTTTT 59.844 57.895 0.00 0.00 40.58 2.27
5406 6354 0.900182 CCACCCTTGAGGCCCTTTTC 60.900 60.000 0.00 0.00 40.58 2.29
5407 6355 0.900182 CACCCTTGAGGCCCTTTTCC 60.900 60.000 0.00 0.00 40.58 3.13
5408 6356 1.074296 ACCCTTGAGGCCCTTTTCCT 61.074 55.000 0.00 0.00 40.58 3.36
5409 6357 0.115152 CCCTTGAGGCCCTTTTCCTT 59.885 55.000 0.00 0.00 33.24 3.36
5410 6358 1.550327 CCTTGAGGCCCTTTTCCTTC 58.450 55.000 0.00 0.00 33.24 3.46
5411 6359 1.076187 CCTTGAGGCCCTTTTCCTTCT 59.924 52.381 0.00 0.00 33.24 2.85
5412 6360 2.491640 CCTTGAGGCCCTTTTCCTTCTT 60.492 50.000 0.00 0.00 33.24 2.52
5413 6361 3.234353 CTTGAGGCCCTTTTCCTTCTTT 58.766 45.455 0.00 0.00 33.24 2.52
5414 6362 2.876581 TGAGGCCCTTTTCCTTCTTTC 58.123 47.619 0.00 0.00 33.24 2.62
5415 6363 2.171840 GAGGCCCTTTTCCTTCTTTCC 58.828 52.381 0.00 0.00 33.24 3.13
5416 6364 1.203187 AGGCCCTTTTCCTTCTTTCCC 60.203 52.381 0.00 0.00 0.00 3.97
5417 6365 0.888619 GCCCTTTTCCTTCTTTCCCG 59.111 55.000 0.00 0.00 0.00 5.14
5418 6366 1.822062 GCCCTTTTCCTTCTTTCCCGT 60.822 52.381 0.00 0.00 0.00 5.28
5419 6367 2.553685 GCCCTTTTCCTTCTTTCCCGTA 60.554 50.000 0.00 0.00 0.00 4.02
5420 6368 3.876550 GCCCTTTTCCTTCTTTCCCGTAT 60.877 47.826 0.00 0.00 0.00 3.06
5421 6369 3.694566 CCCTTTTCCTTCTTTCCCGTATG 59.305 47.826 0.00 0.00 0.00 2.39
5422 6370 3.694566 CCTTTTCCTTCTTTCCCGTATGG 59.305 47.826 0.00 0.00 0.00 2.74
5423 6371 2.413310 TTCCTTCTTTCCCGTATGGC 57.587 50.000 0.00 0.00 0.00 4.40
5424 6372 0.544697 TCCTTCTTTCCCGTATGGCC 59.455 55.000 0.00 0.00 0.00 5.36
5425 6373 0.465642 CCTTCTTTCCCGTATGGCCC 60.466 60.000 0.00 0.00 0.00 5.80
5426 6374 0.254747 CTTCTTTCCCGTATGGCCCA 59.745 55.000 0.00 0.00 0.00 5.36
5427 6375 0.699399 TTCTTTCCCGTATGGCCCAA 59.301 50.000 0.00 0.00 0.00 4.12
5428 6376 0.923358 TCTTTCCCGTATGGCCCAAT 59.077 50.000 0.00 0.00 0.00 3.16
5429 6377 2.128535 TCTTTCCCGTATGGCCCAATA 58.871 47.619 0.00 0.00 0.00 1.90
5430 6378 2.510382 TCTTTCCCGTATGGCCCAATAA 59.490 45.455 0.00 0.00 0.00 1.40
5431 6379 2.649531 TTCCCGTATGGCCCAATAAG 57.350 50.000 0.00 0.00 0.00 1.73
5432 6380 0.768622 TCCCGTATGGCCCAATAAGG 59.231 55.000 0.00 4.06 33.05 2.69
5442 6390 2.358322 CCCAATAAGGCCCAATACGT 57.642 50.000 0.00 0.00 35.39 3.57
5443 6391 3.495434 CCCAATAAGGCCCAATACGTA 57.505 47.619 0.00 0.00 35.39 3.57
5444 6392 4.028993 CCCAATAAGGCCCAATACGTAT 57.971 45.455 1.14 1.14 35.39 3.06
5445 6393 4.403734 CCCAATAAGGCCCAATACGTATT 58.596 43.478 15.07 15.07 35.39 1.89
5446 6394 4.457949 CCCAATAAGGCCCAATACGTATTC 59.542 45.833 17.82 7.32 35.39 1.75
5447 6395 4.457949 CCAATAAGGCCCAATACGTATTCC 59.542 45.833 17.82 15.59 0.00 3.01
5448 6396 2.651382 AAGGCCCAATACGTATTCCC 57.349 50.000 17.82 16.75 0.00 3.97
5449 6397 0.395312 AGGCCCAATACGTATTCCCG 59.605 55.000 17.82 7.41 0.00 5.14
5450 6398 0.107268 GGCCCAATACGTATTCCCGT 59.893 55.000 17.82 0.00 44.50 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.643551 CGGCAGTTCCAAATAGATGGT 58.356 47.619 0.00 0.00 41.46 3.55
112 113 1.046472 TCCCGTTAGGTGGCGATCAT 61.046 55.000 0.00 0.00 36.75 2.45
171 172 6.170506 ACCAAGTCGCTTCTAAACATGAATA 58.829 36.000 0.00 0.00 0.00 1.75
195 196 5.627499 TTTCCGCGAAGTTTCTACTACTA 57.373 39.130 8.23 0.00 33.17 1.82
230 231 7.649057 TGTGAGTTATCTACGTAATCCTGATG 58.351 38.462 0.00 0.00 0.00 3.07
524 534 6.437793 TCCAGTTTACAGAAAAGGAAAACCAA 59.562 34.615 0.00 0.00 31.47 3.67
538 548 5.730550 TGTAGTAGCCATTCCAGTTTACAG 58.269 41.667 0.00 0.00 0.00 2.74
540 550 5.585047 CCTTGTAGTAGCCATTCCAGTTTAC 59.415 44.000 0.00 0.00 0.00 2.01
612 624 0.549469 ACTTCGGGTCCCAAGTGTTT 59.451 50.000 19.24 1.76 31.42 2.83
653 665 2.879002 TGTATCTAGCAGCAGTGAGC 57.121 50.000 0.00 0.00 46.19 4.26
877 889 7.162082 ACCTAAGACTACAAAAGGTGAAGATG 58.838 38.462 0.00 0.00 39.10 2.90
952 964 5.898174 TGAGAAATCATGAATTGGCATCAC 58.102 37.500 0.00 0.00 0.00 3.06
1038 1050 8.157476 AGTATGTTAGCTTTCTCCTTTCTGAAA 58.843 33.333 2.44 2.44 0.00 2.69
1485 1508 5.237815 TCACATGACTAGAATGCTTTTCGT 58.762 37.500 0.00 0.00 0.00 3.85
1518 1541 8.541133 TGTTACACTTAATTCGTCATGATTGA 57.459 30.769 0.00 0.00 0.00 2.57
1752 1888 3.600388 ACCCGATGACAATTCTCTTGAC 58.400 45.455 0.00 0.00 0.00 3.18
1791 1927 6.592870 AGGCACCTTATTCCTATTAGTTCAC 58.407 40.000 0.00 0.00 0.00 3.18
1802 1938 6.998673 ACATATACAAAGAGGCACCTTATTCC 59.001 38.462 0.00 0.00 0.00 3.01
1896 2485 4.543692 CTTTCTTTGACATGTTCCTGCAG 58.456 43.478 6.78 6.78 0.00 4.41
2056 2645 3.812609 TCATTGCTGCACTTAAGAACGAA 59.187 39.130 10.09 0.00 0.00 3.85
2287 2911 6.800072 TGATACATACTGGAATACACCACA 57.200 37.500 0.00 0.00 35.91 4.17
2329 2955 1.143813 ATCACCCCATCCTCATCCAC 58.856 55.000 0.00 0.00 0.00 4.02
2673 3446 8.514594 CACTAACTCAGAAGCATTTATTTCCAA 58.485 33.333 0.00 0.00 0.00 3.53
2674 3447 7.121168 CCACTAACTCAGAAGCATTTATTTCCA 59.879 37.037 0.00 0.00 0.00 3.53
2694 3467 4.219115 TCACCAGAAATTTTGCCCACTAA 58.781 39.130 0.00 0.00 0.00 2.24
2695 3468 3.838565 TCACCAGAAATTTTGCCCACTA 58.161 40.909 0.00 0.00 0.00 2.74
2728 3519 7.986320 CAGACTCTTCACTCATATTTCTGGAAT 59.014 37.037 0.00 0.00 0.00 3.01
2869 3689 7.439655 GTCTCCAACCTATCTTTGCTACTATTG 59.560 40.741 0.00 0.00 0.00 1.90
3077 3904 3.623060 GGCGACAAGATGCTTTCTTCATA 59.377 43.478 0.00 0.00 42.98 2.15
3631 4480 3.713764 AGCTTGTTACTCTGCCCATCTAT 59.286 43.478 0.00 0.00 0.00 1.98
3940 4789 3.014538 TGGATGATGGCGTGGGGT 61.015 61.111 0.00 0.00 0.00 4.95
4036 4885 1.744368 CAGCGGCTTCATCTGCACT 60.744 57.895 0.00 0.00 40.71 4.40
4315 5164 4.694233 CAGCACCTCAGCGCCAGT 62.694 66.667 2.29 0.00 40.15 4.00
4494 5361 5.711976 CACAAACCAGACCCATTATCTTCTT 59.288 40.000 0.00 0.00 0.00 2.52
4499 5366 5.888161 AGATTCACAAACCAGACCCATTATC 59.112 40.000 0.00 0.00 0.00 1.75
4511 5379 6.346838 GCAAATGCAGTTTAGATTCACAAACC 60.347 38.462 0.00 0.00 41.59 3.27
4514 5382 4.916831 CGCAAATGCAGTTTAGATTCACAA 59.083 37.500 0.00 0.00 42.21 3.33
4678 5612 7.747155 TCCCGAAATTTCTACACACATTTAA 57.253 32.000 15.92 0.00 0.00 1.52
4688 5622 1.735571 TGCGCTTCCCGAAATTTCTAC 59.264 47.619 15.92 0.00 40.02 2.59
4690 5624 0.804989 CTGCGCTTCCCGAAATTTCT 59.195 50.000 15.92 0.00 40.02 2.52
4753 5687 6.515531 GCCTTTCAAGAATGAACTGATCAACA 60.516 38.462 0.00 0.00 45.01 3.33
4754 5688 5.860716 GCCTTTCAAGAATGAACTGATCAAC 59.139 40.000 0.00 0.00 45.01 3.18
4755 5689 5.535783 TGCCTTTCAAGAATGAACTGATCAA 59.464 36.000 0.00 0.00 45.01 2.57
4779 5726 2.818274 GGAATCGGGCGCGAAAGT 60.818 61.111 30.01 17.64 0.00 2.66
4787 5734 2.955660 TGATTTTACATGGGAATCGGGC 59.044 45.455 0.00 0.00 33.55 6.13
4791 5738 3.550842 GCGGCTGATTTTACATGGGAATC 60.551 47.826 0.00 4.50 0.00 2.52
4792 5739 2.362077 GCGGCTGATTTTACATGGGAAT 59.638 45.455 0.00 0.00 0.00 3.01
4842 5790 0.104120 TCGTATTAGCTGCACCGCAT 59.896 50.000 1.02 0.00 38.13 4.73
4857 5805 3.449227 CCCGTGCTGCCTCTCGTA 61.449 66.667 0.00 0.00 0.00 3.43
4864 5812 1.302033 CCATCTATCCCGTGCTGCC 60.302 63.158 0.00 0.00 0.00 4.85
4873 5821 2.154462 CGTGCAAATCCCCATCTATCC 58.846 52.381 0.00 0.00 0.00 2.59
4877 5825 1.754234 GCCGTGCAAATCCCCATCT 60.754 57.895 0.00 0.00 0.00 2.90
4898 5846 0.603569 AACCGTGTTCGATGAGAGCT 59.396 50.000 0.00 0.00 39.71 4.09
5034 5982 2.216046 ACATCATCATCATCACCACGC 58.784 47.619 0.00 0.00 0.00 5.34
5035 5983 3.249320 GGAACATCATCATCATCACCACG 59.751 47.826 0.00 0.00 0.00 4.94
5036 5984 4.036027 GTGGAACATCATCATCATCACCAC 59.964 45.833 0.00 0.00 44.52 4.16
5037 5985 4.201657 GTGGAACATCATCATCATCACCA 58.798 43.478 0.00 0.00 44.52 4.17
5038 5986 3.567164 GGTGGAACATCATCATCATCACC 59.433 47.826 0.00 0.00 44.52 4.02
5039 5987 3.249320 CGGTGGAACATCATCATCATCAC 59.751 47.826 0.00 0.00 41.34 3.06
5040 5988 3.134442 TCGGTGGAACATCATCATCATCA 59.866 43.478 0.00 0.00 41.34 3.07
5041 5989 3.496130 GTCGGTGGAACATCATCATCATC 59.504 47.826 0.00 0.00 41.34 2.92
5042 5990 3.470709 GTCGGTGGAACATCATCATCAT 58.529 45.455 0.00 0.00 41.34 2.45
5043 5991 2.738321 CGTCGGTGGAACATCATCATCA 60.738 50.000 0.00 0.00 41.34 3.07
5044 5992 1.860950 CGTCGGTGGAACATCATCATC 59.139 52.381 0.00 0.00 41.34 2.92
5045 5993 1.939974 CGTCGGTGGAACATCATCAT 58.060 50.000 0.00 0.00 41.34 2.45
5046 5994 0.739462 GCGTCGGTGGAACATCATCA 60.739 55.000 0.00 0.00 41.34 3.07
5047 5995 0.739462 TGCGTCGGTGGAACATCATC 60.739 55.000 0.00 0.00 41.34 2.92
5048 5996 0.740868 CTGCGTCGGTGGAACATCAT 60.741 55.000 0.00 0.00 41.34 2.45
5049 5997 1.374125 CTGCGTCGGTGGAACATCA 60.374 57.895 0.00 0.00 41.34 3.07
5050 5998 2.100631 CCTGCGTCGGTGGAACATC 61.101 63.158 0.00 0.00 44.52 3.06
5051 5999 2.047274 CCTGCGTCGGTGGAACAT 60.047 61.111 0.00 0.00 44.52 2.71
5052 6000 4.980805 GCCTGCGTCGGTGGAACA 62.981 66.667 0.00 0.00 39.98 3.18
5084 6032 1.784856 CACCTCGATAATACCGTTGCG 59.215 52.381 0.00 0.00 0.00 4.85
5085 6033 2.817901 ACACCTCGATAATACCGTTGC 58.182 47.619 0.00 0.00 0.00 4.17
5086 6034 7.274904 CCATATTACACCTCGATAATACCGTTG 59.725 40.741 0.00 0.00 0.00 4.10
5087 6035 7.039504 ACCATATTACACCTCGATAATACCGTT 60.040 37.037 0.00 0.00 0.00 4.44
5088 6036 6.435277 ACCATATTACACCTCGATAATACCGT 59.565 38.462 0.00 0.00 0.00 4.83
5089 6037 6.750501 CACCATATTACACCTCGATAATACCG 59.249 42.308 0.00 0.00 0.00 4.02
5090 6038 7.039882 CCACCATATTACACCTCGATAATACC 58.960 42.308 0.00 0.00 0.00 2.73
5091 6039 7.833786 TCCACCATATTACACCTCGATAATAC 58.166 38.462 0.00 0.00 0.00 1.89
5092 6040 7.123697 CCTCCACCATATTACACCTCGATAATA 59.876 40.741 0.00 0.00 0.00 0.98
5093 6041 6.070767 CCTCCACCATATTACACCTCGATAAT 60.071 42.308 0.00 0.00 0.00 1.28
5094 6042 5.245301 CCTCCACCATATTACACCTCGATAA 59.755 44.000 0.00 0.00 0.00 1.75
5095 6043 4.770531 CCTCCACCATATTACACCTCGATA 59.229 45.833 0.00 0.00 0.00 2.92
5096 6044 3.578716 CCTCCACCATATTACACCTCGAT 59.421 47.826 0.00 0.00 0.00 3.59
5097 6045 2.963101 CCTCCACCATATTACACCTCGA 59.037 50.000 0.00 0.00 0.00 4.04
5098 6046 2.037251 CCCTCCACCATATTACACCTCG 59.963 54.545 0.00 0.00 0.00 4.63
5099 6047 2.372172 CCCCTCCACCATATTACACCTC 59.628 54.545 0.00 0.00 0.00 3.85
5100 6048 2.418669 CCCCTCCACCATATTACACCT 58.581 52.381 0.00 0.00 0.00 4.00
5101 6049 1.423921 CCCCCTCCACCATATTACACC 59.576 57.143 0.00 0.00 0.00 4.16
5102 6050 2.951229 CCCCCTCCACCATATTACAC 57.049 55.000 0.00 0.00 0.00 2.90
5127 6075 1.135139 TGAGATCTCTTAGCCGTGTGC 59.865 52.381 22.95 0.00 41.71 4.57
5128 6076 3.443037 CTTGAGATCTCTTAGCCGTGTG 58.557 50.000 22.95 0.00 0.00 3.82
5129 6077 2.428890 CCTTGAGATCTCTTAGCCGTGT 59.571 50.000 22.95 0.00 0.00 4.49
5130 6078 2.690497 TCCTTGAGATCTCTTAGCCGTG 59.310 50.000 22.95 8.20 0.00 4.94
5131 6079 3.019799 TCCTTGAGATCTCTTAGCCGT 57.980 47.619 22.95 0.00 0.00 5.68
5132 6080 4.173036 GATCCTTGAGATCTCTTAGCCG 57.827 50.000 22.95 9.08 46.85 5.52
5142 6090 6.150641 CAGACACAACAATTGATCCTTGAGAT 59.849 38.462 13.59 0.00 38.17 2.75
5143 6091 5.471116 CAGACACAACAATTGATCCTTGAGA 59.529 40.000 13.59 0.00 0.00 3.27
5144 6092 5.240183 ACAGACACAACAATTGATCCTTGAG 59.760 40.000 13.59 7.35 0.00 3.02
5145 6093 5.132502 ACAGACACAACAATTGATCCTTGA 58.867 37.500 13.59 0.00 0.00 3.02
5146 6094 5.443185 ACAGACACAACAATTGATCCTTG 57.557 39.130 13.59 8.64 0.00 3.61
5147 6095 4.214119 CGACAGACACAACAATTGATCCTT 59.786 41.667 13.59 0.00 0.00 3.36
5148 6096 3.748048 CGACAGACACAACAATTGATCCT 59.252 43.478 13.59 0.00 0.00 3.24
5149 6097 3.120199 CCGACAGACACAACAATTGATCC 60.120 47.826 13.59 0.00 0.00 3.36
5150 6098 3.120199 CCCGACAGACACAACAATTGATC 60.120 47.826 13.59 1.75 0.00 2.92
5151 6099 2.813754 CCCGACAGACACAACAATTGAT 59.186 45.455 13.59 0.00 0.00 2.57
5152 6100 2.217750 CCCGACAGACACAACAATTGA 58.782 47.619 13.59 0.00 0.00 2.57
5153 6101 1.946768 ACCCGACAGACACAACAATTG 59.053 47.619 3.24 3.24 0.00 2.32
5154 6102 1.946768 CACCCGACAGACACAACAATT 59.053 47.619 0.00 0.00 0.00 2.32
5155 6103 1.593196 CACCCGACAGACACAACAAT 58.407 50.000 0.00 0.00 0.00 2.71
5156 6104 1.092921 GCACCCGACAGACACAACAA 61.093 55.000 0.00 0.00 0.00 2.83
5157 6105 1.522806 GCACCCGACAGACACAACA 60.523 57.895 0.00 0.00 0.00 3.33
5158 6106 2.251642 GGCACCCGACAGACACAAC 61.252 63.158 0.00 0.00 0.00 3.32
5159 6107 2.110213 GGCACCCGACAGACACAA 59.890 61.111 0.00 0.00 0.00 3.33
5175 6123 0.548197 TTATATACGGGGGCAGGGGG 60.548 60.000 0.00 0.00 0.00 5.40
5176 6124 1.280998 CTTTATATACGGGGGCAGGGG 59.719 57.143 0.00 0.00 0.00 4.79
5177 6125 1.280998 CCTTTATATACGGGGGCAGGG 59.719 57.143 0.00 0.00 0.00 4.45
5178 6126 2.236395 CTCCTTTATATACGGGGGCAGG 59.764 54.545 0.00 0.00 0.00 4.85
5179 6127 2.354805 GCTCCTTTATATACGGGGGCAG 60.355 54.545 16.12 3.07 44.12 4.85
5180 6128 1.626825 GCTCCTTTATATACGGGGGCA 59.373 52.381 16.12 0.00 44.12 5.36
5181 6129 1.626825 TGCTCCTTTATATACGGGGGC 59.373 52.381 14.80 14.80 44.87 5.80
5182 6130 3.307480 CCTTGCTCCTTTATATACGGGGG 60.307 52.174 0.56 0.00 0.00 5.40
5183 6131 3.307480 CCCTTGCTCCTTTATATACGGGG 60.307 52.174 0.00 0.00 0.00 5.73
5184 6132 3.581332 TCCCTTGCTCCTTTATATACGGG 59.419 47.826 0.00 0.00 0.00 5.28
5185 6133 4.322801 CCTCCCTTGCTCCTTTATATACGG 60.323 50.000 0.00 0.00 0.00 4.02
5186 6134 4.527038 TCCTCCCTTGCTCCTTTATATACG 59.473 45.833 0.00 0.00 0.00 3.06
5187 6135 5.046231 CCTCCTCCCTTGCTCCTTTATATAC 60.046 48.000 0.00 0.00 0.00 1.47
5188 6136 5.094387 CCTCCTCCCTTGCTCCTTTATATA 58.906 45.833 0.00 0.00 0.00 0.86
5189 6137 3.913163 CCTCCTCCCTTGCTCCTTTATAT 59.087 47.826 0.00 0.00 0.00 0.86
5190 6138 3.051341 TCCTCCTCCCTTGCTCCTTTATA 60.051 47.826 0.00 0.00 0.00 0.98
5191 6139 2.131023 CCTCCTCCCTTGCTCCTTTAT 58.869 52.381 0.00 0.00 0.00 1.40
5192 6140 1.080498 TCCTCCTCCCTTGCTCCTTTA 59.920 52.381 0.00 0.00 0.00 1.85
5193 6141 0.178861 TCCTCCTCCCTTGCTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
5194 6142 0.620121 CTCCTCCTCCCTTGCTCCTT 60.620 60.000 0.00 0.00 0.00 3.36
5195 6143 1.002792 CTCCTCCTCCCTTGCTCCT 59.997 63.158 0.00 0.00 0.00 3.69
5196 6144 2.069430 CCTCCTCCTCCCTTGCTCC 61.069 68.421 0.00 0.00 0.00 4.70
5197 6145 2.741055 GCCTCCTCCTCCCTTGCTC 61.741 68.421 0.00 0.00 0.00 4.26
5198 6146 2.690510 GCCTCCTCCTCCCTTGCT 60.691 66.667 0.00 0.00 0.00 3.91
5199 6147 3.803162 GGCCTCCTCCTCCCTTGC 61.803 72.222 0.00 0.00 0.00 4.01
5200 6148 3.474570 CGGCCTCCTCCTCCCTTG 61.475 72.222 0.00 0.00 0.00 3.61
5201 6149 4.806339 CCGGCCTCCTCCTCCCTT 62.806 72.222 0.00 0.00 0.00 3.95
5229 6177 4.947147 TCCACACTTGGTGCGCCC 62.947 66.667 15.15 6.44 46.50 6.13
5230 6178 3.357079 CTCCACACTTGGTGCGCC 61.357 66.667 10.11 10.11 46.50 6.53
5231 6179 2.591715 ACTCCACACTTGGTGCGC 60.592 61.111 0.00 0.00 46.50 6.09
5232 6180 1.961277 GGACTCCACACTTGGTGCG 60.961 63.158 0.00 0.00 46.50 5.34
5233 6181 0.685097 TAGGACTCCACACTTGGTGC 59.315 55.000 0.00 0.00 46.50 5.01
5234 6182 5.887941 CCTAGTAGGACTCCACACTTGGTG 61.888 54.167 11.09 0.00 41.99 4.17
5235 6183 2.400467 AGTAGGACTCCACACTTGGT 57.600 50.000 0.00 0.00 44.35 3.67
5236 6184 2.761208 CCTAGTAGGACTCCACACTTGG 59.239 54.545 11.09 12.70 40.40 3.61
5237 6185 3.698289 TCCTAGTAGGACTCCACACTTG 58.302 50.000 15.33 6.15 40.06 3.16
5268 6216 2.090719 TGGGAGGTGGAATCCTACTAGG 60.091 54.545 0.00 0.00 38.44 3.02
5269 6217 3.330126 TGGGAGGTGGAATCCTACTAG 57.670 52.381 0.00 0.00 38.44 2.57
5270 6218 5.342017 CATATGGGAGGTGGAATCCTACTA 58.658 45.833 0.00 0.00 38.44 1.82
5271 6219 2.897823 ATGGGAGGTGGAATCCTACT 57.102 50.000 0.00 0.00 38.44 2.57
5272 6220 3.264450 CCATATGGGAGGTGGAATCCTAC 59.736 52.174 14.52 0.00 40.01 3.18
5273 6221 3.145861 TCCATATGGGAGGTGGAATCCTA 59.854 47.826 21.78 0.00 42.15 2.94
5274 6222 2.089408 TCCATATGGGAGGTGGAATCCT 60.089 50.000 21.78 0.00 42.15 3.24
5275 6223 2.348472 TCCATATGGGAGGTGGAATCC 58.652 52.381 21.78 0.00 42.15 3.01
5285 6233 6.157536 TCCTCTTTTCCTATTCCATATGGGA 58.842 40.000 21.78 14.33 46.61 4.37
5286 6234 6.454223 TCCTCTTTTCCTATTCCATATGGG 57.546 41.667 21.78 5.27 35.41 4.00
5287 6235 6.944862 CCTTCCTCTTTTCCTATTCCATATGG 59.055 42.308 16.25 16.25 0.00 2.74
5288 6236 6.944862 CCCTTCCTCTTTTCCTATTCCATATG 59.055 42.308 0.00 0.00 0.00 1.78
5289 6237 6.857222 TCCCTTCCTCTTTTCCTATTCCATAT 59.143 38.462 0.00 0.00 0.00 1.78
5290 6238 6.217297 TCCCTTCCTCTTTTCCTATTCCATA 58.783 40.000 0.00 0.00 0.00 2.74
5291 6239 5.046522 TCCCTTCCTCTTTTCCTATTCCAT 58.953 41.667 0.00 0.00 0.00 3.41
5292 6240 4.444611 TCCCTTCCTCTTTTCCTATTCCA 58.555 43.478 0.00 0.00 0.00 3.53
5293 6241 5.452341 TTCCCTTCCTCTTTTCCTATTCC 57.548 43.478 0.00 0.00 0.00 3.01
5294 6242 7.670140 TCTTTTTCCCTTCCTCTTTTCCTATTC 59.330 37.037 0.00 0.00 0.00 1.75
5295 6243 7.535738 TCTTTTTCCCTTCCTCTTTTCCTATT 58.464 34.615 0.00 0.00 0.00 1.73
5296 6244 7.018650 TCTCTTTTTCCCTTCCTCTTTTCCTAT 59.981 37.037 0.00 0.00 0.00 2.57
5297 6245 6.331837 TCTCTTTTTCCCTTCCTCTTTTCCTA 59.668 38.462 0.00 0.00 0.00 2.94
5298 6246 5.134509 TCTCTTTTTCCCTTCCTCTTTTCCT 59.865 40.000 0.00 0.00 0.00 3.36
5299 6247 5.386060 TCTCTTTTTCCCTTCCTCTTTTCC 58.614 41.667 0.00 0.00 0.00 3.13
5300 6248 6.071672 CCATCTCTTTTTCCCTTCCTCTTTTC 60.072 42.308 0.00 0.00 0.00 2.29
5301 6249 5.777223 CCATCTCTTTTTCCCTTCCTCTTTT 59.223 40.000 0.00 0.00 0.00 2.27
5302 6250 5.075067 TCCATCTCTTTTTCCCTTCCTCTTT 59.925 40.000 0.00 0.00 0.00 2.52
5303 6251 4.603610 TCCATCTCTTTTTCCCTTCCTCTT 59.396 41.667 0.00 0.00 0.00 2.85
5304 6252 4.179133 TCCATCTCTTTTTCCCTTCCTCT 58.821 43.478 0.00 0.00 0.00 3.69
5305 6253 4.576330 TCCATCTCTTTTTCCCTTCCTC 57.424 45.455 0.00 0.00 0.00 3.71
5306 6254 4.264128 CCTTCCATCTCTTTTTCCCTTCCT 60.264 45.833 0.00 0.00 0.00 3.36
5307 6255 4.019858 CCTTCCATCTCTTTTTCCCTTCC 58.980 47.826 0.00 0.00 0.00 3.46
5308 6256 4.923415 TCCTTCCATCTCTTTTTCCCTTC 58.077 43.478 0.00 0.00 0.00 3.46
5309 6257 5.328565 CTTCCTTCCATCTCTTTTTCCCTT 58.671 41.667 0.00 0.00 0.00 3.95
5310 6258 4.264128 CCTTCCTTCCATCTCTTTTTCCCT 60.264 45.833 0.00 0.00 0.00 4.20
5311 6259 4.019858 CCTTCCTTCCATCTCTTTTTCCC 58.980 47.826 0.00 0.00 0.00 3.97
5312 6260 4.019858 CCCTTCCTTCCATCTCTTTTTCC 58.980 47.826 0.00 0.00 0.00 3.13
5313 6261 4.019858 CCCCTTCCTTCCATCTCTTTTTC 58.980 47.826 0.00 0.00 0.00 2.29
5314 6262 3.245766 CCCCCTTCCTTCCATCTCTTTTT 60.246 47.826 0.00 0.00 0.00 1.94
5315 6263 2.313041 CCCCCTTCCTTCCATCTCTTTT 59.687 50.000 0.00 0.00 0.00 2.27
5316 6264 1.925959 CCCCCTTCCTTCCATCTCTTT 59.074 52.381 0.00 0.00 0.00 2.52
5317 6265 1.601248 CCCCCTTCCTTCCATCTCTT 58.399 55.000 0.00 0.00 0.00 2.85
5318 6266 0.990818 GCCCCCTTCCTTCCATCTCT 60.991 60.000 0.00 0.00 0.00 3.10
5319 6267 1.534203 GCCCCCTTCCTTCCATCTC 59.466 63.158 0.00 0.00 0.00 2.75
5320 6268 2.378634 CGCCCCCTTCCTTCCATCT 61.379 63.158 0.00 0.00 0.00 2.90
5321 6269 2.193248 CGCCCCCTTCCTTCCATC 59.807 66.667 0.00 0.00 0.00 3.51
5322 6270 4.129148 GCGCCCCCTTCCTTCCAT 62.129 66.667 0.00 0.00 0.00 3.41
5340 6288 1.495148 GAATTGGACTAGGGAAGGGGG 59.505 57.143 0.00 0.00 0.00 5.40
5341 6289 1.141053 CGAATTGGACTAGGGAAGGGG 59.859 57.143 0.00 0.00 0.00 4.79
5342 6290 1.141053 CCGAATTGGACTAGGGAAGGG 59.859 57.143 0.00 0.00 42.00 3.95
5343 6291 2.116238 TCCGAATTGGACTAGGGAAGG 58.884 52.381 0.00 0.00 43.74 3.46
5354 6302 1.453155 CTTGGTCTGGTCCGAATTGG 58.547 55.000 0.00 0.00 40.09 3.16
5355 6303 1.453155 CCTTGGTCTGGTCCGAATTG 58.547 55.000 0.00 0.00 0.00 2.32
5356 6304 0.328258 CCCTTGGTCTGGTCCGAATT 59.672 55.000 0.00 0.00 0.00 2.17
5357 6305 1.562672 CCCCTTGGTCTGGTCCGAAT 61.563 60.000 0.00 0.00 0.00 3.34
5358 6306 2.221299 CCCCTTGGTCTGGTCCGAA 61.221 63.158 0.00 0.00 0.00 4.30
5359 6307 2.606519 CCCCTTGGTCTGGTCCGA 60.607 66.667 0.00 0.00 0.00 4.55
5360 6308 2.606519 TCCCCTTGGTCTGGTCCG 60.607 66.667 0.00 0.00 0.00 4.79
5361 6309 2.301738 CCTCCCCTTGGTCTGGTCC 61.302 68.421 0.00 0.00 0.00 4.46
5362 6310 2.301738 CCCTCCCCTTGGTCTGGTC 61.302 68.421 0.00 0.00 0.00 4.02
5363 6311 2.204151 CCCTCCCCTTGGTCTGGT 60.204 66.667 0.00 0.00 0.00 4.00
5364 6312 3.017581 CCCCTCCCCTTGGTCTGG 61.018 72.222 0.00 0.00 0.00 3.86
5365 6313 2.204151 ACCCCTCCCCTTGGTCTG 60.204 66.667 0.00 0.00 0.00 3.51
5366 6314 2.204151 CACCCCTCCCCTTGGTCT 60.204 66.667 0.00 0.00 0.00 3.85
5367 6315 4.048470 GCACCCCTCCCCTTGGTC 62.048 72.222 0.00 0.00 0.00 4.02
5387 6335 0.900182 GAAAAGGGCCTCAAGGGTGG 60.900 60.000 6.46 0.00 37.43 4.61
5388 6336 0.900182 GGAAAAGGGCCTCAAGGGTG 60.900 60.000 6.46 0.00 37.43 4.61
5389 6337 1.074296 AGGAAAAGGGCCTCAAGGGT 61.074 55.000 6.46 0.00 37.43 4.34
5390 6338 0.115152 AAGGAAAAGGGCCTCAAGGG 59.885 55.000 6.46 0.00 33.76 3.95
5391 6339 1.076187 AGAAGGAAAAGGGCCTCAAGG 59.924 52.381 6.46 0.00 33.76 3.61
5392 6340 2.593925 AGAAGGAAAAGGGCCTCAAG 57.406 50.000 6.46 0.00 33.76 3.02
5393 6341 3.230976 GAAAGAAGGAAAAGGGCCTCAA 58.769 45.455 6.46 0.00 33.76 3.02
5394 6342 2.490902 GGAAAGAAGGAAAAGGGCCTCA 60.491 50.000 6.46 0.00 33.76 3.86
5395 6343 2.171840 GGAAAGAAGGAAAAGGGCCTC 58.828 52.381 6.46 0.00 33.76 4.70
5396 6344 1.203187 GGGAAAGAAGGAAAAGGGCCT 60.203 52.381 0.00 0.00 37.35 5.19
5397 6345 1.267121 GGGAAAGAAGGAAAAGGGCC 58.733 55.000 0.00 0.00 0.00 5.80
5398 6346 0.888619 CGGGAAAGAAGGAAAAGGGC 59.111 55.000 0.00 0.00 0.00 5.19
5399 6347 2.287977 ACGGGAAAGAAGGAAAAGGG 57.712 50.000 0.00 0.00 0.00 3.95
5400 6348 3.694566 CCATACGGGAAAGAAGGAAAAGG 59.305 47.826 0.00 0.00 40.01 3.11
5401 6349 3.128764 GCCATACGGGAAAGAAGGAAAAG 59.871 47.826 0.00 0.00 40.01 2.27
5402 6350 3.086282 GCCATACGGGAAAGAAGGAAAA 58.914 45.455 0.00 0.00 40.01 2.29
5403 6351 2.619590 GGCCATACGGGAAAGAAGGAAA 60.620 50.000 0.00 0.00 40.01 3.13
5404 6352 1.064979 GGCCATACGGGAAAGAAGGAA 60.065 52.381 0.00 0.00 40.01 3.36
5405 6353 0.544697 GGCCATACGGGAAAGAAGGA 59.455 55.000 0.00 0.00 40.01 3.36
5406 6354 0.465642 GGGCCATACGGGAAAGAAGG 60.466 60.000 4.39 0.00 40.01 3.46
5407 6355 0.254747 TGGGCCATACGGGAAAGAAG 59.745 55.000 0.00 0.00 40.01 2.85
5408 6356 0.699399 TTGGGCCATACGGGAAAGAA 59.301 50.000 7.26 0.00 40.01 2.52
5409 6357 0.923358 ATTGGGCCATACGGGAAAGA 59.077 50.000 7.26 0.00 40.01 2.52
5410 6358 2.649531 TATTGGGCCATACGGGAAAG 57.350 50.000 7.26 0.00 40.01 2.62
5411 6359 2.423660 CCTTATTGGGCCATACGGGAAA 60.424 50.000 7.26 0.00 40.01 3.13
5412 6360 1.144093 CCTTATTGGGCCATACGGGAA 59.856 52.381 7.26 0.00 40.01 3.97
5413 6361 0.768622 CCTTATTGGGCCATACGGGA 59.231 55.000 7.26 0.00 40.01 5.14
5414 6362 0.893727 GCCTTATTGGGCCATACGGG 60.894 60.000 7.26 9.39 45.92 5.28
5415 6363 2.641197 GCCTTATTGGGCCATACGG 58.359 57.895 7.26 10.25 45.92 4.02
5423 6371 2.358322 ACGTATTGGGCCTTATTGGG 57.642 50.000 4.53 0.00 36.00 4.12
5424 6372 4.457949 GGAATACGTATTGGGCCTTATTGG 59.542 45.833 24.90 0.00 39.35 3.16
5425 6373 4.457949 GGGAATACGTATTGGGCCTTATTG 59.542 45.833 24.90 0.00 0.00 1.90
5426 6374 4.659115 GGGAATACGTATTGGGCCTTATT 58.341 43.478 24.90 0.00 0.00 1.40
5427 6375 3.307199 CGGGAATACGTATTGGGCCTTAT 60.307 47.826 24.90 0.00 0.00 1.73
5428 6376 2.037511 CGGGAATACGTATTGGGCCTTA 59.962 50.000 24.90 0.00 0.00 2.69
5429 6377 1.202722 CGGGAATACGTATTGGGCCTT 60.203 52.381 24.90 0.00 0.00 4.35
5430 6378 0.395312 CGGGAATACGTATTGGGCCT 59.605 55.000 24.90 0.00 0.00 5.19
5431 6379 0.107268 ACGGGAATACGTATTGGGCC 59.893 55.000 24.90 18.48 46.58 5.80
5432 6380 3.692424 ACGGGAATACGTATTGGGC 57.308 52.632 24.90 10.80 46.58 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.