Multiple sequence alignment - TraesCS5D01G301900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G301900 chr5D 100.000 2713 0 0 1 2713 398481933 398484645 0.000000e+00 5011.0
1 TraesCS5D01G301900 chr5D 83.186 1130 130 32 795 1902 398464452 398465543 0.000000e+00 979.0
2 TraesCS5D01G301900 chr5D 94.503 473 26 0 1 473 11290596 11290124 0.000000e+00 730.0
3 TraesCS5D01G301900 chr5D 75.829 1055 169 50 843 1855 398331073 398332083 8.850000e-125 457.0
4 TraesCS5D01G301900 chr5A 89.697 1553 127 19 481 2023 503492346 503493875 0.000000e+00 1951.0
5 TraesCS5D01G301900 chr5A 83.349 1069 136 25 843 1893 503485561 503486605 0.000000e+00 950.0
6 TraesCS5D01G301900 chr5A 75.261 1055 192 44 843 1855 503398609 503399636 3.210000e-119 438.0
7 TraesCS5D01G301900 chr5A 96.117 206 7 1 2508 2713 503498304 503498508 4.330000e-88 335.0
8 TraesCS5D01G301900 chr5A 82.059 340 41 13 474 801 503438857 503439188 3.440000e-69 272.0
9 TraesCS5D01G301900 chr5A 89.320 206 16 3 2031 2231 503494249 503494453 1.250000e-63 254.0
10 TraesCS5D01G301900 chr5A 78.462 325 32 21 484 792 503485162 503485464 7.720000e-41 178.0
11 TraesCS5D01G301900 chr5A 80.000 135 23 4 2321 2452 631859687 631859554 2.220000e-16 97.1
12 TraesCS5D01G301900 chr5A 81.633 98 18 0 2333 2430 599429389 599429292 6.230000e-12 82.4
13 TraesCS5D01G301900 chr5B 89.084 1594 133 26 483 2051 478430399 478431976 0.000000e+00 1941.0
14 TraesCS5D01G301900 chr5B 83.582 1072 124 29 843 1902 478425608 478426639 0.000000e+00 957.0
15 TraesCS5D01G301900 chr5B 76.395 860 147 34 843 1672 478335726 478336559 1.940000e-111 412.0
16 TraesCS5D01G301900 chr5B 92.373 118 9 0 683 800 478404416 478404533 4.650000e-38 169.0
17 TraesCS5D01G301900 chr5B 86.154 65 7 2 2334 2397 678625699 678625762 4.850000e-08 69.4
18 TraesCS5D01G301900 chr7D 95.570 474 21 0 1 474 420083507 420083980 0.000000e+00 760.0
19 TraesCS5D01G301900 chr7D 95.349 473 22 0 1 473 432957591 432957119 0.000000e+00 752.0
20 TraesCS5D01G301900 chr7D 94.595 481 25 1 1 480 18704166 18703686 0.000000e+00 743.0
21 TraesCS5D01G301900 chr7D 94.105 475 24 4 1 473 633484580 633485052 0.000000e+00 719.0
22 TraesCS5D01G301900 chr7D 95.477 199 9 0 2515 2713 403784800 403784602 4.360000e-83 318.0
23 TraesCS5D01G301900 chr7D 87.192 203 26 0 2511 2713 403096911 403096709 5.840000e-57 231.0
24 TraesCS5D01G301900 chr3D 94.503 473 25 1 1 473 417200105 417200576 0.000000e+00 728.0
25 TraesCS5D01G301900 chr3D 94.304 474 25 2 1 473 114187878 114187406 0.000000e+00 725.0
26 TraesCS5D01G301900 chr3D 85.930 199 28 0 2515 2713 433807966 433807768 2.120000e-51 213.0
27 TraesCS5D01G301900 chr3D 82.734 139 20 3 2310 2444 19935748 19935886 1.320000e-23 121.0
28 TraesCS5D01G301900 chr2B 94.080 473 28 0 1 473 166853335 166853807 0.000000e+00 719.0
29 TraesCS5D01G301900 chr1D 93.882 474 29 0 1 474 253093131 253092658 0.000000e+00 715.0
30 TraesCS5D01G301900 chr7A 96.482 199 7 0 2515 2713 462343088 462342890 2.010000e-86 329.0
31 TraesCS5D01G301900 chr7A 87.685 203 25 0 2511 2713 461807942 461807740 1.260000e-58 237.0
32 TraesCS5D01G301900 chr7B 95.477 199 9 0 2515 2713 413110416 413110218 4.360000e-83 318.0
33 TraesCS5D01G301900 chr3B 86.935 199 26 0 2515 2713 567006632 567006434 9.780000e-55 224.0
34 TraesCS5D01G301900 chr3A 85.930 199 28 0 2515 2713 572450189 572449991 2.120000e-51 213.0
35 TraesCS5D01G301900 chr3A 88.333 60 7 0 2321 2380 44717493 44717552 3.750000e-09 73.1
36 TraesCS5D01G301900 chr1A 79.070 172 28 6 2303 2469 444418666 444418834 7.940000e-21 111.0
37 TraesCS5D01G301900 chr1A 77.692 130 23 6 2343 2469 575181813 575181687 1.040000e-09 75.0
38 TraesCS5D01G301900 chr4B 79.286 140 21 6 2334 2469 39205768 39205903 1.030000e-14 91.6
39 TraesCS5D01G301900 chr4A 79.675 123 19 5 2334 2452 576614579 576614459 1.730000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G301900 chr5D 398481933 398484645 2712 False 5011.000000 5011 100.000000 1 2713 1 chr5D.!!$F3 2712
1 TraesCS5D01G301900 chr5D 398464452 398465543 1091 False 979.000000 979 83.186000 795 1902 1 chr5D.!!$F2 1107
2 TraesCS5D01G301900 chr5D 398331073 398332083 1010 False 457.000000 457 75.829000 843 1855 1 chr5D.!!$F1 1012
3 TraesCS5D01G301900 chr5A 503492346 503498508 6162 False 846.666667 1951 91.711333 481 2713 3 chr5A.!!$F4 2232
4 TraesCS5D01G301900 chr5A 503485162 503486605 1443 False 564.000000 950 80.905500 484 1893 2 chr5A.!!$F3 1409
5 TraesCS5D01G301900 chr5A 503398609 503399636 1027 False 438.000000 438 75.261000 843 1855 1 chr5A.!!$F1 1012
6 TraesCS5D01G301900 chr5B 478425608 478431976 6368 False 1449.000000 1941 86.333000 483 2051 2 chr5B.!!$F4 1568
7 TraesCS5D01G301900 chr5B 478335726 478336559 833 False 412.000000 412 76.395000 843 1672 1 chr5B.!!$F1 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 400 0.032615 TTGAGGTTGTGGCCCAGTTT 60.033 50.0 0.0 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 6400 0.034767 CAATGGCAGAAGGGAGCTGA 60.035 55.0 0.0 0.0 35.39 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.689224 CCGTTGCTGAATGCTCTTG 57.311 52.632 0.00 0.00 43.37 3.02
19 20 0.169672 CCGTTGCTGAATGCTCTTGG 59.830 55.000 0.00 0.00 43.37 3.61
20 21 0.455633 CGTTGCTGAATGCTCTTGGC 60.456 55.000 0.00 0.00 43.37 4.52
21 22 0.886563 GTTGCTGAATGCTCTTGGCT 59.113 50.000 0.00 0.00 43.37 4.75
23 24 1.171308 TGCTGAATGCTCTTGGCTTC 58.829 50.000 0.00 0.00 43.37 3.86
24 25 0.098376 GCTGAATGCTCTTGGCTTCG 59.902 55.000 0.00 0.00 42.39 3.79
28 29 1.396301 GAATGCTCTTGGCTTCGTCAG 59.604 52.381 0.00 0.00 42.39 3.51
36 37 2.047844 GCTTCGTCAGCTGCTCCA 60.048 61.111 9.47 0.00 46.27 3.86
37 38 2.099431 GCTTCGTCAGCTGCTCCAG 61.099 63.158 9.47 3.65 46.27 3.86
38 39 1.447489 CTTCGTCAGCTGCTCCAGG 60.447 63.158 9.47 0.00 31.21 4.45
39 40 2.164865 CTTCGTCAGCTGCTCCAGGT 62.165 60.000 9.47 0.00 43.33 4.00
48 49 1.537202 GCTGCTCCAGGTGTTACTTTG 59.463 52.381 0.00 0.00 31.21 2.77
50 51 2.549754 CTGCTCCAGGTGTTACTTTGTG 59.450 50.000 0.00 0.00 0.00 3.33
51 52 2.171659 TGCTCCAGGTGTTACTTTGTGA 59.828 45.455 0.00 0.00 0.00 3.58
52 53 3.181445 TGCTCCAGGTGTTACTTTGTGAT 60.181 43.478 0.00 0.00 0.00 3.06
53 54 3.189287 GCTCCAGGTGTTACTTTGTGATG 59.811 47.826 0.00 0.00 0.00 3.07
55 56 4.787551 TCCAGGTGTTACTTTGTGATGTT 58.212 39.130 0.00 0.00 0.00 2.71
56 57 4.819630 TCCAGGTGTTACTTTGTGATGTTC 59.180 41.667 0.00 0.00 0.00 3.18
65 66 4.057224 GTGATGTTCACACGGCCA 57.943 55.556 2.24 0.00 46.22 5.36
67 68 2.170260 GTGATGTTCACACGGCCACG 62.170 60.000 2.24 0.00 46.22 4.94
69 70 3.825160 ATGTTCACACGGCCACGCT 62.825 57.895 2.24 0.00 46.04 5.07
71 72 4.228567 TTCACACGGCCACGCTCA 62.229 61.111 2.24 0.00 46.04 4.26
72 73 3.529341 TTCACACGGCCACGCTCAT 62.529 57.895 2.24 0.00 46.04 2.90
73 74 3.490759 CACACGGCCACGCTCATC 61.491 66.667 2.24 0.00 46.04 2.92
74 75 3.695606 ACACGGCCACGCTCATCT 61.696 61.111 2.24 0.00 46.04 2.90
75 76 2.348104 ACACGGCCACGCTCATCTA 61.348 57.895 2.24 0.00 46.04 1.98
76 77 1.878522 CACGGCCACGCTCATCTAC 60.879 63.158 2.24 0.00 46.04 2.59
77 78 2.052690 ACGGCCACGCTCATCTACT 61.053 57.895 2.24 0.00 46.04 2.57
78 79 1.589993 CGGCCACGCTCATCTACTG 60.590 63.158 2.24 0.00 0.00 2.74
79 80 1.517832 GGCCACGCTCATCTACTGT 59.482 57.895 0.00 0.00 0.00 3.55
80 81 0.807667 GGCCACGCTCATCTACTGTG 60.808 60.000 0.00 0.00 0.00 3.66
82 83 1.914634 CCACGCTCATCTACTGTGAC 58.085 55.000 0.00 0.00 32.39 3.67
83 84 1.202348 CCACGCTCATCTACTGTGACA 59.798 52.381 0.00 0.00 32.39 3.58
84 85 2.352715 CCACGCTCATCTACTGTGACAA 60.353 50.000 0.00 0.00 32.39 3.18
85 86 2.663602 CACGCTCATCTACTGTGACAAC 59.336 50.000 0.00 0.00 32.39 3.32
86 87 1.914051 CGCTCATCTACTGTGACAACG 59.086 52.381 0.00 0.00 0.00 4.10
87 88 2.668556 CGCTCATCTACTGTGACAACGT 60.669 50.000 0.00 0.00 0.00 3.99
88 89 2.917971 GCTCATCTACTGTGACAACGTC 59.082 50.000 0.00 0.00 0.00 4.34
90 91 4.407818 CTCATCTACTGTGACAACGTCTC 58.592 47.826 0.00 0.00 33.15 3.36
91 92 3.190744 TCATCTACTGTGACAACGTCTCC 59.809 47.826 0.00 0.00 33.15 3.71
92 93 1.534163 TCTACTGTGACAACGTCTCCG 59.466 52.381 0.00 0.00 40.83 4.63
93 94 0.039798 TACTGTGACAACGTCTCCGC 60.040 55.000 0.00 0.00 37.70 5.54
94 95 2.022129 CTGTGACAACGTCTCCGCC 61.022 63.158 0.00 0.00 37.70 6.13
95 96 3.103911 GTGACAACGTCTCCGCCG 61.104 66.667 0.00 0.00 37.70 6.46
96 97 3.598715 TGACAACGTCTCCGCCGT 61.599 61.111 0.00 0.00 40.92 5.68
97 98 3.103911 GACAACGTCTCCGCCGTG 61.104 66.667 0.00 0.00 38.77 4.94
98 99 3.836176 GACAACGTCTCCGCCGTGT 62.836 63.158 0.00 0.00 38.77 4.49
100 101 2.084681 CAACGTCTCCGCCGTGTAC 61.085 63.158 0.00 0.00 38.77 2.90
102 103 3.437795 CGTCTCCGCCGTGTACCT 61.438 66.667 0.00 0.00 0.00 3.08
103 104 2.488820 GTCTCCGCCGTGTACCTC 59.511 66.667 0.00 0.00 0.00 3.85
105 106 1.748122 TCTCCGCCGTGTACCTCTC 60.748 63.158 0.00 0.00 0.00 3.20
107 108 4.189188 CCGCCGTGTACCTCTCCG 62.189 72.222 0.00 0.00 0.00 4.63
108 109 4.849329 CGCCGTGTACCTCTCCGC 62.849 72.222 0.00 0.00 0.00 5.54
109 110 4.509737 GCCGTGTACCTCTCCGCC 62.510 72.222 0.00 0.00 0.00 6.13
110 111 3.066190 CCGTGTACCTCTCCGCCA 61.066 66.667 0.00 0.00 0.00 5.69
111 112 2.642254 CCGTGTACCTCTCCGCCAA 61.642 63.158 0.00 0.00 0.00 4.52
112 113 1.445582 CGTGTACCTCTCCGCCAAC 60.446 63.158 0.00 0.00 0.00 3.77
114 115 2.288025 TGTACCTCTCCGCCAACCC 61.288 63.158 0.00 0.00 0.00 4.11
115 116 3.072468 TACCTCTCCGCCAACCCG 61.072 66.667 0.00 0.00 0.00 5.28
124 125 4.360405 GCCAACCCGGTCCACCAT 62.360 66.667 0.00 0.00 36.97 3.55
126 127 2.435938 CAACCCGGTCCACCATCG 60.436 66.667 0.00 0.00 35.14 3.84
128 129 2.951101 AACCCGGTCCACCATCGTC 61.951 63.158 0.00 0.00 35.14 4.20
129 130 4.508128 CCCGGTCCACCATCGTCG 62.508 72.222 0.00 0.00 35.14 5.12
130 131 3.445687 CCGGTCCACCATCGTCGA 61.446 66.667 0.00 0.00 35.14 4.20
131 132 2.569657 CGGTCCACCATCGTCGAA 59.430 61.111 0.00 0.00 35.14 3.71
132 133 1.804326 CGGTCCACCATCGTCGAAC 60.804 63.158 0.00 0.00 35.14 3.95
145 146 3.473864 CGTCGAACGAAGCATATTGAG 57.526 47.619 0.00 0.00 46.05 3.02
146 147 2.346741 CGTCGAACGAAGCATATTGAGC 60.347 50.000 0.00 0.00 46.05 4.26
147 148 2.860735 GTCGAACGAAGCATATTGAGCT 59.139 45.455 0.00 0.00 45.97 4.09
148 149 3.060873 GTCGAACGAAGCATATTGAGCTC 60.061 47.826 6.82 6.82 42.53 4.09
149 150 2.097685 CGAACGAAGCATATTGAGCTCG 60.098 50.000 9.64 0.00 42.53 5.03
150 151 2.871182 ACGAAGCATATTGAGCTCGA 57.129 45.000 6.01 6.01 42.53 4.04
151 152 2.464865 ACGAAGCATATTGAGCTCGAC 58.535 47.619 5.59 0.00 42.53 4.20
152 153 2.159240 ACGAAGCATATTGAGCTCGACA 60.159 45.455 5.59 0.00 42.53 4.35
153 154 3.055591 CGAAGCATATTGAGCTCGACAT 58.944 45.455 5.59 0.00 42.53 3.06
155 156 4.089208 CGAAGCATATTGAGCTCGACATAC 59.911 45.833 5.59 0.00 42.53 2.39
156 157 4.590850 AGCATATTGAGCTCGACATACA 57.409 40.909 5.59 0.00 38.01 2.29
157 158 4.302455 AGCATATTGAGCTCGACATACAC 58.698 43.478 5.59 0.50 38.01 2.90
158 159 4.038522 AGCATATTGAGCTCGACATACACT 59.961 41.667 5.59 2.66 38.01 3.55
159 160 4.747108 GCATATTGAGCTCGACATACACTT 59.253 41.667 5.59 0.00 0.00 3.16
160 161 5.235186 GCATATTGAGCTCGACATACACTTT 59.765 40.000 5.59 0.00 0.00 2.66
161 162 6.643845 CATATTGAGCTCGACATACACTTTG 58.356 40.000 5.59 0.00 0.00 2.77
162 163 3.660501 TGAGCTCGACATACACTTTGT 57.339 42.857 9.64 0.00 0.00 2.83
165 166 2.987149 AGCTCGACATACACTTTGTTCG 59.013 45.455 0.00 0.00 0.00 3.95
166 167 2.729882 GCTCGACATACACTTTGTTCGT 59.270 45.455 0.00 0.00 0.00 3.85
169 170 3.978855 TCGACATACACTTTGTTCGTGAG 59.021 43.478 0.00 0.00 36.29 3.51
170 171 3.421826 CGACATACACTTTGTTCGTGAGC 60.422 47.826 0.00 0.00 36.29 4.26
172 173 3.494626 ACATACACTTTGTTCGTGAGCAG 59.505 43.478 0.00 0.00 36.29 4.24
174 175 1.299541 CACTTTGTTCGTGAGCAGGT 58.700 50.000 0.00 0.00 34.35 4.00
175 176 1.003545 CACTTTGTTCGTGAGCAGGTG 60.004 52.381 7.20 7.20 34.35 4.00
176 177 0.588252 CTTTGTTCGTGAGCAGGTGG 59.412 55.000 0.00 0.00 0.00 4.61
177 178 1.444119 TTTGTTCGTGAGCAGGTGGC 61.444 55.000 0.00 0.00 45.30 5.01
202 203 4.477975 CGCGTCCGAGTCCTCCAC 62.478 72.222 0.00 0.00 36.29 4.02
203 204 4.477975 GCGTCCGAGTCCTCCACG 62.478 72.222 8.40 8.40 36.21 4.94
204 205 3.054503 CGTCCGAGTCCTCCACGT 61.055 66.667 5.64 0.00 31.48 4.49
205 206 2.876219 GTCCGAGTCCTCCACGTC 59.124 66.667 0.00 0.00 0.00 4.34
207 208 3.450115 CCGAGTCCTCCACGTCCC 61.450 72.222 0.00 0.00 0.00 4.46
208 209 3.812019 CGAGTCCTCCACGTCCCG 61.812 72.222 0.00 0.00 0.00 5.14
209 210 2.360852 GAGTCCTCCACGTCCCGA 60.361 66.667 0.00 0.00 0.00 5.14
210 211 2.675772 AGTCCTCCACGTCCCGAC 60.676 66.667 0.00 0.00 0.00 4.79
230 231 2.780643 CGCAGCAGTTCACCGATG 59.219 61.111 0.00 0.00 0.00 3.84
231 232 2.029288 CGCAGCAGTTCACCGATGT 61.029 57.895 0.00 0.00 0.00 3.06
233 234 0.950555 GCAGCAGTTCACCGATGTCA 60.951 55.000 0.00 0.00 0.00 3.58
236 237 1.276138 AGCAGTTCACCGATGTCATGA 59.724 47.619 0.00 0.00 0.00 3.07
237 238 1.394917 GCAGTTCACCGATGTCATGAC 59.605 52.381 19.27 19.27 0.00 3.06
238 239 2.687370 CAGTTCACCGATGTCATGACA 58.313 47.619 29.67 29.67 46.44 3.58
239 240 3.066380 CAGTTCACCGATGTCATGACAA 58.934 45.455 31.00 15.50 45.41 3.18
243 244 3.073678 TCACCGATGTCATGACAAAAGG 58.926 45.455 31.00 30.34 45.41 3.11
244 245 3.073678 CACCGATGTCATGACAAAAGGA 58.926 45.455 34.44 16.18 45.41 3.36
245 246 3.074412 ACCGATGTCATGACAAAAGGAC 58.926 45.455 34.44 21.08 45.41 3.85
247 248 3.125829 CCGATGTCATGACAAAAGGACTG 59.874 47.826 31.00 14.21 45.41 3.51
248 249 3.425359 CGATGTCATGACAAAAGGACTGC 60.425 47.826 31.00 11.40 45.41 4.40
249 250 2.229792 TGTCATGACAAAAGGACTGCC 58.770 47.619 26.02 0.00 38.56 4.85
250 251 2.158623 TGTCATGACAAAAGGACTGCCT 60.159 45.455 26.02 0.00 42.03 4.75
253 254 3.327757 TCATGACAAAAGGACTGCCTACT 59.672 43.478 0.00 0.00 46.28 2.57
254 255 3.857157 TGACAAAAGGACTGCCTACTT 57.143 42.857 0.00 0.00 46.28 2.24
256 257 3.391296 TGACAAAAGGACTGCCTACTTCT 59.609 43.478 0.00 0.00 46.28 2.85
257 258 4.141482 TGACAAAAGGACTGCCTACTTCTT 60.141 41.667 0.00 0.00 46.28 2.52
261 262 4.984146 AAGGACTGCCTACTTCTTCTTT 57.016 40.909 0.00 0.00 46.28 2.52
263 264 3.056465 AGGACTGCCTACTTCTTCTTTCG 60.056 47.826 0.00 0.00 44.74 3.46
265 266 4.170256 GACTGCCTACTTCTTCTTTCGAG 58.830 47.826 0.00 0.00 0.00 4.04
266 267 3.056465 ACTGCCTACTTCTTCTTTCGAGG 60.056 47.826 0.00 0.00 0.00 4.63
267 268 3.162666 TGCCTACTTCTTCTTTCGAGGA 58.837 45.455 0.00 0.00 0.00 3.71
268 269 3.193691 TGCCTACTTCTTCTTTCGAGGAG 59.806 47.826 0.00 0.00 0.00 3.69
271 272 5.404096 CCTACTTCTTCTTTCGAGGAGTTC 58.596 45.833 0.00 0.00 0.00 3.01
272 273 4.939052 ACTTCTTCTTTCGAGGAGTTCA 57.061 40.909 0.00 0.00 0.00 3.18
273 274 4.877282 ACTTCTTCTTTCGAGGAGTTCAG 58.123 43.478 0.00 0.00 0.00 3.02
274 275 3.944055 TCTTCTTTCGAGGAGTTCAGG 57.056 47.619 0.00 0.00 0.00 3.86
276 277 3.256136 TCTTCTTTCGAGGAGTTCAGGTC 59.744 47.826 0.00 0.00 0.00 3.85
278 279 1.618837 CTTTCGAGGAGTTCAGGTCCA 59.381 52.381 0.00 0.00 36.43 4.02
279 280 1.257743 TTCGAGGAGTTCAGGTCCAG 58.742 55.000 0.00 0.00 36.43 3.86
280 281 0.112606 TCGAGGAGTTCAGGTCCAGT 59.887 55.000 0.00 0.00 36.43 4.00
281 282 0.528470 CGAGGAGTTCAGGTCCAGTC 59.472 60.000 0.00 0.00 36.43 3.51
282 283 1.888826 CGAGGAGTTCAGGTCCAGTCT 60.889 57.143 0.00 0.00 36.43 3.24
283 284 2.252714 GAGGAGTTCAGGTCCAGTCTT 58.747 52.381 0.00 0.00 36.43 3.01
284 285 2.635427 GAGGAGTTCAGGTCCAGTCTTT 59.365 50.000 0.00 0.00 36.43 2.52
287 288 0.868406 GTTCAGGTCCAGTCTTTGCG 59.132 55.000 0.00 0.00 0.00 4.85
288 289 0.468226 TTCAGGTCCAGTCTTTGCGT 59.532 50.000 0.00 0.00 0.00 5.24
289 290 0.033504 TCAGGTCCAGTCTTTGCGTC 59.966 55.000 0.00 0.00 0.00 5.19
290 291 0.034059 CAGGTCCAGTCTTTGCGTCT 59.966 55.000 0.00 0.00 0.00 4.18
292 293 0.670854 GGTCCAGTCTTTGCGTCTCC 60.671 60.000 0.00 0.00 0.00 3.71
293 294 1.009389 GTCCAGTCTTTGCGTCTCCG 61.009 60.000 0.00 0.00 37.07 4.63
294 295 1.738099 CCAGTCTTTGCGTCTCCGG 60.738 63.158 0.00 0.00 33.68 5.14
296 297 3.479269 GTCTTTGCGTCTCCGGCG 61.479 66.667 0.00 0.00 33.68 6.46
297 298 3.676605 TCTTTGCGTCTCCGGCGA 61.677 61.111 9.30 0.00 33.68 5.54
298 299 3.479269 CTTTGCGTCTCCGGCGAC 61.479 66.667 14.74 14.74 33.68 5.19
331 332 2.815158 GGGGGTGTTGAACATATGGTT 58.185 47.619 7.80 0.00 44.10 3.67
332 333 3.169908 GGGGGTGTTGAACATATGGTTT 58.830 45.455 7.80 0.00 40.63 3.27
334 335 3.576550 GGGGTGTTGAACATATGGTTTGT 59.423 43.478 7.80 0.00 40.63 2.83
335 336 4.555262 GGGTGTTGAACATATGGTTTGTG 58.445 43.478 7.80 0.00 40.63 3.33
337 338 4.500545 GGTGTTGAACATATGGTTTGTGCA 60.501 41.667 7.80 0.00 40.63 4.57
338 339 5.229423 GTGTTGAACATATGGTTTGTGCAT 58.771 37.500 7.80 0.00 40.63 3.96
340 341 5.221402 TGTTGAACATATGGTTTGTGCATGT 60.221 36.000 7.80 0.00 40.63 3.21
342 343 6.772360 TGAACATATGGTTTGTGCATGTAT 57.228 33.333 7.80 0.00 40.63 2.29
344 345 8.462589 TGAACATATGGTTTGTGCATGTATAT 57.537 30.769 7.80 0.00 40.63 0.86
345 346 8.911965 TGAACATATGGTTTGTGCATGTATATT 58.088 29.630 7.80 0.00 40.63 1.28
347 348 8.236585 ACATATGGTTTGTGCATGTATATTGT 57.763 30.769 7.80 0.00 0.00 2.71
348 349 9.348476 ACATATGGTTTGTGCATGTATATTGTA 57.652 29.630 7.80 0.00 0.00 2.41
352 353 8.972458 TGGTTTGTGCATGTATATTGTATAGT 57.028 30.769 0.00 0.00 0.00 2.12
354 355 8.504005 GGTTTGTGCATGTATATTGTATAGTCC 58.496 37.037 0.00 0.00 0.00 3.85
355 356 7.883229 TTGTGCATGTATATTGTATAGTCCG 57.117 36.000 0.00 0.00 0.00 4.79
356 357 6.394809 TGTGCATGTATATTGTATAGTCCGG 58.605 40.000 0.00 0.00 0.00 5.14
357 358 5.291128 GTGCATGTATATTGTATAGTCCGGC 59.709 44.000 0.00 0.00 0.00 6.13
358 359 4.809426 GCATGTATATTGTATAGTCCGGCC 59.191 45.833 0.00 0.00 0.00 6.13
359 360 5.357257 CATGTATATTGTATAGTCCGGCCC 58.643 45.833 0.00 0.00 0.00 5.80
360 361 4.418359 TGTATATTGTATAGTCCGGCCCA 58.582 43.478 0.00 0.00 0.00 5.36
361 362 3.975168 ATATTGTATAGTCCGGCCCAC 57.025 47.619 0.00 0.00 0.00 4.61
362 363 0.763035 ATTGTATAGTCCGGCCCACC 59.237 55.000 0.00 0.00 0.00 4.61
363 364 0.325860 TTGTATAGTCCGGCCCACCT 60.326 55.000 0.00 0.00 0.00 4.00
364 365 0.757935 TGTATAGTCCGGCCCACCTC 60.758 60.000 0.00 0.00 0.00 3.85
365 366 1.152398 TATAGTCCGGCCCACCTCC 60.152 63.158 0.00 0.00 0.00 4.30
366 367 1.661990 TATAGTCCGGCCCACCTCCT 61.662 60.000 0.00 0.00 0.00 3.69
368 369 2.294170 TAGTCCGGCCCACCTCCTAG 62.294 65.000 0.00 0.00 0.00 3.02
369 370 3.680196 TCCGGCCCACCTCCTAGT 61.680 66.667 0.00 0.00 0.00 2.57
370 371 3.155167 CCGGCCCACCTCCTAGTC 61.155 72.222 0.00 0.00 0.00 2.59
371 372 2.363795 CGGCCCACCTCCTAGTCA 60.364 66.667 0.00 0.00 0.00 3.41
372 373 1.762460 CGGCCCACCTCCTAGTCAT 60.762 63.158 0.00 0.00 0.00 3.06
373 374 1.338136 CGGCCCACCTCCTAGTCATT 61.338 60.000 0.00 0.00 0.00 2.57
374 375 0.181350 GGCCCACCTCCTAGTCATTG 59.819 60.000 0.00 0.00 0.00 2.82
375 376 0.912486 GCCCACCTCCTAGTCATTGT 59.088 55.000 0.00 0.00 0.00 2.71
377 378 2.706190 GCCCACCTCCTAGTCATTGTAT 59.294 50.000 0.00 0.00 0.00 2.29
378 379 3.901844 GCCCACCTCCTAGTCATTGTATA 59.098 47.826 0.00 0.00 0.00 1.47
379 380 4.021016 GCCCACCTCCTAGTCATTGTATAG 60.021 50.000 0.00 0.00 0.00 1.31
381 382 5.602978 CCCACCTCCTAGTCATTGTATAGTT 59.397 44.000 0.00 0.00 0.00 2.24
382 383 6.463049 CCCACCTCCTAGTCATTGTATAGTTG 60.463 46.154 0.00 0.00 0.00 3.16
383 384 6.323996 CCACCTCCTAGTCATTGTATAGTTGA 59.676 42.308 0.00 0.00 0.00 3.18
384 385 7.429633 CACCTCCTAGTCATTGTATAGTTGAG 58.570 42.308 0.00 0.00 0.00 3.02
385 386 6.551601 ACCTCCTAGTCATTGTATAGTTGAGG 59.448 42.308 0.00 0.00 40.19 3.86
387 388 7.070074 CCTCCTAGTCATTGTATAGTTGAGGTT 59.930 40.741 0.00 0.00 31.94 3.50
388 389 7.782049 TCCTAGTCATTGTATAGTTGAGGTTG 58.218 38.462 0.00 0.00 0.00 3.77
390 391 7.492669 CCTAGTCATTGTATAGTTGAGGTTGTG 59.507 40.741 0.00 0.00 0.00 3.33
394 395 2.026636 TGTATAGTTGAGGTTGTGGCCC 60.027 50.000 0.00 0.00 0.00 5.80
395 396 1.072266 ATAGTTGAGGTTGTGGCCCA 58.928 50.000 0.00 0.00 0.00 5.36
397 398 1.152756 GTTGAGGTTGTGGCCCAGT 60.153 57.895 0.00 0.00 0.00 4.00
399 400 0.032615 TTGAGGTTGTGGCCCAGTTT 60.033 50.000 0.00 0.00 0.00 2.66
400 401 0.754957 TGAGGTTGTGGCCCAGTTTG 60.755 55.000 0.00 0.00 0.00 2.93
401 402 0.755327 GAGGTTGTGGCCCAGTTTGT 60.755 55.000 0.00 0.00 0.00 2.83
402 403 0.553819 AGGTTGTGGCCCAGTTTGTA 59.446 50.000 0.00 0.00 0.00 2.41
404 405 1.687563 GTTGTGGCCCAGTTTGTACT 58.312 50.000 0.00 0.00 34.00 2.73
407 408 0.109723 GTGGCCCAGTTTGTACTCCA 59.890 55.000 0.00 0.00 30.26 3.86
410 411 2.849943 TGGCCCAGTTTGTACTCCATAT 59.150 45.455 0.00 0.00 30.26 1.78
411 412 4.041464 TGGCCCAGTTTGTACTCCATATA 58.959 43.478 0.00 0.00 30.26 0.86
412 413 4.663120 TGGCCCAGTTTGTACTCCATATAT 59.337 41.667 0.00 0.00 30.26 0.86
413 414 5.847265 TGGCCCAGTTTGTACTCCATATATA 59.153 40.000 0.00 0.00 30.26 0.86
414 415 6.171213 GGCCCAGTTTGTACTCCATATATAC 58.829 44.000 0.00 0.00 30.26 1.47
416 417 6.517864 GCCCAGTTTGTACTCCATATATACGT 60.518 42.308 0.00 0.00 30.26 3.57
417 418 6.866770 CCCAGTTTGTACTCCATATATACGTG 59.133 42.308 0.00 0.00 30.26 4.49
418 419 6.365247 CCAGTTTGTACTCCATATATACGTGC 59.635 42.308 0.00 0.00 30.26 5.34
419 420 6.087687 CAGTTTGTACTCCATATATACGTGCG 59.912 42.308 0.00 0.00 30.26 5.34
420 421 4.087510 TGTACTCCATATATACGTGCGC 57.912 45.455 0.00 0.00 0.00 6.09
421 422 3.754850 TGTACTCCATATATACGTGCGCT 59.245 43.478 9.73 0.00 0.00 5.92
422 423 4.937015 TGTACTCCATATATACGTGCGCTA 59.063 41.667 9.73 0.00 0.00 4.26
423 424 5.587443 TGTACTCCATATATACGTGCGCTAT 59.413 40.000 9.73 0.17 0.00 2.97
434 435 3.717899 GCGCTATGCACCGATCAA 58.282 55.556 0.00 0.00 45.45 2.57
436 437 1.428448 GCGCTATGCACCGATCAATA 58.572 50.000 0.00 0.00 45.45 1.90
437 438 2.002586 GCGCTATGCACCGATCAATAT 58.997 47.619 0.00 0.00 45.45 1.28
438 439 3.186909 GCGCTATGCACCGATCAATATA 58.813 45.455 0.00 0.00 45.45 0.86
439 440 3.804325 GCGCTATGCACCGATCAATATAT 59.196 43.478 0.00 0.00 45.45 0.86
440 441 4.084849 GCGCTATGCACCGATCAATATATC 60.085 45.833 0.00 0.00 45.45 1.63
442 443 5.043903 GCTATGCACCGATCAATATATCGT 58.956 41.667 7.03 0.00 45.72 3.73
443 444 5.051441 GCTATGCACCGATCAATATATCGTG 60.051 44.000 7.03 6.61 45.72 4.35
444 445 4.513198 TGCACCGATCAATATATCGTGA 57.487 40.909 7.03 0.00 45.72 4.35
445 446 4.877282 TGCACCGATCAATATATCGTGAA 58.123 39.130 7.03 0.00 45.72 3.18
446 447 4.923281 TGCACCGATCAATATATCGTGAAG 59.077 41.667 7.03 0.00 45.72 3.02
447 448 4.923871 GCACCGATCAATATATCGTGAAGT 59.076 41.667 7.03 0.00 45.72 3.01
448 449 6.090783 GCACCGATCAATATATCGTGAAGTA 58.909 40.000 7.03 0.00 45.72 2.24
449 450 6.752351 GCACCGATCAATATATCGTGAAGTAT 59.248 38.462 7.03 0.00 45.72 2.12
450 451 7.275779 GCACCGATCAATATATCGTGAAGTATT 59.724 37.037 7.03 0.00 45.72 1.89
451 452 8.587111 CACCGATCAATATATCGTGAAGTATTG 58.413 37.037 7.03 9.52 45.72 1.90
452 453 7.275779 ACCGATCAATATATCGTGAAGTATTGC 59.724 37.037 7.03 0.00 45.72 3.56
455 456 8.846943 ATCAATATATCGTGAAGTATTGCCAA 57.153 30.769 10.39 0.00 35.53 4.52
458 459 9.169468 CAATATATCGTGAAGTATTGCCAAAAC 57.831 33.333 0.00 0.00 30.57 2.43
459 460 8.677148 ATATATCGTGAAGTATTGCCAAAACT 57.323 30.769 0.00 0.00 0.00 2.66
460 461 4.742438 TCGTGAAGTATTGCCAAAACTC 57.258 40.909 0.00 0.00 0.00 3.01
461 462 4.385825 TCGTGAAGTATTGCCAAAACTCT 58.614 39.130 0.00 0.00 0.00 3.24
462 463 4.451096 TCGTGAAGTATTGCCAAAACTCTC 59.549 41.667 0.00 0.00 0.00 3.20
464 465 4.213482 GTGAAGTATTGCCAAAACTCTCGT 59.787 41.667 0.00 0.00 0.00 4.18
465 466 4.819630 TGAAGTATTGCCAAAACTCTCGTT 59.180 37.500 0.00 0.00 34.03 3.85
467 468 5.358298 AGTATTGCCAAAACTCTCGTTTC 57.642 39.130 0.00 0.00 42.28 2.78
468 469 3.643159 ATTGCCAAAACTCTCGTTTCC 57.357 42.857 0.00 0.00 42.28 3.13
469 470 2.045561 TGCCAAAACTCTCGTTTCCA 57.954 45.000 0.00 0.00 42.28 3.53
471 472 2.098443 TGCCAAAACTCTCGTTTCCAAC 59.902 45.455 0.00 0.00 42.28 3.77
475 476 4.495844 CCAAAACTCTCGTTTCCAACAGAC 60.496 45.833 0.00 0.00 42.28 3.51
476 477 3.821421 AACTCTCGTTTCCAACAGACT 57.179 42.857 0.00 0.00 0.00 3.24
478 479 1.795286 CTCTCGTTTCCAACAGACTGC 59.205 52.381 1.25 0.00 0.00 4.40
480 481 2.146342 CTCGTTTCCAACAGACTGCAT 58.854 47.619 1.25 0.00 0.00 3.96
481 482 3.006430 TCTCGTTTCCAACAGACTGCATA 59.994 43.478 1.25 0.00 0.00 3.14
482 483 3.734463 TCGTTTCCAACAGACTGCATAA 58.266 40.909 1.25 0.00 0.00 1.90
483 484 3.745975 TCGTTTCCAACAGACTGCATAAG 59.254 43.478 1.25 0.00 0.00 1.73
484 485 3.745975 CGTTTCCAACAGACTGCATAAGA 59.254 43.478 1.25 0.00 0.00 2.10
486 487 5.277779 CGTTTCCAACAGACTGCATAAGAAA 60.278 40.000 1.25 2.91 0.00 2.52
519 4832 3.956744 TCCATCGATCTATCACGGAGAT 58.043 45.455 0.00 0.00 40.86 2.75
539 4861 7.221067 CGGAGATTTGCTTCTACTTTGTACTAG 59.779 40.741 0.00 0.00 0.00 2.57
598 4937 2.238084 AGCAGATCTCAGGTACCACA 57.762 50.000 15.94 0.00 0.00 4.17
628 4967 1.866853 GCAGCGGAGAAAACAAGGGG 61.867 60.000 0.00 0.00 0.00 4.79
647 4987 1.588861 GGAAAACAGAGACGCGCTATC 59.411 52.381 5.73 2.62 0.00 2.08
668 5008 2.487762 CGCTGCAACCTTTGGAATTCTA 59.512 45.455 5.23 0.00 0.00 2.10
669 5009 3.129287 CGCTGCAACCTTTGGAATTCTAT 59.871 43.478 5.23 0.00 0.00 1.98
704 5045 2.033194 CGGAGACCGGCAAGGAAAC 61.033 63.158 0.00 0.00 44.15 2.78
783 5124 7.065204 GCTTTACCACTTGATTAAAGGAGAGAG 59.935 40.741 10.16 0.00 40.51 3.20
801 5176 1.076485 GATTGGCAGCCTGGGACAT 60.076 57.895 14.15 0.00 38.20 3.06
937 5340 3.129109 GCTTTATTAGGCGAGGTACCAC 58.871 50.000 15.94 7.03 0.00 4.16
966 5388 0.811616 CGGGACATGAGCAAGGCTAC 60.812 60.000 0.00 0.00 39.88 3.58
993 5415 6.817140 TGCAATAATGTTATTTGCATGCTCAA 59.183 30.769 20.33 12.15 34.93 3.02
1019 5442 5.746284 TCCGACATAAATACACCATTGGAA 58.254 37.500 10.37 0.00 0.00 3.53
1025 5448 6.377146 ACATAAATACACCATTGGAACCTCAC 59.623 38.462 10.37 0.00 0.00 3.51
1120 5564 0.905337 AGGCACCGGAGCTTCTTACT 60.905 55.000 23.40 8.00 34.17 2.24
1125 5583 1.617357 ACCGGAGCTTCTTACTCGTTT 59.383 47.619 9.46 0.00 34.87 3.60
1126 5584 2.260481 CCGGAGCTTCTTACTCGTTTC 58.740 52.381 0.00 0.00 34.87 2.78
1127 5585 2.260481 CGGAGCTTCTTACTCGTTTCC 58.740 52.381 0.00 0.00 34.87 3.13
1128 5586 2.352421 CGGAGCTTCTTACTCGTTTCCA 60.352 50.000 0.00 0.00 34.87 3.53
1129 5587 3.676324 CGGAGCTTCTTACTCGTTTCCAT 60.676 47.826 0.00 0.00 34.87 3.41
1130 5588 4.254492 GGAGCTTCTTACTCGTTTCCATT 58.746 43.478 0.00 0.00 34.87 3.16
1131 5589 4.330347 GGAGCTTCTTACTCGTTTCCATTC 59.670 45.833 0.00 0.00 34.87 2.67
1132 5590 4.894784 AGCTTCTTACTCGTTTCCATTCA 58.105 39.130 0.00 0.00 0.00 2.57
1133 5591 5.491982 AGCTTCTTACTCGTTTCCATTCAT 58.508 37.500 0.00 0.00 0.00 2.57
1144 5602 2.245159 TCCATTCATAAGCAGCTCGG 57.755 50.000 0.00 0.00 0.00 4.63
1147 5605 2.548707 CCATTCATAAGCAGCTCGGCTA 60.549 50.000 0.00 0.00 45.07 3.93
1151 5611 1.759459 ATAAGCAGCTCGGCTACCCC 61.759 60.000 0.00 0.00 45.07 4.95
1201 5665 0.037790 GAGCTCGTGAAGAAGGCAGT 60.038 55.000 0.00 0.00 0.00 4.40
1255 5731 2.444706 CAGGCTCCTCATCCCCGA 60.445 66.667 0.00 0.00 0.00 5.14
1338 5814 0.188587 TATGGCCGACTGGGAGAGAT 59.811 55.000 0.00 0.00 38.47 2.75
1352 5828 2.151202 GAGAGATTTGACCGCCACAAA 58.849 47.619 0.00 0.00 40.62 2.83
1362 5838 3.044305 GCCACAAAGCTCTCGCGT 61.044 61.111 5.77 0.00 42.32 6.01
1514 5990 2.094906 CCTCTTCAACGACGACCACATA 60.095 50.000 0.00 0.00 0.00 2.29
1677 6162 3.252701 CCAGGCTGCTGATATGTTCATTC 59.747 47.826 9.56 0.00 32.72 2.67
1717 6206 2.237893 TGAACGAGGGATTTTAGGGTCC 59.762 50.000 0.00 0.00 0.00 4.46
1741 6230 1.353103 GCACATGCATGTACCTCGC 59.647 57.895 30.92 24.55 39.39 5.03
1776 6268 4.280929 GTCTTTCTTTTAGGTGCCCACAAT 59.719 41.667 0.40 0.00 0.00 2.71
1783 6275 6.723977 TCTTTTAGGTGCCCACAATTTAGAAT 59.276 34.615 0.40 0.00 0.00 2.40
1815 6307 8.952278 GTAGAAATGAGTATGATCGAGTAGGAT 58.048 37.037 0.00 0.00 0.00 3.24
1920 6413 1.521616 GCTCCTCAGCTCCCTTCTG 59.478 63.158 0.00 0.00 43.09 3.02
1940 6433 4.299796 ATTGCGCCCAACCACCCT 62.300 61.111 4.18 0.00 32.95 4.34
1978 6471 5.877012 CCCACTGTATATATGCATCACTTCC 59.123 44.000 0.19 0.00 0.00 3.46
2006 6499 3.451894 GCACTTCCATTGCCCCGG 61.452 66.667 0.00 0.00 33.58 5.73
2007 6500 3.451894 CACTTCCATTGCCCCGGC 61.452 66.667 0.00 0.00 42.35 6.13
2008 6501 4.759205 ACTTCCATTGCCCCGGCC 62.759 66.667 2.62 0.00 41.09 6.13
2028 6576 4.363138 GCCCTTGTGTTTTCTTTCTCTTG 58.637 43.478 0.00 0.00 0.00 3.02
2042 6897 7.091533 TCTTTCTCTTGGAAGTCCCTAAAAT 57.908 36.000 0.00 0.00 35.16 1.82
2053 6908 8.425703 TGGAAGTCCCTAAAATTTTTACCAAAG 58.574 33.333 9.06 0.00 35.38 2.77
2054 6909 7.876068 GGAAGTCCCTAAAATTTTTACCAAAGG 59.124 37.037 9.06 8.32 0.00 3.11
2055 6910 7.924358 AGTCCCTAAAATTTTTACCAAAGGT 57.076 32.000 9.06 0.00 40.16 3.50
2056 6911 8.326765 AGTCCCTAAAATTTTTACCAAAGGTT 57.673 30.769 9.06 0.00 37.09 3.50
2058 6913 9.048446 GTCCCTAAAATTTTTACCAAAGGTTTC 57.952 33.333 9.06 0.00 37.09 2.78
2070 6925 5.666462 ACCAAAGGTTTCCACAATTTACAC 58.334 37.500 0.00 0.00 27.29 2.90
2084 6939 6.144402 CACAATTTACACAAGTTGCATCTTCC 59.856 38.462 7.06 0.00 35.40 3.46
2087 6942 5.843673 TTACACAAGTTGCATCTTCCAAA 57.156 34.783 7.06 0.00 0.00 3.28
2153 7012 3.834799 CCTACTCCCCCGCACGAC 61.835 72.222 0.00 0.00 0.00 4.34
2185 7044 2.105930 CTCCGGCTACTGCTGCTC 59.894 66.667 0.00 0.00 43.91 4.26
2187 7046 3.465403 CCGGCTACTGCTGCTCCT 61.465 66.667 0.00 0.00 43.91 3.69
2189 7048 1.520342 CGGCTACTGCTGCTCCTTC 60.520 63.158 0.00 0.00 38.88 3.46
2194 7054 0.041833 TACTGCTGCTCCTTCCCTCT 59.958 55.000 0.00 0.00 0.00 3.69
2209 7069 3.620488 TCCCTCTGGAATACACAAATGC 58.380 45.455 0.00 0.00 37.86 3.56
2241 7422 3.370978 GCGACTTGCATTTAGCTGAAGTA 59.629 43.478 0.00 0.00 45.94 2.24
2242 7423 4.142902 GCGACTTGCATTTAGCTGAAGTAA 60.143 41.667 0.00 0.00 45.94 2.24
2305 7495 0.664761 CGAAGCCATATGTTGCCCTG 59.335 55.000 1.24 0.00 0.00 4.45
2306 7496 0.386838 GAAGCCATATGTTGCCCTGC 59.613 55.000 1.24 0.00 0.00 4.85
2307 7497 0.324552 AAGCCATATGTTGCCCTGCA 60.325 50.000 1.24 0.00 36.47 4.41
2308 7498 1.039233 AGCCATATGTTGCCCTGCAC 61.039 55.000 1.24 0.00 38.71 4.57
2310 7500 1.727511 CCATATGTTGCCCTGCACGG 61.728 60.000 1.24 0.00 38.71 4.94
2320 7510 3.568093 CCTGCACGGGAAAGTTTTG 57.432 52.632 0.00 0.00 0.00 2.44
2321 7511 0.744281 CCTGCACGGGAAAGTTTTGT 59.256 50.000 0.00 0.00 0.00 2.83
2323 7513 1.403679 CTGCACGGGAAAGTTTTGTGA 59.596 47.619 16.22 5.37 32.39 3.58
2324 7514 2.028130 TGCACGGGAAAGTTTTGTGAT 58.972 42.857 16.22 0.00 32.39 3.06
2325 7515 3.215151 TGCACGGGAAAGTTTTGTGATA 58.785 40.909 16.22 5.75 32.39 2.15
2327 7517 3.610821 GCACGGGAAAGTTTTGTGATACC 60.611 47.826 16.22 0.96 32.39 2.73
2330 7520 4.277423 ACGGGAAAGTTTTGTGATACCAAG 59.723 41.667 0.00 0.00 0.00 3.61
2332 7522 4.587262 GGGAAAGTTTTGTGATACCAAGGT 59.413 41.667 0.00 0.00 0.00 3.50
2333 7523 5.069914 GGGAAAGTTTTGTGATACCAAGGTT 59.930 40.000 0.00 0.00 0.00 3.50
2334 7524 6.407639 GGGAAAGTTTTGTGATACCAAGGTTT 60.408 38.462 0.00 0.00 0.00 3.27
2335 7525 7.201929 GGGAAAGTTTTGTGATACCAAGGTTTA 60.202 37.037 0.00 0.00 0.00 2.01
2336 7526 7.865889 GGAAAGTTTTGTGATACCAAGGTTTAG 59.134 37.037 0.00 0.00 0.00 1.85
2337 7527 6.894339 AGTTTTGTGATACCAAGGTTTAGG 57.106 37.500 0.00 0.00 0.00 2.69
2338 7528 6.370453 AGTTTTGTGATACCAAGGTTTAGGT 58.630 36.000 0.00 0.00 41.89 3.08
2339 7529 6.264518 AGTTTTGTGATACCAAGGTTTAGGTG 59.735 38.462 0.00 0.00 38.87 4.00
2340 7530 5.570205 TTGTGATACCAAGGTTTAGGTGA 57.430 39.130 0.00 0.00 38.87 4.02
2341 7531 5.772393 TGTGATACCAAGGTTTAGGTGAT 57.228 39.130 0.00 0.00 38.87 3.06
2342 7532 6.877668 TGTGATACCAAGGTTTAGGTGATA 57.122 37.500 0.00 0.00 38.87 2.15
2343 7533 6.646267 TGTGATACCAAGGTTTAGGTGATAC 58.354 40.000 0.00 0.00 38.87 2.24
2344 7534 6.053650 GTGATACCAAGGTTTAGGTGATACC 58.946 44.000 0.00 0.00 38.87 2.73
2345 7535 3.622166 ACCAAGGTTTAGGTGATACCG 57.378 47.619 0.00 0.00 44.90 4.02
2346 7536 2.908351 ACCAAGGTTTAGGTGATACCGT 59.092 45.455 0.00 0.00 44.90 4.83
2347 7537 3.267483 CCAAGGTTTAGGTGATACCGTG 58.733 50.000 0.00 0.00 44.90 4.94
2348 7538 3.055675 CCAAGGTTTAGGTGATACCGTGA 60.056 47.826 7.79 0.00 44.90 4.35
2349 7539 4.383770 CCAAGGTTTAGGTGATACCGTGAT 60.384 45.833 7.79 0.00 44.90 3.06
2350 7540 5.163385 CCAAGGTTTAGGTGATACCGTGATA 60.163 44.000 7.79 0.00 44.90 2.15
2351 7541 5.526506 AGGTTTAGGTGATACCGTGATAC 57.473 43.478 0.00 0.00 44.90 2.24
2352 7542 4.037208 AGGTTTAGGTGATACCGTGATACG 59.963 45.833 0.00 0.00 44.90 3.06
2361 7551 4.420143 CGTGATACGGGCTTCTGG 57.580 61.111 0.00 0.00 38.08 3.86
2362 7552 1.227263 CGTGATACGGGCTTCTGGG 60.227 63.158 0.00 0.00 38.08 4.45
2363 7553 1.523938 GTGATACGGGCTTCTGGGC 60.524 63.158 0.00 0.00 40.05 5.36
2370 7560 4.344865 GGCTTCTGGGCCGTTGGA 62.345 66.667 0.00 0.00 42.82 3.53
2371 7561 2.044946 GCTTCTGGGCCGTTGGAT 60.045 61.111 0.00 0.00 0.00 3.41
2372 7562 2.115291 GCTTCTGGGCCGTTGGATC 61.115 63.158 0.00 0.00 0.00 3.36
2373 7563 1.604378 CTTCTGGGCCGTTGGATCT 59.396 57.895 0.00 0.00 0.00 2.75
2374 7564 0.462759 CTTCTGGGCCGTTGGATCTC 60.463 60.000 0.00 0.00 0.00 2.75
2375 7565 1.198094 TTCTGGGCCGTTGGATCTCA 61.198 55.000 0.00 0.00 0.00 3.27
2376 7566 1.198094 TCTGGGCCGTTGGATCTCAA 61.198 55.000 0.00 0.00 0.00 3.02
2377 7567 0.322456 CTGGGCCGTTGGATCTCAAA 60.322 55.000 0.00 0.00 37.08 2.69
2378 7568 0.331278 TGGGCCGTTGGATCTCAAAT 59.669 50.000 0.00 0.00 37.08 2.32
2379 7569 1.025041 GGGCCGTTGGATCTCAAATC 58.975 55.000 0.00 0.00 37.08 2.17
2380 7570 1.408822 GGGCCGTTGGATCTCAAATCT 60.409 52.381 0.00 0.00 37.08 2.40
2381 7571 2.158813 GGGCCGTTGGATCTCAAATCTA 60.159 50.000 0.00 0.00 37.08 1.98
2382 7572 3.541632 GGCCGTTGGATCTCAAATCTAA 58.458 45.455 0.00 0.00 37.08 2.10
2383 7573 3.312697 GGCCGTTGGATCTCAAATCTAAC 59.687 47.826 0.00 4.69 37.08 2.34
2384 7574 3.938963 GCCGTTGGATCTCAAATCTAACA 59.061 43.478 12.67 0.00 38.79 2.41
2385 7575 4.034510 GCCGTTGGATCTCAAATCTAACAG 59.965 45.833 12.67 4.72 38.79 3.16
2386 7576 5.178797 CCGTTGGATCTCAAATCTAACAGT 58.821 41.667 12.67 0.00 38.79 3.55
2387 7577 6.338146 CCGTTGGATCTCAAATCTAACAGTA 58.662 40.000 12.67 0.00 38.79 2.74
2388 7578 6.986817 CCGTTGGATCTCAAATCTAACAGTAT 59.013 38.462 12.67 0.00 38.79 2.12
2389 7579 7.169982 CCGTTGGATCTCAAATCTAACAGTATC 59.830 40.741 12.67 0.00 38.79 2.24
2390 7580 7.923344 CGTTGGATCTCAAATCTAACAGTATCT 59.077 37.037 12.67 0.00 38.79 1.98
2391 7581 9.039870 GTTGGATCTCAAATCTAACAGTATCTG 57.960 37.037 8.76 0.00 38.73 2.90
2392 7582 8.539117 TGGATCTCAAATCTAACAGTATCTGA 57.461 34.615 3.70 0.00 35.18 3.27
2393 7583 8.637099 TGGATCTCAAATCTAACAGTATCTGAG 58.363 37.037 3.70 0.00 35.18 3.35
2394 7584 8.087750 GGATCTCAAATCTAACAGTATCTGAGG 58.912 40.741 3.70 0.00 35.18 3.86
2395 7585 8.774546 ATCTCAAATCTAACAGTATCTGAGGA 57.225 34.615 3.70 0.12 35.18 3.71
2396 7586 8.231692 TCTCAAATCTAACAGTATCTGAGGAG 57.768 38.462 3.70 0.00 35.18 3.69
2397 7587 6.810911 TCAAATCTAACAGTATCTGAGGAGC 58.189 40.000 3.70 0.00 35.18 4.70
2398 7588 5.799827 AATCTAACAGTATCTGAGGAGCC 57.200 43.478 3.70 0.00 35.18 4.70
2399 7589 3.567397 TCTAACAGTATCTGAGGAGCCC 58.433 50.000 3.70 0.00 35.18 5.19
2400 7590 2.559381 AACAGTATCTGAGGAGCCCT 57.441 50.000 3.70 0.00 35.18 5.19
2401 7591 2.559381 ACAGTATCTGAGGAGCCCTT 57.441 50.000 3.70 0.00 35.18 3.95
2402 7592 2.114616 ACAGTATCTGAGGAGCCCTTG 58.885 52.381 3.70 0.00 35.18 3.61
2403 7593 2.114616 CAGTATCTGAGGAGCCCTTGT 58.885 52.381 0.00 0.00 31.76 3.16
2404 7594 3.300388 CAGTATCTGAGGAGCCCTTGTA 58.700 50.000 0.00 0.00 31.76 2.41
2405 7595 3.068873 CAGTATCTGAGGAGCCCTTGTAC 59.931 52.174 0.00 0.00 31.76 2.90
2416 7606 0.461339 CCCTTGTACCTGCGCGTAAT 60.461 55.000 8.43 0.00 0.00 1.89
2417 7607 1.365699 CCTTGTACCTGCGCGTAATT 58.634 50.000 8.43 0.00 0.00 1.40
2418 7608 1.735571 CCTTGTACCTGCGCGTAATTT 59.264 47.619 8.43 0.00 0.00 1.82
2419 7609 2.160813 CCTTGTACCTGCGCGTAATTTT 59.839 45.455 8.43 0.00 0.00 1.82
2420 7610 3.371591 CCTTGTACCTGCGCGTAATTTTA 59.628 43.478 8.43 0.00 0.00 1.52
2421 7611 4.142859 CCTTGTACCTGCGCGTAATTTTAA 60.143 41.667 8.43 0.00 0.00 1.52
2423 7613 4.244066 TGTACCTGCGCGTAATTTTAAGA 58.756 39.130 8.43 0.00 0.00 2.10
2424 7614 3.734776 ACCTGCGCGTAATTTTAAGAC 57.265 42.857 8.43 0.00 0.00 3.01
2427 7617 4.214758 ACCTGCGCGTAATTTTAAGACTTT 59.785 37.500 8.43 0.00 0.00 2.66
2428 7618 5.151389 CCTGCGCGTAATTTTAAGACTTTT 58.849 37.500 8.43 0.00 0.00 2.27
2429 7619 5.059221 CCTGCGCGTAATTTTAAGACTTTTG 59.941 40.000 8.43 0.00 0.00 2.44
2431 7621 5.148568 GCGCGTAATTTTAAGACTTTTGGA 58.851 37.500 8.43 0.00 0.00 3.53
2432 7622 5.798434 GCGCGTAATTTTAAGACTTTTGGAT 59.202 36.000 8.43 0.00 0.00 3.41
2433 7623 6.962678 GCGCGTAATTTTAAGACTTTTGGATA 59.037 34.615 8.43 0.00 0.00 2.59
2436 7626 8.182227 GCGTAATTTTAAGACTTTTGGATAGCT 58.818 33.333 0.00 0.00 0.00 3.32
2476 10658 1.003355 CTCACGGGAGCACCACATT 60.003 57.895 0.00 0.00 40.22 2.71
2477 10659 1.300971 CTCACGGGAGCACCACATTG 61.301 60.000 0.00 0.00 40.22 2.82
2478 10660 2.034066 ACGGGAGCACCACATTGG 59.966 61.111 1.58 0.00 45.02 3.16
2490 10672 3.348647 CCACATTGGTATGACCTGACA 57.651 47.619 0.00 0.00 39.58 3.58
2491 10673 3.889815 CCACATTGGTATGACCTGACAT 58.110 45.455 0.00 0.00 39.58 3.06
2492 10674 4.272489 CCACATTGGTATGACCTGACATT 58.728 43.478 0.00 0.00 39.58 2.71
2493 10675 4.706476 CCACATTGGTATGACCTGACATTT 59.294 41.667 0.00 0.00 39.58 2.32
2494 10676 5.163622 CCACATTGGTATGACCTGACATTTC 60.164 44.000 0.00 0.00 39.58 2.17
2495 10677 4.949856 ACATTGGTATGACCTGACATTTCC 59.050 41.667 0.00 0.00 39.58 3.13
2496 10678 3.644966 TGGTATGACCTGACATTTCCC 57.355 47.619 0.00 0.00 39.58 3.97
2498 10680 2.509964 GGTATGACCTGACATTTCCCCT 59.490 50.000 0.00 0.00 34.73 4.79
2499 10681 2.814805 ATGACCTGACATTTCCCCTG 57.185 50.000 0.00 0.00 0.00 4.45
2500 10682 0.038166 TGACCTGACATTTCCCCTGC 59.962 55.000 0.00 0.00 0.00 4.85
2501 10683 0.681243 GACCTGACATTTCCCCTGCC 60.681 60.000 0.00 0.00 0.00 4.85
2502 10684 1.142688 ACCTGACATTTCCCCTGCCT 61.143 55.000 0.00 0.00 0.00 4.75
2503 10685 0.040204 CCTGACATTTCCCCTGCCTT 59.960 55.000 0.00 0.00 0.00 4.35
2505 10687 0.899717 TGACATTTCCCCTGCCTTGC 60.900 55.000 0.00 0.00 0.00 4.01
2507 10689 1.187567 ACATTTCCCCTGCCTTGCAC 61.188 55.000 0.00 0.00 33.79 4.57
2508 10690 1.155859 ATTTCCCCTGCCTTGCACA 59.844 52.632 0.00 0.00 33.79 4.57
2509 10691 0.901580 ATTTCCCCTGCCTTGCACAG 60.902 55.000 0.00 0.00 33.79 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.447489 CCTGGAGCAGCTGACGAAG 60.447 63.158 20.43 8.86 0.00 3.79
21 22 2.210013 ACCTGGAGCAGCTGACGAA 61.210 57.895 20.43 0.00 0.00 3.85
23 24 2.433838 CACCTGGAGCAGCTGACG 60.434 66.667 20.43 0.00 0.00 4.35
24 25 0.321671 TAACACCTGGAGCAGCTGAC 59.678 55.000 20.43 10.42 0.00 3.51
28 29 1.537202 CAAAGTAACACCTGGAGCAGC 59.463 52.381 0.00 0.00 0.00 5.25
29 30 2.549754 CACAAAGTAACACCTGGAGCAG 59.450 50.000 0.00 0.00 0.00 4.24
30 31 2.171659 TCACAAAGTAACACCTGGAGCA 59.828 45.455 0.00 0.00 0.00 4.26
31 32 2.846193 TCACAAAGTAACACCTGGAGC 58.154 47.619 0.00 0.00 0.00 4.70
32 33 4.389374 ACATCACAAAGTAACACCTGGAG 58.611 43.478 0.00 0.00 0.00 3.86
33 34 4.431416 ACATCACAAAGTAACACCTGGA 57.569 40.909 0.00 0.00 0.00 3.86
34 35 4.578516 TGAACATCACAAAGTAACACCTGG 59.421 41.667 0.00 0.00 0.00 4.45
35 36 5.510671 GTGAACATCACAAAGTAACACCTG 58.489 41.667 5.65 0.00 46.22 4.00
36 37 5.751243 GTGAACATCACAAAGTAACACCT 57.249 39.130 5.65 0.00 46.22 4.00
50 51 2.860293 CGTGGCCGTGTGAACATC 59.140 61.111 0.00 0.00 0.00 3.06
51 52 3.353836 GCGTGGCCGTGTGAACAT 61.354 61.111 0.00 0.00 36.15 2.71
52 53 4.539083 AGCGTGGCCGTGTGAACA 62.539 61.111 0.00 0.00 36.15 3.18
53 54 3.712881 GAGCGTGGCCGTGTGAAC 61.713 66.667 0.00 0.00 36.15 3.18
55 56 3.932580 GATGAGCGTGGCCGTGTGA 62.933 63.158 0.00 0.00 36.15 3.58
56 57 2.557059 TAGATGAGCGTGGCCGTGTG 62.557 60.000 0.00 0.00 36.15 3.82
58 59 1.878522 GTAGATGAGCGTGGCCGTG 60.879 63.158 0.00 0.00 36.15 4.94
59 60 2.052690 AGTAGATGAGCGTGGCCGT 61.053 57.895 0.00 0.00 36.15 5.68
61 62 0.807667 CACAGTAGATGAGCGTGGCC 60.808 60.000 0.00 0.00 0.00 5.36
62 63 0.173481 TCACAGTAGATGAGCGTGGC 59.827 55.000 0.00 0.00 0.00 5.01
63 64 1.202348 TGTCACAGTAGATGAGCGTGG 59.798 52.381 0.00 0.00 0.00 4.94
64 65 2.636768 TGTCACAGTAGATGAGCGTG 57.363 50.000 0.00 0.00 0.00 5.34
65 66 2.668556 CGTTGTCACAGTAGATGAGCGT 60.669 50.000 0.00 0.00 0.00 5.07
67 68 2.917971 GACGTTGTCACAGTAGATGAGC 59.082 50.000 0.00 0.00 32.09 4.26
69 70 3.190744 GGAGACGTTGTCACAGTAGATGA 59.809 47.826 0.00 0.00 34.60 2.92
71 72 3.851976 GGAGACGTTGTCACAGTAGAT 57.148 47.619 0.00 0.00 34.60 1.98
86 87 1.991099 GAGAGGTACACGGCGGAGAC 61.991 65.000 13.24 5.24 0.00 3.36
87 88 1.748122 GAGAGGTACACGGCGGAGA 60.748 63.158 13.24 0.00 0.00 3.71
88 89 2.772691 GGAGAGGTACACGGCGGAG 61.773 68.421 13.24 5.87 0.00 4.63
90 91 4.189188 CGGAGAGGTACACGGCGG 62.189 72.222 13.24 2.35 0.00 6.13
91 92 4.849329 GCGGAGAGGTACACGGCG 62.849 72.222 4.80 4.80 0.00 6.46
92 93 4.509737 GGCGGAGAGGTACACGGC 62.510 72.222 0.00 0.00 44.25 5.68
93 94 2.642254 TTGGCGGAGAGGTACACGG 61.642 63.158 0.00 0.00 0.00 4.94
94 95 1.445582 GTTGGCGGAGAGGTACACG 60.446 63.158 0.00 0.00 0.00 4.49
95 96 1.079336 GGTTGGCGGAGAGGTACAC 60.079 63.158 0.00 0.00 0.00 2.90
96 97 2.288025 GGGTTGGCGGAGAGGTACA 61.288 63.158 0.00 0.00 0.00 2.90
97 98 2.582978 GGGTTGGCGGAGAGGTAC 59.417 66.667 0.00 0.00 0.00 3.34
98 99 3.072468 CGGGTTGGCGGAGAGGTA 61.072 66.667 0.00 0.00 0.00 3.08
107 108 4.360405 ATGGTGGACCGGGTTGGC 62.360 66.667 6.32 0.00 43.94 4.52
108 109 2.045340 GATGGTGGACCGGGTTGG 60.045 66.667 6.32 0.00 46.41 3.77
109 110 2.435938 CGATGGTGGACCGGGTTG 60.436 66.667 6.32 0.00 39.43 3.77
110 111 2.926242 ACGATGGTGGACCGGGTT 60.926 61.111 6.32 0.00 39.43 4.11
111 112 3.387947 GACGATGGTGGACCGGGT 61.388 66.667 6.32 0.00 39.43 5.28
112 113 4.508128 CGACGATGGTGGACCGGG 62.508 72.222 6.32 0.00 39.43 5.73
114 115 1.804326 GTTCGACGATGGTGGACCG 60.804 63.158 0.00 0.00 39.43 4.79
115 116 1.804326 CGTTCGACGATGGTGGACC 60.804 63.158 0.00 0.00 46.05 4.46
116 117 1.210931 TCGTTCGACGATGGTGGAC 59.789 57.895 0.00 0.00 46.73 4.02
117 118 3.670989 TCGTTCGACGATGGTGGA 58.329 55.556 0.00 0.00 46.73 4.02
126 127 2.860735 AGCTCAATATGCTTCGTTCGAC 59.139 45.455 0.00 0.00 37.52 4.20
128 129 2.097685 CGAGCTCAATATGCTTCGTTCG 60.098 50.000 15.40 0.00 41.30 3.95
129 130 3.060873 GTCGAGCTCAATATGCTTCGTTC 60.061 47.826 15.40 0.00 41.30 3.95
130 131 2.860735 GTCGAGCTCAATATGCTTCGTT 59.139 45.455 15.40 0.00 41.30 3.85
131 132 2.159240 TGTCGAGCTCAATATGCTTCGT 60.159 45.455 15.40 0.00 41.30 3.85
132 133 2.463876 TGTCGAGCTCAATATGCTTCG 58.536 47.619 15.40 0.00 41.30 3.79
134 135 4.747108 GTGTATGTCGAGCTCAATATGCTT 59.253 41.667 15.40 0.00 41.30 3.91
135 136 4.038522 AGTGTATGTCGAGCTCAATATGCT 59.961 41.667 15.40 7.70 44.24 3.79
136 137 4.302455 AGTGTATGTCGAGCTCAATATGC 58.698 43.478 15.40 3.33 0.00 3.14
138 139 6.341316 ACAAAGTGTATGTCGAGCTCAATAT 58.659 36.000 15.40 1.14 0.00 1.28
139 140 5.720202 ACAAAGTGTATGTCGAGCTCAATA 58.280 37.500 15.40 5.64 0.00 1.90
141 142 3.990092 ACAAAGTGTATGTCGAGCTCAA 58.010 40.909 15.40 0.00 0.00 3.02
143 144 3.059570 CGAACAAAGTGTATGTCGAGCTC 59.940 47.826 2.73 2.73 0.00 4.09
144 145 2.987149 CGAACAAAGTGTATGTCGAGCT 59.013 45.455 0.00 0.00 0.00 4.09
145 146 2.729882 ACGAACAAAGTGTATGTCGAGC 59.270 45.455 7.69 0.00 0.00 5.03
146 147 3.978855 TCACGAACAAAGTGTATGTCGAG 59.021 43.478 7.69 1.42 40.28 4.04
147 148 3.967401 TCACGAACAAAGTGTATGTCGA 58.033 40.909 7.69 0.00 40.28 4.20
148 149 3.421826 GCTCACGAACAAAGTGTATGTCG 60.422 47.826 0.00 0.70 40.28 4.35
149 150 3.493129 TGCTCACGAACAAAGTGTATGTC 59.507 43.478 0.00 0.00 40.28 3.06
150 151 3.462982 TGCTCACGAACAAAGTGTATGT 58.537 40.909 0.00 0.00 40.28 2.29
151 152 3.120546 CCTGCTCACGAACAAAGTGTATG 60.121 47.826 0.00 0.00 40.28 2.39
152 153 3.067106 CCTGCTCACGAACAAAGTGTAT 58.933 45.455 0.00 0.00 40.28 2.29
153 154 2.159014 ACCTGCTCACGAACAAAGTGTA 60.159 45.455 0.00 0.00 40.28 2.90
155 156 1.003545 CACCTGCTCACGAACAAAGTG 60.004 52.381 0.00 0.00 40.71 3.16
156 157 1.299541 CACCTGCTCACGAACAAAGT 58.700 50.000 0.00 0.00 0.00 2.66
157 158 0.588252 CCACCTGCTCACGAACAAAG 59.412 55.000 0.00 0.00 0.00 2.77
158 159 1.444119 GCCACCTGCTCACGAACAAA 61.444 55.000 0.00 0.00 36.87 2.83
159 160 1.891919 GCCACCTGCTCACGAACAA 60.892 57.895 0.00 0.00 36.87 2.83
160 161 2.280797 GCCACCTGCTCACGAACA 60.281 61.111 0.00 0.00 36.87 3.18
185 186 4.477975 GTGGAGGACTCGGACGCG 62.478 72.222 3.53 3.53 0.00 6.01
186 187 4.477975 CGTGGAGGACTCGGACGC 62.478 72.222 8.83 0.00 32.22 5.19
187 188 3.036783 GACGTGGAGGACTCGGACG 62.037 68.421 16.28 16.28 40.07 4.79
188 189 2.698763 GGACGTGGAGGACTCGGAC 61.699 68.421 0.00 0.00 0.00 4.79
189 190 2.360852 GGACGTGGAGGACTCGGA 60.361 66.667 0.00 0.00 0.00 4.55
190 191 3.450115 GGGACGTGGAGGACTCGG 61.450 72.222 0.00 0.00 0.00 4.63
208 209 4.077188 GTGAACTGCTGCGCCGTC 62.077 66.667 4.18 0.00 0.00 4.79
212 213 3.121030 ATCGGTGAACTGCTGCGC 61.121 61.111 0.00 0.00 0.00 6.09
213 214 1.959899 GACATCGGTGAACTGCTGCG 61.960 60.000 0.65 0.00 0.00 5.18
214 215 0.950555 TGACATCGGTGAACTGCTGC 60.951 55.000 0.65 0.00 0.00 5.25
216 217 1.276138 TCATGACATCGGTGAACTGCT 59.724 47.619 0.65 0.00 0.00 4.24
217 218 1.394917 GTCATGACATCGGTGAACTGC 59.605 52.381 21.07 0.00 0.00 4.40
218 219 2.687370 TGTCATGACATCGGTGAACTG 58.313 47.619 24.56 0.00 36.21 3.16
219 220 3.401033 TTGTCATGACATCGGTGAACT 57.599 42.857 28.32 0.00 41.52 3.01
221 222 3.501828 CCTTTTGTCATGACATCGGTGAA 59.498 43.478 28.32 15.82 41.52 3.18
222 223 3.073678 CCTTTTGTCATGACATCGGTGA 58.926 45.455 28.32 10.41 41.52 4.02
224 225 3.074412 GTCCTTTTGTCATGACATCGGT 58.926 45.455 28.32 0.00 41.52 4.69
225 226 3.125829 CAGTCCTTTTGTCATGACATCGG 59.874 47.826 28.32 24.98 41.52 4.18
227 228 3.119708 GGCAGTCCTTTTGTCATGACATC 60.120 47.826 28.32 14.21 41.52 3.06
228 229 2.821969 GGCAGTCCTTTTGTCATGACAT 59.178 45.455 28.32 9.66 41.52 3.06
230 231 2.508526 AGGCAGTCCTTTTGTCATGAC 58.491 47.619 19.27 19.27 40.66 3.06
231 232 2.957402 AGGCAGTCCTTTTGTCATGA 57.043 45.000 0.00 0.00 40.66 3.07
233 234 4.042187 AGAAGTAGGCAGTCCTTTTGTCAT 59.958 41.667 0.00 0.00 40.66 3.06
236 237 4.103311 AGAAGAAGTAGGCAGTCCTTTTGT 59.897 41.667 0.00 0.00 40.66 2.83
237 238 4.646572 AGAAGAAGTAGGCAGTCCTTTTG 58.353 43.478 0.00 0.00 40.66 2.44
238 239 4.984146 AGAAGAAGTAGGCAGTCCTTTT 57.016 40.909 0.00 0.00 40.66 2.27
239 240 4.984146 AAGAAGAAGTAGGCAGTCCTTT 57.016 40.909 0.00 0.00 40.66 3.11
243 244 4.170256 CTCGAAAGAAGAAGTAGGCAGTC 58.830 47.826 0.00 0.00 41.32 3.51
244 245 3.056465 CCTCGAAAGAAGAAGTAGGCAGT 60.056 47.826 0.00 0.00 41.32 4.40
245 246 3.193691 TCCTCGAAAGAAGAAGTAGGCAG 59.806 47.826 0.00 0.00 41.32 4.85
247 248 3.193903 ACTCCTCGAAAGAAGAAGTAGGC 59.806 47.826 1.70 0.00 41.32 3.93
248 249 5.047943 TGAACTCCTCGAAAGAAGAAGTAGG 60.048 44.000 1.70 0.00 41.32 3.18
249 250 6.015027 TGAACTCCTCGAAAGAAGAAGTAG 57.985 41.667 1.70 0.00 41.32 2.57
250 251 5.047943 CCTGAACTCCTCGAAAGAAGAAGTA 60.048 44.000 1.70 0.00 41.32 2.24
253 254 3.641906 ACCTGAACTCCTCGAAAGAAGAA 59.358 43.478 1.70 0.00 41.32 2.52
254 255 3.231818 ACCTGAACTCCTCGAAAGAAGA 58.768 45.455 1.70 0.00 41.32 2.87
256 257 2.299297 GGACCTGAACTCCTCGAAAGAA 59.701 50.000 1.70 0.00 41.32 2.52
257 258 1.893801 GGACCTGAACTCCTCGAAAGA 59.106 52.381 1.70 0.00 39.12 2.52
261 262 0.112606 ACTGGACCTGAACTCCTCGA 59.887 55.000 5.22 0.00 0.00 4.04
263 264 1.931635 AGACTGGACCTGAACTCCTC 58.068 55.000 5.22 0.00 0.00 3.71
265 266 2.772287 CAAAGACTGGACCTGAACTCC 58.228 52.381 5.22 0.00 0.00 3.85
266 267 2.147150 GCAAAGACTGGACCTGAACTC 58.853 52.381 5.22 0.00 0.00 3.01
267 268 1.541233 CGCAAAGACTGGACCTGAACT 60.541 52.381 5.22 1.71 0.00 3.01
268 269 0.868406 CGCAAAGACTGGACCTGAAC 59.132 55.000 5.22 0.00 0.00 3.18
271 272 0.034059 AGACGCAAAGACTGGACCTG 59.966 55.000 0.00 0.00 0.00 4.00
272 273 0.318762 GAGACGCAAAGACTGGACCT 59.681 55.000 0.00 0.00 0.00 3.85
273 274 0.670854 GGAGACGCAAAGACTGGACC 60.671 60.000 0.00 0.00 0.00 4.46
274 275 2.828933 GGAGACGCAAAGACTGGAC 58.171 57.895 0.00 0.00 0.00 4.02
311 312 2.525105 ACCATATGTTCAACACCCCC 57.475 50.000 0.00 0.00 0.00 5.40
313 314 4.555262 CACAAACCATATGTTCAACACCC 58.445 43.478 0.00 0.00 35.67 4.61
314 315 3.987220 GCACAAACCATATGTTCAACACC 59.013 43.478 0.00 0.00 35.67 4.16
316 317 4.926140 TGCACAAACCATATGTTCAACA 57.074 36.364 1.24 0.00 35.67 3.33
317 318 5.229423 ACATGCACAAACCATATGTTCAAC 58.771 37.500 1.24 0.00 35.67 3.18
318 319 5.465532 ACATGCACAAACCATATGTTCAA 57.534 34.783 1.24 0.00 35.67 2.69
319 320 6.772360 ATACATGCACAAACCATATGTTCA 57.228 33.333 1.24 0.00 35.67 3.18
321 322 8.694540 ACAATATACATGCACAAACCATATGTT 58.305 29.630 1.24 0.00 39.43 2.71
326 327 9.573166 ACTATACAATATACATGCACAAACCAT 57.427 29.630 0.00 0.00 0.00 3.55
328 329 8.504005 GGACTATACAATATACATGCACAAACC 58.496 37.037 0.00 0.00 0.00 3.27
329 330 8.221100 CGGACTATACAATATACATGCACAAAC 58.779 37.037 0.00 0.00 0.00 2.93
331 332 6.871492 CCGGACTATACAATATACATGCACAA 59.129 38.462 0.00 0.00 0.00 3.33
332 333 6.394809 CCGGACTATACAATATACATGCACA 58.605 40.000 0.00 0.00 0.00 4.57
334 335 5.416083 GCCGGACTATACAATATACATGCA 58.584 41.667 5.05 0.00 0.00 3.96
335 336 4.809426 GGCCGGACTATACAATATACATGC 59.191 45.833 5.05 0.00 0.00 4.06
337 338 5.027460 TGGGCCGGACTATACAATATACAT 58.973 41.667 7.57 0.00 0.00 2.29
338 339 4.221262 GTGGGCCGGACTATACAATATACA 59.779 45.833 7.57 0.00 0.00 2.29
340 341 3.770933 GGTGGGCCGGACTATACAATATA 59.229 47.826 7.57 0.00 0.00 0.86
342 343 1.972795 GGTGGGCCGGACTATACAATA 59.027 52.381 7.57 0.00 0.00 1.90
344 345 0.325860 AGGTGGGCCGGACTATACAA 60.326 55.000 7.57 0.00 40.50 2.41
345 346 0.757935 GAGGTGGGCCGGACTATACA 60.758 60.000 7.57 0.00 40.50 2.29
347 348 1.152398 GGAGGTGGGCCGGACTATA 60.152 63.158 7.57 0.00 40.50 1.31
348 349 1.661990 TAGGAGGTGGGCCGGACTAT 61.662 60.000 7.57 0.00 40.50 2.12
349 350 2.294170 CTAGGAGGTGGGCCGGACTA 62.294 65.000 7.57 0.00 40.50 2.59
350 351 3.680196 TAGGAGGTGGGCCGGACT 61.680 66.667 7.57 0.00 40.50 3.85
351 352 3.155167 CTAGGAGGTGGGCCGGAC 61.155 72.222 5.05 0.00 40.50 4.79
352 353 3.674050 GACTAGGAGGTGGGCCGGA 62.674 68.421 5.05 0.00 40.50 5.14
354 355 1.338136 AATGACTAGGAGGTGGGCCG 61.338 60.000 0.00 0.00 40.50 6.13
355 356 0.181350 CAATGACTAGGAGGTGGGCC 59.819 60.000 0.00 0.00 0.00 5.80
356 357 0.912486 ACAATGACTAGGAGGTGGGC 59.088 55.000 0.00 0.00 0.00 5.36
357 358 5.148502 ACTATACAATGACTAGGAGGTGGG 58.851 45.833 0.00 0.00 0.00 4.61
358 359 6.323996 TCAACTATACAATGACTAGGAGGTGG 59.676 42.308 0.00 0.00 0.00 4.61
359 360 7.348080 TCAACTATACAATGACTAGGAGGTG 57.652 40.000 0.00 0.00 0.00 4.00
360 361 6.551601 CCTCAACTATACAATGACTAGGAGGT 59.448 42.308 0.00 0.00 33.95 3.85
361 362 6.551601 ACCTCAACTATACAATGACTAGGAGG 59.448 42.308 0.00 0.00 42.02 4.30
362 363 7.589958 ACCTCAACTATACAATGACTAGGAG 57.410 40.000 0.00 0.00 0.00 3.69
363 364 7.399191 ACAACCTCAACTATACAATGACTAGGA 59.601 37.037 0.00 0.00 0.00 2.94
364 365 7.492669 CACAACCTCAACTATACAATGACTAGG 59.507 40.741 0.00 0.00 0.00 3.02
365 366 7.492669 CCACAACCTCAACTATACAATGACTAG 59.507 40.741 0.00 0.00 0.00 2.57
366 367 7.327975 CCACAACCTCAACTATACAATGACTA 58.672 38.462 0.00 0.00 0.00 2.59
368 369 5.163754 GCCACAACCTCAACTATACAATGAC 60.164 44.000 0.00 0.00 0.00 3.06
369 370 4.941263 GCCACAACCTCAACTATACAATGA 59.059 41.667 0.00 0.00 0.00 2.57
370 371 4.096382 GGCCACAACCTCAACTATACAATG 59.904 45.833 0.00 0.00 0.00 2.82
371 372 4.270008 GGCCACAACCTCAACTATACAAT 58.730 43.478 0.00 0.00 0.00 2.71
372 373 3.560453 GGGCCACAACCTCAACTATACAA 60.560 47.826 4.39 0.00 0.00 2.41
373 374 2.026636 GGGCCACAACCTCAACTATACA 60.027 50.000 4.39 0.00 0.00 2.29
374 375 2.026636 TGGGCCACAACCTCAACTATAC 60.027 50.000 0.00 0.00 0.00 1.47
375 376 2.238646 CTGGGCCACAACCTCAACTATA 59.761 50.000 0.00 0.00 0.00 1.31
377 378 0.400213 CTGGGCCACAACCTCAACTA 59.600 55.000 0.00 0.00 0.00 2.24
378 379 1.151450 CTGGGCCACAACCTCAACT 59.849 57.895 0.00 0.00 0.00 3.16
379 380 0.755327 AACTGGGCCACAACCTCAAC 60.755 55.000 0.00 0.00 0.00 3.18
381 382 0.754957 CAAACTGGGCCACAACCTCA 60.755 55.000 0.00 0.00 0.00 3.86
382 383 0.755327 ACAAACTGGGCCACAACCTC 60.755 55.000 0.00 0.00 0.00 3.85
383 384 0.553819 TACAAACTGGGCCACAACCT 59.446 50.000 0.00 0.00 0.00 3.50
384 385 0.671796 GTACAAACTGGGCCACAACC 59.328 55.000 0.00 0.00 0.00 3.77
385 386 1.607148 GAGTACAAACTGGGCCACAAC 59.393 52.381 0.00 0.00 35.56 3.32
387 388 0.109723 GGAGTACAAACTGGGCCACA 59.890 55.000 0.00 0.00 35.56 4.17
388 389 0.109723 TGGAGTACAAACTGGGCCAC 59.890 55.000 0.00 0.00 35.56 5.01
390 391 3.577805 ATATGGAGTACAAACTGGGCC 57.422 47.619 0.00 0.00 35.56 5.80
394 395 6.087687 CGCACGTATATATGGAGTACAAACTG 59.912 42.308 6.89 0.00 35.56 3.16
395 396 6.147581 CGCACGTATATATGGAGTACAAACT 58.852 40.000 6.89 0.00 39.21 2.66
397 398 4.919168 GCGCACGTATATATGGAGTACAAA 59.081 41.667 0.30 0.00 0.00 2.83
399 400 3.754850 AGCGCACGTATATATGGAGTACA 59.245 43.478 11.47 0.00 0.00 2.90
400 401 4.352600 AGCGCACGTATATATGGAGTAC 57.647 45.455 11.47 0.00 0.00 2.73
401 402 5.505159 GCATAGCGCACGTATATATGGAGTA 60.505 44.000 11.47 0.00 41.79 2.59
402 403 4.733815 GCATAGCGCACGTATATATGGAGT 60.734 45.833 11.47 0.00 41.79 3.85
404 405 3.702330 GCATAGCGCACGTATATATGGA 58.298 45.455 11.47 0.00 41.79 3.41
417 418 1.428448 TATTGATCGGTGCATAGCGC 58.572 50.000 0.00 0.00 46.67 5.92
419 420 5.567234 CGATATATTGATCGGTGCATAGC 57.433 43.478 0.00 0.00 43.99 2.97
430 431 8.846943 TTGGCAATACTTCACGATATATTGAT 57.153 30.769 6.98 0.00 37.25 2.57
433 434 9.120538 AGTTTTGGCAATACTTCACGATATATT 57.879 29.630 16.20 0.00 0.00 1.28
434 435 8.677148 AGTTTTGGCAATACTTCACGATATAT 57.323 30.769 16.20 0.00 0.00 0.86
436 437 6.823689 AGAGTTTTGGCAATACTTCACGATAT 59.176 34.615 21.52 0.00 0.00 1.63
437 438 6.170506 AGAGTTTTGGCAATACTTCACGATA 58.829 36.000 21.52 0.00 0.00 2.92
438 439 5.003804 AGAGTTTTGGCAATACTTCACGAT 58.996 37.500 21.52 1.12 0.00 3.73
439 440 4.385825 AGAGTTTTGGCAATACTTCACGA 58.614 39.130 21.52 0.00 0.00 4.35
440 441 4.666655 CGAGAGTTTTGGCAATACTTCACG 60.667 45.833 21.52 20.53 0.00 4.35
442 443 4.385825 ACGAGAGTTTTGGCAATACTTCA 58.614 39.130 21.52 0.00 46.40 3.02
464 465 6.707440 TTTTCTTATGCAGTCTGTTGGAAA 57.293 33.333 0.93 3.77 0.00 3.13
465 466 6.707440 TTTTTCTTATGCAGTCTGTTGGAA 57.293 33.333 0.93 0.00 0.00 3.53
495 4806 2.820197 TCCGTGATAGATCGATGGAAGG 59.180 50.000 0.54 0.00 0.00 3.46
498 4809 3.418684 TCTCCGTGATAGATCGATGGA 57.581 47.619 0.54 0.00 0.00 3.41
519 4832 6.164176 GCTCCTAGTACAAAGTAGAAGCAAA 58.836 40.000 0.00 0.00 38.52 3.68
539 4861 0.670546 TGTGCTTTGCTACTCGCTCC 60.671 55.000 0.00 0.00 40.11 4.70
598 4937 2.906897 CCGCTGCTTTGTGTGGGT 60.907 61.111 0.00 0.00 0.00 4.51
628 4967 1.253034 CGATAGCGCGTCTCTGTTTTC 59.747 52.381 8.43 0.00 0.00 2.29
647 4987 1.270550 AGAATTCCAAAGGTTGCAGCG 59.729 47.619 0.65 0.00 0.00 5.18
668 5008 1.717791 CGGCCGTGTGATTCATGCAT 61.718 55.000 19.50 0.00 0.00 3.96
669 5009 2.397754 CGGCCGTGTGATTCATGCA 61.398 57.895 19.50 0.00 0.00 3.96
737 5078 3.390639 AGCTAGCTGATTGATGGCTTAGT 59.609 43.478 18.57 0.00 46.61 2.24
783 5124 1.076485 ATGTCCCAGGCTGCCAATC 60.076 57.895 22.65 6.91 0.00 2.67
801 5176 4.211125 TCCATTAAGTCACAAAAGGCACA 58.789 39.130 0.00 0.00 0.00 4.57
838 5216 4.900635 AAGAATGTTGACAGTGGACAAC 57.099 40.909 20.73 20.73 45.68 3.32
937 5340 3.129113 TGCTCATGTCCCGATCAAATTTG 59.871 43.478 12.15 12.15 0.00 2.32
966 5388 7.010645 TGAGCATGCAAATAACATTATTGCAAG 59.989 33.333 21.98 12.35 38.88 4.01
971 5393 9.090692 GAAGTTGAGCATGCAAATAACATTATT 57.909 29.630 21.98 8.85 34.98 1.40
972 5394 7.707893 GGAAGTTGAGCATGCAAATAACATTAT 59.292 33.333 21.98 6.98 0.00 1.28
973 5395 7.035004 GGAAGTTGAGCATGCAAATAACATTA 58.965 34.615 21.98 0.00 0.00 1.90
981 5403 1.266718 GTCGGAAGTTGAGCATGCAAA 59.733 47.619 21.98 11.20 0.00 3.68
993 5415 5.588648 CCAATGGTGTATTTATGTCGGAAGT 59.411 40.000 0.00 0.00 0.00 3.01
1019 5442 0.606401 CATGGGCTTTGTCGTGAGGT 60.606 55.000 0.00 0.00 0.00 3.85
1025 5448 1.033746 ATGAGGCATGGGCTTTGTCG 61.034 55.000 0.00 0.00 38.98 4.35
1108 5550 3.314541 TGGAAACGAGTAAGAAGCTCC 57.685 47.619 0.00 0.00 0.00 4.70
1109 5553 4.929808 TGAATGGAAACGAGTAAGAAGCTC 59.070 41.667 0.00 0.00 0.00 4.09
1120 5564 3.609853 AGCTGCTTATGAATGGAAACGA 58.390 40.909 0.00 0.00 0.00 3.85
1125 5583 1.811558 GCCGAGCTGCTTATGAATGGA 60.812 52.381 2.53 0.00 0.00 3.41
1126 5584 0.590195 GCCGAGCTGCTTATGAATGG 59.410 55.000 2.53 0.00 0.00 3.16
1127 5585 1.590932 AGCCGAGCTGCTTATGAATG 58.409 50.000 2.53 0.00 38.85 2.67
1128 5586 2.548920 GGTAGCCGAGCTGCTTATGAAT 60.549 50.000 2.53 0.00 42.75 2.57
1129 5587 1.202533 GGTAGCCGAGCTGCTTATGAA 60.203 52.381 2.53 0.00 42.75 2.57
1130 5588 0.389391 GGTAGCCGAGCTGCTTATGA 59.611 55.000 2.53 0.00 42.75 2.15
1131 5589 0.601311 GGGTAGCCGAGCTGCTTATG 60.601 60.000 2.53 0.00 42.75 1.90
1132 5590 1.749033 GGGTAGCCGAGCTGCTTAT 59.251 57.895 2.53 0.00 42.75 1.73
1133 5591 2.432300 GGGGTAGCCGAGCTGCTTA 61.432 63.158 2.53 0.00 42.75 3.09
1144 5602 2.802719 TCATCTTTGTTTGGGGGTAGC 58.197 47.619 0.00 0.00 0.00 3.58
1146 5604 4.733077 TCTTCATCTTTGTTTGGGGGTA 57.267 40.909 0.00 0.00 0.00 3.69
1147 5605 3.611025 TCTTCATCTTTGTTTGGGGGT 57.389 42.857 0.00 0.00 0.00 4.95
1151 5611 4.009675 TCCCGATCTTCATCTTTGTTTGG 58.990 43.478 0.00 0.00 0.00 3.28
1235 5711 3.092511 GGGATGAGGAGCCTGGCA 61.093 66.667 22.65 0.00 0.00 4.92
1338 5814 0.465460 AGAGCTTTGTGGCGGTCAAA 60.465 50.000 0.00 3.24 37.29 2.69
1362 5838 0.318699 CTCTTCTCGACCGTGCACAA 60.319 55.000 18.64 0.14 0.00 3.33
1365 5841 1.579932 GTCTCTTCTCGACCGTGCA 59.420 57.895 0.00 0.00 0.00 4.57
1741 6230 6.206829 CCTAAAAGAAAGACAACACCCTAAGG 59.793 42.308 0.00 0.00 40.04 2.69
1797 6289 6.616947 CCTCAAATCCTACTCGATCATACTC 58.383 44.000 0.00 0.00 0.00 2.59
1799 6291 5.047660 AGCCTCAAATCCTACTCGATCATAC 60.048 44.000 0.00 0.00 0.00 2.39
1815 6307 4.998671 TCATTGTTTGTCAAGCCTCAAA 57.001 36.364 0.00 0.00 39.55 2.69
1907 6400 0.034767 CAATGGCAGAAGGGAGCTGA 60.035 55.000 0.00 0.00 35.39 4.26
1920 6413 4.740431 GTGGTTGGGCGCAATGGC 62.740 66.667 19.93 6.76 43.88 4.40
1947 6440 5.308014 TGCATATATACAGTGGGCTTTCTG 58.692 41.667 0.00 0.00 37.65 3.02
1978 6471 0.831288 TGGAAGTGCCCCCATTTGTG 60.831 55.000 0.00 0.00 34.97 3.33
2005 6498 2.959030 AGAGAAAGAAAACACAAGGGCC 59.041 45.455 0.00 0.00 0.00 5.80
2006 6499 4.363138 CAAGAGAAAGAAAACACAAGGGC 58.637 43.478 0.00 0.00 0.00 5.19
2007 6500 4.644685 TCCAAGAGAAAGAAAACACAAGGG 59.355 41.667 0.00 0.00 0.00 3.95
2008 6501 5.835113 TCCAAGAGAAAGAAAACACAAGG 57.165 39.130 0.00 0.00 0.00 3.61
2009 6502 6.856895 ACTTCCAAGAGAAAGAAAACACAAG 58.143 36.000 0.00 0.00 32.88 3.16
2028 6576 7.876068 CCTTTGGTAAAAATTTTAGGGACTTCC 59.124 37.037 3.34 0.00 41.75 3.46
2042 6897 9.163899 GTAAATTGTGGAAACCTTTGGTAAAAA 57.836 29.630 0.00 0.00 33.12 1.94
2053 6908 5.006261 GCAACTTGTGTAAATTGTGGAAACC 59.994 40.000 0.00 0.00 0.00 3.27
2054 6909 5.578727 TGCAACTTGTGTAAATTGTGGAAAC 59.421 36.000 0.00 0.00 0.00 2.78
2055 6910 5.724328 TGCAACTTGTGTAAATTGTGGAAA 58.276 33.333 0.00 0.00 0.00 3.13
2056 6911 5.330455 TGCAACTTGTGTAAATTGTGGAA 57.670 34.783 0.00 0.00 0.00 3.53
2058 6913 5.531634 AGATGCAACTTGTGTAAATTGTGG 58.468 37.500 0.00 0.00 0.00 4.17
2070 6925 4.807304 GGCATATTTGGAAGATGCAACTTG 59.193 41.667 14.60 0.00 46.29 3.16
2084 6939 0.319211 CCATGGCAGCGGCATATTTG 60.319 55.000 11.88 4.12 47.00 2.32
2087 6942 2.987547 GCCATGGCAGCGGCATAT 60.988 61.111 32.08 1.29 47.00 1.78
2153 7012 1.676967 GGAGCAGCAAACCTCTGGG 60.677 63.158 0.00 0.00 38.88 4.45
2161 7020 1.375908 CAGTAGCCGGAGCAGCAAA 60.376 57.895 5.05 0.00 43.56 3.68
2162 7021 2.265739 CAGTAGCCGGAGCAGCAA 59.734 61.111 5.05 0.00 43.56 3.91
2189 7048 3.355378 TGCATTTGTGTATTCCAGAGGG 58.645 45.455 0.00 0.00 0.00 4.30
2194 7054 6.649973 CCTGAAATTTGCATTTGTGTATTCCA 59.350 34.615 0.00 0.00 32.35 3.53
2201 7061 3.058450 TCGCCTGAAATTTGCATTTGTG 58.942 40.909 0.00 0.00 32.35 3.33
2209 7069 2.420628 TGCAAGTCGCCTGAAATTTG 57.579 45.000 0.00 0.00 41.33 2.32
2305 7495 2.793278 ATCACAAAACTTTCCCGTGC 57.207 45.000 0.00 0.00 0.00 5.34
2306 7496 3.566322 TGGTATCACAAAACTTTCCCGTG 59.434 43.478 0.00 0.00 0.00 4.94
2307 7497 3.822940 TGGTATCACAAAACTTTCCCGT 58.177 40.909 0.00 0.00 0.00 5.28
2308 7498 4.320935 CCTTGGTATCACAAAACTTTCCCG 60.321 45.833 0.00 0.00 0.00 5.14
2310 7500 5.784578 ACCTTGGTATCACAAAACTTTCC 57.215 39.130 0.00 0.00 0.00 3.13
2311 7501 7.865889 CCTAAACCTTGGTATCACAAAACTTTC 59.134 37.037 0.00 0.00 0.00 2.62
2312 7502 7.343574 ACCTAAACCTTGGTATCACAAAACTTT 59.656 33.333 0.00 0.00 34.36 2.66
2313 7503 6.837048 ACCTAAACCTTGGTATCACAAAACTT 59.163 34.615 0.00 0.00 34.36 2.66
2314 7504 6.264518 CACCTAAACCTTGGTATCACAAAACT 59.735 38.462 0.00 0.00 34.79 2.66
2315 7505 6.263617 TCACCTAAACCTTGGTATCACAAAAC 59.736 38.462 0.00 0.00 34.79 2.43
2316 7506 6.366340 TCACCTAAACCTTGGTATCACAAAA 58.634 36.000 0.00 0.00 34.79 2.44
2317 7507 5.942961 TCACCTAAACCTTGGTATCACAAA 58.057 37.500 0.00 0.00 34.79 2.83
2318 7508 5.570205 TCACCTAAACCTTGGTATCACAA 57.430 39.130 0.00 0.00 34.79 3.33
2319 7509 5.772393 ATCACCTAAACCTTGGTATCACA 57.228 39.130 0.00 0.00 34.79 3.58
2320 7510 6.053650 GGTATCACCTAAACCTTGGTATCAC 58.946 44.000 0.00 0.00 34.73 3.06
2321 7511 5.163385 CGGTATCACCTAAACCTTGGTATCA 60.163 44.000 0.00 0.00 35.66 2.15
2323 7513 4.718276 ACGGTATCACCTAAACCTTGGTAT 59.282 41.667 0.00 0.00 35.66 2.73
2324 7514 4.081531 CACGGTATCACCTAAACCTTGGTA 60.082 45.833 0.00 0.00 35.66 3.25
2325 7515 2.908351 ACGGTATCACCTAAACCTTGGT 59.092 45.455 0.00 0.00 35.66 3.67
2327 7517 4.196626 TCACGGTATCACCTAAACCTTG 57.803 45.455 0.00 0.00 35.66 3.61
2330 7520 4.293415 CGTATCACGGTATCACCTAAACC 58.707 47.826 0.00 0.00 38.08 3.27
2344 7534 1.227263 CCCAGAAGCCCGTATCACG 60.227 63.158 0.00 0.00 42.11 4.35
2345 7535 1.523938 GCCCAGAAGCCCGTATCAC 60.524 63.158 0.00 0.00 0.00 3.06
2346 7536 2.908015 GCCCAGAAGCCCGTATCA 59.092 61.111 0.00 0.00 0.00 2.15
2354 7544 2.044946 ATCCAACGGCCCAGAAGC 60.045 61.111 0.00 0.00 0.00 3.86
2355 7545 0.462759 GAGATCCAACGGCCCAGAAG 60.463 60.000 0.00 0.00 0.00 2.85
2356 7546 1.198094 TGAGATCCAACGGCCCAGAA 61.198 55.000 0.00 0.00 0.00 3.02
2357 7547 1.198094 TTGAGATCCAACGGCCCAGA 61.198 55.000 0.00 0.00 0.00 3.86
2358 7548 0.322456 TTTGAGATCCAACGGCCCAG 60.322 55.000 0.00 0.00 33.85 4.45
2359 7549 0.331278 ATTTGAGATCCAACGGCCCA 59.669 50.000 0.00 0.00 33.85 5.36
2360 7550 1.025041 GATTTGAGATCCAACGGCCC 58.975 55.000 0.00 0.00 33.85 5.80
2361 7551 2.044123 AGATTTGAGATCCAACGGCC 57.956 50.000 0.00 0.00 33.85 6.13
2362 7552 3.938963 TGTTAGATTTGAGATCCAACGGC 59.061 43.478 0.00 0.00 33.85 5.68
2363 7553 5.178797 ACTGTTAGATTTGAGATCCAACGG 58.821 41.667 2.45 2.45 33.99 4.44
2364 7554 7.923344 AGATACTGTTAGATTTGAGATCCAACG 59.077 37.037 0.00 0.00 33.85 4.10
2365 7555 9.039870 CAGATACTGTTAGATTTGAGATCCAAC 57.960 37.037 0.00 0.00 33.85 3.77
2366 7556 8.981659 TCAGATACTGTTAGATTTGAGATCCAA 58.018 33.333 0.00 0.00 32.61 3.53
2367 7557 8.539117 TCAGATACTGTTAGATTTGAGATCCA 57.461 34.615 0.00 0.00 32.61 3.41
2368 7558 8.087750 CCTCAGATACTGTTAGATTTGAGATCC 58.912 40.741 9.81 0.00 34.27 3.36
2369 7559 8.855110 TCCTCAGATACTGTTAGATTTGAGATC 58.145 37.037 9.81 0.00 34.27 2.75
2370 7560 8.774546 TCCTCAGATACTGTTAGATTTGAGAT 57.225 34.615 9.81 0.00 34.27 2.75
2371 7561 7.201866 GCTCCTCAGATACTGTTAGATTTGAGA 60.202 40.741 9.81 0.00 34.27 3.27
2372 7562 6.922957 GCTCCTCAGATACTGTTAGATTTGAG 59.077 42.308 0.00 3.72 32.61 3.02
2373 7563 6.183360 GGCTCCTCAGATACTGTTAGATTTGA 60.183 42.308 0.00 0.00 32.61 2.69
2374 7564 5.988561 GGCTCCTCAGATACTGTTAGATTTG 59.011 44.000 0.00 0.00 32.61 2.32
2375 7565 5.071115 GGGCTCCTCAGATACTGTTAGATTT 59.929 44.000 0.00 0.00 32.61 2.17
2376 7566 4.591072 GGGCTCCTCAGATACTGTTAGATT 59.409 45.833 0.00 0.00 32.61 2.40
2377 7567 4.140805 AGGGCTCCTCAGATACTGTTAGAT 60.141 45.833 0.00 0.00 32.61 1.98
2378 7568 3.205507 AGGGCTCCTCAGATACTGTTAGA 59.794 47.826 0.00 0.00 32.61 2.10
2379 7569 3.571590 AGGGCTCCTCAGATACTGTTAG 58.428 50.000 0.00 0.00 32.61 2.34
2380 7570 3.689872 AGGGCTCCTCAGATACTGTTA 57.310 47.619 0.00 0.00 32.61 2.41
2381 7571 2.503356 CAAGGGCTCCTCAGATACTGTT 59.497 50.000 0.00 0.00 30.89 3.16
2382 7572 2.114616 CAAGGGCTCCTCAGATACTGT 58.885 52.381 0.00 0.00 30.89 3.55
2383 7573 2.114616 ACAAGGGCTCCTCAGATACTG 58.885 52.381 0.00 0.00 30.89 2.74
2384 7574 2.559381 ACAAGGGCTCCTCAGATACT 57.441 50.000 0.00 0.00 30.89 2.12
2385 7575 2.365941 GGTACAAGGGCTCCTCAGATAC 59.634 54.545 0.00 0.00 30.89 2.24
2386 7576 2.247635 AGGTACAAGGGCTCCTCAGATA 59.752 50.000 0.00 0.00 30.89 1.98
2387 7577 1.008938 AGGTACAAGGGCTCCTCAGAT 59.991 52.381 0.00 0.00 30.89 2.90
2388 7578 0.413832 AGGTACAAGGGCTCCTCAGA 59.586 55.000 0.00 0.00 30.89 3.27
2389 7579 0.539051 CAGGTACAAGGGCTCCTCAG 59.461 60.000 0.00 0.00 30.89 3.35
2390 7580 1.553690 GCAGGTACAAGGGCTCCTCA 61.554 60.000 0.00 0.00 30.89 3.86
2391 7581 1.222113 GCAGGTACAAGGGCTCCTC 59.778 63.158 0.00 0.00 30.89 3.71
2392 7582 2.660064 CGCAGGTACAAGGGCTCCT 61.660 63.158 0.00 0.00 33.87 3.69
2393 7583 2.125106 CGCAGGTACAAGGGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
2394 7584 2.820037 GCGCAGGTACAAGGGCTC 60.820 66.667 0.30 0.00 40.28 4.70
2395 7585 4.760047 CGCGCAGGTACAAGGGCT 62.760 66.667 8.75 0.00 40.98 5.19
2396 7586 3.652539 TACGCGCAGGTACAAGGGC 62.653 63.158 5.73 13.52 40.10 5.19
2397 7587 0.461339 ATTACGCGCAGGTACAAGGG 60.461 55.000 5.73 0.00 0.00 3.95
2398 7588 1.365699 AATTACGCGCAGGTACAAGG 58.634 50.000 5.73 0.00 0.00 3.61
2399 7589 3.465122 AAAATTACGCGCAGGTACAAG 57.535 42.857 5.73 0.00 0.00 3.16
2400 7590 4.689812 TCTTAAAATTACGCGCAGGTACAA 59.310 37.500 5.73 0.00 0.00 2.41
2401 7591 4.091800 GTCTTAAAATTACGCGCAGGTACA 59.908 41.667 5.73 0.00 0.00 2.90
2402 7592 4.328169 AGTCTTAAAATTACGCGCAGGTAC 59.672 41.667 5.73 0.00 0.00 3.34
2403 7593 4.497300 AGTCTTAAAATTACGCGCAGGTA 58.503 39.130 5.73 0.00 0.00 3.08
2404 7594 3.332034 AGTCTTAAAATTACGCGCAGGT 58.668 40.909 5.73 0.00 0.00 4.00
2405 7595 4.336532 AAGTCTTAAAATTACGCGCAGG 57.663 40.909 5.73 0.00 0.00 4.85
2416 7606 8.200792 TGCAAAAGCTATCCAAAAGTCTTAAAA 58.799 29.630 0.00 0.00 0.00 1.52
2417 7607 7.721402 TGCAAAAGCTATCCAAAAGTCTTAAA 58.279 30.769 0.00 0.00 0.00 1.52
2418 7608 7.283625 TGCAAAAGCTATCCAAAAGTCTTAA 57.716 32.000 0.00 0.00 0.00 1.85
2419 7609 6.892658 TGCAAAAGCTATCCAAAAGTCTTA 57.107 33.333 0.00 0.00 0.00 2.10
2420 7610 5.789643 TGCAAAAGCTATCCAAAAGTCTT 57.210 34.783 0.00 0.00 0.00 3.01
2421 7611 5.789643 TTGCAAAAGCTATCCAAAAGTCT 57.210 34.783 0.00 0.00 0.00 3.24
2423 7613 6.767423 ACATTTTGCAAAAGCTATCCAAAAGT 59.233 30.769 27.08 5.49 38.35 2.66
2424 7614 7.193377 ACATTTTGCAAAAGCTATCCAAAAG 57.807 32.000 27.08 2.75 38.35 2.27
2427 7617 6.202570 GTGAACATTTTGCAAAAGCTATCCAA 59.797 34.615 27.08 3.89 0.00 3.53
2428 7618 5.695816 GTGAACATTTTGCAAAAGCTATCCA 59.304 36.000 27.08 16.94 0.00 3.41
2429 7619 5.695816 TGTGAACATTTTGCAAAAGCTATCC 59.304 36.000 27.08 14.98 0.00 2.59
2431 7621 6.985645 TCTTGTGAACATTTTGCAAAAGCTAT 59.014 30.769 27.08 14.57 29.10 2.97
2432 7622 6.336566 TCTTGTGAACATTTTGCAAAAGCTA 58.663 32.000 27.08 7.24 29.10 3.32
2433 7623 5.177326 TCTTGTGAACATTTTGCAAAAGCT 58.823 33.333 27.08 15.11 29.10 3.74
2436 7626 5.177326 AGCTCTTGTGAACATTTTGCAAAA 58.823 33.333 25.76 25.76 0.00 2.44
2437 7627 4.757594 AGCTCTTGTGAACATTTTGCAAA 58.242 34.783 8.05 8.05 0.00 3.68
2438 7628 4.142204 TGAGCTCTTGTGAACATTTTGCAA 60.142 37.500 16.19 0.00 0.00 4.08
2440 7630 3.732721 GTGAGCTCTTGTGAACATTTTGC 59.267 43.478 16.19 0.00 0.00 3.68
2441 7631 3.970610 CGTGAGCTCTTGTGAACATTTTG 59.029 43.478 16.19 0.00 0.00 2.44
2442 7632 3.003689 CCGTGAGCTCTTGTGAACATTTT 59.996 43.478 16.19 0.00 0.00 1.82
2443 7633 2.549754 CCGTGAGCTCTTGTGAACATTT 59.450 45.455 16.19 0.00 0.00 2.32
2444 7634 2.146342 CCGTGAGCTCTTGTGAACATT 58.854 47.619 16.19 0.00 0.00 2.71
2445 7635 1.609061 CCCGTGAGCTCTTGTGAACAT 60.609 52.381 16.19 0.00 0.00 2.71
2446 7636 0.249868 CCCGTGAGCTCTTGTGAACA 60.250 55.000 16.19 0.00 0.00 3.18
2447 7637 0.033504 TCCCGTGAGCTCTTGTGAAC 59.966 55.000 16.19 2.20 0.00 3.18
2474 10656 4.536765 GGGAAATGTCAGGTCATACCAAT 58.463 43.478 0.00 0.00 41.95 3.16
2476 10658 2.241176 GGGGAAATGTCAGGTCATACCA 59.759 50.000 0.00 0.00 41.95 3.25
2477 10659 2.509964 AGGGGAAATGTCAGGTCATACC 59.490 50.000 0.00 0.00 38.99 2.73
2478 10660 3.545703 CAGGGGAAATGTCAGGTCATAC 58.454 50.000 0.00 0.00 0.00 2.39
2479 10661 2.092429 GCAGGGGAAATGTCAGGTCATA 60.092 50.000 0.00 0.00 0.00 2.15
2480 10662 1.341383 GCAGGGGAAATGTCAGGTCAT 60.341 52.381 0.00 0.00 0.00 3.06
2481 10663 0.038166 GCAGGGGAAATGTCAGGTCA 59.962 55.000 0.00 0.00 0.00 4.02
2484 10666 0.040204 AAGGCAGGGGAAATGTCAGG 59.960 55.000 0.00 0.00 0.00 3.86
2485 10667 1.180029 CAAGGCAGGGGAAATGTCAG 58.820 55.000 0.00 0.00 0.00 3.51
2486 10668 0.899717 GCAAGGCAGGGGAAATGTCA 60.900 55.000 0.00 0.00 0.00 3.58
2487 10669 0.899717 TGCAAGGCAGGGGAAATGTC 60.900 55.000 0.00 0.00 33.32 3.06
2488 10670 1.155859 TGCAAGGCAGGGGAAATGT 59.844 52.632 0.00 0.00 33.32 2.71
2489 10671 1.186917 TGTGCAAGGCAGGGGAAATG 61.187 55.000 0.00 0.00 40.08 2.32
2490 10672 0.901580 CTGTGCAAGGCAGGGGAAAT 60.902 55.000 0.00 0.00 40.08 2.17
2491 10673 1.531365 CTGTGCAAGGCAGGGGAAA 60.531 57.895 0.00 0.00 40.08 3.13
2492 10674 2.115910 CTGTGCAAGGCAGGGGAA 59.884 61.111 0.00 0.00 40.08 3.97
2493 10675 4.666253 GCTGTGCAAGGCAGGGGA 62.666 66.667 5.10 0.00 40.08 4.81
2500 10682 3.490759 CTACCGCGCTGTGCAAGG 61.491 66.667 15.24 9.62 46.97 3.61
2501 10683 3.490759 CCTACCGCGCTGTGCAAG 61.491 66.667 15.24 3.99 46.97 4.01
2502 10684 4.308458 ACCTACCGCGCTGTGCAA 62.308 61.111 15.24 0.00 46.97 4.08
2505 10687 4.373116 ACCACCTACCGCGCTGTG 62.373 66.667 15.24 9.00 0.00 3.66
2520 11025 2.032681 GAGATATGGCCCGGCACC 59.967 66.667 12.58 0.00 0.00 5.01
2664 11169 3.391382 CCGGTGGTGGAGGAGGAC 61.391 72.222 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.