Multiple sequence alignment - TraesCS5D01G301800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G301800 chr5D 100.000 2540 0 0 1 2540 398463820 398466359 0.000000e+00 4691
1 TraesCS5D01G301800 chr5D 80.140 1576 211 52 184 1723 398434248 398435757 0.000000e+00 1083
2 TraesCS5D01G301800 chr5D 83.186 1130 130 32 633 1724 398482727 398483834 0.000000e+00 979
3 TraesCS5D01G301800 chr5D 80.569 211 38 2 2276 2486 398243622 398243829 2.620000e-35 159
4 TraesCS5D01G301800 chr5A 86.383 1836 178 28 151 1947 503485035 503486837 0.000000e+00 1940
5 TraesCS5D01G301800 chr5A 89.378 1431 127 12 254 1668 503438842 503440263 0.000000e+00 1777
6 TraesCS5D01G301800 chr5A 84.369 1062 124 22 696 1727 503492713 503493762 0.000000e+00 1003
7 TraesCS5D01G301800 chr5A 78.040 551 90 20 2008 2538 503486875 503487414 4.080000e-83 318
8 TraesCS5D01G301800 chr5A 82.899 345 38 11 2031 2360 503442111 503442449 8.890000e-75 291
9 TraesCS5D01G301800 chr5A 88.021 192 13 5 2356 2540 503466973 503467161 4.250000e-53 219
10 TraesCS5D01G301800 chr5B 81.930 2363 286 64 240 2540 478425158 478427441 0.000000e+00 1868
11 TraesCS5D01G301800 chr5B 85.325 1247 157 15 483 1713 478404416 478405652 0.000000e+00 1266
12 TraesCS5D01G301800 chr5B 83.475 1059 124 24 696 1713 478430774 478431822 0.000000e+00 939
13 TraesCS5D01G301800 chr5B 89.744 234 16 4 254 484 478403798 478404026 2.470000e-75 292
14 TraesCS5D01G301800 chrUn 94.702 151 7 1 1 150 45317225 45317075 1.520000e-57 233
15 TraesCS5D01G301800 chrUn 94.702 151 7 1 1 150 45359977 45359827 1.520000e-57 233
16 TraesCS5D01G301800 chrUn 94.040 151 8 1 1 150 45337102 45336952 7.070000e-56 228
17 TraesCS5D01G301800 chr6D 94.702 151 7 1 1 150 460777092 460777242 1.520000e-57 233
18 TraesCS5D01G301800 chr6D 92.949 156 10 1 1 155 46622895 46623050 2.540000e-55 226
19 TraesCS5D01G301800 chr2D 94.702 151 7 1 1 150 623768641 623768491 1.520000e-57 233
20 TraesCS5D01G301800 chr1D 94.702 151 7 1 1 150 83904200 83904050 1.520000e-57 233
21 TraesCS5D01G301800 chr1D 92.169 166 11 2 1 165 453824014 453823850 1.520000e-57 233
22 TraesCS5D01G301800 chr1D 92.903 155 9 2 4 157 468375607 468375454 9.140000e-55 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G301800 chr5D 398463820 398466359 2539 False 4691.0 4691 100.0000 1 2540 1 chr5D.!!$F3 2539
1 TraesCS5D01G301800 chr5D 398434248 398435757 1509 False 1083.0 1083 80.1400 184 1723 1 chr5D.!!$F2 1539
2 TraesCS5D01G301800 chr5D 398482727 398483834 1107 False 979.0 979 83.1860 633 1724 1 chr5D.!!$F4 1091
3 TraesCS5D01G301800 chr5A 503485035 503487414 2379 False 1129.0 1940 82.2115 151 2538 2 chr5A.!!$F4 2387
4 TraesCS5D01G301800 chr5A 503438842 503442449 3607 False 1034.0 1777 86.1385 254 2360 2 chr5A.!!$F3 2106
5 TraesCS5D01G301800 chr5A 503492713 503493762 1049 False 1003.0 1003 84.3690 696 1727 1 chr5A.!!$F2 1031
6 TraesCS5D01G301800 chr5B 478425158 478431822 6664 False 1403.5 1868 82.7025 240 2540 2 chr5B.!!$F2 2300
7 TraesCS5D01G301800 chr5B 478403798 478405652 1854 False 779.0 1266 87.5345 254 1713 2 chr5B.!!$F1 1459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.039256 TCGTGGTAGGACCGTTTTCG 60.039 55.0 0.0 0.0 42.58 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 4039 0.035458 AAAGGGAAGCCGAGTGTCTG 59.965 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.944372 GCCGTGGGCGTAGATCGG 62.944 72.222 0.00 0.00 39.62 4.18
29 30 3.524606 CCGTGGGCGTAGATCGGT 61.525 66.667 0.00 0.00 40.26 4.69
30 31 2.278596 CGTGGGCGTAGATCGGTG 60.279 66.667 0.00 0.00 40.26 4.94
31 32 2.890371 GTGGGCGTAGATCGGTGT 59.110 61.111 0.00 0.00 40.26 4.16
32 33 1.717791 CGTGGGCGTAGATCGGTGTA 61.718 60.000 0.00 0.00 40.26 2.90
33 34 0.457035 GTGGGCGTAGATCGGTGTAA 59.543 55.000 0.00 0.00 40.26 2.41
34 35 0.457035 TGGGCGTAGATCGGTGTAAC 59.543 55.000 0.00 0.00 40.26 2.50
45 46 2.433664 GTGTAACCCGACGGCCAG 60.434 66.667 8.86 0.00 0.00 4.85
46 47 3.697747 TGTAACCCGACGGCCAGG 61.698 66.667 8.86 2.16 0.00 4.45
47 48 3.384532 GTAACCCGACGGCCAGGA 61.385 66.667 8.86 0.00 0.00 3.86
48 49 2.364579 TAACCCGACGGCCAGGAT 60.365 61.111 8.86 0.00 0.00 3.24
49 50 1.076118 TAACCCGACGGCCAGGATA 60.076 57.895 8.86 0.00 0.00 2.59
50 51 0.687098 TAACCCGACGGCCAGGATAA 60.687 55.000 8.86 0.00 0.00 1.75
51 52 1.968050 AACCCGACGGCCAGGATAAG 61.968 60.000 8.86 0.00 0.00 1.73
52 53 2.280186 CCGACGGCCAGGATAAGC 60.280 66.667 2.24 0.00 0.00 3.09
53 54 2.280186 CGACGGCCAGGATAAGCC 60.280 66.667 2.24 0.00 46.17 4.35
57 58 2.280186 GGCCAGGATAAGCCGACG 60.280 66.667 0.00 0.00 43.43 5.12
58 59 2.280186 GCCAGGATAAGCCGACGG 60.280 66.667 10.29 10.29 43.43 4.79
76 77 4.087892 CCAGGACTGGGCTGTCGG 62.088 72.222 10.55 0.05 46.81 4.79
77 78 4.767255 CAGGACTGGGCTGTCGGC 62.767 72.222 0.00 0.00 37.81 5.54
79 80 4.101448 GGACTGGGCTGTCGGCAT 62.101 66.667 5.89 0.00 44.01 4.40
80 81 2.731571 GGACTGGGCTGTCGGCATA 61.732 63.158 5.89 0.00 44.01 3.14
81 82 1.227380 GACTGGGCTGTCGGCATAG 60.227 63.158 5.89 5.47 44.01 2.23
82 83 2.590007 CTGGGCTGTCGGCATAGC 60.590 66.667 5.89 0.00 44.01 2.97
83 84 3.083349 TGGGCTGTCGGCATAGCT 61.083 61.111 5.89 0.00 44.01 3.32
84 85 2.280457 GGGCTGTCGGCATAGCTC 60.280 66.667 5.89 0.00 44.01 4.09
85 86 2.280457 GGCTGTCGGCATAGCTCC 60.280 66.667 5.89 0.00 44.01 4.70
86 87 2.501128 GCTGTCGGCATAGCTCCA 59.499 61.111 0.00 0.00 41.35 3.86
87 88 1.153369 GCTGTCGGCATAGCTCCAA 60.153 57.895 0.00 0.00 41.35 3.53
88 89 1.432270 GCTGTCGGCATAGCTCCAAC 61.432 60.000 0.00 0.00 41.35 3.77
89 90 0.176680 CTGTCGGCATAGCTCCAACT 59.823 55.000 0.00 0.00 0.00 3.16
90 91 1.409064 CTGTCGGCATAGCTCCAACTA 59.591 52.381 0.00 0.00 0.00 2.24
91 92 1.409064 TGTCGGCATAGCTCCAACTAG 59.591 52.381 0.00 0.00 0.00 2.57
92 93 1.040646 TCGGCATAGCTCCAACTAGG 58.959 55.000 0.00 0.00 39.47 3.02
93 94 0.601311 CGGCATAGCTCCAACTAGGC 60.601 60.000 0.00 0.00 46.47 3.93
94 95 3.314083 GCATAGCTCCAACTAGGCC 57.686 57.895 0.00 0.00 42.58 5.19
95 96 0.601311 GCATAGCTCCAACTAGGCCG 60.601 60.000 0.00 0.00 42.58 6.13
96 97 1.040646 CATAGCTCCAACTAGGCCGA 58.959 55.000 0.00 0.00 37.29 5.54
97 98 1.041437 ATAGCTCCAACTAGGCCGAC 58.959 55.000 0.00 0.00 37.29 4.79
98 99 1.381928 TAGCTCCAACTAGGCCGACG 61.382 60.000 0.00 0.00 37.29 5.12
99 100 2.494918 CTCCAACTAGGCCGACGG 59.505 66.667 10.29 10.29 37.29 4.79
121 122 2.702847 CCGTAGGCATAGGTTTGGC 58.297 57.895 0.00 0.00 46.14 4.52
122 123 0.818040 CCGTAGGCATAGGTTTGGCC 60.818 60.000 0.00 0.00 46.14 5.36
125 126 3.509659 GGCATAGGTTTGGCCGTC 58.490 61.111 0.00 0.00 43.70 4.79
126 127 2.469516 GGCATAGGTTTGGCCGTCG 61.470 63.158 0.00 0.00 43.70 5.12
127 128 1.743995 GCATAGGTTTGGCCGTCGT 60.744 57.895 0.00 0.00 43.70 4.34
128 129 1.977594 GCATAGGTTTGGCCGTCGTG 61.978 60.000 0.00 0.00 43.70 4.35
129 130 1.078708 ATAGGTTTGGCCGTCGTGG 60.079 57.895 0.00 0.00 43.70 4.94
130 131 1.833787 ATAGGTTTGGCCGTCGTGGT 61.834 55.000 0.00 0.00 43.70 4.16
131 132 1.184322 TAGGTTTGGCCGTCGTGGTA 61.184 55.000 0.00 0.00 43.70 3.25
132 133 2.030958 GGTTTGGCCGTCGTGGTAG 61.031 63.158 0.00 0.00 41.21 3.18
133 134 2.030958 GTTTGGCCGTCGTGGTAGG 61.031 63.158 0.00 0.00 41.21 3.18
134 135 2.208619 TTTGGCCGTCGTGGTAGGA 61.209 57.895 0.00 0.00 41.21 2.94
135 136 2.438951 TTTGGCCGTCGTGGTAGGAC 62.439 60.000 0.00 0.00 41.21 3.85
136 137 4.139234 GGCCGTCGTGGTAGGACC 62.139 72.222 0.00 0.00 41.21 4.46
137 138 4.487412 GCCGTCGTGGTAGGACCG 62.487 72.222 0.00 0.00 42.58 4.79
138 139 3.058160 CCGTCGTGGTAGGACCGT 61.058 66.667 0.00 0.00 42.58 4.83
139 140 2.629656 CCGTCGTGGTAGGACCGTT 61.630 63.158 0.00 0.00 42.58 4.44
140 141 1.286880 CGTCGTGGTAGGACCGTTT 59.713 57.895 0.00 0.00 42.58 3.60
141 142 0.318955 CGTCGTGGTAGGACCGTTTT 60.319 55.000 0.00 0.00 42.58 2.43
142 143 1.422388 GTCGTGGTAGGACCGTTTTC 58.578 55.000 0.00 0.00 42.58 2.29
143 144 0.039256 TCGTGGTAGGACCGTTTTCG 60.039 55.000 0.00 0.00 42.58 3.46
157 158 0.938713 TTTTCGGTAGTGCACGGTTG 59.061 50.000 12.01 3.47 0.00 3.77
265 266 4.715534 TCCATAAAGGTGTTTGGAGACA 57.284 40.909 0.00 0.00 39.02 3.41
400 407 1.857965 TGCAGATCTCACCTACAGCT 58.142 50.000 0.00 0.00 0.00 4.24
401 408 3.018423 TGCAGATCTCACCTACAGCTA 57.982 47.619 0.00 0.00 0.00 3.32
402 409 2.954989 TGCAGATCTCACCTACAGCTAG 59.045 50.000 0.00 0.00 0.00 3.42
403 410 2.288152 GCAGATCTCACCTACAGCTAGC 60.288 54.545 6.62 6.62 0.00 3.42
550 963 5.184711 GGCAAAATTATTCCAAGCCATCAA 58.815 37.500 0.00 0.00 40.29 2.57
554 967 7.254658 GCAAAATTATTCCAAGCCATCAATCAG 60.255 37.037 0.00 0.00 0.00 2.90
555 968 7.427989 AAATTATTCCAAGCCATCAATCAGT 57.572 32.000 0.00 0.00 0.00 3.41
556 969 7.427989 AATTATTCCAAGCCATCAATCAGTT 57.572 32.000 0.00 0.00 0.00 3.16
571 984 3.762407 TCAGTTGCTAGCTTTACCACA 57.238 42.857 17.23 0.00 0.00 4.17
584 997 5.358160 AGCTTTACCACATGATTAAAGGAGC 59.642 40.000 18.52 10.73 34.64 4.70
618 1031 1.544703 GGACCCCAACCCAAAAGGA 59.455 57.895 0.00 0.00 39.89 3.36
699 1112 5.888161 CCATAAGTTCCTTGCTTAGTTCCAT 59.112 40.000 0.00 0.00 32.72 3.41
714 1127 7.327032 GCTTAGTTCCATTGTCAACATTCTTTC 59.673 37.037 0.00 0.00 0.00 2.62
781 1204 4.142182 TGCTTTCACATGCTTTATTAGGCC 60.142 41.667 0.00 0.00 0.00 5.19
793 1216 5.362717 GCTTTATTAGGCCAGGTACCAAAAT 59.637 40.000 15.94 6.65 0.00 1.82
801 1224 4.020662 GGCCAGGTACCAAAATTTTGATCA 60.021 41.667 28.44 12.39 40.55 2.92
929 1383 5.412286 GCTTCTCTCAGCTTCTTTTCTCAAT 59.588 40.000 0.00 0.00 36.79 2.57
963 1422 1.168714 GCTCCTTACTTGTTGCCCTG 58.831 55.000 0.00 0.00 0.00 4.45
985 1444 1.617018 TAAGCAGCTGATCGGCCACT 61.617 55.000 23.02 17.06 36.50 4.00
1050 1512 4.704833 AAGGCGGCAGCGATGTGT 62.705 61.111 13.08 0.00 46.35 3.72
1089 1563 2.186384 CTCCTCCTTGCCTCGCTG 59.814 66.667 0.00 0.00 0.00 5.18
1140 1614 1.801512 CTCACGCAAGATCGACGCA 60.802 57.895 5.20 0.00 43.62 5.24
1231 1705 6.249192 AGACCGATAATCATCCATGAGAGTA 58.751 40.000 0.00 0.00 40.64 2.59
1249 1723 3.081804 AGTAACTTGGAGGCCAATTTCG 58.918 45.455 5.01 0.00 43.07 3.46
1263 1737 1.825090 ATTTCGCTCATCACTTGGCA 58.175 45.000 0.00 0.00 0.00 4.92
1269 1743 2.352030 CGCTCATCACTTGGCAATGTTT 60.352 45.455 0.00 0.00 0.00 2.83
1285 1759 5.224888 CAATGTTTGGTCAAGAGAATGGTG 58.775 41.667 0.00 0.00 0.00 4.17
1287 1761 4.136796 TGTTTGGTCAAGAGAATGGTGAG 58.863 43.478 0.00 0.00 0.00 3.51
1289 1763 1.003580 TGGTCAAGAGAATGGTGAGGC 59.996 52.381 0.00 0.00 0.00 4.70
1312 1786 2.351276 GCCCAACTGACCGGACAT 59.649 61.111 9.46 0.00 0.00 3.06
1349 1823 3.041940 CGACCACGACAACTGCCC 61.042 66.667 0.00 0.00 42.66 5.36
1392 1866 4.212847 GTGCTACTTGATTCATGCGATCAT 59.787 41.667 10.98 2.76 0.00 2.45
1453 1927 2.014068 GCAATCGAGAAGTTGAGGGGG 61.014 57.143 0.72 0.00 0.00 5.40
1460 1934 0.325272 GAAGTTGAGGGGGTGGAGTC 59.675 60.000 0.00 0.00 0.00 3.36
1713 3353 3.639094 CTCAACATCTAAGATCCCTCGGT 59.361 47.826 0.00 0.00 0.00 4.69
1720 3360 0.909610 AAGATCCCTCGGTCTTGCCA 60.910 55.000 0.00 0.00 36.97 4.92
1758 3398 3.117888 ACCATCTATGCCGAGAATTTGGT 60.118 43.478 3.87 3.87 33.42 3.67
1797 3437 0.802494 CACGGGAACTTGGCATACAC 59.198 55.000 0.00 0.00 0.00 2.90
1812 3452 3.316283 CATACACACAACATGTTTGCCC 58.684 45.455 8.77 0.00 40.64 5.36
1819 3459 3.818210 CACAACATGTTTGCCCAGTACTA 59.182 43.478 8.77 0.00 0.00 1.82
1859 3499 6.644181 GGCAAATAGAAGGTACTCGGTAATAC 59.356 42.308 0.00 0.00 38.49 1.89
1865 3505 4.689612 AGGTACTCGGTAATACTCGGTA 57.310 45.455 0.00 0.00 0.00 4.02
1873 3513 4.754618 TCGGTAATACTCGGTATTCGCTAA 59.245 41.667 11.13 0.00 39.18 3.09
1880 3678 5.069501 ACTCGGTATTCGCTAAGTTTTCT 57.930 39.130 0.00 0.00 39.05 2.52
1912 3710 1.885049 AGGCATAGAGAAAGAGCCCA 58.115 50.000 0.00 0.00 46.35 5.36
1925 3723 0.315251 GAGCCCAACAAAGGAAGCAC 59.685 55.000 0.00 0.00 0.00 4.40
1962 3760 5.200368 ACAAAAAGTTCTCGGCAAATCAT 57.800 34.783 0.00 0.00 0.00 2.45
1966 3764 0.740737 GTTCTCGGCAAATCATGGGG 59.259 55.000 0.00 0.00 0.00 4.96
1967 3765 1.037030 TTCTCGGCAAATCATGGGGC 61.037 55.000 0.00 0.00 0.00 5.80
1969 3767 1.076118 TCGGCAAATCATGGGGCAT 60.076 52.632 0.00 0.00 0.00 4.40
1970 3768 1.068417 CGGCAAATCATGGGGCATG 59.932 57.895 0.00 0.00 42.60 4.06
1974 3772 1.472026 GCAAATCATGGGGCATGTGTC 60.472 52.381 0.00 0.00 41.98 3.67
1982 3780 2.189521 GGCATGTGTCCCTACCCG 59.810 66.667 0.00 0.00 0.00 5.28
2007 3805 2.772622 CCCTCCCCCTATGGCGTT 60.773 66.667 0.00 0.00 0.00 4.84
2008 3806 2.383601 CCCTCCCCCTATGGCGTTT 61.384 63.158 0.00 0.00 0.00 3.60
2009 3807 1.613061 CCTCCCCCTATGGCGTTTT 59.387 57.895 0.00 0.00 0.00 2.43
2010 3808 0.751643 CCTCCCCCTATGGCGTTTTG 60.752 60.000 0.00 0.00 0.00 2.44
2035 4021 2.088423 TCCATTACATTGGGCGTTGTC 58.912 47.619 0.00 0.00 37.37 3.18
2053 4039 1.153745 CTGCCGAGTGTCCACTAGC 60.154 63.158 12.62 12.62 42.66 3.42
2067 4053 0.528470 ACTAGCAGACACTCGGCTTC 59.472 55.000 2.17 0.00 45.34 3.86
2073 4059 0.321996 AGACACTCGGCTTCCCTTTC 59.678 55.000 0.00 0.00 0.00 2.62
2076 4062 0.035458 CACTCGGCTTCCCTTTCTGT 59.965 55.000 0.00 0.00 0.00 3.41
2084 4070 3.691609 GGCTTCCCTTTCTGTATGTCTTG 59.308 47.826 0.00 0.00 0.00 3.02
2107 4093 9.157104 CTTGTTTTAAATGTTGTAACCCTTTGT 57.843 29.630 0.00 0.00 0.00 2.83
2141 4127 7.389053 CCTATGGAGAACACTTGGCTTATATTC 59.611 40.741 0.00 0.00 0.00 1.75
2148 4137 4.823989 ACACTTGGCTTATATTCCTGCATC 59.176 41.667 0.00 0.00 0.00 3.91
2187 4179 3.194861 TGATTTCTTGCCGAACCGATAG 58.805 45.455 0.00 0.00 0.00 2.08
2205 4197 4.020617 CCAACGCCTGGCTCCTCA 62.021 66.667 17.92 0.00 38.76 3.86
2213 4217 0.549950 CCTGGCTCCTCATCCATTGT 59.450 55.000 0.00 0.00 0.00 2.71
2228 4232 3.454812 TCCATTGTAGGAAGGCCTTAGTC 59.545 47.826 20.54 11.35 43.90 2.59
2233 4237 0.252103 AGGAAGGCCTTAGTCGGTGA 60.252 55.000 20.54 0.00 43.90 4.02
2243 4247 3.634448 CCTTAGTCGGTGACATCTCTCAT 59.366 47.826 0.00 0.00 34.60 2.90
2244 4248 4.822350 CCTTAGTCGGTGACATCTCTCATA 59.178 45.833 0.00 0.00 34.60 2.15
2258 4262 2.911636 CTCTCATAGGATCCATGCCCTT 59.088 50.000 15.82 0.00 34.11 3.95
2259 4263 4.099633 CTCTCATAGGATCCATGCCCTTA 58.900 47.826 15.82 0.00 34.11 2.69
2274 4278 1.238439 CCTTATATTGTGGCCGGCTG 58.762 55.000 28.56 3.77 0.00 4.85
2314 4318 3.139077 GGACTACCACAAGACTTTGGTG 58.861 50.000 22.16 12.92 46.03 4.17
2320 4324 2.094286 CCACAAGACTTTGGTGCACAAA 60.094 45.455 20.43 11.67 46.34 2.83
2343 4347 0.696485 GGGAGCCAGGGGTACCATTA 60.696 60.000 15.35 0.00 44.85 1.90
2360 4364 4.649692 CCATTAGGATGGTTGAGGATCTG 58.350 47.826 0.00 0.00 46.48 2.90
2363 4367 2.122768 AGGATGGTTGAGGATCTGTCC 58.877 52.381 0.00 0.00 45.45 4.02
2384 4388 4.021544 TCCCACCATTTAGCATTGTTTGAC 60.022 41.667 0.00 0.00 0.00 3.18
2399 4403 0.684535 TTGACGAAGAGGATGGTGCA 59.315 50.000 0.00 0.00 0.00 4.57
2401 4405 0.460987 GACGAAGAGGATGGTGCAGG 60.461 60.000 0.00 0.00 0.00 4.85
2402 4406 1.194781 ACGAAGAGGATGGTGCAGGT 61.195 55.000 0.00 0.00 0.00 4.00
2423 4427 1.377333 GGCTGCCCTAACTGGACAC 60.377 63.158 7.66 0.00 38.35 3.67
2424 4428 1.741770 GCTGCCCTAACTGGACACG 60.742 63.158 0.00 0.00 38.35 4.49
2454 4458 4.162096 TCTTCAGCGACAGAGTTAGTTC 57.838 45.455 0.00 0.00 0.00 3.01
2474 4478 5.125097 AGTTCCTATTACACTGACAGGTACG 59.875 44.000 7.51 0.00 33.37 3.67
2481 4485 1.154016 CTGACAGGTACGACAGCGG 60.154 63.158 0.00 0.00 43.17 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.944372 CCGATCTACGCCCACGGC 62.944 72.222 0.00 0.00 46.75 5.68
12 13 3.524606 ACCGATCTACGCCCACGG 61.525 66.667 0.00 0.00 46.04 4.94
14 15 0.457035 TTACACCGATCTACGCCCAC 59.543 55.000 0.00 0.00 41.07 4.61
15 16 0.457035 GTTACACCGATCTACGCCCA 59.543 55.000 0.00 0.00 41.07 5.36
16 17 0.249197 GGTTACACCGATCTACGCCC 60.249 60.000 0.00 0.00 41.07 6.13
17 18 0.249197 GGGTTACACCGATCTACGCC 60.249 60.000 0.00 0.00 39.83 5.68
18 19 3.263053 GGGTTACACCGATCTACGC 57.737 57.895 0.00 0.00 39.83 4.42
27 28 3.945304 CTGGCCGTCGGGTTACACC 62.945 68.421 14.38 4.85 37.60 4.16
28 29 2.433664 CTGGCCGTCGGGTTACAC 60.434 66.667 14.38 0.00 34.97 2.90
29 30 3.697747 CCTGGCCGTCGGGTTACA 61.698 66.667 14.38 0.00 37.13 2.41
30 31 1.394266 TATCCTGGCCGTCGGGTTAC 61.394 60.000 14.38 0.00 42.62 2.50
31 32 0.687098 TTATCCTGGCCGTCGGGTTA 60.687 55.000 14.38 0.00 42.62 2.85
32 33 1.968050 CTTATCCTGGCCGTCGGGTT 61.968 60.000 14.38 0.00 42.62 4.11
33 34 2.364579 TTATCCTGGCCGTCGGGT 60.365 61.111 14.38 0.00 42.62 5.28
34 35 2.421739 CTTATCCTGGCCGTCGGG 59.578 66.667 14.38 0.00 43.43 5.14
35 36 2.280186 GCTTATCCTGGCCGTCGG 60.280 66.667 6.99 6.99 0.00 4.79
36 37 2.280186 GGCTTATCCTGGCCGTCG 60.280 66.667 0.00 0.00 38.91 5.12
40 41 2.280186 CGTCGGCTTATCCTGGCC 60.280 66.667 0.00 0.00 44.43 5.36
41 42 2.280186 CCGTCGGCTTATCCTGGC 60.280 66.667 0.00 0.00 0.00 4.85
42 43 2.280186 GCCGTCGGCTTATCCTGG 60.280 66.667 28.98 0.00 46.69 4.45
60 61 4.767255 GCCGACAGCCCAGTCCTG 62.767 72.222 0.00 0.00 35.07 3.86
62 63 2.650813 CTATGCCGACAGCCCAGTCC 62.651 65.000 0.00 0.00 42.71 3.85
63 64 1.227380 CTATGCCGACAGCCCAGTC 60.227 63.158 0.00 0.00 42.71 3.51
64 65 2.903357 CTATGCCGACAGCCCAGT 59.097 61.111 0.00 0.00 42.71 4.00
65 66 2.590007 GCTATGCCGACAGCCCAG 60.590 66.667 0.00 0.00 42.71 4.45
66 67 3.083349 AGCTATGCCGACAGCCCA 61.083 61.111 0.00 0.00 42.71 5.36
67 68 2.280457 GAGCTATGCCGACAGCCC 60.280 66.667 0.00 0.00 42.71 5.19
68 69 2.280457 GGAGCTATGCCGACAGCC 60.280 66.667 0.00 0.00 42.71 4.85
69 70 1.153369 TTGGAGCTATGCCGACAGC 60.153 57.895 0.00 0.00 44.14 4.40
70 71 0.176680 AGTTGGAGCTATGCCGACAG 59.823 55.000 11.82 0.00 41.43 3.51
71 72 1.409064 CTAGTTGGAGCTATGCCGACA 59.591 52.381 11.82 0.00 41.43 4.35
72 73 1.269831 CCTAGTTGGAGCTATGCCGAC 60.270 57.143 2.62 2.62 39.64 4.79
73 74 1.040646 CCTAGTTGGAGCTATGCCGA 58.959 55.000 0.00 0.00 38.35 5.54
74 75 0.601311 GCCTAGTTGGAGCTATGCCG 60.601 60.000 0.00 0.00 38.35 5.69
75 76 0.250510 GGCCTAGTTGGAGCTATGCC 60.251 60.000 0.00 2.02 42.47 4.40
76 77 0.601311 CGGCCTAGTTGGAGCTATGC 60.601 60.000 0.00 0.00 38.35 3.14
77 78 1.040646 TCGGCCTAGTTGGAGCTATG 58.959 55.000 0.00 0.00 38.35 2.23
78 79 1.041437 GTCGGCCTAGTTGGAGCTAT 58.959 55.000 0.00 0.00 38.35 2.97
79 80 1.381928 CGTCGGCCTAGTTGGAGCTA 61.382 60.000 0.00 0.00 38.35 3.32
80 81 2.711922 CGTCGGCCTAGTTGGAGCT 61.712 63.158 0.00 0.00 38.35 4.09
81 82 2.202756 CGTCGGCCTAGTTGGAGC 60.203 66.667 0.00 0.00 38.35 4.70
82 83 2.494918 CCGTCGGCCTAGTTGGAG 59.505 66.667 0.00 0.00 38.35 3.86
83 84 3.766691 GCCGTCGGCCTAGTTGGA 61.767 66.667 26.23 0.00 44.06 3.53
103 104 0.818040 GGCCAAACCTATGCCTACGG 60.818 60.000 0.00 0.00 42.01 4.02
104 105 1.157870 CGGCCAAACCTATGCCTACG 61.158 60.000 2.24 0.00 43.12 3.51
105 106 0.107361 ACGGCCAAACCTATGCCTAC 60.107 55.000 2.24 0.00 43.12 3.18
106 107 0.179468 GACGGCCAAACCTATGCCTA 59.821 55.000 2.24 0.00 43.12 3.93
107 108 1.077716 GACGGCCAAACCTATGCCT 60.078 57.895 2.24 0.00 43.12 4.75
108 109 2.469516 CGACGGCCAAACCTATGCC 61.470 63.158 2.24 0.00 41.85 4.40
109 110 1.743995 ACGACGGCCAAACCTATGC 60.744 57.895 2.24 0.00 35.61 3.14
110 111 1.366111 CCACGACGGCCAAACCTATG 61.366 60.000 2.24 0.00 35.61 2.23
111 112 1.078708 CCACGACGGCCAAACCTAT 60.079 57.895 2.24 0.00 35.61 2.57
112 113 1.184322 TACCACGACGGCCAAACCTA 61.184 55.000 2.24 0.00 39.03 3.08
113 114 2.444700 CTACCACGACGGCCAAACCT 62.445 60.000 2.24 0.00 39.03 3.50
114 115 2.030862 TACCACGACGGCCAAACC 59.969 61.111 2.24 0.00 39.03 3.27
115 116 2.030958 CCTACCACGACGGCCAAAC 61.031 63.158 2.24 0.00 39.03 2.93
116 117 2.208619 TCCTACCACGACGGCCAAA 61.209 57.895 2.24 0.00 39.03 3.28
117 118 2.601067 TCCTACCACGACGGCCAA 60.601 61.111 2.24 0.00 39.03 4.52
118 119 3.376078 GTCCTACCACGACGGCCA 61.376 66.667 2.24 0.00 39.03 5.36
119 120 4.139234 GGTCCTACCACGACGGCC 62.139 72.222 0.00 0.00 38.42 6.13
120 121 4.487412 CGGTCCTACCACGACGGC 62.487 72.222 0.00 0.00 38.47 5.68
121 122 2.146073 AAACGGTCCTACCACGACGG 62.146 60.000 0.00 0.00 38.47 4.79
122 123 0.318955 AAAACGGTCCTACCACGACG 60.319 55.000 0.00 0.00 38.47 5.12
123 124 1.422388 GAAAACGGTCCTACCACGAC 58.578 55.000 0.00 0.00 38.47 4.34
124 125 0.039256 CGAAAACGGTCCTACCACGA 60.039 55.000 0.00 0.00 38.47 4.35
125 126 1.010419 CCGAAAACGGTCCTACCACG 61.010 60.000 0.00 0.00 38.47 4.94
126 127 0.033920 ACCGAAAACGGTCCTACCAC 59.966 55.000 8.51 0.00 38.47 4.16
127 128 1.545582 CTACCGAAAACGGTCCTACCA 59.454 52.381 17.29 0.00 42.86 3.25
128 129 1.546029 ACTACCGAAAACGGTCCTACC 59.454 52.381 17.29 0.00 42.86 3.18
129 130 2.599659 CACTACCGAAAACGGTCCTAC 58.400 52.381 17.29 0.00 42.86 3.18
130 131 1.067635 GCACTACCGAAAACGGTCCTA 60.068 52.381 17.29 0.37 42.86 2.94
131 132 0.320160 GCACTACCGAAAACGGTCCT 60.320 55.000 17.29 1.86 42.86 3.85
132 133 0.600782 TGCACTACCGAAAACGGTCC 60.601 55.000 17.29 6.24 42.86 4.46
133 134 0.509929 GTGCACTACCGAAAACGGTC 59.490 55.000 17.29 4.64 42.86 4.79
134 135 1.216941 CGTGCACTACCGAAAACGGT 61.217 55.000 16.19 17.82 45.24 4.83
135 136 1.489824 CGTGCACTACCGAAAACGG 59.510 57.895 16.19 7.12 0.00 4.44
136 137 1.216941 ACCGTGCACTACCGAAAACG 61.217 55.000 16.19 0.00 0.00 3.60
137 138 0.939419 AACCGTGCACTACCGAAAAC 59.061 50.000 16.19 0.00 0.00 2.43
138 139 0.938713 CAACCGTGCACTACCGAAAA 59.061 50.000 16.19 0.00 0.00 2.29
139 140 0.104487 TCAACCGTGCACTACCGAAA 59.896 50.000 16.19 0.00 0.00 3.46
140 141 0.104487 TTCAACCGTGCACTACCGAA 59.896 50.000 16.19 9.62 0.00 4.30
141 142 0.104487 TTTCAACCGTGCACTACCGA 59.896 50.000 16.19 3.53 0.00 4.69
142 143 1.127951 GATTTCAACCGTGCACTACCG 59.872 52.381 16.19 0.67 0.00 4.02
143 144 1.467342 GGATTTCAACCGTGCACTACC 59.533 52.381 16.19 1.42 0.00 3.18
144 145 1.127951 CGGATTTCAACCGTGCACTAC 59.872 52.381 16.19 0.00 44.57 2.73
145 146 1.434555 CGGATTTCAACCGTGCACTA 58.565 50.000 16.19 0.00 44.57 2.74
146 147 2.244000 CGGATTTCAACCGTGCACT 58.756 52.632 16.19 0.00 44.57 4.40
147 148 4.838959 CGGATTTCAACCGTGCAC 57.161 55.556 6.82 6.82 44.57 4.57
157 158 4.212636 CGTGGGTGTATATTTCCGGATTTC 59.787 45.833 4.15 0.00 0.00 2.17
400 407 1.514678 CCCGCTGCTTTGTGTTGCTA 61.515 55.000 0.00 0.00 0.00 3.49
401 408 2.723746 CCGCTGCTTTGTGTTGCT 59.276 55.556 0.00 0.00 0.00 3.91
402 409 2.355009 CCCGCTGCTTTGTGTTGC 60.355 61.111 0.00 0.00 0.00 4.17
403 410 1.733402 TTCCCCGCTGCTTTGTGTTG 61.733 55.000 0.00 0.00 0.00 3.33
540 953 4.288670 CTAGCAACTGATTGATGGCTTG 57.711 45.455 0.00 0.00 38.15 4.01
550 963 4.286297 TGTGGTAAAGCTAGCAACTGAT 57.714 40.909 18.83 0.00 37.28 2.90
554 967 5.567138 AATCATGTGGTAAAGCTAGCAAC 57.433 39.130 18.83 11.64 37.28 4.17
555 968 7.148086 CCTTTAATCATGTGGTAAAGCTAGCAA 60.148 37.037 18.83 0.00 37.28 3.91
556 969 6.318648 CCTTTAATCATGTGGTAAAGCTAGCA 59.681 38.462 18.83 0.00 34.77 3.49
571 984 5.316167 TGCCAATATCGCTCCTTTAATCAT 58.684 37.500 0.00 0.00 0.00 2.45
584 997 2.035832 GGGTCCCAAATTGCCAATATCG 59.964 50.000 1.78 0.00 0.00 2.92
618 1031 1.992557 TGTCCCAAAGCTAGGATTGGT 59.007 47.619 12.76 0.00 43.71 3.67
630 1043 1.118838 CAAAAGGCACCTGTCCCAAA 58.881 50.000 0.00 0.00 0.00 3.28
631 1044 0.032615 ACAAAAGGCACCTGTCCCAA 60.033 50.000 0.00 0.00 0.00 4.12
699 1112 4.639755 TGAGCACTGAAAGAATGTTGACAA 59.360 37.500 0.00 0.00 37.43 3.18
714 1127 1.270465 TGACATGTGGAGTGAGCACTG 60.270 52.381 1.15 0.00 42.66 3.66
781 1204 6.015519 TGTCCTGATCAAAATTTTGGTACCTG 60.016 38.462 26.45 14.33 38.66 4.00
793 1216 3.760151 CCTTGCTCATGTCCTGATCAAAA 59.240 43.478 0.00 0.00 38.98 2.44
801 1224 1.577736 ACTAGCCTTGCTCATGTCCT 58.422 50.000 0.00 0.00 40.44 3.85
825 1252 3.498927 AGCTGAGCATGCAATTAACAC 57.501 42.857 21.98 0.44 0.00 3.32
929 1383 1.620739 GGAGCTGTGATGCCTCAGGA 61.621 60.000 0.00 0.00 35.17 3.86
963 1422 1.573436 GCCGATCAGCTGCTTATGC 59.427 57.895 9.47 4.06 40.20 3.14
985 1444 5.871524 CGATCTTCATCTTTGGTTCTGAGAA 59.128 40.000 0.00 0.00 0.00 2.87
1050 1512 1.596934 CCTGGCGGTCTTGCTCTTA 59.403 57.895 0.00 0.00 34.52 2.10
1075 1549 2.818714 CTGCAGCGAGGCAAGGAG 60.819 66.667 0.00 0.00 44.40 3.69
1125 1599 1.801913 GAGTGCGTCGATCTTGCGT 60.802 57.895 0.00 0.00 0.00 5.24
1140 1614 1.003355 CCAGTCGGCCACAATGAGT 60.003 57.895 2.24 0.00 0.00 3.41
1202 1676 4.873746 TGGATGATTATCGGTCTCTTCC 57.126 45.455 6.28 6.28 35.09 3.46
1249 1723 2.991190 CAAACATTGCCAAGTGATGAGC 59.009 45.455 0.00 0.00 0.00 4.26
1263 1737 5.139727 TCACCATTCTCTTGACCAAACATT 58.860 37.500 0.00 0.00 0.00 2.71
1269 1743 1.003580 GCCTCACCATTCTCTTGACCA 59.996 52.381 0.00 0.00 0.00 4.02
1289 1763 2.674380 GGTCAGTTGGGCAGCCAG 60.674 66.667 15.19 0.00 0.00 4.85
1312 1786 2.752354 CGTTGTTGAATAGGGGATGCAA 59.248 45.455 0.00 0.00 29.72 4.08
1349 1823 5.353400 AGCACATCATCATTGTCAGTGTAAG 59.647 40.000 0.00 0.00 0.00 2.34
1392 1866 0.746659 ATGGCTCGTCATCATCGTCA 59.253 50.000 0.00 0.00 0.00 4.35
1404 1878 0.873312 CATCCACGACTGATGGCTCG 60.873 60.000 0.00 0.00 36.74 5.03
1453 1927 0.984230 TCCTCCATGTTGGACTCCAC 59.016 55.000 0.00 0.00 42.67 4.02
1460 1934 4.160642 TCAATCTCATCCTCCATGTTGG 57.839 45.455 0.00 0.00 39.43 3.77
1473 1947 1.835531 TCAGCAGCCTGATCAATCTCA 59.164 47.619 0.00 0.00 42.98 3.27
1640 2127 3.440522 GGATAACTGTTTGTCAAGCCTCC 59.559 47.826 0.00 0.00 0.00 4.30
1691 3331 3.639094 ACCGAGGGATCTTAGATGTTGAG 59.361 47.826 0.00 0.00 0.00 3.02
1713 3353 4.919774 TTTCCTATAGTGGTTGGCAAGA 57.080 40.909 0.00 0.00 0.00 3.02
1720 3360 7.502561 GCATAGATGGTTTTTCCTATAGTGGTT 59.497 37.037 0.00 0.00 37.07 3.67
1758 3398 1.612199 GGATTTACACTCGGCAACCCA 60.612 52.381 0.00 0.00 0.00 4.51
1797 3437 2.622942 AGTACTGGGCAAACATGTTGTG 59.377 45.455 12.82 13.09 0.00 3.33
1812 3452 7.031372 TGCCGAGTTTAACTTACATAGTACTG 58.969 38.462 5.39 0.00 35.54 2.74
1819 3459 8.556213 TTCTATTTGCCGAGTTTAACTTACAT 57.444 30.769 0.00 0.00 0.00 2.29
1859 3499 5.100259 TGAGAAAACTTAGCGAATACCGAG 58.900 41.667 0.00 0.00 41.76 4.63
1880 3678 6.605471 TCTCTATGCCTAGTGTTTTCTTGA 57.395 37.500 0.00 0.00 0.00 3.02
1912 3710 3.356290 AGTGTCTTGTGCTTCCTTTGTT 58.644 40.909 0.00 0.00 0.00 2.83
1925 3723 2.842208 TTTGTTTGCCGAGTGTCTTG 57.158 45.000 0.00 0.00 0.00 3.02
1966 3764 2.513897 GCGGGTAGGGACACATGC 60.514 66.667 0.00 0.00 0.00 4.06
1967 3765 2.189521 GGCGGGTAGGGACACATG 59.810 66.667 0.00 0.00 0.00 3.21
1995 3793 2.770589 CCGCAAAACGCCATAGGGG 61.771 63.158 0.00 0.00 41.76 4.79
1996 3794 1.591504 AACCGCAAAACGCCATAGGG 61.592 55.000 0.00 0.00 41.76 3.53
1997 3795 0.179174 GAACCGCAAAACGCCATAGG 60.179 55.000 0.00 0.00 41.76 2.57
1998 3796 0.179174 GGAACCGCAAAACGCCATAG 60.179 55.000 0.00 0.00 41.76 2.23
1999 3797 0.889638 TGGAACCGCAAAACGCCATA 60.890 50.000 0.00 0.00 41.76 2.74
2000 3798 1.531739 ATGGAACCGCAAAACGCCAT 61.532 50.000 0.00 0.00 41.76 4.40
2001 3799 1.739338 AATGGAACCGCAAAACGCCA 61.739 50.000 0.00 0.00 41.76 5.69
2002 3800 0.241481 TAATGGAACCGCAAAACGCC 59.759 50.000 0.00 0.00 41.76 5.68
2003 3801 1.333115 GTAATGGAACCGCAAAACGC 58.667 50.000 0.00 0.00 41.76 4.84
2004 3802 2.690173 TGTAATGGAACCGCAAAACG 57.310 45.000 0.00 0.00 43.15 3.60
2005 3803 3.677596 CCAATGTAATGGAACCGCAAAAC 59.322 43.478 0.00 0.00 43.54 2.43
2006 3804 3.306364 CCCAATGTAATGGAACCGCAAAA 60.306 43.478 0.00 0.00 43.54 2.44
2007 3805 2.232452 CCCAATGTAATGGAACCGCAAA 59.768 45.455 0.00 0.00 43.54 3.68
2008 3806 1.821753 CCCAATGTAATGGAACCGCAA 59.178 47.619 0.00 0.00 43.54 4.85
2009 3807 1.468985 CCCAATGTAATGGAACCGCA 58.531 50.000 0.00 0.00 43.54 5.69
2010 3808 0.102300 GCCCAATGTAATGGAACCGC 59.898 55.000 0.00 0.00 43.54 5.68
2035 4021 1.153745 GCTAGTGGACACTCGGCAG 60.154 63.158 18.63 9.46 42.54 4.85
2053 4039 0.035458 AAAGGGAAGCCGAGTGTCTG 59.965 55.000 0.00 0.00 0.00 3.51
2067 4053 9.410556 CATTTAAAACAAGACATACAGAAAGGG 57.589 33.333 0.00 0.00 0.00 3.95
2076 4062 9.968870 GGGTTACAACATTTAAAACAAGACATA 57.031 29.630 0.00 0.00 0.00 2.29
2084 4070 8.705048 TGACAAAGGGTTACAACATTTAAAAC 57.295 30.769 0.00 0.00 0.00 2.43
2107 4093 4.684724 AGTGTTCTCCATAGGGTACTTGA 58.315 43.478 0.00 0.00 34.93 3.02
2156 4145 5.342433 TCGGCAAGAAATCAATGCATTTAG 58.658 37.500 9.83 0.00 41.80 1.85
2165 4154 1.885560 TCGGTTCGGCAAGAAATCAA 58.114 45.000 0.00 0.00 41.10 2.57
2171 4160 1.143183 GGCTATCGGTTCGGCAAGA 59.857 57.895 0.00 0.00 0.00 3.02
2172 4161 0.742990 TTGGCTATCGGTTCGGCAAG 60.743 55.000 3.10 0.00 38.13 4.01
2205 4197 4.047883 ACTAAGGCCTTCCTACAATGGAT 58.952 43.478 24.49 0.00 43.40 3.41
2213 4217 1.006281 TCACCGACTAAGGCCTTCCTA 59.994 52.381 24.49 3.23 43.40 2.94
2223 4227 4.822350 CCTATGAGAGATGTCACCGACTAA 59.178 45.833 0.00 0.00 33.15 2.24
2228 4232 3.192422 GGATCCTATGAGAGATGTCACCG 59.808 52.174 3.84 0.00 0.00 4.94
2233 4237 3.518705 GGCATGGATCCTATGAGAGATGT 59.481 47.826 21.40 0.00 0.00 3.06
2243 4247 5.044919 CCACAATATAAGGGCATGGATCCTA 60.045 44.000 14.23 0.00 32.21 2.94
2244 4248 4.264083 CCACAATATAAGGGCATGGATCCT 60.264 45.833 14.23 0.00 34.29 3.24
2258 4262 1.057275 TCCCAGCCGGCCACAATATA 61.057 55.000 26.15 0.00 0.00 0.86
2259 4263 2.195683 CCCAGCCGGCCACAATAT 59.804 61.111 26.15 0.00 0.00 1.28
2274 4278 0.322008 CACCTTGGCACTCTTCTCCC 60.322 60.000 0.00 0.00 0.00 4.30
2314 4318 1.508088 CTGGCTCCCGAATTTGTGC 59.492 57.895 0.00 0.00 0.00 4.57
2320 4324 2.070650 GTACCCCTGGCTCCCGAAT 61.071 63.158 0.00 0.00 0.00 3.34
2321 4325 2.686106 GTACCCCTGGCTCCCGAA 60.686 66.667 0.00 0.00 0.00 4.30
2325 4329 0.765510 CTAATGGTACCCCTGGCTCC 59.234 60.000 10.07 0.00 0.00 4.70
2343 4347 2.122768 GGACAGATCCTCAACCATCCT 58.877 52.381 0.00 0.00 42.45 3.24
2360 4364 4.021544 TCAAACAATGCTAAATGGTGGGAC 60.022 41.667 0.00 0.00 0.00 4.46
2363 4367 3.919804 CGTCAAACAATGCTAAATGGTGG 59.080 43.478 0.00 0.00 0.00 4.61
2384 4388 0.742281 CACCTGCACCATCCTCTTCG 60.742 60.000 0.00 0.00 0.00 3.79
2399 4403 1.847968 AGTTAGGGCAGCCACACCT 60.848 57.895 15.19 3.17 38.40 4.00
2401 4405 1.675641 CCAGTTAGGGCAGCCACAC 60.676 63.158 15.19 6.26 0.00 3.82
2402 4406 1.845664 TCCAGTTAGGGCAGCCACA 60.846 57.895 15.19 0.00 38.24 4.17
2423 4427 2.825836 GCTGAAGATGGGGTGCCG 60.826 66.667 0.00 0.00 0.00 5.69
2424 4428 2.825836 CGCTGAAGATGGGGTGCC 60.826 66.667 0.00 0.00 0.00 5.01
2454 4458 4.397103 TGTCGTACCTGTCAGTGTAATAGG 59.603 45.833 0.00 0.00 34.70 2.57
2474 4478 1.705256 TCGTAATTGTCACCGCTGTC 58.295 50.000 0.00 0.00 0.00 3.51
2481 4485 2.281762 GTCTCCGCATCGTAATTGTCAC 59.718 50.000 0.00 0.00 0.00 3.67
2514 4519 2.748798 GCTGCTCCTCATCACATCCATT 60.749 50.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.