Multiple sequence alignment - TraesCS5D01G301700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G301700 chr5D 100.000 2483 0 0 1 2483 398455125 398457607 0.000000e+00 4586.0
1 TraesCS5D01G301700 chr5D 82.300 1565 198 39 352 1872 398431556 398433085 0.000000e+00 1282.0
2 TraesCS5D01G301700 chr5D 76.526 426 67 26 1187 1593 398466034 398466445 4.190000e-48 202.0
3 TraesCS5D01G301700 chr5A 92.032 866 65 3 1615 2480 503478622 503479483 0.000000e+00 1214.0
4 TraesCS5D01G301700 chr5A 83.045 1156 152 21 765 1893 503436409 503437547 0.000000e+00 1009.0
5 TraesCS5D01G301700 chr5A 90.177 621 34 6 1 595 503471761 503472380 0.000000e+00 784.0
6 TraesCS5D01G301700 chr5A 93.607 438 27 1 1185 1621 503478004 503478441 0.000000e+00 652.0
7 TraesCS5D01G301700 chr5A 96.443 253 7 1 643 893 503472377 503472629 1.370000e-112 416.0
8 TraesCS5D01G301700 chr5A 77.603 701 117 31 1004 1693 503396663 503397334 2.990000e-104 388.0
9 TraesCS5D01G301700 chr5A 77.165 635 128 15 1002 1628 503257849 503258474 1.090000e-93 353.0
10 TraesCS5D01G301700 chr5A 87.975 158 15 2 986 1139 503477846 503478003 1.520000e-42 183.0
11 TraesCS5D01G301700 chr5A 95.050 101 4 1 897 996 503475635 503475735 9.190000e-35 158.0
12 TraesCS5D01G301700 chr5A 77.500 280 43 13 1337 1600 503466979 503467254 1.540000e-32 150.0
13 TraesCS5D01G301700 chr5B 84.031 1171 128 27 518 1643 478398830 478399986 0.000000e+00 1072.0
14 TraesCS5D01G301700 chr5B 78.814 1770 242 69 217 1906 478413878 478415594 0.000000e+00 1068.0
15 TraesCS5D01G301700 chr5B 76.205 643 120 24 1002 1628 478331938 478332563 2.400000e-80 309.0
16 TraesCS5D01G301700 chr5B 84.106 302 31 11 159 454 478398520 478398810 2.430000e-70 276.0
17 TraesCS5D01G301700 chr5B 94.737 38 2 0 752 789 478335723 478335760 2.670000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G301700 chr5D 398455125 398457607 2482 False 4586.000000 4586 100.000000 1 2483 1 chr5D.!!$F2 2482
1 TraesCS5D01G301700 chr5D 398431556 398433085 1529 False 1282.000000 1282 82.300000 352 1872 1 chr5D.!!$F1 1520
2 TraesCS5D01G301700 chr5A 503436409 503437547 1138 False 1009.000000 1009 83.045000 765 1893 1 chr5A.!!$F3 1128
3 TraesCS5D01G301700 chr5A 503471761 503479483 7722 False 567.833333 1214 92.547333 1 2480 6 chr5A.!!$F5 2479
4 TraesCS5D01G301700 chr5A 503396663 503397334 671 False 388.000000 388 77.603000 1004 1693 1 chr5A.!!$F2 689
5 TraesCS5D01G301700 chr5A 503257849 503258474 625 False 353.000000 353 77.165000 1002 1628 1 chr5A.!!$F1 626
6 TraesCS5D01G301700 chr5B 478413878 478415594 1716 False 1068.000000 1068 78.814000 217 1906 1 chr5B.!!$F1 1689
7 TraesCS5D01G301700 chr5B 478398520 478399986 1466 False 674.000000 1072 84.068500 159 1643 2 chr5B.!!$F3 1484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 177 0.819582 CGCTGGATTGCCAAGGAAAT 59.180 50.000 0.00 0.00 45.41 2.17 F
257 283 1.228510 CAAATCAGAGAGGGCCCCC 59.771 63.158 21.43 6.71 0.00 5.40 F
1117 6368 0.326264 GGCTCTCCTGAAGAAGGCAA 59.674 55.000 0.00 0.00 46.92 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1117 6368 0.183492 TTGCTCTTCCACAAGGCTGT 59.817 50.0 0.0 0.0 35.63 4.40 R
1123 6374 0.250295 CCGGTCTTGCTCTTCCACAA 60.250 55.0 0.0 0.0 0.00 3.33 R
2460 7913 0.178978 GGGCATCCTTTGAGGGGATC 60.179 60.0 0.0 0.0 41.17 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.891060 GCGACGGAACAGAACTGCAG 61.891 60.000 13.48 13.48 0.00 4.41
62 63 5.849510 TGCGCCTAAATAAGTTATGCTCTA 58.150 37.500 4.18 0.00 32.74 2.43
63 64 6.285224 TGCGCCTAAATAAGTTATGCTCTAA 58.715 36.000 4.18 0.00 32.74 2.10
76 84 6.838612 AGTTATGCTCTAAGTCCTCAATCTCT 59.161 38.462 0.00 0.00 0.00 3.10
78 86 3.629855 TGCTCTAAGTCCTCAATCTCTCG 59.370 47.826 0.00 0.00 0.00 4.04
82 90 5.254115 TCTAAGTCCTCAATCTCTCGACAA 58.746 41.667 0.00 0.00 0.00 3.18
98 106 2.032071 AAAGAGAACGGGCGGTGG 59.968 61.111 0.00 0.00 0.00 4.61
127 135 8.573035 ACGTTACCATTACATTTCAAAATCTGT 58.427 29.630 0.00 0.00 0.00 3.41
152 177 0.819582 CGCTGGATTGCCAAGGAAAT 59.180 50.000 0.00 0.00 45.41 2.17
193 218 3.818961 AAGAACGTGCATCATCACTTG 57.181 42.857 0.00 0.00 34.92 3.16
202 227 5.063817 CGTGCATCATCACTTGTGATTCTTA 59.936 40.000 12.95 1.53 34.21 2.10
214 239 9.081997 CACTTGTGATTCTTATAGAAGTGAGAC 57.918 37.037 0.00 0.00 40.71 3.36
257 283 1.228510 CAAATCAGAGAGGGCCCCC 59.771 63.158 21.43 6.71 0.00 5.40
259 285 1.575447 AAATCAGAGAGGGCCCCCAC 61.575 60.000 21.43 5.00 38.92 4.61
374 413 2.106566 TGAAGTGGTTGTTGTTGCCAT 58.893 42.857 0.00 0.00 34.52 4.40
466 520 4.101585 TGACAACCTCCTGAATGCCTATAG 59.898 45.833 0.00 0.00 0.00 1.31
473 527 4.090090 TCCTGAATGCCTATAGAGCTACC 58.910 47.826 0.00 0.00 0.00 3.18
488 542 3.567397 AGCTACCGGTCTATCAGTGATT 58.433 45.455 12.40 0.00 0.00 2.57
600 663 2.931969 TGATTGATAGTCACGCTGCAAG 59.068 45.455 0.00 0.00 0.00 4.01
656 726 5.931532 ACTGCTAATGCGCATACATAATTC 58.068 37.500 25.61 7.70 43.34 2.17
835 937 9.241919 TCTCCAAATGCTATCTTCATTTAACAA 57.758 29.630 1.29 0.00 40.86 2.83
1086 6336 7.496920 CACCTATCAGCAACAAAGATGAAGATA 59.503 37.037 0.00 0.00 37.48 1.98
1117 6368 0.326264 GGCTCTCCTGAAGAAGGCAA 59.674 55.000 0.00 0.00 46.92 4.52
1122 6373 0.250901 TCCTGAAGAAGGCAACAGCC 60.251 55.000 0.00 0.00 46.92 4.85
1159 6410 4.993307 GCATCTTCATGGCCAGGA 57.007 55.556 17.85 17.85 0.00 3.86
1175 6426 2.128507 GGATCCTCGTCCTCGCCTT 61.129 63.158 3.84 0.00 35.32 4.35
1287 6539 1.279496 ACCACAAGGCTCTCATGCTA 58.721 50.000 0.00 0.00 39.06 3.49
1298 6550 1.148157 CTCATGCTACGCAAGGTCGG 61.148 60.000 0.00 0.00 43.62 4.79
1376 6628 3.874383 TGGTCAAGAGGATGGTTTTGA 57.126 42.857 0.00 0.00 0.00 2.69
1455 6707 3.058155 ACACTGACGAGTATGACACTGAC 60.058 47.826 0.00 0.00 37.72 3.51
1476 6729 2.851071 CGATGAGGGAGACGAGCCC 61.851 68.421 0.00 0.00 46.40 5.19
1580 6833 4.425577 AATGTTCATCAGAAAGTTCCGC 57.574 40.909 0.00 0.00 35.08 5.54
1581 6834 2.844946 TGTTCATCAGAAAGTTCCGCA 58.155 42.857 0.00 0.00 35.08 5.69
1693 7133 6.119536 ACTATAGAAGTGGTGAGAGTGAGAG 58.880 44.000 6.78 0.00 36.93 3.20
1704 7149 4.273969 GTGAGAGTGAGAGGATAACGTAGG 59.726 50.000 0.00 0.00 0.00 3.18
1929 7382 0.250338 GCTTCCACCAAACCTCGACT 60.250 55.000 0.00 0.00 0.00 4.18
1955 7408 1.810030 CGCTACGCCCTCCTGAAAC 60.810 63.158 0.00 0.00 0.00 2.78
1966 7419 1.974236 CTCCTGAAACTCCACACCTCT 59.026 52.381 0.00 0.00 0.00 3.69
1967 7420 3.165875 CTCCTGAAACTCCACACCTCTA 58.834 50.000 0.00 0.00 0.00 2.43
1977 7430 1.407437 CCACACCTCTATTGCTCACCC 60.407 57.143 0.00 0.00 0.00 4.61
1978 7431 1.278985 CACACCTCTATTGCTCACCCA 59.721 52.381 0.00 0.00 0.00 4.51
2021 7474 4.151867 CCACGTTGAAGGAAACTAGTAAGC 59.848 45.833 0.00 0.00 42.68 3.09
2031 7484 7.816226 AGGAAACTAGTAAGCTTTGGCTCCG 62.816 48.000 3.20 0.00 44.45 4.63
2146 7599 2.987821 GTTGGACAAGTAGAGCGAGTTC 59.012 50.000 0.00 0.00 0.00 3.01
2222 7675 5.931441 AGTTTGTGTCTCATTTAGCTGTC 57.069 39.130 0.00 0.00 0.00 3.51
2230 7683 8.364894 TGTGTCTCATTTAGCTGTCTAGTAAAA 58.635 33.333 0.00 0.00 0.00 1.52
2262 7715 3.309296 AGACTTGACCTGGAGAACTTGA 58.691 45.455 0.00 0.00 0.00 3.02
2266 7719 1.004440 ACCTGGAGAACTTGAGCGC 60.004 57.895 0.00 0.00 0.00 5.92
2291 7744 2.743938 TCGCGCCAAGATCTTCTTATC 58.256 47.619 4.57 0.00 33.78 1.75
2299 7752 1.271102 AGATCTTCTTATCGCTCGCCC 59.729 52.381 0.00 0.00 0.00 6.13
2306 7759 2.293677 TCTTATCGCTCGCCCTTAGAAG 59.706 50.000 0.00 0.00 0.00 2.85
2316 7769 1.137086 GCCCTTAGAAGTCGATGCTGA 59.863 52.381 0.00 0.00 0.00 4.26
2356 7809 4.431131 ACTTCCGCATGGCCCAGG 62.431 66.667 0.00 0.00 34.14 4.45
2363 7816 2.363276 CATGGCCCAGGTGTGCAT 60.363 61.111 0.00 0.00 0.00 3.96
2388 7841 1.520342 GAGCCAGAGACCATGACGC 60.520 63.158 0.00 0.00 0.00 5.19
2397 7850 4.827087 CCATGACGCGCCTGCTCT 62.827 66.667 5.73 0.00 39.65 4.09
2409 7862 0.534412 CCTGCTCTCTGGATGTTCGT 59.466 55.000 0.00 0.00 33.56 3.85
2411 7864 2.266554 CTGCTCTCTGGATGTTCGTTC 58.733 52.381 0.00 0.00 0.00 3.95
2417 7870 1.004320 TGGATGTTCGTTCCCGGTG 60.004 57.895 0.00 0.00 31.87 4.94
2435 7888 3.030291 GGTGGGTATGGCATGAAATCAA 58.970 45.455 10.98 0.00 0.00 2.57
2439 7892 2.036346 GGTATGGCATGAAATCAAGGCC 59.964 50.000 10.98 17.66 45.17 5.19
2442 7895 0.383231 GGCATGAAATCAAGGCCTCG 59.617 55.000 5.23 0.00 43.08 4.63
2456 7909 0.387239 GCCTCGTGTTGTTTGATGGC 60.387 55.000 0.00 0.00 0.00 4.40
2460 7913 0.721155 CGTGTTGTTTGATGGCGACG 60.721 55.000 0.00 0.00 0.00 5.12
2469 7922 2.443952 ATGGCGACGATCCCCTCA 60.444 61.111 0.00 0.00 0.00 3.86
2480 7933 1.659035 ATCCCCTCAAAGGATGCCCC 61.659 60.000 0.00 0.00 42.69 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.665298 GCATCCTCGCCAAATTCCTC 59.335 55.000 0.00 0.00 0.00 3.71
52 53 7.049799 AGAGATTGAGGACTTAGAGCATAAC 57.950 40.000 0.00 0.00 0.00 1.89
62 63 4.524714 TCTTTGTCGAGAGATTGAGGACTT 59.475 41.667 0.00 0.00 45.19 3.01
63 64 4.082845 TCTTTGTCGAGAGATTGAGGACT 58.917 43.478 0.00 0.00 45.19 3.85
76 84 1.372499 CGCCCGTTCTCTTTGTCGA 60.372 57.895 0.00 0.00 0.00 4.20
78 86 1.301479 ACCGCCCGTTCTCTTTGTC 60.301 57.895 0.00 0.00 0.00 3.18
82 90 4.699522 GCCACCGCCCGTTCTCTT 62.700 66.667 0.00 0.00 0.00 2.85
98 106 4.688511 TGAAATGTAATGGTAACGTGGC 57.311 40.909 0.00 0.00 42.51 5.01
101 109 8.573035 ACAGATTTTGAAATGTAATGGTAACGT 58.427 29.630 0.00 0.00 42.51 3.99
127 135 0.250684 TTGGCAATCCAGCGAGTGAA 60.251 50.000 0.00 0.00 44.53 3.18
193 218 8.846211 AGCTAGTCTCACTTCTATAAGAATCAC 58.154 37.037 0.00 0.00 33.13 3.06
202 227 5.073144 AGGAGCTAGCTAGTCTCACTTCTAT 59.927 44.000 29.75 14.17 32.09 1.98
214 239 8.589338 TGAAGGAAAAATATAGGAGCTAGCTAG 58.411 37.037 19.38 16.84 0.00 3.42
257 283 7.880195 TCCTTTCTCAAAAGAGGAATAAGAGTG 59.120 37.037 0.00 0.00 43.90 3.51
259 285 8.100164 ACTCCTTTCTCAAAAGAGGAATAAGAG 58.900 37.037 0.00 0.00 43.90 2.85
374 413 2.992689 TCCCCGTGCGCTTCACTA 60.993 61.111 9.73 0.00 43.46 2.74
466 520 2.573369 TCACTGATAGACCGGTAGCTC 58.427 52.381 7.34 4.80 0.00 4.09
473 527 4.201980 TGACGGTTAATCACTGATAGACCG 60.202 45.833 27.96 27.96 46.37 4.79
488 542 0.947180 GCTTTCCAGCGTGACGGTTA 60.947 55.000 7.06 0.00 35.91 2.85
600 663 2.050077 GCGGTTTCAGTTGCAGGC 60.050 61.111 0.00 0.00 0.00 4.85
602 665 0.318107 CTTGGCGGTTTCAGTTGCAG 60.318 55.000 0.00 0.00 0.00 4.41
603 666 0.749818 TCTTGGCGGTTTCAGTTGCA 60.750 50.000 0.00 0.00 0.00 4.08
604 667 0.383949 TTCTTGGCGGTTTCAGTTGC 59.616 50.000 0.00 0.00 0.00 4.17
605 668 2.861462 TTTCTTGGCGGTTTCAGTTG 57.139 45.000 0.00 0.00 0.00 3.16
606 669 4.400529 AATTTTCTTGGCGGTTTCAGTT 57.599 36.364 0.00 0.00 0.00 3.16
607 670 5.523438 TTAATTTTCTTGGCGGTTTCAGT 57.477 34.783 0.00 0.00 0.00 3.41
608 671 4.385748 GCTTAATTTTCTTGGCGGTTTCAG 59.614 41.667 0.00 0.00 0.00 3.02
609 672 4.038642 AGCTTAATTTTCTTGGCGGTTTCA 59.961 37.500 0.00 0.00 0.00 2.69
656 726 1.986882 GCCATAAAGGACATCCCCAG 58.013 55.000 0.00 0.00 41.22 4.45
835 937 7.433680 CAAACTTTATTAGGTTGTCCAAAGCT 58.566 34.615 0.00 0.00 44.89 3.74
975 4088 0.107643 GATCACTAAGCTCCAGGGGC 59.892 60.000 1.54 1.54 0.00 5.80
1117 6368 0.183492 TTGCTCTTCCACAAGGCTGT 59.817 50.000 0.00 0.00 35.63 4.40
1122 6373 1.151668 CGGTCTTGCTCTTCCACAAG 58.848 55.000 0.00 0.00 43.73 3.16
1123 6374 0.250295 CCGGTCTTGCTCTTCCACAA 60.250 55.000 0.00 0.00 0.00 3.33
1159 6410 3.082579 GCAAGGCGAGGACGAGGAT 62.083 63.158 0.00 0.00 42.66 3.24
1175 6426 4.147449 CCATCCTGCGACGGAGCA 62.147 66.667 11.32 0.00 45.96 4.26
1287 6539 4.699522 GGCTTCCCGACCTTGCGT 62.700 66.667 0.00 0.00 0.00 5.24
1298 6550 1.520787 CCATGGTACGTCGGCTTCC 60.521 63.158 2.57 0.00 0.00 3.46
1376 6628 0.842030 TGTCCAGTCAGGGAAGCCAT 60.842 55.000 0.00 0.00 39.05 4.40
1455 6707 3.187699 CTCGTCTCCCTCATCGCCG 62.188 68.421 0.00 0.00 0.00 6.46
1476 6729 1.335810 CCTCATTGCATTCATCACCGG 59.664 52.381 0.00 0.00 0.00 5.28
1501 6754 3.569361 AAGCCCTCAGCCTCCAGGA 62.569 63.158 0.00 0.00 45.47 3.86
1580 6833 0.792640 AACTCGCGTTCATCTGCTTG 59.207 50.000 5.77 0.00 0.00 4.01
1581 6834 1.512926 AAACTCGCGTTCATCTGCTT 58.487 45.000 5.77 0.00 31.66 3.91
1693 7133 1.617357 CCTGGCCTACCTACGTTATCC 59.383 57.143 3.32 0.00 36.63 2.59
1704 7149 2.488153 GACACAAATGTTCCTGGCCTAC 59.512 50.000 3.32 0.00 39.95 3.18
1906 7359 0.955919 GAGGTTTGGTGGAAGCCGAG 60.956 60.000 0.00 0.00 39.88 4.63
1907 7360 1.072505 GAGGTTTGGTGGAAGCCGA 59.927 57.895 0.00 0.00 39.88 5.54
1950 7403 3.327757 AGCAATAGAGGTGTGGAGTTTCA 59.672 43.478 0.00 0.00 0.00 2.69
1955 7408 2.419297 GGTGAGCAATAGAGGTGTGGAG 60.419 54.545 0.00 0.00 0.00 3.86
1966 7419 2.173356 CCTCCAAGATGGGTGAGCAATA 59.827 50.000 0.00 0.00 38.32 1.90
1967 7420 1.064166 CCTCCAAGATGGGTGAGCAAT 60.064 52.381 0.00 0.00 38.32 3.56
1977 7430 3.733709 GGCCATACCCTCCAAGATG 57.266 57.895 0.00 0.00 0.00 2.90
2002 7455 6.669278 CCAAAGCTTACTAGTTTCCTTCAAC 58.331 40.000 0.00 0.00 0.00 3.18
2021 7474 2.361230 GGGGGTTCGGAGCCAAAG 60.361 66.667 15.27 0.00 45.46 2.77
2031 7484 6.749036 TCAGAAGAGATAATAAGGGGGTTC 57.251 41.667 0.00 0.00 0.00 3.62
2115 7568 6.204882 GCTCTACTTGTCCAACTTTAACATGT 59.795 38.462 0.00 0.00 35.96 3.21
2127 7580 1.199327 CGAACTCGCTCTACTTGTCCA 59.801 52.381 0.00 0.00 0.00 4.02
2199 7652 6.058183 AGACAGCTAAATGAGACACAAACTT 58.942 36.000 0.00 0.00 0.00 2.66
2230 7683 7.894364 TCTCCAGGTCAAGTCTAGTAAACTATT 59.106 37.037 0.00 0.00 0.00 1.73
2235 7688 6.075984 AGTTCTCCAGGTCAAGTCTAGTAAA 58.924 40.000 0.00 0.00 0.00 2.01
2240 7693 4.480115 TCAAGTTCTCCAGGTCAAGTCTA 58.520 43.478 0.00 0.00 0.00 2.59
2241 7694 3.309296 TCAAGTTCTCCAGGTCAAGTCT 58.691 45.455 0.00 0.00 0.00 3.24
2266 7719 2.876368 AAGATCTTGGCGCGAAGGGG 62.876 60.000 28.45 7.86 42.39 4.79
2275 7728 2.728839 CGAGCGATAAGAAGATCTTGGC 59.271 50.000 14.00 1.04 37.29 4.52
2276 7729 2.728839 GCGAGCGATAAGAAGATCTTGG 59.271 50.000 14.00 0.00 37.29 3.61
2291 7744 1.586564 CGACTTCTAAGGGCGAGCG 60.587 63.158 0.00 0.00 32.21 5.03
2299 7752 3.305629 GCAGTTCAGCATCGACTTCTAAG 59.694 47.826 0.00 0.00 0.00 2.18
2306 7759 0.997932 CTCAGCAGTTCAGCATCGAC 59.002 55.000 0.00 0.00 36.85 4.20
2363 7816 1.297689 GGTCTCTGGCTCATGTGCA 59.702 57.895 20.43 6.86 34.04 4.57
2369 7822 1.893062 CGTCATGGTCTCTGGCTCA 59.107 57.895 0.00 0.00 0.00 4.26
2388 7841 0.809241 GAACATCCAGAGAGCAGGCG 60.809 60.000 0.00 0.00 0.00 5.52
2417 7870 2.036346 GCCTTGATTTCATGCCATACCC 59.964 50.000 0.00 0.00 0.00 3.69
2435 7888 1.238439 CATCAAACAACACGAGGCCT 58.762 50.000 3.86 3.86 0.00 5.19
2439 7892 0.865111 TCGCCATCAAACAACACGAG 59.135 50.000 0.00 0.00 0.00 4.18
2442 7895 0.584396 TCGTCGCCATCAAACAACAC 59.416 50.000 0.00 0.00 0.00 3.32
2456 7909 0.753262 ATCCTTTGAGGGGATCGTCG 59.247 55.000 0.00 0.00 39.11 5.12
2460 7913 0.178978 GGGCATCCTTTGAGGGGATC 60.179 60.000 0.00 0.00 41.17 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.