Multiple sequence alignment - TraesCS5D01G301600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G301600 chr5D 100.000 2594 0 0 1 2594 398434033 398436626 0.000000e+00 4791
1 TraesCS5D01G301600 chr5D 80.140 1576 211 50 216 1725 398464003 398465542 0.000000e+00 1083
2 TraesCS5D01G301600 chr5D 95.402 87 2 2 2510 2594 168522866 168522780 1.250000e-28 137
3 TraesCS5D01G301600 chr5D 97.468 79 2 0 2516 2594 410363566 410363488 4.500000e-28 135
4 TraesCS5D01G301600 chr5B 84.515 1847 221 31 480 2292 478404417 478406232 0.000000e+00 1766
5 TraesCS5D01G301600 chr5B 81.788 1499 186 49 268 1708 478425153 478426622 0.000000e+00 1175
6 TraesCS5D01G301600 chr5B 80.846 1206 176 29 690 1851 478430774 478431968 0.000000e+00 896
7 TraesCS5D01G301600 chr5B 89.899 99 10 0 2418 2516 478406637 478406735 7.530000e-26 128
8 TraesCS5D01G301600 chr5A 79.802 1718 237 61 74 1708 503484907 503486597 0.000000e+00 1149
9 TraesCS5D01G301600 chr5A 81.579 1178 168 24 690 1833 503492713 503493875 0.000000e+00 928
10 TraesCS5D01G301600 chr5A 85.351 669 93 3 987 1651 503439578 503440245 0.000000e+00 688
11 TraesCS5D01G301600 chr5A 78.466 678 76 38 287 907 503438843 503439507 1.880000e-101 379
12 TraesCS5D01G301600 chr5A 78.049 205 20 11 413 599 503492473 503492670 3.530000e-19 106
13 TraesCS5D01G301600 chr2D 96.552 87 2 1 2508 2594 260562158 260562243 2.690000e-30 143
14 TraesCS5D01G301600 chr7D 97.531 81 2 0 2514 2594 23905094 23905014 3.480000e-29 139
15 TraesCS5D01G301600 chr7D 98.718 78 1 0 2517 2594 476053254 476053177 3.480000e-29 139
16 TraesCS5D01G301600 chr7D 96.386 83 2 1 2512 2594 416531876 416531957 4.500000e-28 135
17 TraesCS5D01G301600 chr6D 96.429 84 2 1 2512 2594 150055616 150055699 1.250000e-28 137
18 TraesCS5D01G301600 chr6D 97.500 80 2 0 2515 2594 300031106 300031185 1.250000e-28 137
19 TraesCS5D01G301600 chr3D 95.294 85 4 0 2510 2594 319757838 319757922 4.500000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G301600 chr5D 398434033 398436626 2593 False 4791.0 4791 100.0000 1 2594 1 chr5D.!!$F1 2593
1 TraesCS5D01G301600 chr5D 398464003 398465542 1539 False 1083.0 1083 80.1400 216 1725 1 chr5D.!!$F2 1509
2 TraesCS5D01G301600 chr5B 478425153 478426622 1469 False 1175.0 1175 81.7880 268 1708 1 chr5B.!!$F1 1440
3 TraesCS5D01G301600 chr5B 478404417 478406735 2318 False 947.0 1766 87.2070 480 2516 2 chr5B.!!$F3 2036
4 TraesCS5D01G301600 chr5B 478430774 478431968 1194 False 896.0 896 80.8460 690 1851 1 chr5B.!!$F2 1161
5 TraesCS5D01G301600 chr5A 503484907 503486597 1690 False 1149.0 1149 79.8020 74 1708 1 chr5A.!!$F1 1634
6 TraesCS5D01G301600 chr5A 503438843 503440245 1402 False 533.5 688 81.9085 287 1651 2 chr5A.!!$F2 1364
7 TraesCS5D01G301600 chr5A 503492473 503493875 1402 False 517.0 928 79.8140 413 1833 2 chr5A.!!$F3 1420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.03213 GCTGGGACTCGAATATGCGA 59.968 55.0 5.49 5.49 38.74 5.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2105 0.0982 TCGACGATGGACTACTTGCG 59.902 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.489679 ACTAAAAAGAAAAGCGAGGCTG 57.510 40.909 0.00 0.00 39.62 4.85
24 25 2.800881 AAAAAGAAAAGCGAGGCTGG 57.199 45.000 0.00 0.00 39.62 4.85
25 26 0.961753 AAAAGAAAAGCGAGGCTGGG 59.038 50.000 0.00 0.00 39.62 4.45
26 27 0.110486 AAAGAAAAGCGAGGCTGGGA 59.890 50.000 0.00 0.00 39.62 4.37
27 28 0.606673 AAGAAAAGCGAGGCTGGGAC 60.607 55.000 0.00 0.00 39.62 4.46
28 29 1.003233 GAAAAGCGAGGCTGGGACT 60.003 57.895 0.00 0.00 39.62 3.85
29 30 1.003233 AAAAGCGAGGCTGGGACTC 60.003 57.895 0.00 0.00 39.62 3.36
36 37 2.447244 GAGGCTGGGACTCGAATATG 57.553 55.000 0.00 0.00 0.00 1.78
37 38 0.394565 AGGCTGGGACTCGAATATGC 59.605 55.000 0.00 0.00 0.00 3.14
38 39 0.946221 GGCTGGGACTCGAATATGCG 60.946 60.000 0.00 0.00 0.00 4.73
39 40 0.032130 GCTGGGACTCGAATATGCGA 59.968 55.000 5.49 5.49 38.74 5.10
53 54 8.812147 TCGAATATGCGAGTTTAAATACAGAT 57.188 30.769 0.25 0.00 35.01 2.90
54 55 8.699749 TCGAATATGCGAGTTTAAATACAGATG 58.300 33.333 0.25 0.00 35.01 2.90
55 56 8.699749 CGAATATGCGAGTTTAAATACAGATGA 58.300 33.333 0.00 0.00 0.00 2.92
72 73 7.133891 ACAGATGATACTAAATTTATGCGGC 57.866 36.000 0.00 0.00 0.00 6.53
75 76 7.535258 CAGATGATACTAAATTTATGCGGCAAC 59.465 37.037 6.82 0.00 0.00 4.17
104 105 3.435671 GTGGGACAAGTAGAAAATCACCG 59.564 47.826 0.00 0.00 44.16 4.94
110 111 5.556915 ACAAGTAGAAAATCACCGGATTCA 58.443 37.500 9.46 0.00 42.87 2.57
131 132 9.727627 GATTCAAAAGGTTGAGATAATTAGCAG 57.272 33.333 3.17 0.00 44.49 4.24
145 159 2.627515 TAGCAGAGCATCACCATTCC 57.372 50.000 0.00 0.00 37.82 3.01
151 165 2.161855 GAGCATCACCATTCCAACACA 58.838 47.619 0.00 0.00 33.17 3.72
159 173 2.217750 CCATTCCAACACACAAGACGA 58.782 47.619 0.00 0.00 0.00 4.20
160 174 2.032030 CCATTCCAACACACAAGACGAC 60.032 50.000 0.00 0.00 0.00 4.34
161 175 1.282817 TTCCAACACACAAGACGACG 58.717 50.000 0.00 0.00 0.00 5.12
162 176 0.173935 TCCAACACACAAGACGACGT 59.826 50.000 0.00 0.00 0.00 4.34
163 177 0.300491 CCAACACACAAGACGACGTG 59.700 55.000 4.58 0.00 39.10 4.49
166 180 1.591594 CACACAAGACGACGTGCCT 60.592 57.895 4.58 0.00 36.57 4.75
167 181 0.318360 CACACAAGACGACGTGCCTA 60.318 55.000 4.58 0.00 36.57 3.93
171 185 0.458543 CAAGACGACGTGCCTAGCAT 60.459 55.000 4.58 0.00 41.91 3.79
175 189 0.524816 ACGACGTGCCTAGCATAACG 60.525 55.000 0.00 2.08 41.91 3.18
190 204 7.607991 CCTAGCATAACGAAAATATCTTCCCAT 59.392 37.037 0.00 0.00 0.00 4.00
193 207 4.918810 AACGAAAATATCTTCCCATGGC 57.081 40.909 6.09 0.00 0.00 4.40
198 212 6.777580 ACGAAAATATCTTCCCATGGCTAAAT 59.222 34.615 6.09 0.00 0.00 1.40
199 213 7.040409 ACGAAAATATCTTCCCATGGCTAAATC 60.040 37.037 6.09 0.00 0.00 2.17
200 214 7.040478 CGAAAATATCTTCCCATGGCTAAATCA 60.040 37.037 6.09 0.00 0.00 2.57
201 215 7.771927 AAATATCTTCCCATGGCTAAATCAG 57.228 36.000 6.09 0.00 0.00 2.90
203 217 3.122480 TCTTCCCATGGCTAAATCAGGA 58.878 45.455 6.09 0.00 0.00 3.86
206 220 3.902218 TCCCATGGCTAAATCAGGAAAG 58.098 45.455 6.09 0.00 0.00 2.62
207 221 2.363359 CCCATGGCTAAATCAGGAAAGC 59.637 50.000 6.09 0.00 0.00 3.51
209 223 3.067742 CCATGGCTAAATCAGGAAAGCAG 59.932 47.826 0.00 0.00 36.68 4.24
210 224 3.439857 TGGCTAAATCAGGAAAGCAGT 57.560 42.857 0.00 0.00 36.68 4.40
211 225 4.568072 TGGCTAAATCAGGAAAGCAGTA 57.432 40.909 0.00 0.00 36.68 2.74
212 226 5.116084 TGGCTAAATCAGGAAAGCAGTAT 57.884 39.130 0.00 0.00 36.68 2.12
213 227 6.247229 TGGCTAAATCAGGAAAGCAGTATA 57.753 37.500 0.00 0.00 36.68 1.47
215 229 5.177696 GGCTAAATCAGGAAAGCAGTATACG 59.822 44.000 0.00 0.00 36.68 3.06
216 230 5.333416 GCTAAATCAGGAAAGCAGTATACGC 60.333 44.000 10.47 10.47 35.05 4.42
218 232 1.828595 TCAGGAAAGCAGTATACGCCA 59.171 47.619 13.61 0.00 0.00 5.69
219 233 2.235155 TCAGGAAAGCAGTATACGCCAA 59.765 45.455 13.61 0.00 0.00 4.52
220 234 2.351726 CAGGAAAGCAGTATACGCCAAC 59.648 50.000 13.61 7.25 0.00 3.77
221 235 2.027561 AGGAAAGCAGTATACGCCAACA 60.028 45.455 13.61 0.00 0.00 3.33
225 244 1.006832 GCAGTATACGCCAACACCAG 58.993 55.000 8.05 0.00 0.00 4.00
233 252 1.883021 GCCAACACCAGGTATGCAC 59.117 57.895 0.00 0.00 0.00 4.57
238 257 0.246635 ACACCAGGTATGCACGAGAC 59.753 55.000 0.00 0.00 0.00 3.36
274 293 2.076100 TCACATTGCGCCAAGTCTAAG 58.924 47.619 4.18 0.00 0.00 2.18
285 305 5.592054 CGCCAAGTCTAAGACTCATAATGA 58.408 41.667 0.00 0.00 42.59 2.57
378 425 0.389426 TTCTACAAAGCGTCCGGAGC 60.389 55.000 3.06 11.39 0.00 4.70
379 426 1.810030 CTACAAAGCGTCCGGAGCC 60.810 63.158 18.51 7.59 34.64 4.70
380 427 2.501223 CTACAAAGCGTCCGGAGCCA 62.501 60.000 18.51 0.00 34.64 4.75
409 460 2.482664 GCTATGCAGAGCTCAGCTACAA 60.483 50.000 28.43 11.54 39.88 2.41
466 520 1.520342 GCGCTAGCTAGCTGCAACT 60.520 57.895 35.85 1.87 46.85 3.16
490 559 2.530958 GAATTTCGGGCCGGAGACCA 62.531 60.000 27.98 1.33 0.00 4.02
496 567 3.462678 GGCCGGAGACCAGAGACC 61.463 72.222 5.05 0.00 0.00 3.85
498 569 2.060980 GCCGGAGACCAGAGACCAT 61.061 63.158 5.05 0.00 0.00 3.55
512 587 3.083349 CCATCTGCCCGGTCTGGA 61.083 66.667 0.00 0.00 42.00 3.86
522 597 1.002134 CGGTCTGGATGCTTTGGGT 60.002 57.895 0.00 0.00 0.00 4.51
527 602 3.193479 GGTCTGGATGCTTTGGGTAAAAG 59.807 47.826 0.00 0.00 46.90 2.27
534 609 5.122239 GGATGCTTTGGGTAAAAGAATTTGC 59.878 40.000 2.10 0.00 43.25 3.68
535 610 5.934043 GATGCTTTGGGTAAAAGAATTTGCT 59.066 36.000 2.10 0.00 43.25 3.91
573 651 6.889198 TCAGCTAGCTTTACCACTTGATTAT 58.111 36.000 16.46 0.00 0.00 1.28
587 665 9.607333 ACCACTTGATTATAGGAGAGATATTGA 57.393 33.333 0.00 0.00 0.00 2.57
612 690 2.516909 GGACCCCAACCCAAACGA 59.483 61.111 0.00 0.00 0.00 3.85
630 709 4.271016 GCCAATCCTAGCCCGGGG 62.271 72.222 25.28 9.31 0.00 5.73
643 722 1.977009 CCGGGGCAGGTTCCTTTTC 60.977 63.158 0.00 0.00 0.00 2.29
645 724 0.326927 CGGGGCAGGTTCCTTTTCTA 59.673 55.000 0.00 0.00 0.00 2.10
646 725 1.679032 CGGGGCAGGTTCCTTTTCTAG 60.679 57.143 0.00 0.00 0.00 2.43
655 734 6.325596 CAGGTTCCTTTTCTAGCTTAATTGC 58.674 40.000 0.00 0.00 0.00 3.56
657 736 6.665248 AGGTTCCTTTTCTAGCTTAATTGCAT 59.335 34.615 0.00 0.00 34.99 3.96
672 751 8.802267 GCTTAATTGCATTATATACTTCCCCAA 58.198 33.333 0.00 0.00 0.00 4.12
694 773 3.857157 AGTTCCTTGCTTAGTTCCACA 57.143 42.857 0.00 0.00 0.00 4.17
697 776 3.126001 TCCTTGCTTAGTTCCACAGTG 57.874 47.619 0.00 0.00 0.00 3.66
698 777 2.154462 CCTTGCTTAGTTCCACAGTGG 58.846 52.381 14.19 14.19 39.43 4.00
730 809 0.178995 TGCTCACTCCACATGCCAAA 60.179 50.000 0.00 0.00 0.00 3.28
732 811 1.340889 GCTCACTCCACATGCCAAAAA 59.659 47.619 0.00 0.00 0.00 1.94
754 847 3.728385 ATTCCTCCACTAGCTGCTTTT 57.272 42.857 7.79 0.00 0.00 2.27
755 848 2.479566 TCCTCCACTAGCTGCTTTTG 57.520 50.000 7.79 5.30 0.00 2.44
772 865 5.792631 GCTTTTGCATGCTTTATCATTGAC 58.207 37.500 20.33 0.00 46.58 3.18
773 866 5.349270 GCTTTTGCATGCTTTATCATTGACA 59.651 36.000 20.33 0.00 46.58 3.58
802 897 4.761235 AGTTTGATGTGACATGAGCAAG 57.239 40.909 1.23 0.00 0.00 4.01
853 949 9.595823 GCTTAACTTCTGACTATAAATACACCA 57.404 33.333 0.00 0.00 0.00 4.17
911 1007 1.863325 AGCCAGCTTCTCTCATCTCA 58.137 50.000 0.00 0.00 0.00 3.27
951 1060 0.613012 ATTCCAAGCTTGAGGCACCC 60.613 55.000 28.05 0.00 44.79 4.61
954 1063 1.304713 CAAGCTTGAGGCACCCCAT 60.305 57.895 22.31 0.00 44.79 4.00
964 1078 3.039011 GAGGCACCCCATCTTCTTACTA 58.961 50.000 0.00 0.00 0.00 1.82
969 1092 5.254115 GCACCCCATCTTCTTACTAGTTTT 58.746 41.667 0.00 0.00 0.00 2.43
970 1093 5.123979 GCACCCCATCTTCTTACTAGTTTTG 59.876 44.000 0.00 0.00 0.00 2.44
975 1098 6.094186 CCCATCTTCTTACTAGTTTTGCTTCC 59.906 42.308 0.00 0.00 0.00 3.46
995 1128 7.306205 CTTCCTAAGCAGAAATCTCAGAAAG 57.694 40.000 0.00 0.00 0.00 2.62
1137 1294 1.866015 TGGTCTCCCACAAGATCGAT 58.134 50.000 0.00 0.00 35.17 3.59
1149 1306 2.796593 CAAGATCGATGCGCTCATTGTA 59.203 45.455 9.73 0.00 35.89 2.41
1200 1357 4.529219 CTCGCGCTGGGCATGGTA 62.529 66.667 17.13 0.00 43.84 3.25
1252 1409 3.587061 TGACTTGGAGGCCAATTTCTCTA 59.413 43.478 5.01 0.00 43.07 2.43
1274 1431 2.750888 GCTTGGCGATGTTCGGTCC 61.751 63.158 0.00 0.00 40.84 4.46
1276 1433 0.953471 CTTGGCGATGTTCGGTCCAA 60.953 55.000 8.16 8.16 38.85 3.53
1284 1441 5.557237 CGATGTTCGGTCCAAAGAATGGC 62.557 52.174 0.00 0.00 41.87 4.40
1329 1486 4.383118 CGAACACTACATCCCCTCTTCAAT 60.383 45.833 0.00 0.00 0.00 2.57
1332 1489 4.723789 ACACTACATCCCCTCTTCAATGAT 59.276 41.667 0.00 0.00 0.00 2.45
1338 1495 3.125656 TCCCCTCTTCAATGATGACCAT 58.874 45.455 0.00 0.00 34.61 3.55
1433 1590 3.389002 TCGGTCATGGATGTGATCAAGAT 59.611 43.478 0.00 0.00 0.00 2.40
1439 1596 6.016777 GTCATGGATGTGATCAAGATAAACCC 60.017 42.308 0.00 0.00 0.00 4.11
1575 1736 2.139323 TGCATGTACCTCGGTCTAGT 57.861 50.000 0.00 0.00 0.00 2.57
1578 1739 2.623889 GCATGTACCTCGGTCTAGTGAT 59.376 50.000 0.00 0.00 0.00 3.06
1581 1742 5.661458 CATGTACCTCGGTCTAGTGATTTT 58.339 41.667 0.00 0.00 0.00 1.82
1611 1772 6.926630 TTTTAGGTGCCCACAAATTAGAAT 57.073 33.333 0.40 0.00 0.00 2.40
1612 1773 6.926630 TTTAGGTGCCCACAAATTAGAATT 57.073 33.333 0.40 0.00 0.00 2.17
1664 1830 3.469899 TGCTTGAAAAACGATGATCCG 57.530 42.857 0.00 0.00 0.00 4.18
1734 1908 0.681175 CTTGCCCAACTTTTCCCCTG 59.319 55.000 0.00 0.00 0.00 4.45
1741 1915 3.089284 CCAACTTTTCCCCTGTACCATC 58.911 50.000 0.00 0.00 0.00 3.51
1742 1916 3.089284 CAACTTTTCCCCTGTACCATCC 58.911 50.000 0.00 0.00 0.00 3.51
1774 1948 0.957395 CCGCACCTCACAAAGCTGAT 60.957 55.000 0.00 0.00 0.00 2.90
1797 1971 8.967918 TGATTGTATATATGCAGTACTCCTACC 58.032 37.037 3.63 0.00 0.00 3.18
1799 1973 8.895141 TTGTATATATGCAGTACTCCTACCAT 57.105 34.615 3.63 0.00 0.00 3.55
1803 1977 1.341679 TGCAGTACTCCTACCATCGGT 60.342 52.381 0.00 0.00 40.16 4.69
1846 2022 4.401202 TGTTTTCTTTCACTTGAAGTCCCC 59.599 41.667 0.00 0.00 35.21 4.81
1851 2027 5.020132 TCTTTCACTTGAAGTCCCCAAAAA 58.980 37.500 0.00 0.00 35.21 1.94
1884 2060 7.513371 AAAATGCCAACAATTGACATCAAAT 57.487 28.000 13.59 0.00 39.55 2.32
1887 2063 3.125658 GCCAACAATTGACATCAAATGGC 59.874 43.478 13.59 19.37 42.37 4.40
1894 2070 7.486647 ACAATTGACATCAAATGGCTTCTATC 58.513 34.615 13.59 0.00 40.17 2.08
1898 2074 7.129457 TGACATCAAATGGCTTCTATCTAGT 57.871 36.000 0.00 0.00 39.69 2.57
1902 2078 7.877097 ACATCAAATGGCTTCTATCTAGTGATC 59.123 37.037 0.00 0.00 32.61 2.92
1903 2079 7.609097 TCAAATGGCTTCTATCTAGTGATCT 57.391 36.000 0.00 0.00 34.32 2.75
1904 2080 8.712228 TCAAATGGCTTCTATCTAGTGATCTA 57.288 34.615 0.00 0.00 34.32 1.98
1905 2081 9.147732 TCAAATGGCTTCTATCTAGTGATCTAA 57.852 33.333 0.00 0.00 34.32 2.10
1914 2090 8.554835 TCTATCTAGTGATCTAATGAACTCCG 57.445 38.462 0.00 0.00 34.32 4.63
1918 2094 3.068873 AGTGATCTAATGAACTCCGAGGC 59.931 47.826 0.00 0.00 0.00 4.70
1939 2115 2.735134 CAAACCTACACCGCAAGTAGTC 59.265 50.000 0.00 0.00 37.78 2.59
1949 2125 1.268589 CGCAAGTAGTCCATCGTCGAT 60.269 52.381 0.75 0.75 0.00 3.59
1952 2128 3.489398 GCAAGTAGTCCATCGTCGATTCT 60.489 47.826 4.63 7.21 0.00 2.40
1953 2129 4.673441 CAAGTAGTCCATCGTCGATTCTT 58.327 43.478 4.63 1.72 0.00 2.52
1969 2145 1.860676 TCTTGACGCTACAACACACC 58.139 50.000 0.00 0.00 0.00 4.16
1970 2146 0.865769 CTTGACGCTACAACACACCC 59.134 55.000 0.00 0.00 0.00 4.61
1971 2147 0.466543 TTGACGCTACAACACACCCT 59.533 50.000 0.00 0.00 0.00 4.34
2001 2179 1.152963 ACACACACACCTTGCCCTC 60.153 57.895 0.00 0.00 0.00 4.30
2024 2202 4.337013 CCCCGTGGCTGCTTAATT 57.663 55.556 0.00 0.00 0.00 1.40
2025 2203 2.106844 CCCCGTGGCTGCTTAATTC 58.893 57.895 0.00 0.00 0.00 2.17
2030 2208 1.398390 CGTGGCTGCTTAATTCTGGAC 59.602 52.381 0.00 0.00 0.00 4.02
2036 2214 3.600388 CTGCTTAATTCTGGACGAACCT 58.400 45.455 0.00 0.00 39.86 3.50
2037 2215 4.003648 CTGCTTAATTCTGGACGAACCTT 58.996 43.478 0.00 0.00 39.86 3.50
2072 2250 3.645212 CCCTCTTCCATGAAGCTCATCTA 59.355 47.826 0.00 0.00 39.29 1.98
2076 2254 4.964897 TCTTCCATGAAGCTCATCTAGGAA 59.035 41.667 0.00 10.00 39.29 3.36
2082 2260 4.194640 TGAAGCTCATCTAGGAAATGCAC 58.805 43.478 0.00 0.00 0.00 4.57
2084 2262 3.806380 AGCTCATCTAGGAAATGCACTG 58.194 45.455 0.00 0.00 0.00 3.66
2090 2268 3.445008 TCTAGGAAATGCACTGACCTCT 58.555 45.455 6.80 0.00 32.90 3.69
2091 2269 2.486472 AGGAAATGCACTGACCTCTG 57.514 50.000 0.00 0.00 0.00 3.35
2105 2283 0.918983 CCTCTGGGCCTTGATACCAA 59.081 55.000 4.53 0.00 33.13 3.67
2125 2303 0.972471 CATCTGGCCCTTGGTTTCCC 60.972 60.000 0.00 0.00 0.00 3.97
2145 2323 7.669089 TTCCCTTGTAGTTCTTTGGAAAATT 57.331 32.000 0.00 0.00 32.81 1.82
2149 2327 7.418483 CCCTTGTAGTTCTTTGGAAAATTTGGA 60.418 37.037 0.00 0.00 32.81 3.53
2153 2331 7.978975 TGTAGTTCTTTGGAAAATTTGGAACTG 59.021 33.333 18.75 3.00 40.94 3.16
2154 2332 6.348498 AGTTCTTTGGAAAATTTGGAACTGG 58.652 36.000 0.00 0.00 39.85 4.00
2160 2338 6.552445 TGGAAAATTTGGAACTGGAGAAAA 57.448 33.333 0.00 0.00 0.00 2.29
2179 2357 3.488778 AAGCTCTAGCCTTCCATGATG 57.511 47.619 0.00 0.00 43.38 3.07
2221 2402 8.347035 GGTTAACTATTAGAAACTTTGTGCACA 58.653 33.333 17.42 17.42 0.00 4.57
2231 2412 2.499289 ACTTTGTGCACAATTTGTCCCA 59.501 40.909 31.48 13.96 35.55 4.37
2239 2420 3.196254 GCACAATTTGTCCCAATGGATCT 59.804 43.478 0.00 0.00 44.28 2.75
2243 2424 6.813152 CACAATTTGTCCCAATGGATCTTTAC 59.187 38.462 0.00 0.00 44.28 2.01
2247 2428 4.006989 TGTCCCAATGGATCTTTACGTTG 58.993 43.478 0.00 0.00 44.28 4.10
2250 2431 4.941263 TCCCAATGGATCTTTACGTTGAAG 59.059 41.667 0.00 0.00 36.04 3.02
2266 2447 4.137543 GTTGAAGGACATCTCACAAAGGT 58.862 43.478 0.00 0.00 0.00 3.50
2267 2448 5.305585 GTTGAAGGACATCTCACAAAGGTA 58.694 41.667 0.00 0.00 0.00 3.08
2273 2454 3.403038 ACATCTCACAAAGGTACACTGC 58.597 45.455 0.00 0.00 0.00 4.40
2288 2469 2.012237 CTGCTAAGTCATGGCAGCG 58.988 57.895 0.00 0.00 45.04 5.18
2292 2473 2.158971 TGCTAAGTCATGGCAGCGATAA 60.159 45.455 0.00 0.00 36.81 1.75
2293 2474 2.221981 GCTAAGTCATGGCAGCGATAAC 59.778 50.000 0.00 0.00 0.00 1.89
2294 2475 2.698855 AAGTCATGGCAGCGATAACT 57.301 45.000 0.00 0.00 0.00 2.24
2295 2476 3.819564 AAGTCATGGCAGCGATAACTA 57.180 42.857 0.00 0.00 0.00 2.24
2296 2477 4.342862 AAGTCATGGCAGCGATAACTAT 57.657 40.909 0.00 0.00 0.00 2.12
2297 2478 3.919216 AGTCATGGCAGCGATAACTATC 58.081 45.455 0.00 0.00 0.00 2.08
2298 2479 2.996621 GTCATGGCAGCGATAACTATCC 59.003 50.000 0.00 0.00 0.00 2.59
2299 2480 2.899900 TCATGGCAGCGATAACTATCCT 59.100 45.455 0.00 0.00 0.00 3.24
2300 2481 3.056536 TCATGGCAGCGATAACTATCCTC 60.057 47.826 0.00 0.00 0.00 3.71
2301 2482 1.618837 TGGCAGCGATAACTATCCTCC 59.381 52.381 0.00 0.00 0.00 4.30
2302 2483 1.066787 GGCAGCGATAACTATCCTCCC 60.067 57.143 0.00 0.00 0.00 4.30
2303 2484 1.402984 GCAGCGATAACTATCCTCCCG 60.403 57.143 0.00 0.00 0.00 5.14
2304 2485 0.889306 AGCGATAACTATCCTCCCGC 59.111 55.000 0.00 0.00 41.22 6.13
2305 2486 0.108756 GCGATAACTATCCTCCCGCC 60.109 60.000 0.00 0.00 35.79 6.13
2306 2487 1.546961 CGATAACTATCCTCCCGCCT 58.453 55.000 0.00 0.00 0.00 5.52
2307 2488 1.473278 CGATAACTATCCTCCCGCCTC 59.527 57.143 0.00 0.00 0.00 4.70
2308 2489 1.473278 GATAACTATCCTCCCGCCTCG 59.527 57.143 0.00 0.00 0.00 4.63
2309 2490 0.475475 TAACTATCCTCCCGCCTCGA 59.525 55.000 0.00 0.00 0.00 4.04
2310 2491 0.178958 AACTATCCTCCCGCCTCGAT 60.179 55.000 0.00 0.00 0.00 3.59
2311 2492 0.896019 ACTATCCTCCCGCCTCGATG 60.896 60.000 0.00 0.00 0.00 3.84
2317 2498 1.455032 TCCCGCCTCGATGCTCTTA 60.455 57.895 11.00 0.00 0.00 2.10
2318 2499 0.827925 TCCCGCCTCGATGCTCTTAT 60.828 55.000 11.00 0.00 0.00 1.73
2319 2500 0.668706 CCCGCCTCGATGCTCTTATG 60.669 60.000 11.00 0.00 0.00 1.90
2331 2512 7.896811 TCGATGCTCTTATGAAATATGGTACT 58.103 34.615 0.00 0.00 0.00 2.73
2347 2528 4.647611 TGGTACTTGTGATGTTTAGGTGG 58.352 43.478 0.00 0.00 0.00 4.61
2348 2529 4.103469 TGGTACTTGTGATGTTTAGGTGGT 59.897 41.667 0.00 0.00 0.00 4.16
2349 2530 5.307456 TGGTACTTGTGATGTTTAGGTGGTA 59.693 40.000 0.00 0.00 0.00 3.25
2350 2531 6.183361 TGGTACTTGTGATGTTTAGGTGGTAA 60.183 38.462 0.00 0.00 0.00 2.85
2351 2532 6.148315 GGTACTTGTGATGTTTAGGTGGTAAC 59.852 42.308 0.00 0.00 0.00 2.50
2366 2547 4.676799 TGGTAACATATTTTGGTGGGGA 57.323 40.909 0.00 0.00 46.17 4.81
2367 2548 5.011982 TGGTAACATATTTTGGTGGGGAA 57.988 39.130 0.00 0.00 46.17 3.97
2368 2549 5.020132 TGGTAACATATTTTGGTGGGGAAG 58.980 41.667 0.00 0.00 46.17 3.46
2369 2550 4.142026 GGTAACATATTTTGGTGGGGAAGC 60.142 45.833 0.00 0.00 0.00 3.86
2370 2551 3.473113 ACATATTTTGGTGGGGAAGCT 57.527 42.857 0.00 0.00 0.00 3.74
2371 2552 3.365472 ACATATTTTGGTGGGGAAGCTC 58.635 45.455 0.00 0.00 0.00 4.09
2372 2553 2.525105 TATTTTGGTGGGGAAGCTCC 57.475 50.000 0.00 0.00 35.23 4.70
2394 2575 4.058797 CCCCCGTGTTGACTGTTC 57.941 61.111 0.00 0.00 0.00 3.18
2395 2576 1.147376 CCCCCGTGTTGACTGTTCA 59.853 57.895 0.00 0.00 0.00 3.18
2396 2577 0.464735 CCCCCGTGTTGACTGTTCAA 60.465 55.000 0.00 0.00 39.55 2.69
2397 2578 1.384525 CCCCGTGTTGACTGTTCAAA 58.615 50.000 0.00 0.00 43.52 2.69
2401 2871 3.486875 CCCGTGTTGACTGTTCAAAGAAC 60.487 47.826 3.05 3.05 43.52 3.01
2434 2913 8.190122 TGATTCAAATTGTATTGTCCACATAGC 58.810 33.333 0.00 0.00 0.00 2.97
2438 2917 7.812191 TCAAATTGTATTGTCCACATAGCAAAC 59.188 33.333 0.00 0.00 0.00 2.93
2463 2942 5.344743 TCACATTGAAAGACCTAGCCTAG 57.655 43.478 0.00 0.00 0.00 3.02
2516 2995 3.452627 AGTTAGTACTCCCTCCATGCTTG 59.547 47.826 0.00 0.00 0.00 4.01
2517 2996 1.958288 AGTACTCCCTCCATGCTTGT 58.042 50.000 0.00 0.00 0.00 3.16
2518 2997 2.269940 AGTACTCCCTCCATGCTTGTT 58.730 47.619 0.00 0.00 0.00 2.83
2519 2998 2.026822 AGTACTCCCTCCATGCTTGTTG 60.027 50.000 0.00 0.00 0.00 3.33
2520 2999 0.773644 ACTCCCTCCATGCTTGTTGT 59.226 50.000 0.00 0.00 0.00 3.32
2521 3000 1.985159 ACTCCCTCCATGCTTGTTGTA 59.015 47.619 0.00 0.00 0.00 2.41
2522 3001 2.375174 ACTCCCTCCATGCTTGTTGTAA 59.625 45.455 0.00 0.00 0.00 2.41
2523 3002 2.749621 CTCCCTCCATGCTTGTTGTAAC 59.250 50.000 0.00 0.00 0.00 2.50
2524 3003 1.468520 CCCTCCATGCTTGTTGTAACG 59.531 52.381 0.00 0.00 0.00 3.18
2525 3004 1.135689 CCTCCATGCTTGTTGTAACGC 60.136 52.381 0.00 0.00 0.00 4.84
2526 3005 0.878416 TCCATGCTTGTTGTAACGCC 59.122 50.000 0.00 0.00 0.00 5.68
2527 3006 0.109319 CCATGCTTGTTGTAACGCCC 60.109 55.000 0.00 0.00 0.00 6.13
2528 3007 0.454285 CATGCTTGTTGTAACGCCCG 60.454 55.000 0.00 0.00 0.00 6.13
2529 3008 1.582610 ATGCTTGTTGTAACGCCCGG 61.583 55.000 0.00 0.00 0.00 5.73
2530 3009 1.962306 GCTTGTTGTAACGCCCGGA 60.962 57.895 0.73 0.00 0.00 5.14
2531 3010 1.303091 GCTTGTTGTAACGCCCGGAT 61.303 55.000 0.73 0.00 0.00 4.18
2532 3011 2.008045 GCTTGTTGTAACGCCCGGATA 61.008 52.381 0.73 0.00 0.00 2.59
2533 3012 2.348660 CTTGTTGTAACGCCCGGATAA 58.651 47.619 0.73 0.00 0.00 1.75
2534 3013 2.695127 TGTTGTAACGCCCGGATAAT 57.305 45.000 0.73 0.00 0.00 1.28
2535 3014 2.553086 TGTTGTAACGCCCGGATAATC 58.447 47.619 0.73 0.00 0.00 1.75
2536 3015 2.093606 TGTTGTAACGCCCGGATAATCA 60.094 45.455 0.73 0.00 0.00 2.57
2537 3016 2.937799 GTTGTAACGCCCGGATAATCAA 59.062 45.455 0.73 0.00 0.00 2.57
2538 3017 2.828877 TGTAACGCCCGGATAATCAAG 58.171 47.619 0.73 0.00 0.00 3.02
2539 3018 1.529865 GTAACGCCCGGATAATCAAGC 59.470 52.381 0.73 0.00 0.00 4.01
2540 3019 0.180406 AACGCCCGGATAATCAAGCT 59.820 50.000 0.73 0.00 0.00 3.74
2541 3020 1.045407 ACGCCCGGATAATCAAGCTA 58.955 50.000 0.73 0.00 0.00 3.32
2542 3021 1.270147 ACGCCCGGATAATCAAGCTAC 60.270 52.381 0.73 0.00 0.00 3.58
2543 3022 1.270094 CGCCCGGATAATCAAGCTACA 60.270 52.381 0.73 0.00 0.00 2.74
2544 3023 2.417719 GCCCGGATAATCAAGCTACAG 58.582 52.381 0.73 0.00 0.00 2.74
2545 3024 2.224305 GCCCGGATAATCAAGCTACAGT 60.224 50.000 0.73 0.00 0.00 3.55
2546 3025 3.006537 GCCCGGATAATCAAGCTACAGTA 59.993 47.826 0.73 0.00 0.00 2.74
2547 3026 4.502604 GCCCGGATAATCAAGCTACAGTAA 60.503 45.833 0.73 0.00 0.00 2.24
2548 3027 5.794894 CCCGGATAATCAAGCTACAGTAAT 58.205 41.667 0.73 0.00 0.00 1.89
2549 3028 5.869888 CCCGGATAATCAAGCTACAGTAATC 59.130 44.000 0.73 0.00 0.00 1.75
2550 3029 5.869888 CCGGATAATCAAGCTACAGTAATCC 59.130 44.000 0.00 0.00 0.00 3.01
2551 3030 5.869888 CGGATAATCAAGCTACAGTAATCCC 59.130 44.000 0.00 0.00 0.00 3.85
2552 3031 6.518369 CGGATAATCAAGCTACAGTAATCCCA 60.518 42.308 0.00 0.00 0.00 4.37
2553 3032 6.651225 GGATAATCAAGCTACAGTAATCCCAC 59.349 42.308 0.00 0.00 0.00 4.61
2554 3033 3.520290 TCAAGCTACAGTAATCCCACG 57.480 47.619 0.00 0.00 0.00 4.94
2555 3034 1.933853 CAAGCTACAGTAATCCCACGC 59.066 52.381 0.00 0.00 0.00 5.34
2556 3035 1.486211 AGCTACAGTAATCCCACGCT 58.514 50.000 0.00 0.00 0.00 5.07
2557 3036 2.662866 AGCTACAGTAATCCCACGCTA 58.337 47.619 0.00 0.00 0.00 4.26
2558 3037 3.028850 AGCTACAGTAATCCCACGCTAA 58.971 45.455 0.00 0.00 0.00 3.09
2559 3038 3.641906 AGCTACAGTAATCCCACGCTAAT 59.358 43.478 0.00 0.00 0.00 1.73
2560 3039 3.741344 GCTACAGTAATCCCACGCTAATG 59.259 47.826 0.00 0.00 0.00 1.90
2561 3040 3.194005 ACAGTAATCCCACGCTAATGG 57.806 47.619 0.00 0.00 39.71 3.16
2562 3041 2.504175 ACAGTAATCCCACGCTAATGGT 59.496 45.455 0.00 0.00 38.16 3.55
2563 3042 2.872245 CAGTAATCCCACGCTAATGGTG 59.128 50.000 0.00 0.00 38.16 4.17
2564 3043 2.504175 AGTAATCCCACGCTAATGGTGT 59.496 45.455 0.00 0.00 38.16 4.16
2565 3044 2.038387 AATCCCACGCTAATGGTGTC 57.962 50.000 0.00 0.00 38.16 3.67
2566 3045 0.908910 ATCCCACGCTAATGGTGTCA 59.091 50.000 0.00 0.00 38.16 3.58
2567 3046 0.036765 TCCCACGCTAATGGTGTCAC 60.037 55.000 0.00 0.00 38.16 3.67
2568 3047 1.358725 CCCACGCTAATGGTGTCACG 61.359 60.000 0.00 0.00 38.16 4.35
2569 3048 0.669318 CCACGCTAATGGTGTCACGT 60.669 55.000 0.00 0.00 36.40 4.49
2570 3049 0.713883 CACGCTAATGGTGTCACGTC 59.286 55.000 0.00 0.00 36.40 4.34
2571 3050 0.315886 ACGCTAATGGTGTCACGTCA 59.684 50.000 0.00 0.00 32.61 4.35
2572 3051 0.713883 CGCTAATGGTGTCACGTCAC 59.286 55.000 0.00 0.00 37.57 3.67
2578 3057 4.827481 GTGTCACGTCACCACAGT 57.173 55.556 0.00 0.00 32.81 3.55
2579 3058 3.059603 GTGTCACGTCACCACAGTT 57.940 52.632 0.00 0.00 32.81 3.16
2580 3059 2.212869 GTGTCACGTCACCACAGTTA 57.787 50.000 0.00 0.00 32.81 2.24
2581 3060 1.856597 GTGTCACGTCACCACAGTTAC 59.143 52.381 0.00 0.00 32.81 2.50
2582 3061 1.752498 TGTCACGTCACCACAGTTACT 59.248 47.619 0.00 0.00 0.00 2.24
2583 3062 2.124903 GTCACGTCACCACAGTTACTG 58.875 52.381 11.21 11.21 37.52 2.74
2584 3063 1.752498 TCACGTCACCACAGTTACTGT 59.248 47.619 12.76 12.76 46.51 3.55
2585 3064 2.166870 TCACGTCACCACAGTTACTGTT 59.833 45.455 16.06 0.00 42.59 3.16
2586 3065 2.284150 CACGTCACCACAGTTACTGTTG 59.716 50.000 16.06 14.89 42.59 3.33
2587 3066 1.260561 CGTCACCACAGTTACTGTTGC 59.739 52.381 16.06 8.07 42.59 4.17
2588 3067 2.561569 GTCACCACAGTTACTGTTGCT 58.438 47.619 16.06 1.03 42.59 3.91
2589 3068 3.724374 GTCACCACAGTTACTGTTGCTA 58.276 45.455 16.06 1.52 42.59 3.49
2590 3069 4.124238 GTCACCACAGTTACTGTTGCTAA 58.876 43.478 16.06 0.00 42.59 3.09
2591 3070 4.755123 GTCACCACAGTTACTGTTGCTAAT 59.245 41.667 16.06 0.00 42.59 1.73
2592 3071 4.994852 TCACCACAGTTACTGTTGCTAATC 59.005 41.667 16.06 0.00 42.59 1.75
2593 3072 4.997395 CACCACAGTTACTGTTGCTAATCT 59.003 41.667 16.06 0.00 42.59 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.123979 CCAGCCTCGCTTTTCTTTTTAGTAT 59.876 40.000 0.00 0.00 36.40 2.12
1 2 4.454504 CCAGCCTCGCTTTTCTTTTTAGTA 59.545 41.667 0.00 0.00 36.40 1.82
2 3 3.253432 CCAGCCTCGCTTTTCTTTTTAGT 59.747 43.478 0.00 0.00 36.40 2.24
3 4 3.366374 CCCAGCCTCGCTTTTCTTTTTAG 60.366 47.826 0.00 0.00 36.40 1.85
4 5 2.556622 CCCAGCCTCGCTTTTCTTTTTA 59.443 45.455 0.00 0.00 36.40 1.52
5 6 1.341209 CCCAGCCTCGCTTTTCTTTTT 59.659 47.619 0.00 0.00 36.40 1.94
6 7 0.961753 CCCAGCCTCGCTTTTCTTTT 59.038 50.000 0.00 0.00 36.40 2.27
7 8 0.110486 TCCCAGCCTCGCTTTTCTTT 59.890 50.000 0.00 0.00 36.40 2.52
8 9 0.606673 GTCCCAGCCTCGCTTTTCTT 60.607 55.000 0.00 0.00 36.40 2.52
9 10 1.003233 GTCCCAGCCTCGCTTTTCT 60.003 57.895 0.00 0.00 36.40 2.52
10 11 1.003233 AGTCCCAGCCTCGCTTTTC 60.003 57.895 0.00 0.00 36.40 2.29
11 12 1.003233 GAGTCCCAGCCTCGCTTTT 60.003 57.895 0.00 0.00 36.40 2.27
12 13 2.665603 GAGTCCCAGCCTCGCTTT 59.334 61.111 0.00 0.00 36.40 3.51
13 14 3.764466 CGAGTCCCAGCCTCGCTT 61.764 66.667 0.00 0.00 44.42 4.68
17 18 1.606737 GCATATTCGAGTCCCAGCCTC 60.607 57.143 0.00 0.00 0.00 4.70
18 19 0.394565 GCATATTCGAGTCCCAGCCT 59.605 55.000 0.00 0.00 0.00 4.58
19 20 0.946221 CGCATATTCGAGTCCCAGCC 60.946 60.000 0.00 0.00 0.00 4.85
20 21 0.032130 TCGCATATTCGAGTCCCAGC 59.968 55.000 0.00 0.00 34.09 4.85
28 29 8.699749 CATCTGTATTTAAACTCGCATATTCGA 58.300 33.333 0.00 0.00 36.94 3.71
29 30 8.699749 TCATCTGTATTTAAACTCGCATATTCG 58.300 33.333 0.00 0.00 0.00 3.34
46 47 8.883731 GCCGCATAAATTTAGTATCATCTGTAT 58.116 33.333 3.94 0.00 0.00 2.29
47 48 7.875554 TGCCGCATAAATTTAGTATCATCTGTA 59.124 33.333 3.94 0.00 0.00 2.74
48 49 6.710295 TGCCGCATAAATTTAGTATCATCTGT 59.290 34.615 3.94 0.00 0.00 3.41
49 50 7.132694 TGCCGCATAAATTTAGTATCATCTG 57.867 36.000 3.94 0.00 0.00 2.90
50 51 7.308589 GGTTGCCGCATAAATTTAGTATCATCT 60.309 37.037 3.94 0.00 0.00 2.90
51 52 6.801862 GGTTGCCGCATAAATTTAGTATCATC 59.198 38.462 3.94 0.00 0.00 2.92
52 53 6.264292 TGGTTGCCGCATAAATTTAGTATCAT 59.736 34.615 3.94 0.00 0.00 2.45
53 54 5.590663 TGGTTGCCGCATAAATTTAGTATCA 59.409 36.000 3.94 0.00 0.00 2.15
54 55 6.067263 TGGTTGCCGCATAAATTTAGTATC 57.933 37.500 3.94 0.00 0.00 2.24
55 56 6.458232 TTGGTTGCCGCATAAATTTAGTAT 57.542 33.333 3.94 0.00 0.00 2.12
56 57 5.899120 TTGGTTGCCGCATAAATTTAGTA 57.101 34.783 3.94 0.00 0.00 1.82
57 58 4.792521 TTGGTTGCCGCATAAATTTAGT 57.207 36.364 3.94 0.00 0.00 2.24
58 59 6.091986 ACAATTTGGTTGCCGCATAAATTTAG 59.908 34.615 15.30 10.73 41.69 1.85
59 60 5.934625 ACAATTTGGTTGCCGCATAAATTTA 59.065 32.000 15.30 0.00 41.69 1.40
60 61 4.759183 ACAATTTGGTTGCCGCATAAATTT 59.241 33.333 15.30 0.00 41.69 1.82
61 62 4.153835 CACAATTTGGTTGCCGCATAAATT 59.846 37.500 13.45 13.45 41.69 1.82
62 63 3.683822 CACAATTTGGTTGCCGCATAAAT 59.316 39.130 0.00 0.00 41.69 1.40
63 64 3.062763 CACAATTTGGTTGCCGCATAAA 58.937 40.909 0.00 0.00 41.69 1.40
64 65 2.611473 CCACAATTTGGTTGCCGCATAA 60.611 45.455 0.00 0.00 41.69 1.90
65 66 1.067283 CCACAATTTGGTTGCCGCATA 60.067 47.619 0.00 0.00 41.69 3.14
66 67 0.320596 CCACAATTTGGTTGCCGCAT 60.321 50.000 0.00 0.00 41.69 4.73
67 68 1.068753 CCACAATTTGGTTGCCGCA 59.931 52.632 0.78 0.00 41.69 5.69
68 69 1.667510 CCCACAATTTGGTTGCCGC 60.668 57.895 0.78 0.00 45.25 6.53
69 70 0.319469 GTCCCACAATTTGGTTGCCG 60.319 55.000 0.78 0.00 45.25 5.69
70 71 0.755686 TGTCCCACAATTTGGTTGCC 59.244 50.000 0.78 0.00 45.25 4.52
71 72 2.158971 ACTTGTCCCACAATTTGGTTGC 60.159 45.455 0.78 0.00 45.25 4.17
72 73 3.817709 ACTTGTCCCACAATTTGGTTG 57.182 42.857 0.78 0.00 45.25 3.77
75 76 5.782893 TTTCTACTTGTCCCACAATTTGG 57.217 39.130 0.78 1.03 46.47 3.28
86 87 5.642063 TGAATCCGGTGATTTTCTACTTGTC 59.358 40.000 0.00 0.00 41.30 3.18
87 88 5.556915 TGAATCCGGTGATTTTCTACTTGT 58.443 37.500 0.00 0.00 41.30 3.16
92 93 6.007703 ACCTTTTGAATCCGGTGATTTTCTA 58.992 36.000 0.00 0.00 41.30 2.10
94 95 5.134202 ACCTTTTGAATCCGGTGATTTTC 57.866 39.130 0.00 0.00 41.30 2.29
104 105 8.686334 TGCTAATTATCTCAACCTTTTGAATCC 58.314 33.333 0.00 0.00 41.34 3.01
110 111 6.886459 TGCTCTGCTAATTATCTCAACCTTTT 59.114 34.615 0.00 0.00 0.00 2.27
131 132 2.095059 GTGTGTTGGAATGGTGATGCTC 60.095 50.000 0.00 0.00 0.00 4.26
145 159 0.315059 GCACGTCGTCTTGTGTGTTG 60.315 55.000 0.00 0.00 38.36 3.33
151 165 1.080705 GCTAGGCACGTCGTCTTGT 60.081 57.895 0.00 0.00 0.00 3.16
159 173 2.373540 TTTCGTTATGCTAGGCACGT 57.626 45.000 0.00 0.00 43.04 4.49
160 174 3.944422 ATTTTCGTTATGCTAGGCACG 57.056 42.857 0.00 0.00 43.04 5.34
161 175 6.787085 AGATATTTTCGTTATGCTAGGCAC 57.213 37.500 0.00 0.00 43.04 5.01
162 176 6.426937 GGAAGATATTTTCGTTATGCTAGGCA 59.573 38.462 0.28 0.00 44.86 4.75
163 177 6.128254 GGGAAGATATTTTCGTTATGCTAGGC 60.128 42.308 0.28 0.00 0.00 3.93
166 180 7.390440 CCATGGGAAGATATTTTCGTTATGCTA 59.610 37.037 2.85 0.00 0.00 3.49
167 181 6.207417 CCATGGGAAGATATTTTCGTTATGCT 59.793 38.462 2.85 0.00 0.00 3.79
171 185 5.690865 AGCCATGGGAAGATATTTTCGTTA 58.309 37.500 15.13 0.00 0.00 3.18
175 189 8.181904 TGATTTAGCCATGGGAAGATATTTTC 57.818 34.615 15.13 0.00 0.00 2.29
190 204 3.439857 ACTGCTTTCCTGATTTAGCCA 57.560 42.857 0.00 0.00 32.73 4.75
193 207 5.177696 GGCGTATACTGCTTTCCTGATTTAG 59.822 44.000 15.76 0.00 0.00 1.85
198 212 1.828595 TGGCGTATACTGCTTTCCTGA 59.171 47.619 15.76 0.00 0.00 3.86
199 213 2.309528 TGGCGTATACTGCTTTCCTG 57.690 50.000 15.76 0.00 0.00 3.86
200 214 2.027561 TGTTGGCGTATACTGCTTTCCT 60.028 45.455 15.76 0.00 0.00 3.36
201 215 2.095372 GTGTTGGCGTATACTGCTTTCC 59.905 50.000 15.76 4.21 0.00 3.13
203 217 2.081462 GGTGTTGGCGTATACTGCTTT 58.919 47.619 15.76 0.00 0.00 3.51
206 220 1.006832 CTGGTGTTGGCGTATACTGC 58.993 55.000 10.11 10.11 0.00 4.40
207 221 1.066430 ACCTGGTGTTGGCGTATACTG 60.066 52.381 0.00 0.00 0.00 2.74
209 223 2.965572 TACCTGGTGTTGGCGTATAC 57.034 50.000 10.23 0.00 0.00 1.47
210 224 2.484065 GCATACCTGGTGTTGGCGTATA 60.484 50.000 10.23 0.00 0.00 1.47
211 225 1.745827 GCATACCTGGTGTTGGCGTAT 60.746 52.381 10.23 0.00 0.00 3.06
212 226 0.391927 GCATACCTGGTGTTGGCGTA 60.392 55.000 10.23 0.00 0.00 4.42
213 227 1.674322 GCATACCTGGTGTTGGCGT 60.674 57.895 10.23 0.00 0.00 5.68
215 229 1.883021 GTGCATACCTGGTGTTGGC 59.117 57.895 10.23 8.13 0.00 4.52
216 230 0.321210 TCGTGCATACCTGGTGTTGG 60.321 55.000 10.23 0.00 0.00 3.77
218 232 0.973632 TCTCGTGCATACCTGGTGTT 59.026 50.000 10.23 0.00 0.00 3.32
219 233 0.246635 GTCTCGTGCATACCTGGTGT 59.753 55.000 10.23 0.00 0.00 4.16
220 234 0.532573 AGTCTCGTGCATACCTGGTG 59.467 55.000 10.23 0.00 0.00 4.17
221 235 1.066858 CAAGTCTCGTGCATACCTGGT 60.067 52.381 4.05 4.05 0.00 4.00
225 244 2.604914 CACATCAAGTCTCGTGCATACC 59.395 50.000 0.00 0.00 0.00 2.73
233 252 2.872245 ACAACAACCACATCAAGTCTCG 59.128 45.455 0.00 0.00 0.00 4.04
259 278 1.343142 TGAGTCTTAGACTTGGCGCAA 59.657 47.619 16.60 0.00 43.53 4.85
260 279 0.966179 TGAGTCTTAGACTTGGCGCA 59.034 50.000 16.60 6.48 43.53 6.09
261 280 2.301577 ATGAGTCTTAGACTTGGCGC 57.698 50.000 16.60 0.00 43.53 6.53
274 293 8.173775 CACAAGTCTCAAACATCATTATGAGTC 58.826 37.037 0.29 0.00 40.11 3.36
285 305 5.242171 TCATGCATTCACAAGTCTCAAACAT 59.758 36.000 0.00 0.00 0.00 2.71
316 337 1.005630 GATCGATGGGAGCTTCCGG 60.006 63.158 6.55 0.00 37.43 5.14
356 382 1.614903 TCCGGACGCTTTGTAGAAAGA 59.385 47.619 16.08 0.00 41.12 2.52
357 383 1.993370 CTCCGGACGCTTTGTAGAAAG 59.007 52.381 0.00 7.97 41.49 2.62
358 384 1.938016 GCTCCGGACGCTTTGTAGAAA 60.938 52.381 15.90 0.00 0.00 2.52
359 385 0.389426 GCTCCGGACGCTTTGTAGAA 60.389 55.000 15.90 0.00 0.00 2.10
361 387 1.810030 GGCTCCGGACGCTTTGTAG 60.810 63.158 20.47 2.04 0.00 2.74
378 425 1.404391 CTCTGCATAGCTTTGCCTTGG 59.596 52.381 23.82 12.60 42.06 3.61
379 426 1.202268 GCTCTGCATAGCTTTGCCTTG 60.202 52.381 23.82 14.77 42.06 3.61
380 427 1.101331 GCTCTGCATAGCTTTGCCTT 58.899 50.000 23.82 0.00 42.06 4.35
398 445 3.621794 CTTTGTGTTGTTGTAGCTGAGC 58.378 45.455 0.00 0.00 0.00 4.26
403 450 2.119457 GCTGCTTTGTGTTGTTGTAGC 58.881 47.619 0.00 0.00 0.00 3.58
409 460 0.814457 TTTCCGCTGCTTTGTGTTGT 59.186 45.000 0.00 0.00 0.00 3.32
466 520 0.539901 TCCGGCCCGAAATTCCAAAA 60.540 50.000 3.71 0.00 0.00 2.44
490 559 2.039624 ACCGGGCAGATGGTCTCT 59.960 61.111 6.32 0.00 31.16 3.10
494 565 3.402681 CCAGACCGGGCAGATGGT 61.403 66.667 11.69 0.00 42.42 3.55
496 567 1.227764 CATCCAGACCGGGCAGATG 60.228 63.158 21.84 21.84 34.36 2.90
498 569 3.785859 GCATCCAGACCGGGCAGA 61.786 66.667 11.69 6.21 34.36 4.26
512 587 5.868454 AGCAAATTCTTTTACCCAAAGCAT 58.132 33.333 0.00 0.00 41.72 3.79
534 609 4.803088 GCTAGCTGATCGATGGCTTAATAG 59.197 45.833 22.08 15.86 37.50 1.73
535 610 4.464244 AGCTAGCTGATCGATGGCTTAATA 59.536 41.667 18.57 8.27 43.76 0.98
573 651 7.005296 GTCCCTAACTGTCAATATCTCTCCTA 58.995 42.308 0.00 0.00 0.00 2.94
587 665 1.138228 GGGTTGGGGTCCCTAACTGT 61.138 60.000 30.13 0.00 41.58 3.55
593 671 2.940124 GTTTGGGTTGGGGTCCCT 59.060 61.111 8.15 0.00 44.84 4.20
610 688 2.029666 CGGGCTAGGATTGGCTCG 59.970 66.667 0.00 0.00 45.78 5.03
612 690 3.171388 CCCGGGCTAGGATTGGCT 61.171 66.667 8.08 0.00 0.00 4.75
630 709 6.325596 CAATTAAGCTAGAAAAGGAACCTGC 58.674 40.000 0.00 0.00 0.00 4.85
645 724 8.170061 TGGGGAAGTATATAATGCAATTAAGCT 58.830 33.333 0.00 0.00 42.96 3.74
646 725 8.348285 TGGGGAAGTATATAATGCAATTAAGC 57.652 34.615 0.00 0.00 42.96 3.09
655 734 8.996651 AGGAACTTTTGGGGAAGTATATAATG 57.003 34.615 0.00 0.00 38.86 1.90
672 751 4.532834 TGTGGAACTAAGCAAGGAACTTT 58.467 39.130 0.00 0.00 42.93 2.66
694 773 3.762288 TGAGCACTATAAGAACGTCCACT 59.238 43.478 0.00 0.00 0.00 4.00
697 776 4.352887 GAGTGAGCACTATAAGAACGTCC 58.647 47.826 2.65 0.00 42.66 4.79
698 777 4.142447 TGGAGTGAGCACTATAAGAACGTC 60.142 45.833 2.65 0.00 42.66 4.34
701 780 5.073311 TGTGGAGTGAGCACTATAAGAAC 57.927 43.478 2.65 0.00 42.66 3.01
730 809 4.039603 AGCAGCTAGTGGAGGAATTTTT 57.960 40.909 0.00 0.00 0.00 1.94
732 811 3.728385 AAGCAGCTAGTGGAGGAATTT 57.272 42.857 0.00 0.00 0.00 1.82
733 812 3.728385 AAAGCAGCTAGTGGAGGAATT 57.272 42.857 0.00 0.00 0.00 2.17
734 813 3.350833 CAAAAGCAGCTAGTGGAGGAAT 58.649 45.455 0.00 0.00 0.00 3.01
738 817 1.527034 TGCAAAAGCAGCTAGTGGAG 58.473 50.000 0.00 0.00 0.00 3.86
739 818 1.814394 CATGCAAAAGCAGCTAGTGGA 59.186 47.619 0.00 0.00 0.00 4.02
754 847 5.593502 TGGTATGTCAATGATAAAGCATGCA 59.406 36.000 21.98 0.00 0.00 3.96
755 848 6.075762 TGGTATGTCAATGATAAAGCATGC 57.924 37.500 10.51 10.51 0.00 4.06
768 861 7.148000 TGTCACATCAAACTTTTGGTATGTCAA 60.148 33.333 6.21 0.00 35.01 3.18
769 862 6.319911 TGTCACATCAAACTTTTGGTATGTCA 59.680 34.615 6.21 0.00 35.01 3.58
770 863 6.734137 TGTCACATCAAACTTTTGGTATGTC 58.266 36.000 6.21 0.00 35.01 3.06
771 864 6.707440 TGTCACATCAAACTTTTGGTATGT 57.293 33.333 1.94 3.19 36.58 2.29
772 865 7.369607 TCATGTCACATCAAACTTTTGGTATG 58.630 34.615 1.94 2.63 38.66 2.39
773 866 7.523293 TCATGTCACATCAAACTTTTGGTAT 57.477 32.000 1.94 0.00 38.66 2.73
853 949 4.530875 CTTTGTCCTGAGGCTCCAATAAT 58.469 43.478 12.86 0.00 0.00 1.28
854 950 3.873801 GCTTTGTCCTGAGGCTCCAATAA 60.874 47.826 12.86 0.00 0.00 1.40
855 951 2.356125 GCTTTGTCCTGAGGCTCCAATA 60.356 50.000 12.86 0.00 0.00 1.90
911 1007 2.593466 TGGGGTAGGTTACTGGGATACT 59.407 50.000 0.00 0.00 0.00 2.12
951 1060 6.881602 AGGAAGCAAAACTAGTAAGAAGATGG 59.118 38.462 0.00 0.00 0.00 3.51
975 1098 8.545229 TCTTTCTTTCTGAGATTTCTGCTTAG 57.455 34.615 0.00 0.00 33.49 2.18
985 1108 8.431222 CCCTATCTTCATCTTTCTTTCTGAGAT 58.569 37.037 0.00 0.00 33.49 2.75
995 1128 5.303259 AGCCTTCCCTATCTTCATCTTTC 57.697 43.478 0.00 0.00 0.00 2.62
1064 1221 1.630126 GGCAAGGATGAGGAGCCTGA 61.630 60.000 0.00 0.00 36.79 3.86
1137 1294 1.809619 GTCGGCTACAATGAGCGCA 60.810 57.895 11.47 0.00 43.83 6.09
1149 1306 2.757917 GCTCTCTCCCAGTCGGCT 60.758 66.667 0.00 0.00 0.00 5.52
1200 1357 1.340211 ACGATGACCGGTCTCTTCTCT 60.340 52.381 33.39 13.09 43.93 3.10
1274 1431 1.276989 AGCAACCATGGCCATTCTTTG 59.723 47.619 17.92 19.18 0.00 2.77
1276 1433 1.551883 GAAGCAACCATGGCCATTCTT 59.448 47.619 17.92 13.74 0.00 2.52
1284 1441 1.304713 AGCTGGGAAGCAACCATGG 60.305 57.895 11.19 11.19 37.38 3.66
1439 1596 3.214696 ACTCCAACCCTTCAACTTCTG 57.785 47.619 0.00 0.00 0.00 3.02
1472 1629 1.134189 CAGCAGCCTGATCAATCTCCA 60.134 52.381 0.00 0.00 41.77 3.86
1525 1682 5.382616 ACAAGACCCTAAAATTCCTCGTTT 58.617 37.500 0.00 0.00 0.00 3.60
1642 1807 4.634004 ACGGATCATCGTTTTTCAAGCATA 59.366 37.500 0.00 0.00 40.85 3.14
1651 1816 3.275143 TGGCAATACGGATCATCGTTTT 58.725 40.909 2.33 0.00 43.59 2.43
1690 1857 7.341256 AGGCAGAATGATTTTAGATGTTGACAT 59.659 33.333 0.00 0.00 39.69 3.06
1708 1875 1.720781 AAAGTTGGGCAAGGCAGAAT 58.279 45.000 0.00 0.00 0.00 2.40
1709 1876 1.412343 GAAAAGTTGGGCAAGGCAGAA 59.588 47.619 0.00 0.00 0.00 3.02
1712 1879 1.406860 GGGAAAAGTTGGGCAAGGCA 61.407 55.000 0.00 0.00 0.00 4.75
1734 1908 1.991167 TGGGTGGACGGGATGGTAC 60.991 63.158 0.00 0.00 0.00 3.34
1765 1939 9.212641 AGTACTGCATATATACAATCAGCTTTG 57.787 33.333 0.00 0.00 0.00 2.77
1774 1948 8.895141 ATGGTAGGAGTACTGCATATATACAA 57.105 34.615 17.34 3.89 32.86 2.41
1797 1971 2.009774 GGACAATGGAAGTCACCGATG 58.990 52.381 0.00 0.00 37.74 3.84
1799 1973 0.323629 GGGACAATGGAAGTCACCGA 59.676 55.000 0.00 0.00 37.74 4.69
1803 1977 1.780309 ACAAGGGGACAATGGAAGTCA 59.220 47.619 0.00 0.00 37.74 3.41
1866 2042 4.571919 AGCCATTTGATGTCAATTGTTGG 58.428 39.130 5.13 11.03 36.19 3.77
1868 2044 6.105397 AGAAGCCATTTGATGTCAATTGTT 57.895 33.333 5.13 5.55 36.19 2.83
1884 2060 8.580720 GTTCATTAGATCACTAGATAGAAGCCA 58.419 37.037 0.00 0.00 33.72 4.75
1894 2070 5.563867 GCCTCGGAGTTCATTAGATCACTAG 60.564 48.000 4.02 0.00 0.00 2.57
1898 2074 3.031013 TGCCTCGGAGTTCATTAGATCA 58.969 45.455 4.02 0.00 0.00 2.92
1902 2078 2.678336 GGTTTGCCTCGGAGTTCATTAG 59.322 50.000 4.02 0.00 0.00 1.73
1903 2079 2.304761 AGGTTTGCCTCGGAGTTCATTA 59.695 45.455 4.02 0.00 42.67 1.90
1904 2080 1.073923 AGGTTTGCCTCGGAGTTCATT 59.926 47.619 4.02 0.00 42.67 2.57
1905 2081 0.693049 AGGTTTGCCTCGGAGTTCAT 59.307 50.000 4.02 0.00 42.67 2.57
1914 2090 0.887387 TTGCGGTGTAGGTTTGCCTC 60.887 55.000 0.00 0.00 45.64 4.70
1918 2094 2.735134 GACTACTTGCGGTGTAGGTTTG 59.265 50.000 12.85 0.00 41.03 2.93
1928 2104 0.866061 CGACGATGGACTACTTGCGG 60.866 60.000 0.00 0.00 0.00 5.69
1929 2105 0.098200 TCGACGATGGACTACTTGCG 59.902 55.000 0.00 0.00 0.00 4.85
1931 2107 4.294416 AGAATCGACGATGGACTACTTG 57.706 45.455 11.83 0.00 0.00 3.16
1949 2125 2.206750 GGTGTGTTGTAGCGTCAAGAA 58.793 47.619 0.00 0.00 0.00 2.52
1952 2128 0.466543 AGGGTGTGTTGTAGCGTCAA 59.533 50.000 0.00 0.00 0.00 3.18
1953 2129 0.249699 CAGGGTGTGTTGTAGCGTCA 60.250 55.000 0.00 0.00 0.00 4.35
1982 2160 1.447317 GAGGGCAAGGTGTGTGTGTG 61.447 60.000 0.00 0.00 0.00 3.82
1983 2161 1.152963 GAGGGCAAGGTGTGTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
1984 2162 0.538057 ATGAGGGCAAGGTGTGTGTG 60.538 55.000 0.00 0.00 0.00 3.82
1985 2163 0.250901 GATGAGGGCAAGGTGTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
2016 2194 3.695830 AGGTTCGTCCAGAATTAAGCA 57.304 42.857 0.00 0.00 41.49 3.91
2020 2198 3.773119 AGCCTAAGGTTCGTCCAGAATTA 59.227 43.478 2.77 0.00 41.49 1.40
2022 2200 2.168728 GAGCCTAAGGTTCGTCCAGAAT 59.831 50.000 2.77 0.00 41.49 2.40
2024 2202 1.183549 GAGCCTAAGGTTCGTCCAGA 58.816 55.000 2.77 0.00 39.02 3.86
2025 2203 0.895530 TGAGCCTAAGGTTCGTCCAG 59.104 55.000 0.00 0.00 35.65 3.86
2055 2233 5.698741 TTTCCTAGATGAGCTTCATGGAA 57.301 39.130 3.76 5.92 37.20 3.53
2072 2250 1.004044 CCAGAGGTCAGTGCATTTCCT 59.996 52.381 0.00 0.00 0.00 3.36
2076 2254 1.001641 GCCCAGAGGTCAGTGCATT 60.002 57.895 0.00 0.00 34.57 3.56
2082 2260 1.139853 GTATCAAGGCCCAGAGGTCAG 59.860 57.143 0.00 0.00 41.85 3.51
2084 2262 0.470341 GGTATCAAGGCCCAGAGGTC 59.530 60.000 0.00 0.00 38.43 3.85
2090 2268 1.922447 AGATGTTGGTATCAAGGCCCA 59.078 47.619 0.00 0.00 32.92 5.36
2091 2269 2.301346 CAGATGTTGGTATCAAGGCCC 58.699 52.381 0.00 0.00 32.92 5.80
2105 2283 0.251787 GGAAACCAAGGGCCAGATGT 60.252 55.000 6.18 0.00 0.00 3.06
2125 2303 8.817100 GTTCCAAATTTTCCAAAGAACTACAAG 58.183 33.333 0.00 0.00 31.66 3.16
2145 2323 3.864789 AGAGCTTTTCTCCAGTTCCAA 57.135 42.857 0.00 0.00 42.90 3.53
2149 2327 2.909662 AGGCTAGAGCTTTTCTCCAGTT 59.090 45.455 0.81 0.00 42.90 3.16
2153 2331 2.237392 TGGAAGGCTAGAGCTTTTCTCC 59.763 50.000 6.27 1.83 40.57 3.71
2154 2332 3.618690 TGGAAGGCTAGAGCTTTTCTC 57.381 47.619 6.27 4.50 40.57 2.87
2160 2338 2.633967 CTCATCATGGAAGGCTAGAGCT 59.366 50.000 0.81 0.00 41.70 4.09
2231 2412 5.556915 TGTCCTTCAACGTAAAGATCCATT 58.443 37.500 11.17 0.00 0.00 3.16
2239 2420 4.951254 TGTGAGATGTCCTTCAACGTAAA 58.049 39.130 0.00 0.00 0.00 2.01
2243 2424 3.187227 CCTTTGTGAGATGTCCTTCAACG 59.813 47.826 0.00 0.00 0.00 4.10
2247 2428 4.691216 GTGTACCTTTGTGAGATGTCCTTC 59.309 45.833 0.00 0.00 0.00 3.46
2250 2431 3.997021 CAGTGTACCTTTGTGAGATGTCC 59.003 47.826 0.00 0.00 0.00 4.02
2273 2454 3.722147 AGTTATCGCTGCCATGACTTAG 58.278 45.455 0.00 0.00 0.00 2.18
2288 2469 1.473278 CGAGGCGGGAGGATAGTTATC 59.527 57.143 0.00 0.00 0.00 1.75
2292 2473 0.896019 CATCGAGGCGGGAGGATAGT 60.896 60.000 0.00 0.00 0.00 2.12
2293 2474 1.886585 CATCGAGGCGGGAGGATAG 59.113 63.158 0.00 0.00 0.00 2.08
2294 2475 2.276116 GCATCGAGGCGGGAGGATA 61.276 63.158 6.20 0.00 0.00 2.59
2295 2476 3.620785 GCATCGAGGCGGGAGGAT 61.621 66.667 6.20 0.00 0.00 3.24
2296 2477 4.841617 AGCATCGAGGCGGGAGGA 62.842 66.667 17.28 0.00 39.27 3.71
2297 2478 4.292178 GAGCATCGAGGCGGGAGG 62.292 72.222 17.28 0.00 39.27 4.30
2298 2479 1.456196 TAAGAGCATCGAGGCGGGAG 61.456 60.000 17.28 0.00 42.67 4.30
2299 2480 0.827925 ATAAGAGCATCGAGGCGGGA 60.828 55.000 17.28 3.91 42.67 5.14
2300 2481 0.668706 CATAAGAGCATCGAGGCGGG 60.669 60.000 17.28 0.00 42.67 6.13
2301 2482 0.315251 TCATAAGAGCATCGAGGCGG 59.685 55.000 17.28 3.69 42.67 6.13
2302 2483 2.140065 TTCATAAGAGCATCGAGGCG 57.860 50.000 17.28 0.82 42.67 5.52
2303 2484 5.064452 CCATATTTCATAAGAGCATCGAGGC 59.936 44.000 15.45 15.45 42.67 4.70
2304 2485 6.169094 ACCATATTTCATAAGAGCATCGAGG 58.831 40.000 0.00 0.00 42.67 4.63
2305 2486 8.031864 AGTACCATATTTCATAAGAGCATCGAG 58.968 37.037 0.00 0.00 42.67 4.04
2306 2487 7.896811 AGTACCATATTTCATAAGAGCATCGA 58.103 34.615 0.00 0.00 42.67 3.59
2307 2488 8.438513 CAAGTACCATATTTCATAAGAGCATCG 58.561 37.037 0.00 0.00 42.67 3.84
2308 2489 9.277783 ACAAGTACCATATTTCATAAGAGCATC 57.722 33.333 0.00 0.00 0.00 3.91
2309 2490 9.060347 CACAAGTACCATATTTCATAAGAGCAT 57.940 33.333 0.00 0.00 0.00 3.79
2310 2491 8.264347 TCACAAGTACCATATTTCATAAGAGCA 58.736 33.333 0.00 0.00 0.00 4.26
2311 2492 8.662781 TCACAAGTACCATATTTCATAAGAGC 57.337 34.615 0.00 0.00 0.00 4.09
2318 2499 9.173021 CCTAAACATCACAAGTACCATATTTCA 57.827 33.333 0.00 0.00 0.00 2.69
2319 2500 9.174166 ACCTAAACATCACAAGTACCATATTTC 57.826 33.333 0.00 0.00 0.00 2.17
2331 2512 8.871629 AATATGTTACCACCTAAACATCACAA 57.128 30.769 4.11 0.00 43.44 3.33
2342 2523 4.349365 CCCACCAAAATATGTTACCACCT 58.651 43.478 0.00 0.00 0.00 4.00
2343 2524 3.449377 CCCCACCAAAATATGTTACCACC 59.551 47.826 0.00 0.00 0.00 4.61
2347 2528 4.709886 AGCTTCCCCACCAAAATATGTTAC 59.290 41.667 0.00 0.00 0.00 2.50
2348 2529 4.941713 AGCTTCCCCACCAAAATATGTTA 58.058 39.130 0.00 0.00 0.00 2.41
2349 2530 3.769300 GAGCTTCCCCACCAAAATATGTT 59.231 43.478 0.00 0.00 0.00 2.71
2350 2531 3.365472 GAGCTTCCCCACCAAAATATGT 58.635 45.455 0.00 0.00 0.00 2.29
2351 2532 2.695147 GGAGCTTCCCCACCAAAATATG 59.305 50.000 0.00 0.00 0.00 1.78
2352 2533 3.032265 GGAGCTTCCCCACCAAAATAT 57.968 47.619 0.00 0.00 0.00 1.28
2353 2534 2.525105 GGAGCTTCCCCACCAAAATA 57.475 50.000 0.00 0.00 0.00 1.40
2354 2535 3.381388 GGAGCTTCCCCACCAAAAT 57.619 52.632 0.00 0.00 0.00 1.82
2355 2536 4.943373 GGAGCTTCCCCACCAAAA 57.057 55.556 0.00 0.00 0.00 2.44
2377 2558 0.464735 TTGAACAGTCAACACGGGGG 60.465 55.000 0.00 0.00 38.88 5.40
2378 2559 1.333619 CTTTGAACAGTCAACACGGGG 59.666 52.381 0.00 0.00 43.52 5.73
2379 2560 2.285083 TCTTTGAACAGTCAACACGGG 58.715 47.619 0.00 0.00 43.52 5.28
2380 2561 3.126171 TGTTCTTTGAACAGTCAACACGG 59.874 43.478 8.81 0.00 43.52 4.94
2381 2562 4.335082 TGTTCTTTGAACAGTCAACACG 57.665 40.909 8.81 0.00 43.52 4.49
2382 2563 5.457140 TGTTGTTCTTTGAACAGTCAACAC 58.543 37.500 12.04 8.01 43.52 3.32
2383 2564 5.697473 TGTTGTTCTTTGAACAGTCAACA 57.303 34.783 12.04 10.91 43.52 3.33
2384 2565 7.328249 TCAATTGTTGTTCTTTGAACAGTCAAC 59.672 33.333 21.83 15.03 43.52 3.18
2385 2566 7.374272 TCAATTGTTGTTCTTTGAACAGTCAA 58.626 30.769 21.73 21.73 42.12 3.18
2386 2567 6.918626 TCAATTGTTGTTCTTTGAACAGTCA 58.081 32.000 12.04 12.28 33.73 3.41
2387 2568 7.992180 ATCAATTGTTGTTCTTTGAACAGTC 57.008 32.000 12.04 10.38 33.73 3.51
2388 2569 8.034215 TGAATCAATTGTTGTTCTTTGAACAGT 58.966 29.630 12.04 0.00 33.73 3.55
2389 2570 8.410030 TGAATCAATTGTTGTTCTTTGAACAG 57.590 30.769 12.04 2.16 33.73 3.16
2390 2571 8.768957 TTGAATCAATTGTTGTTCTTTGAACA 57.231 26.923 5.13 8.81 32.35 3.18
2394 2575 9.991388 ACAATTTGAATCAATTGTTGTTCTTTG 57.009 25.926 5.13 13.76 33.96 2.77
2423 2893 3.146066 GTGAAGGTTTGCTATGTGGACA 58.854 45.455 0.00 0.00 0.00 4.02
2424 2894 3.146066 TGTGAAGGTTTGCTATGTGGAC 58.854 45.455 0.00 0.00 0.00 4.02
2434 2913 5.520376 AGGTCTTTCAATGTGAAGGTTTG 57.480 39.130 0.77 0.00 37.70 2.93
2438 2917 3.691609 GGCTAGGTCTTTCAATGTGAAGG 59.308 47.826 0.00 0.00 37.70 3.46
2481 2960 7.125811 AGGGAGTACTAACTATTCAATGCTGAA 59.874 37.037 0.00 0.00 40.04 3.02
2484 2963 6.042208 GGAGGGAGTACTAACTATTCAATGCT 59.958 42.308 0.00 0.00 35.56 3.79
2516 2995 2.553086 TGATTATCCGGGCGTTACAAC 58.447 47.619 0.00 0.00 0.00 3.32
2517 2996 2.983907 TGATTATCCGGGCGTTACAA 57.016 45.000 0.00 0.00 0.00 2.41
2518 2997 2.828877 CTTGATTATCCGGGCGTTACA 58.171 47.619 0.00 0.00 0.00 2.41
2519 2998 1.529865 GCTTGATTATCCGGGCGTTAC 59.470 52.381 0.00 0.00 0.00 2.50
2520 2999 1.414919 AGCTTGATTATCCGGGCGTTA 59.585 47.619 0.00 0.00 0.00 3.18
2521 3000 0.180406 AGCTTGATTATCCGGGCGTT 59.820 50.000 0.00 0.00 0.00 4.84
2522 3001 1.045407 TAGCTTGATTATCCGGGCGT 58.955 50.000 0.00 0.00 0.00 5.68
2523 3002 1.270094 TGTAGCTTGATTATCCGGGCG 60.270 52.381 0.00 0.00 0.00 6.13
2524 3003 2.224305 ACTGTAGCTTGATTATCCGGGC 60.224 50.000 0.00 0.00 0.00 6.13
2525 3004 3.753294 ACTGTAGCTTGATTATCCGGG 57.247 47.619 0.00 0.00 0.00 5.73
2526 3005 5.869888 GGATTACTGTAGCTTGATTATCCGG 59.130 44.000 0.00 0.00 0.00 5.14
2527 3006 5.869888 GGGATTACTGTAGCTTGATTATCCG 59.130 44.000 0.00 0.00 31.87 4.18
2528 3007 6.651225 GTGGGATTACTGTAGCTTGATTATCC 59.349 42.308 0.00 0.00 0.00 2.59
2529 3008 6.366332 CGTGGGATTACTGTAGCTTGATTATC 59.634 42.308 0.00 0.00 0.00 1.75
2530 3009 6.223852 CGTGGGATTACTGTAGCTTGATTAT 58.776 40.000 0.00 0.00 0.00 1.28
2531 3010 5.597806 CGTGGGATTACTGTAGCTTGATTA 58.402 41.667 0.00 0.00 0.00 1.75
2532 3011 4.442706 CGTGGGATTACTGTAGCTTGATT 58.557 43.478 0.00 0.00 0.00 2.57
2533 3012 3.741388 GCGTGGGATTACTGTAGCTTGAT 60.741 47.826 0.00 0.00 0.00 2.57
2534 3013 2.418197 GCGTGGGATTACTGTAGCTTGA 60.418 50.000 0.00 0.00 0.00 3.02
2535 3014 1.933853 GCGTGGGATTACTGTAGCTTG 59.066 52.381 0.00 0.00 0.00 4.01
2536 3015 1.831736 AGCGTGGGATTACTGTAGCTT 59.168 47.619 0.00 0.00 0.00 3.74
2537 3016 1.486211 AGCGTGGGATTACTGTAGCT 58.514 50.000 0.00 0.00 0.00 3.32
2538 3017 3.447918 TTAGCGTGGGATTACTGTAGC 57.552 47.619 0.00 0.00 0.00 3.58
2539 3018 4.202223 ACCATTAGCGTGGGATTACTGTAG 60.202 45.833 10.01 0.00 43.77 2.74
2540 3019 3.707611 ACCATTAGCGTGGGATTACTGTA 59.292 43.478 10.01 0.00 43.77 2.74
2541 3020 2.504175 ACCATTAGCGTGGGATTACTGT 59.496 45.455 10.01 0.00 43.77 3.55
2542 3021 2.872245 CACCATTAGCGTGGGATTACTG 59.128 50.000 10.01 0.00 43.77 2.74
2543 3022 2.504175 ACACCATTAGCGTGGGATTACT 59.496 45.455 10.01 0.00 43.77 2.24
2544 3023 2.870411 GACACCATTAGCGTGGGATTAC 59.130 50.000 10.01 0.00 43.77 1.89
2545 3024 2.502130 TGACACCATTAGCGTGGGATTA 59.498 45.455 10.01 0.00 43.77 1.75
2546 3025 1.280710 TGACACCATTAGCGTGGGATT 59.719 47.619 10.01 0.00 43.77 3.01
2547 3026 0.908910 TGACACCATTAGCGTGGGAT 59.091 50.000 10.01 0.00 43.77 3.85
2548 3027 0.036765 GTGACACCATTAGCGTGGGA 60.037 55.000 10.01 0.00 43.77 4.37
2549 3028 1.358725 CGTGACACCATTAGCGTGGG 61.359 60.000 10.01 0.00 43.77 4.61
2550 3029 0.669318 ACGTGACACCATTAGCGTGG 60.669 55.000 0.00 4.55 45.04 4.94
2551 3030 0.713883 GACGTGACACCATTAGCGTG 59.286 55.000 0.00 0.00 37.26 5.34
2552 3031 0.315886 TGACGTGACACCATTAGCGT 59.684 50.000 0.00 0.00 35.20 5.07
2553 3032 0.713883 GTGACGTGACACCATTAGCG 59.286 55.000 0.00 0.00 35.07 4.26
2561 3040 1.856597 GTAACTGTGGTGACGTGACAC 59.143 52.381 7.63 7.17 39.70 3.67
2562 3041 1.752498 AGTAACTGTGGTGACGTGACA 59.248 47.619 7.63 0.00 32.16 3.58
2563 3042 2.124903 CAGTAACTGTGGTGACGTGAC 58.875 52.381 0.00 0.00 32.16 3.67
2564 3043 1.752498 ACAGTAACTGTGGTGACGTGA 59.248 47.619 0.00 0.00 43.63 4.35
2565 3044 2.218953 ACAGTAACTGTGGTGACGTG 57.781 50.000 0.00 0.00 43.63 4.49
2566 3045 2.546778 CAACAGTAACTGTGGTGACGT 58.453 47.619 0.00 0.00 44.62 4.34
2567 3046 1.260561 GCAACAGTAACTGTGGTGACG 59.739 52.381 0.65 0.00 44.62 4.35
2568 3047 2.561569 AGCAACAGTAACTGTGGTGAC 58.438 47.619 0.65 0.00 44.62 3.67
2569 3048 4.409718 TTAGCAACAGTAACTGTGGTGA 57.590 40.909 0.65 0.00 44.62 4.02
2570 3049 4.997395 AGATTAGCAACAGTAACTGTGGTG 59.003 41.667 0.00 0.00 44.62 4.17
2571 3050 5.228945 AGATTAGCAACAGTAACTGTGGT 57.771 39.130 0.00 0.00 44.62 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.