Multiple sequence alignment - TraesCS5D01G300600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G300600 chr5D 100.000 4775 0 0 1 4775 397940074 397935300 0.000000e+00 8818.0
1 TraesCS5D01G300600 chr5B 92.117 3831 243 35 665 4466 477982793 477978993 0.000000e+00 5347.0
2 TraesCS5D01G300600 chr5A 88.176 2867 249 46 1946 4765 503058244 503055421 0.000000e+00 3334.0
3 TraesCS5D01G300600 chr5A 89.818 1316 110 19 662 1961 503059636 503058329 0.000000e+00 1666.0
4 TraesCS5D01G300600 chr5A 91.071 168 14 1 7 173 503060326 503060159 4.810000e-55 226.0
5 TraesCS5D01G300600 chr6D 70.443 768 177 41 2350 3096 75873031 75872293 1.090000e-21 115.0
6 TraesCS5D01G300600 chr6A 70.405 740 171 39 2350 3069 91885955 91885244 5.050000e-20 110.0
7 TraesCS5D01G300600 chr6B 70.350 742 168 43 2350 3069 149471541 149470830 2.350000e-18 104.0
8 TraesCS5D01G300600 chr3D 78.378 111 16 6 2808 2914 596666862 596666756 1.110000e-06 65.8
9 TraesCS5D01G300600 chr3D 75.510 147 28 6 2961 3103 597480984 597481126 1.110000e-06 65.8
10 TraesCS5D01G300600 chr3B 78.378 111 16 6 2808 2914 802601262 802601368 1.110000e-06 65.8
11 TraesCS5D01G300600 chr3B 90.909 44 4 0 2961 3004 804171367 804171410 5.160000e-05 60.2
12 TraesCS5D01G300600 chr1D 82.353 68 9 3 2363 2428 483693283 483693217 6.680000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G300600 chr5D 397935300 397940074 4774 True 8818 8818 100.000000 1 4775 1 chr5D.!!$R1 4774
1 TraesCS5D01G300600 chr5B 477978993 477982793 3800 True 5347 5347 92.117000 665 4466 1 chr5B.!!$R1 3801
2 TraesCS5D01G300600 chr5A 503055421 503060326 4905 True 1742 3334 89.688333 7 4765 3 chr5A.!!$R1 4758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 923 0.604243 GCCAACGTGACACATGGGTA 60.604 55.0 22.32 0.0 33.45 3.69 F
1734 1832 0.098376 GCTTGCTCAGAATGCTTCGG 59.902 55.0 0.00 0.0 34.76 4.30 F
2727 2931 0.343372 AGGAGCATTGGGAGAGGGTA 59.657 55.0 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2706 2910 0.182299 CCCTCTCCCAATGCTCCTTC 59.818 60.0 0.0 0.0 0.0 3.46 R
3686 3902 0.389391 TAGAGCTACATTGCCCTCGC 59.611 55.0 0.0 0.0 0.0 5.03 R
4126 4356 0.034767 CTCTGGAGCTTGGGCATTGA 60.035 55.0 0.0 0.0 41.7 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.677633 GACCAACCACCCATTCCCG 60.678 63.158 0.00 0.00 0.00 5.14
30 31 2.362375 CCAACCACCCATTCCCGG 60.362 66.667 0.00 0.00 0.00 5.73
31 32 2.760477 CAACCACCCATTCCCGGA 59.240 61.111 0.73 0.00 0.00 5.14
75 76 0.963856 TGCAGCCAGCTGAAAGGATG 60.964 55.000 23.40 8.67 46.30 3.51
76 77 1.664321 GCAGCCAGCTGAAAGGATGG 61.664 60.000 23.40 0.00 46.30 3.51
81 82 1.475682 CCAGCTGAAAGGATGGAAAGC 59.524 52.381 17.39 0.00 44.65 3.51
84 85 3.949754 CAGCTGAAAGGATGGAAAGCATA 59.050 43.478 8.42 0.00 33.08 3.14
92 93 3.137533 GGATGGAAAGCATAGCACTCTC 58.862 50.000 0.00 0.00 0.00 3.20
119 121 9.239551 GAAACCAGGTACCAACTTAATTAAGAT 57.760 33.333 27.92 16.05 37.08 2.40
147 149 3.254411 TCTCCTGTATATCGCTGCTCAAG 59.746 47.826 0.00 0.00 0.00 3.02
149 151 3.004839 TCCTGTATATCGCTGCTCAAGAC 59.995 47.826 0.00 0.00 0.00 3.01
151 153 2.287608 TGTATATCGCTGCTCAAGACGG 60.288 50.000 0.00 0.00 0.00 4.79
166 168 1.208293 AGACGGATCCTCCTTTGCTTC 59.792 52.381 10.75 0.00 33.30 3.86
173 175 4.223700 GGATCCTCCTTTGCTTCCAAAATT 59.776 41.667 3.84 0.00 40.21 1.82
174 176 5.422012 GGATCCTCCTTTGCTTCCAAAATTA 59.578 40.000 3.84 0.00 40.21 1.40
175 177 6.098838 GGATCCTCCTTTGCTTCCAAAATTAT 59.901 38.462 3.84 0.00 40.21 1.28
179 181 7.235399 TCCTCCTTTGCTTCCAAAATTATTTCT 59.765 33.333 0.00 0.00 40.21 2.52
180 182 8.531146 CCTCCTTTGCTTCCAAAATTATTTCTA 58.469 33.333 0.00 0.00 40.21 2.10
181 183 9.927668 CTCCTTTGCTTCCAAAATTATTTCTAA 57.072 29.630 0.00 0.00 40.21 2.10
202 204 8.239038 TCTAATGTAACATCCACTCTAAGAGG 57.761 38.462 0.00 0.00 33.35 3.69
203 205 6.875972 AATGTAACATCCACTCTAAGAGGT 57.124 37.500 0.00 0.00 33.35 3.85
204 206 5.661056 TGTAACATCCACTCTAAGAGGTG 57.339 43.478 0.00 0.00 33.35 4.00
205 207 5.084519 TGTAACATCCACTCTAAGAGGTGT 58.915 41.667 0.00 2.64 33.35 4.16
206 208 5.542635 TGTAACATCCACTCTAAGAGGTGTT 59.457 40.000 11.42 11.42 35.85 3.32
207 209 5.568620 AACATCCACTCTAAGAGGTGTTT 57.431 39.130 7.63 0.00 31.75 2.83
208 210 6.681729 AACATCCACTCTAAGAGGTGTTTA 57.318 37.500 7.63 0.00 31.75 2.01
209 211 6.681729 ACATCCACTCTAAGAGGTGTTTAA 57.318 37.500 0.00 0.00 33.35 1.52
210 212 7.074653 ACATCCACTCTAAGAGGTGTTTAAA 57.925 36.000 0.00 0.00 33.35 1.52
211 213 7.514721 ACATCCACTCTAAGAGGTGTTTAAAA 58.485 34.615 0.00 0.00 33.35 1.52
212 214 7.661847 ACATCCACTCTAAGAGGTGTTTAAAAG 59.338 37.037 0.00 0.00 33.35 2.27
213 215 7.369551 TCCACTCTAAGAGGTGTTTAAAAGA 57.630 36.000 0.00 0.00 33.35 2.52
214 216 7.798071 TCCACTCTAAGAGGTGTTTAAAAGAA 58.202 34.615 0.00 0.00 33.35 2.52
215 217 7.713942 TCCACTCTAAGAGGTGTTTAAAAGAAC 59.286 37.037 0.00 0.00 33.35 3.01
216 218 7.497909 CCACTCTAAGAGGTGTTTAAAAGAACA 59.502 37.037 0.00 0.00 34.14 3.18
217 219 9.057089 CACTCTAAGAGGTGTTTAAAAGAACAT 57.943 33.333 0.00 0.00 36.26 2.71
218 220 9.274206 ACTCTAAGAGGTGTTTAAAAGAACATC 57.726 33.333 0.00 0.00 40.20 3.06
219 221 8.617290 TCTAAGAGGTGTTTAAAAGAACATCC 57.383 34.615 7.55 0.88 40.67 3.51
220 222 8.215050 TCTAAGAGGTGTTTAAAAGAACATCCA 58.785 33.333 7.55 0.00 40.67 3.41
221 223 6.635030 AGAGGTGTTTAAAAGAACATCCAC 57.365 37.500 7.55 1.89 40.67 4.02
222 224 5.535030 AGAGGTGTTTAAAAGAACATCCACC 59.465 40.000 10.74 10.74 40.67 4.61
223 225 5.454966 AGGTGTTTAAAAGAACATCCACCT 58.545 37.500 14.04 14.04 40.67 4.00
244 246 5.103643 ACCTTCTTAGAAGGGTTGGAACTTT 60.104 40.000 35.51 14.79 41.71 2.66
249 251 7.674120 TCTTAGAAGGGTTGGAACTTTACTAC 58.326 38.462 0.00 0.00 0.00 2.73
252 254 4.904895 AGGGTTGGAACTTTACTACCTC 57.095 45.455 5.01 0.00 0.00 3.85
264 266 7.344095 ACTTTACTACCTCGCACATACTATT 57.656 36.000 0.00 0.00 0.00 1.73
269 271 6.817184 ACTACCTCGCACATACTATTTGAAT 58.183 36.000 0.00 0.00 0.00 2.57
295 297 7.175990 TGTTAAAGACACAGTTTGGAAGAAACT 59.824 33.333 0.00 0.00 35.70 2.66
309 311 4.448060 GGAAGAAACTACCAGAACACTTCG 59.552 45.833 0.00 0.00 35.04 3.79
316 318 1.139058 ACCAGAACACTTCGTGAAGCT 59.861 47.619 9.46 0.00 41.99 3.74
324 326 6.912591 AGAACACTTCGTGAAGCTAAATTTTG 59.087 34.615 9.46 0.00 41.99 2.44
329 331 5.369685 TCGTGAAGCTAAATTTTGATGCA 57.630 34.783 3.69 0.00 0.00 3.96
331 333 4.030977 CGTGAAGCTAAATTTTGATGCAGC 59.969 41.667 0.00 0.00 0.00 5.25
332 334 5.166398 GTGAAGCTAAATTTTGATGCAGCT 58.834 37.500 2.53 2.18 40.94 4.24
334 336 6.808212 GTGAAGCTAAATTTTGATGCAGCTTA 59.192 34.615 18.81 8.77 46.35 3.09
335 337 6.808212 TGAAGCTAAATTTTGATGCAGCTTAC 59.192 34.615 18.81 14.06 46.35 2.34
336 338 5.654497 AGCTAAATTTTGATGCAGCTTACC 58.346 37.500 2.53 0.00 35.94 2.85
337 339 5.185635 AGCTAAATTTTGATGCAGCTTACCA 59.814 36.000 2.53 0.00 35.94 3.25
338 340 6.044682 GCTAAATTTTGATGCAGCTTACCAT 58.955 36.000 2.53 0.00 0.00 3.55
339 341 6.019318 GCTAAATTTTGATGCAGCTTACCATG 60.019 38.462 2.53 0.00 0.00 3.66
340 342 5.664294 AATTTTGATGCAGCTTACCATGA 57.336 34.783 2.53 0.00 0.00 3.07
367 369 4.065088 CAAAACACAGGTGCTCTAGCTAA 58.935 43.478 3.26 0.00 42.66 3.09
392 394 2.197577 GGTCTTAAGAGATCACGCAGC 58.802 52.381 5.12 0.00 33.01 5.25
409 411 1.400846 CAGCTCAGTTTATGGCTGCTG 59.599 52.381 0.00 0.00 42.40 4.41
421 423 2.437180 CTGCTGATGGCCGAAGCA 60.437 61.111 21.43 21.43 44.36 3.91
458 500 3.055963 AGGACTCTCTCTTGCAGTTCATG 60.056 47.826 0.00 0.00 0.00 3.07
465 507 1.699083 TCTTGCAGTTCATGTGGGAGA 59.301 47.619 0.00 0.00 0.00 3.71
496 539 3.701542 TGAAGGCGAGTCAGATTCTACAT 59.298 43.478 0.00 0.00 0.00 2.29
519 562 8.143835 ACATAAGTAATTGAAGCTTGCAAAAGT 58.856 29.630 2.10 2.04 0.00 2.66
543 586 4.856509 ACTGTCTACATGGACTGCTAGTA 58.143 43.478 0.00 0.00 38.26 1.82
548 591 5.069251 GTCTACATGGACTGCTAGTATGGTT 59.931 44.000 0.00 0.00 33.81 3.67
567 610 6.335781 TGGTTAATGTAATAGGGAAGGCTT 57.664 37.500 0.00 0.00 0.00 4.35
568 611 6.362248 TGGTTAATGTAATAGGGAAGGCTTC 58.638 40.000 18.98 18.98 0.00 3.86
581 625 6.731467 AGGGAAGGCTTCTTTTATCATTGTA 58.269 36.000 25.25 0.00 0.00 2.41
619 664 5.046735 TGAGATAGCTCATAGATTTCCAGGC 60.047 44.000 6.59 0.00 45.88 4.85
631 676 3.749665 TTTCCAGGCATTGTTTTGAGG 57.250 42.857 0.00 0.00 0.00 3.86
633 678 3.173953 TCCAGGCATTGTTTTGAGGAT 57.826 42.857 0.00 0.00 0.00 3.24
642 687 6.127366 GGCATTGTTTTGAGGATAGGATTGAA 60.127 38.462 0.00 0.00 0.00 2.69
652 697 7.233632 TGAGGATAGGATTGAATGTAATTGGG 58.766 38.462 0.00 0.00 36.07 4.12
657 702 6.530019 AGGATTGAATGTAATTGGGTCAAC 57.470 37.500 0.00 0.00 36.07 3.18
658 703 6.256053 AGGATTGAATGTAATTGGGTCAACT 58.744 36.000 0.00 0.00 36.07 3.16
659 704 6.725834 AGGATTGAATGTAATTGGGTCAACTT 59.274 34.615 0.00 0.00 36.07 2.66
660 705 7.035612 GGATTGAATGTAATTGGGTCAACTTC 58.964 38.462 0.00 0.00 36.07 3.01
662 707 5.640147 TGAATGTAATTGGGTCAACTTCCT 58.360 37.500 0.00 0.00 36.07 3.36
663 708 6.074648 TGAATGTAATTGGGTCAACTTCCTT 58.925 36.000 0.00 0.00 36.07 3.36
664 709 6.553100 TGAATGTAATTGGGTCAACTTCCTTT 59.447 34.615 0.00 0.00 36.07 3.11
667 712 5.659079 TGTAATTGGGTCAACTTCCTTTTGT 59.341 36.000 0.00 0.00 0.00 2.83
669 714 6.800072 AATTGGGTCAACTTCCTTTTGTTA 57.200 33.333 0.00 0.00 0.00 2.41
674 757 7.269316 TGGGTCAACTTCCTTTTGTTAATTTC 58.731 34.615 0.00 0.00 0.00 2.17
677 760 7.378728 GGTCAACTTCCTTTTGTTAATTTCTCG 59.621 37.037 0.00 0.00 0.00 4.04
701 784 3.567478 AAGGTAGTCATGATGGCCTTC 57.433 47.619 16.80 11.69 31.42 3.46
702 785 2.481441 AGGTAGTCATGATGGCCTTCA 58.519 47.619 22.42 22.42 0.00 3.02
703 786 3.051581 AGGTAGTCATGATGGCCTTCAT 58.948 45.455 24.68 24.68 39.13 2.57
709 794 2.510800 TCATGATGGCCTTCATTCAGGA 59.489 45.455 27.08 19.28 35.71 3.86
749 834 8.492748 CGTATTATTGCACGGTTATAGTGAAAT 58.507 33.333 7.58 7.58 46.43 2.17
793 882 9.276590 CAACTCATCAATAATGGACTGCTTATA 57.723 33.333 0.00 0.00 35.94 0.98
833 922 1.896660 GCCAACGTGACACATGGGT 60.897 57.895 22.32 0.00 33.45 4.51
834 923 0.604243 GCCAACGTGACACATGGGTA 60.604 55.000 22.32 0.00 33.45 3.69
835 924 1.153353 CCAACGTGACACATGGGTAC 58.847 55.000 16.23 0.00 0.00 3.34
892 982 6.000246 TCATCTAACAGAATACAATGGCCA 58.000 37.500 8.56 8.56 0.00 5.36
900 990 5.418840 ACAGAATACAATGGCCAACTAAAGG 59.581 40.000 10.96 0.00 0.00 3.11
901 991 5.652014 CAGAATACAATGGCCAACTAAAGGA 59.348 40.000 10.96 0.00 0.00 3.36
916 1006 5.887754 ACTAAAGGAAAAGCCACCATTCTA 58.112 37.500 0.00 0.00 40.02 2.10
958 1048 9.416794 CAGAAATCCATAGACATACATGTAGTC 57.583 37.037 19.47 19.47 41.95 2.59
984 1076 6.202570 CACAGAAGAGTTTGAGAGAGGAAAAG 59.797 42.308 0.00 0.00 0.00 2.27
1005 1097 2.159393 GCGAAGAGTGCAATTAATGGCA 60.159 45.455 13.72 13.72 37.77 4.92
1047 1139 1.143813 CAGGGGTGATATGCTCCCTT 58.856 55.000 0.00 0.00 46.95 3.95
1167 1259 1.268079 GCTGTTCTTGAGAAGTTGGCC 59.732 52.381 0.00 0.00 34.27 5.36
1244 1336 5.067936 AGTTGACCTACGATACTGAGGATTG 59.932 44.000 0.00 0.00 34.24 2.67
1248 1340 7.455891 TGACCTACGATACTGAGGATTGTATA 58.544 38.462 5.24 0.00 34.24 1.47
1251 1343 8.600668 ACCTACGATACTGAGGATTGTATAGTA 58.399 37.037 5.24 0.00 36.72 1.82
1272 1364 1.370437 CTCCATGCTCCAGGATCGG 59.630 63.158 0.00 0.00 32.53 4.18
1314 1406 6.491714 TGGTTCATTTGGAAGATTTTTCCA 57.508 33.333 4.60 4.60 46.08 3.53
1343 1435 6.377080 TCAAAGATCTCAGAGAGGGCTATAA 58.623 40.000 6.24 0.00 0.00 0.98
1353 1445 7.911651 TCAGAGAGGGCTATAATTTATCCAAG 58.088 38.462 0.00 0.00 0.00 3.61
1376 1468 3.628942 CAGATCAATCAAATCAAGGCCGA 59.371 43.478 0.00 0.00 0.00 5.54
1381 1473 4.576053 TCAATCAAATCAAGGCCGATGTAG 59.424 41.667 10.81 1.73 0.00 2.74
1382 1474 2.288666 TCAAATCAAGGCCGATGTAGC 58.711 47.619 10.81 0.00 0.00 3.58
1412 1504 3.040414 CTCGACGAGAGCGGCTCAA 62.040 63.158 29.88 8.52 45.51 3.02
1414 1506 1.733041 CGACGAGAGCGGCTCAAAA 60.733 57.895 29.88 0.00 45.51 2.44
1440 1532 5.508200 ACGAAGTCATCTCTACATCTTCC 57.492 43.478 0.00 0.00 29.74 3.46
1442 1534 4.555708 CGAAGTCATCTCTACATCTTCCCG 60.556 50.000 0.00 0.00 0.00 5.14
1483 1575 5.335976 CGACTGCATGTGCTCTATAAGGATA 60.336 44.000 6.55 0.00 42.66 2.59
1485 1577 5.152623 TGCATGTGCTCTATAAGGATACC 57.847 43.478 6.55 0.00 42.66 2.73
1491 1583 1.134560 CTCTATAAGGATACCGCCGGC 59.865 57.143 19.07 19.07 37.17 6.13
1530 1622 4.376146 GACAGAAGGATAAGCTCATGGAC 58.624 47.826 0.00 0.00 0.00 4.02
1536 1628 2.812591 GGATAAGCTCATGGACATGCTG 59.187 50.000 7.41 4.51 38.65 4.41
1634 1732 6.801718 AGTATACCATGCTTTACCTACACA 57.198 37.500 0.00 0.00 0.00 3.72
1648 1746 4.274147 ACCTACACAACAACACCATGAAA 58.726 39.130 0.00 0.00 0.00 2.69
1734 1832 0.098376 GCTTGCTCAGAATGCTTCGG 59.902 55.000 0.00 0.00 34.76 4.30
1737 1835 0.901827 TGCTCAGAATGCTTCGGGTA 59.098 50.000 0.00 0.00 34.76 3.69
2005 2207 8.980481 ATTGGTTTATTTCTAGATACCACCAG 57.020 34.615 0.00 0.00 35.55 4.00
2017 2219 5.805728 AGATACCACCAGAAGTACCAAAAG 58.194 41.667 0.00 0.00 0.00 2.27
2027 2229 6.383147 CCAGAAGTACCAAAAGTATAGAGGGA 59.617 42.308 0.00 0.00 32.28 4.20
2298 2501 3.758554 CCATCTGAAGTTCATTTCCCGTT 59.241 43.478 5.91 0.00 0.00 4.44
2316 2519 6.864342 TCCCGTTTGATTTTAGTTCAAAACA 58.136 32.000 0.81 0.00 42.82 2.83
2512 2716 1.324736 GCTGTTCTAATCGGCGTGAAG 59.675 52.381 6.85 2.67 0.00 3.02
2550 2754 4.358494 ACCTCTCGAAGAACAATACTCG 57.642 45.455 0.00 0.00 34.09 4.18
2620 2824 7.331193 GTCCTGAATACTTAAAAGAAGCTTCGA 59.669 37.037 20.43 5.16 0.00 3.71
2629 2833 8.088981 ACTTAAAAGAAGCTTCGACTGAGATAA 58.911 33.333 20.43 11.02 0.00 1.75
2634 2838 6.744112 AGAAGCTTCGACTGAGATAATAAGG 58.256 40.000 20.43 0.00 0.00 2.69
2703 2907 3.764434 TGGCTAGTAAGAAGACACCAGAG 59.236 47.826 0.00 0.00 0.00 3.35
2706 2910 1.546476 AGTAAGAAGACACCAGAGCGG 59.454 52.381 0.00 0.00 42.50 5.52
2715 2919 1.992277 ACCAGAGCGGAAGGAGCAT 60.992 57.895 0.00 0.00 38.63 3.79
2721 2925 1.821332 GCGGAAGGAGCATTGGGAG 60.821 63.158 0.00 0.00 34.19 4.30
2727 2931 0.343372 AGGAGCATTGGGAGAGGGTA 59.657 55.000 0.00 0.00 0.00 3.69
2862 3066 7.962995 TCATCTTGGTATATATCCAGAGGAC 57.037 40.000 7.22 0.00 36.28 3.85
2866 3070 3.594685 TGGTATATATCCAGAGGACCGGA 59.405 47.826 9.46 0.00 32.98 5.14
2868 3072 4.645588 GGTATATATCCAGAGGACCGGAAG 59.354 50.000 9.46 0.00 32.98 3.46
2877 3081 1.757118 GAGGACCGGAAGATCATGACA 59.243 52.381 9.46 0.00 0.00 3.58
2923 3127 2.288640 GCTGAAGATTTTGTGCCTTGCT 60.289 45.455 0.00 0.00 0.00 3.91
2960 3164 0.745845 CGAGAGGATGTTGCAAGGGG 60.746 60.000 0.00 0.00 0.00 4.79
2974 3178 2.223900 GCAAGGGGCTATTTCAATGAGC 60.224 50.000 0.00 0.00 40.25 4.26
2976 3180 3.677156 AGGGGCTATTTCAATGAGCTT 57.323 42.857 0.00 0.00 36.43 3.74
3157 3361 1.264826 GTAAGATCCGTCGGCTCTCTC 59.735 57.143 17.53 10.14 27.07 3.20
3203 3407 2.429610 TCTCGGTACCAGGAGCAATTAC 59.570 50.000 13.54 0.00 0.00 1.89
3238 3442 2.676076 GATCGCTTGCAACATTTGGTT 58.324 42.857 0.00 0.00 41.47 3.67
3239 3443 3.669290 CGATCGCTTGCAACATTTGGTTA 60.669 43.478 0.26 0.00 37.72 2.85
3242 3446 4.233789 TCGCTTGCAACATTTGGTTATTC 58.766 39.130 0.00 0.00 37.72 1.75
3245 3449 4.389687 GCTTGCAACATTTGGTTATTCTGG 59.610 41.667 0.00 0.00 37.72 3.86
3246 3450 5.540911 CTTGCAACATTTGGTTATTCTGGT 58.459 37.500 0.00 0.00 37.72 4.00
3247 3451 4.880759 TGCAACATTTGGTTATTCTGGTG 58.119 39.130 0.00 0.00 37.72 4.17
3248 3452 4.586421 TGCAACATTTGGTTATTCTGGTGA 59.414 37.500 0.00 0.00 37.72 4.02
3249 3453 5.245751 TGCAACATTTGGTTATTCTGGTGAT 59.754 36.000 0.00 0.00 37.72 3.06
3250 3454 6.165577 GCAACATTTGGTTATTCTGGTGATT 58.834 36.000 0.00 0.00 37.72 2.57
3251 3455 6.311200 GCAACATTTGGTTATTCTGGTGATTC 59.689 38.462 0.00 0.00 37.72 2.52
3252 3456 7.605449 CAACATTTGGTTATTCTGGTGATTCT 58.395 34.615 0.00 0.00 37.72 2.40
3253 3457 7.161773 ACATTTGGTTATTCTGGTGATTCTG 57.838 36.000 0.00 0.00 0.00 3.02
3259 3463 5.705441 GGTTATTCTGGTGATTCTGTTGACA 59.295 40.000 0.00 0.00 0.00 3.58
3261 3465 3.407424 TCTGGTGATTCTGTTGACAGG 57.593 47.619 10.97 0.00 43.91 4.00
3266 3470 3.941483 GGTGATTCTGTTGACAGGGTATG 59.059 47.826 10.97 0.00 43.91 2.39
3270 3474 2.256306 TCTGTTGACAGGGTATGCTCA 58.744 47.619 10.97 0.00 43.91 4.26
3283 3487 4.142381 GGGTATGCTCAAGGCTAAAGTTTG 60.142 45.833 0.00 0.00 42.39 2.93
3303 3507 2.960384 TGTTCGAGTCCTAGTGGTTGAA 59.040 45.455 0.00 0.00 34.23 2.69
3304 3508 3.005472 TGTTCGAGTCCTAGTGGTTGAAG 59.995 47.826 0.00 0.00 34.23 3.02
3310 3514 1.616865 TCCTAGTGGTTGAAGGACGTG 59.383 52.381 0.00 0.00 34.46 4.49
3315 3519 2.028385 AGTGGTTGAAGGACGTGGTATC 60.028 50.000 0.00 0.00 0.00 2.24
3354 3558 1.584380 GAGTTTGCCTGCTGCTCCAG 61.584 60.000 0.00 0.00 42.00 3.86
3406 3613 5.798132 TGGATTATGAGGATGATGCAGTAC 58.202 41.667 0.00 0.00 0.00 2.73
3407 3614 5.545335 TGGATTATGAGGATGATGCAGTACT 59.455 40.000 0.00 0.00 0.00 2.73
3408 3615 6.725834 TGGATTATGAGGATGATGCAGTACTA 59.274 38.462 0.00 0.00 0.00 1.82
3409 3616 7.038659 GGATTATGAGGATGATGCAGTACTAC 58.961 42.308 0.00 0.00 0.00 2.73
3437 3644 6.049955 TCCTGAAATTCTGAATCTACGGTT 57.950 37.500 2.92 0.00 0.00 4.44
3457 3664 5.659048 GTTTCTGGAAACGCTGGATATAG 57.341 43.478 9.91 0.00 40.85 1.31
3465 3672 3.309961 ACGCTGGATATAGCAGATGTG 57.690 47.619 0.00 0.00 43.87 3.21
3466 3673 2.630098 ACGCTGGATATAGCAGATGTGT 59.370 45.455 0.00 0.00 43.87 3.72
3652 3868 3.492309 CGGGACCAATCTCAGAGATCTTG 60.492 52.174 13.63 9.75 32.89 3.02
3658 3874 5.721000 ACCAATCTCAGAGATCTTGAACTCT 59.279 40.000 13.63 4.85 43.13 3.24
3668 3884 8.770438 AGAGATCTTGAACTCTGTTTTGATAC 57.230 34.615 9.18 0.00 41.19 2.24
3669 3885 8.370940 AGAGATCTTGAACTCTGTTTTGATACA 58.629 33.333 9.18 0.00 41.19 2.29
3682 3898 5.468746 TGTTTTGATACAGACACTTGCTACC 59.531 40.000 0.00 0.00 0.00 3.18
3686 3902 0.687354 ACAGACACTTGCTACCCTGG 59.313 55.000 0.00 0.00 0.00 4.45
3691 3907 2.187946 CTTGCTACCCTGGCGAGG 59.812 66.667 7.99 7.99 37.50 4.63
3769 3991 6.430308 ACATCTAGCTATCGTTTCGGAAGATA 59.570 38.462 0.00 0.00 41.60 1.98
3773 3995 6.570672 AGCTATCGTTTCGGAAGATATGTA 57.429 37.500 0.00 0.00 41.60 2.29
3774 3996 6.978338 AGCTATCGTTTCGGAAGATATGTAA 58.022 36.000 0.00 0.00 41.60 2.41
3797 4019 3.181469 GGCGACCAATCTCTACCAATGTA 60.181 47.826 0.00 0.00 0.00 2.29
3799 4021 5.279306 GGCGACCAATCTCTACCAATGTATA 60.279 44.000 0.00 0.00 0.00 1.47
3810 4032 8.363390 TCTCTACCAATGTATAATCAGCTGAAG 58.637 37.037 22.50 8.67 0.00 3.02
3811 4033 6.931281 TCTACCAATGTATAATCAGCTGAAGC 59.069 38.462 22.50 9.64 42.49 3.86
3853 4075 9.126151 CAGGAAATCTAGAGACACTACATCTAA 57.874 37.037 0.00 0.00 0.00 2.10
3996 4226 4.202172 GCCCTTCTCTACCTCAAGATGTAC 60.202 50.000 0.00 0.00 0.00 2.90
4000 4230 6.239176 CCTTCTCTACCTCAAGATGTACATCC 60.239 46.154 28.26 13.32 38.58 3.51
4006 4236 4.281182 ACCTCAAGATGTACATCCCGATAC 59.719 45.833 28.26 6.31 38.58 2.24
4023 4253 3.535860 GATACGCATCGCTGAAACAATC 58.464 45.455 0.00 0.00 0.00 2.67
4033 4263 2.159627 GCTGAAACAATCGTCATCCGTT 59.840 45.455 0.00 0.00 37.94 4.44
4052 4282 2.122729 TGGGAGTGGGAGTGGGAG 59.877 66.667 0.00 0.00 0.00 4.30
4054 4284 1.390926 GGGAGTGGGAGTGGGAGTA 59.609 63.158 0.00 0.00 0.00 2.59
4055 4285 0.688087 GGGAGTGGGAGTGGGAGTAG 60.688 65.000 0.00 0.00 0.00 2.57
4056 4286 0.688087 GGAGTGGGAGTGGGAGTAGG 60.688 65.000 0.00 0.00 0.00 3.18
4059 4289 2.040606 GGGAGTGGGAGTAGGGCA 59.959 66.667 0.00 0.00 0.00 5.36
4084 4314 1.202915 TCCCAGCACTCAAGCATTTCA 60.203 47.619 0.00 0.00 36.85 2.69
4126 4356 1.115326 GGTGGCTTTTGAGCAAGGGT 61.115 55.000 0.47 0.00 36.33 4.34
4194 4424 1.671742 GGAGGAACGTGGAAGAGCA 59.328 57.895 0.00 0.00 0.00 4.26
4206 4436 0.964358 GAAGAGCACCTGCAGGCATT 60.964 55.000 33.06 18.96 45.16 3.56
4220 4450 0.539438 GGCATTCACAACCTGGGTGA 60.539 55.000 20.68 10.28 43.12 4.02
4231 4461 0.400213 CCTGGGTGAGTTGCAGGTAA 59.600 55.000 0.00 0.00 0.00 2.85
4298 4528 1.349627 CTAAATCTGCGCTGCGTGG 59.650 57.895 24.04 15.85 0.00 4.94
4318 4548 1.893808 GCAATCGACGGCCATCCAT 60.894 57.895 2.24 0.00 0.00 3.41
4350 4580 2.229792 GTTGACATCAGCCAAGGAACA 58.770 47.619 0.00 0.00 0.00 3.18
4351 4581 2.189594 TGACATCAGCCAAGGAACAG 57.810 50.000 0.00 0.00 0.00 3.16
4353 4583 2.106338 TGACATCAGCCAAGGAACAGAA 59.894 45.455 0.00 0.00 0.00 3.02
4354 4584 2.485814 GACATCAGCCAAGGAACAGAAC 59.514 50.000 0.00 0.00 0.00 3.01
4355 4585 1.466167 CATCAGCCAAGGAACAGAACG 59.534 52.381 0.00 0.00 0.00 3.95
4356 4586 0.468226 TCAGCCAAGGAACAGAACGT 59.532 50.000 0.00 0.00 0.00 3.99
4357 4587 0.868406 CAGCCAAGGAACAGAACGTC 59.132 55.000 0.00 0.00 0.00 4.34
4358 4588 0.250338 AGCCAAGGAACAGAACGTCC 60.250 55.000 0.00 0.00 0.00 4.79
4363 4593 3.262420 CAAGGAACAGAACGTCCCTATG 58.738 50.000 0.00 0.00 0.00 2.23
4364 4594 1.831736 AGGAACAGAACGTCCCTATGG 59.168 52.381 0.00 0.00 0.00 2.74
4388 4621 8.692710 TGGTATTTATACGGAGGAGCAATATAG 58.307 37.037 0.00 0.00 34.11 1.31
4389 4622 8.142551 GGTATTTATACGGAGGAGCAATATAGG 58.857 40.741 0.00 0.00 34.11 2.57
4390 4623 5.593679 TTATACGGAGGAGCAATATAGGC 57.406 43.478 0.00 0.00 0.00 3.93
4391 4624 1.717032 ACGGAGGAGCAATATAGGCA 58.283 50.000 2.55 0.00 0.00 4.75
4392 4625 2.260822 ACGGAGGAGCAATATAGGCAT 58.739 47.619 2.55 0.00 0.00 4.40
4393 4626 2.234908 ACGGAGGAGCAATATAGGCATC 59.765 50.000 2.55 0.00 0.00 3.91
4395 4628 3.430098 CGGAGGAGCAATATAGGCATCTC 60.430 52.174 2.55 7.39 34.25 2.75
4396 4629 3.517100 GGAGGAGCAATATAGGCATCTCA 59.483 47.826 16.21 0.00 35.63 3.27
4397 4630 4.019860 GGAGGAGCAATATAGGCATCTCAA 60.020 45.833 16.21 0.00 35.63 3.02
4398 4631 5.339035 GGAGGAGCAATATAGGCATCTCAAT 60.339 44.000 16.21 0.00 35.63 2.57
4399 4632 6.137104 AGGAGCAATATAGGCATCTCAATT 57.863 37.500 2.55 0.00 0.00 2.32
4475 4729 2.024176 TCCTCCCAGTCAGCTGTAAA 57.976 50.000 14.67 0.00 41.02 2.01
4480 4734 3.445008 TCCCAGTCAGCTGTAAATCTCT 58.555 45.455 14.67 0.00 41.02 3.10
4484 4738 5.123027 CCCAGTCAGCTGTAAATCTCTTTTC 59.877 44.000 14.67 0.00 41.02 2.29
4486 4740 6.429385 CCAGTCAGCTGTAAATCTCTTTTCTT 59.571 38.462 14.67 0.00 41.02 2.52
4488 4742 8.014517 CAGTCAGCTGTAAATCTCTTTTCTTTC 58.985 37.037 14.67 0.00 37.92 2.62
4489 4743 7.936301 AGTCAGCTGTAAATCTCTTTTCTTTCT 59.064 33.333 14.67 0.00 0.00 2.52
4490 4744 8.563732 GTCAGCTGTAAATCTCTTTTCTTTCTT 58.436 33.333 14.67 0.00 0.00 2.52
4491 4745 8.778358 TCAGCTGTAAATCTCTTTTCTTTCTTC 58.222 33.333 14.67 0.00 0.00 2.87
4492 4746 8.782144 CAGCTGTAAATCTCTTTTCTTTCTTCT 58.218 33.333 5.25 0.00 0.00 2.85
4524 4778 5.831525 TGAACGATCTGGAAGCTAGGTATTA 59.168 40.000 0.00 0.00 0.00 0.98
4532 4786 6.039047 TCTGGAAGCTAGGTATTAGTACAACG 59.961 42.308 0.00 0.00 32.25 4.10
4545 4799 9.525409 GTATTAGTACAACGGATTGATTACACT 57.475 33.333 0.00 0.00 39.30 3.55
4551 4805 4.882671 ACGGATTGATTACACTCATTGC 57.117 40.909 0.00 0.00 0.00 3.56
4556 4810 5.528690 GGATTGATTACACTCATTGCTAGCA 59.471 40.000 14.93 14.93 0.00 3.49
4606 4868 8.668510 AAATCTCTAGTGCCACATATTACAAG 57.331 34.615 0.00 0.00 0.00 3.16
4635 4897 7.901029 TCTTTTATAACATGGCCATCAAAACA 58.099 30.769 17.61 3.05 0.00 2.83
4637 4899 6.849085 TTATAACATGGCCATCAAAACACT 57.151 33.333 17.61 0.00 0.00 3.55
4645 4907 5.015515 TGGCCATCAAAACACTGATAATCA 58.984 37.500 0.00 0.00 34.20 2.57
4674 4936 9.039870 CATATTGCAGTGTTTTTAAAACCTCAA 57.960 29.630 16.62 16.13 0.00 3.02
4683 4945 6.805760 TGTTTTTAAAACCTCAACGTGTTACC 59.194 34.615 16.62 0.00 0.00 2.85
4685 4947 5.738118 TTAAAACCTCAACGTGTTACCAG 57.262 39.130 0.00 0.00 0.00 4.00
4703 4965 8.590204 TGTTACCAGATTTCACTATGTACTTCA 58.410 33.333 0.00 0.00 0.00 3.02
4709 4971 9.979270 CAGATTTCACTATGTACTTCATGTTTC 57.021 33.333 0.00 0.00 37.91 2.78
4718 4980 6.303021 TGTACTTCATGTTTCCGGTTTAAC 57.697 37.500 0.00 5.64 0.00 2.01
4731 4993 3.128068 CCGGTTTAACCTTTAGTGCATCC 59.872 47.826 12.66 0.00 35.66 3.51
4739 5001 5.609533 ACCTTTAGTGCATCCGTAGTTAT 57.390 39.130 0.00 0.00 0.00 1.89
4740 5002 5.598769 ACCTTTAGTGCATCCGTAGTTATC 58.401 41.667 0.00 0.00 0.00 1.75
4741 5003 5.128171 ACCTTTAGTGCATCCGTAGTTATCA 59.872 40.000 0.00 0.00 0.00 2.15
4742 5004 5.462398 CCTTTAGTGCATCCGTAGTTATCAC 59.538 44.000 0.00 0.00 0.00 3.06
4743 5005 5.585820 TTAGTGCATCCGTAGTTATCACA 57.414 39.130 0.00 0.00 0.00 3.58
4744 5006 4.046938 AGTGCATCCGTAGTTATCACAG 57.953 45.455 0.00 0.00 0.00 3.66
4745 5007 3.447586 AGTGCATCCGTAGTTATCACAGT 59.552 43.478 0.00 0.00 0.00 3.55
4747 5009 4.032900 GTGCATCCGTAGTTATCACAGTTG 59.967 45.833 0.00 0.00 0.00 3.16
4759 5023 4.974645 ATCACAGTTGTTACCTTCCTGA 57.025 40.909 0.00 0.00 0.00 3.86
4762 5026 4.102524 TCACAGTTGTTACCTTCCTGACAT 59.897 41.667 0.00 0.00 0.00 3.06
4765 5029 3.146066 GTTGTTACCTTCCTGACATGCA 58.854 45.455 0.00 0.00 0.00 3.96
4766 5030 3.719268 TGTTACCTTCCTGACATGCAT 57.281 42.857 0.00 0.00 0.00 3.96
4767 5031 3.346315 TGTTACCTTCCTGACATGCATG 58.654 45.455 25.09 25.09 0.00 4.06
4768 5032 2.684881 GTTACCTTCCTGACATGCATGG 59.315 50.000 29.41 12.86 0.00 3.66
4769 5033 0.700564 ACCTTCCTGACATGCATGGT 59.299 50.000 29.41 15.59 0.00 3.55
4770 5034 1.100510 CCTTCCTGACATGCATGGTG 58.899 55.000 29.41 17.86 0.00 4.17
4771 5035 1.340308 CCTTCCTGACATGCATGGTGA 60.340 52.381 29.41 16.64 0.00 4.02
4772 5036 2.439409 CTTCCTGACATGCATGGTGAA 58.561 47.619 29.41 21.67 0.00 3.18
4773 5037 1.825090 TCCTGACATGCATGGTGAAC 58.175 50.000 29.41 15.17 0.00 3.18
4774 5038 0.813184 CCTGACATGCATGGTGAACC 59.187 55.000 29.41 11.87 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.516161 GGTGGTTGGTCCTAAACGAC 58.484 55.000 0.00 0.00 36.03 4.34
3 4 0.397564 GGGTGGTTGGTCCTAAACGA 59.602 55.000 0.00 0.00 37.07 3.85
4 5 0.108963 TGGGTGGTTGGTCCTAAACG 59.891 55.000 0.00 0.00 37.07 3.60
5 6 2.597578 ATGGGTGGTTGGTCCTAAAC 57.402 50.000 0.00 0.00 37.07 2.01
29 30 1.210478 TGCAGCCTGAACTTATCCTCC 59.790 52.381 0.00 0.00 0.00 4.30
30 31 2.698855 TGCAGCCTGAACTTATCCTC 57.301 50.000 0.00 0.00 0.00 3.71
31 32 3.659183 AATGCAGCCTGAACTTATCCT 57.341 42.857 0.00 0.00 0.00 3.24
75 76 2.586258 TCGAGAGTGCTATGCTTTCC 57.414 50.000 0.00 0.00 0.00 3.13
76 77 3.062774 GGTTTCGAGAGTGCTATGCTTTC 59.937 47.826 0.00 0.00 0.00 2.62
81 82 2.093973 ACCTGGTTTCGAGAGTGCTATG 60.094 50.000 0.00 0.00 0.00 2.23
84 85 1.272769 GTACCTGGTTTCGAGAGTGCT 59.727 52.381 3.84 0.00 0.00 4.40
92 93 5.952526 AATTAAGTTGGTACCTGGTTTCG 57.047 39.130 14.36 0.00 0.00 3.46
119 121 4.693283 CAGCGATATACAGGAGAAAACCA 58.307 43.478 0.00 0.00 0.00 3.67
151 153 5.411831 AATTTTGGAAGCAAAGGAGGATC 57.588 39.130 0.00 0.00 0.00 3.36
179 181 7.399191 ACACCTCTTAGAGTGGATGTTACATTA 59.601 37.037 8.55 0.00 33.31 1.90
180 182 6.213600 ACACCTCTTAGAGTGGATGTTACATT 59.786 38.462 8.55 0.00 33.31 2.71
181 183 5.721960 ACACCTCTTAGAGTGGATGTTACAT 59.278 40.000 8.55 0.00 33.31 2.29
182 184 5.084519 ACACCTCTTAGAGTGGATGTTACA 58.915 41.667 8.55 0.00 33.31 2.41
183 185 5.662674 ACACCTCTTAGAGTGGATGTTAC 57.337 43.478 8.55 0.00 33.31 2.50
184 186 6.681729 AAACACCTCTTAGAGTGGATGTTA 57.318 37.500 8.55 0.00 34.86 2.41
185 187 5.568620 AAACACCTCTTAGAGTGGATGTT 57.431 39.130 8.55 9.77 36.08 2.71
186 188 6.681729 TTAAACACCTCTTAGAGTGGATGT 57.318 37.500 8.55 4.49 33.31 3.06
187 189 7.878127 TCTTTTAAACACCTCTTAGAGTGGATG 59.122 37.037 8.55 3.91 33.31 3.51
188 190 7.974504 TCTTTTAAACACCTCTTAGAGTGGAT 58.025 34.615 8.55 3.59 33.31 3.41
189 191 7.369551 TCTTTTAAACACCTCTTAGAGTGGA 57.630 36.000 8.55 0.00 33.31 4.02
190 192 7.497909 TGTTCTTTTAAACACCTCTTAGAGTGG 59.502 37.037 8.55 2.42 34.31 4.00
191 193 8.433421 TGTTCTTTTAAACACCTCTTAGAGTG 57.567 34.615 8.55 8.95 34.31 3.51
192 194 9.274206 GATGTTCTTTTAAACACCTCTTAGAGT 57.726 33.333 8.55 0.00 41.65 3.24
193 195 8.722394 GGATGTTCTTTTAAACACCTCTTAGAG 58.278 37.037 1.56 1.56 41.65 2.43
194 196 8.215050 TGGATGTTCTTTTAAACACCTCTTAGA 58.785 33.333 0.00 0.00 41.65 2.10
195 197 8.290325 GTGGATGTTCTTTTAAACACCTCTTAG 58.710 37.037 0.00 0.00 41.65 2.18
196 198 7.229907 GGTGGATGTTCTTTTAAACACCTCTTA 59.770 37.037 11.23 0.00 41.65 2.10
197 199 6.040504 GGTGGATGTTCTTTTAAACACCTCTT 59.959 38.462 11.23 0.00 41.65 2.85
198 200 5.535030 GGTGGATGTTCTTTTAAACACCTCT 59.465 40.000 11.23 0.00 41.65 3.69
199 201 5.769367 GGTGGATGTTCTTTTAAACACCTC 58.231 41.667 11.23 2.30 41.65 3.85
200 202 5.784578 GGTGGATGTTCTTTTAAACACCT 57.215 39.130 11.23 0.00 41.65 4.00
201 203 5.784578 AGGTGGATGTTCTTTTAAACACC 57.215 39.130 10.74 10.74 45.56 4.16
202 204 7.039313 AGAAGGTGGATGTTCTTTTAAACAC 57.961 36.000 0.00 0.00 41.65 3.32
203 205 7.654022 AAGAAGGTGGATGTTCTTTTAAACA 57.346 32.000 0.00 0.00 39.48 2.83
204 206 9.063615 TCTAAGAAGGTGGATGTTCTTTTAAAC 57.936 33.333 2.87 0.00 41.96 2.01
205 207 9.635404 TTCTAAGAAGGTGGATGTTCTTTTAAA 57.365 29.630 2.87 0.00 41.96 1.52
206 208 9.284968 CTTCTAAGAAGGTGGATGTTCTTTTAA 57.715 33.333 2.87 0.00 41.96 1.52
207 209 7.883311 CCTTCTAAGAAGGTGGATGTTCTTTTA 59.117 37.037 0.00 0.00 41.96 1.52
208 210 6.717084 CCTTCTAAGAAGGTGGATGTTCTTTT 59.283 38.462 0.00 0.00 41.96 2.27
209 211 6.241645 CCTTCTAAGAAGGTGGATGTTCTTT 58.758 40.000 0.00 0.00 41.96 2.52
210 212 5.280727 CCCTTCTAAGAAGGTGGATGTTCTT 60.281 44.000 2.06 3.09 43.73 2.52
211 213 4.226168 CCCTTCTAAGAAGGTGGATGTTCT 59.774 45.833 2.06 0.00 35.65 3.01
212 214 4.019231 ACCCTTCTAAGAAGGTGGATGTTC 60.019 45.833 2.06 0.00 35.65 3.18
213 215 3.916989 ACCCTTCTAAGAAGGTGGATGTT 59.083 43.478 2.06 0.00 35.65 2.71
214 216 3.532102 ACCCTTCTAAGAAGGTGGATGT 58.468 45.455 2.06 0.00 35.65 3.06
215 217 4.265073 CAACCCTTCTAAGAAGGTGGATG 58.735 47.826 2.06 2.17 35.65 3.51
216 218 3.267031 CCAACCCTTCTAAGAAGGTGGAT 59.733 47.826 16.49 0.00 38.49 3.41
217 219 2.642807 CCAACCCTTCTAAGAAGGTGGA 59.357 50.000 16.49 0.00 38.49 4.02
218 220 2.642807 TCCAACCCTTCTAAGAAGGTGG 59.357 50.000 15.73 15.73 37.93 4.61
219 221 4.072839 GTTCCAACCCTTCTAAGAAGGTG 58.927 47.826 2.06 7.57 35.65 4.00
220 222 3.981375 AGTTCCAACCCTTCTAAGAAGGT 59.019 43.478 2.06 5.00 35.65 3.50
221 223 4.642466 AGTTCCAACCCTTCTAAGAAGG 57.358 45.455 0.00 0.00 37.17 3.46
222 224 7.225011 AGTAAAGTTCCAACCCTTCTAAGAAG 58.775 38.462 0.00 0.00 0.00 2.85
223 225 7.145474 AGTAAAGTTCCAACCCTTCTAAGAA 57.855 36.000 0.00 0.00 0.00 2.52
244 246 6.947644 TCAAATAGTATGTGCGAGGTAGTA 57.052 37.500 0.00 0.00 0.00 1.82
249 251 5.991328 ACATTCAAATAGTATGTGCGAGG 57.009 39.130 0.00 0.00 36.94 4.63
252 254 9.210426 GTCTTTAACATTCAAATAGTATGTGCG 57.790 33.333 0.00 0.00 38.13 5.34
264 266 7.397892 TCCAAACTGTGTCTTTAACATTCAA 57.602 32.000 0.00 0.00 40.80 2.69
269 271 7.175990 AGTTTCTTCCAAACTGTGTCTTTAACA 59.824 33.333 0.00 0.00 38.88 2.41
281 283 5.589050 GTGTTCTGGTAGTTTCTTCCAAACT 59.411 40.000 5.16 5.16 42.53 2.66
309 311 5.166398 AGCTGCATCAAAATTTAGCTTCAC 58.834 37.500 1.02 0.00 38.24 3.18
316 318 7.167924 TCATGGTAAGCTGCATCAAAATTTA 57.832 32.000 1.02 0.00 0.00 1.40
324 326 4.070009 TGATCATCATGGTAAGCTGCATC 58.930 43.478 1.02 0.00 0.00 3.91
329 331 5.711506 TGTGTTTTGATCATCATGGTAAGCT 59.288 36.000 0.00 0.00 0.00 3.74
331 333 6.151648 ACCTGTGTTTTGATCATCATGGTAAG 59.848 38.462 0.00 0.00 0.00 2.34
332 334 6.009589 ACCTGTGTTTTGATCATCATGGTAA 58.990 36.000 0.00 0.00 0.00 2.85
333 335 5.415389 CACCTGTGTTTTGATCATCATGGTA 59.585 40.000 0.00 0.00 0.00 3.25
334 336 4.219070 CACCTGTGTTTTGATCATCATGGT 59.781 41.667 0.00 6.97 0.00 3.55
335 337 4.740268 CACCTGTGTTTTGATCATCATGG 58.260 43.478 0.00 6.42 0.00 3.66
336 338 4.082408 AGCACCTGTGTTTTGATCATCATG 60.082 41.667 0.00 0.00 0.00 3.07
337 339 4.084287 AGCACCTGTGTTTTGATCATCAT 58.916 39.130 0.00 0.00 0.00 2.45
338 340 3.489355 AGCACCTGTGTTTTGATCATCA 58.511 40.909 0.00 0.00 0.00 3.07
339 341 3.755378 AGAGCACCTGTGTTTTGATCATC 59.245 43.478 0.00 0.00 0.00 2.92
340 342 3.759581 AGAGCACCTGTGTTTTGATCAT 58.240 40.909 0.00 0.00 0.00 2.45
367 369 3.129638 GCGTGATCTCTTAAGACCACTCT 59.870 47.826 18.19 0.00 43.07 3.24
392 394 2.617308 CCATCAGCAGCCATAAACTGAG 59.383 50.000 0.00 0.00 42.07 3.35
409 411 2.486966 GCAAGTGCTTCGGCCATC 59.513 61.111 2.24 0.00 40.91 3.51
421 423 1.905215 AGTCCTGTCTGCATAGCAAGT 59.095 47.619 0.00 0.00 38.41 3.16
437 439 3.260740 CATGAACTGCAAGAGAGAGTCC 58.739 50.000 0.00 0.00 37.43 3.85
458 500 2.028020 CCTTCACCTTACTGTCTCCCAC 60.028 54.545 0.00 0.00 0.00 4.61
465 507 1.272769 GACTCGCCTTCACCTTACTGT 59.727 52.381 0.00 0.00 0.00 3.55
496 539 7.647715 GTCACTTTTGCAAGCTTCAATTACTTA 59.352 33.333 0.00 0.00 32.57 2.24
519 562 2.529632 AGCAGTCCATGTAGACAGTCA 58.470 47.619 2.66 0.00 39.34 3.41
543 586 6.530601 AGCCTTCCCTATTACATTAACCAT 57.469 37.500 0.00 0.00 0.00 3.55
581 625 8.187913 TGAGCTATCTCACTAGCATTTCTATT 57.812 34.615 5.94 0.00 45.35 1.73
596 640 5.046735 TGCCTGGAAATCTATGAGCTATCTC 60.047 44.000 0.00 0.00 39.78 2.75
597 641 4.842948 TGCCTGGAAATCTATGAGCTATCT 59.157 41.667 0.00 0.00 0.00 1.98
598 642 5.157940 TGCCTGGAAATCTATGAGCTATC 57.842 43.478 0.00 0.00 0.00 2.08
613 658 2.673775 TCCTCAAAACAATGCCTGGA 57.326 45.000 0.00 0.00 0.00 3.86
619 664 8.472413 ACATTCAATCCTATCCTCAAAACAATG 58.528 33.333 0.00 0.00 0.00 2.82
631 676 8.352942 GTTGACCCAATTACATTCAATCCTATC 58.647 37.037 0.00 0.00 0.00 2.08
633 678 7.410174 AGTTGACCCAATTACATTCAATCCTA 58.590 34.615 0.00 0.00 0.00 2.94
642 687 6.326323 ACAAAAGGAAGTTGACCCAATTACAT 59.674 34.615 0.00 0.00 0.00 2.29
650 695 7.497595 AGAAATTAACAAAAGGAAGTTGACCC 58.502 34.615 0.00 0.00 0.00 4.46
652 697 8.126700 TCGAGAAATTAACAAAAGGAAGTTGAC 58.873 33.333 0.00 0.00 0.00 3.18
659 704 9.292195 ACCTTTATCGAGAAATTAACAAAAGGA 57.708 29.630 14.96 0.00 41.82 3.36
664 709 9.932207 TGACTACCTTTATCGAGAAATTAACAA 57.068 29.630 5.56 0.00 0.00 2.83
669 714 9.265901 CATCATGACTACCTTTATCGAGAAATT 57.734 33.333 5.56 0.00 0.00 1.82
674 757 4.926238 GCCATCATGACTACCTTTATCGAG 59.074 45.833 0.00 0.00 0.00 4.04
677 760 5.234466 AGGCCATCATGACTACCTTTATC 57.766 43.478 5.01 0.00 0.00 1.75
732 817 6.036735 TCTGCTTTATTTCACTATAACCGTGC 59.963 38.462 0.00 0.00 32.54 5.34
773 862 5.643777 GGCGTATAAGCAGTCCATTATTGAT 59.356 40.000 12.77 0.00 39.27 2.57
833 922 6.323996 CACAACTAGATATCTGTTCCCTGGTA 59.676 42.308 15.79 0.00 0.00 3.25
834 923 5.129485 CACAACTAGATATCTGTTCCCTGGT 59.871 44.000 15.79 8.27 0.00 4.00
835 924 5.129485 ACACAACTAGATATCTGTTCCCTGG 59.871 44.000 15.79 7.75 0.00 4.45
837 926 5.129485 CCACACAACTAGATATCTGTTCCCT 59.871 44.000 15.79 1.10 0.00 4.20
838 927 5.128827 TCCACACAACTAGATATCTGTTCCC 59.871 44.000 15.79 0.00 0.00 3.97
845 935 7.068348 TGAGTTACCTCCACACAACTAGATATC 59.932 40.741 0.00 0.00 36.86 1.63
878 968 5.826643 TCCTTTAGTTGGCCATTGTATTCT 58.173 37.500 6.09 0.00 0.00 2.40
892 982 5.147767 AGAATGGTGGCTTTTCCTTTAGTT 58.852 37.500 0.00 0.00 35.26 2.24
900 990 5.880332 TGTGAGTATAGAATGGTGGCTTTTC 59.120 40.000 0.00 0.00 0.00 2.29
901 991 5.815581 TGTGAGTATAGAATGGTGGCTTTT 58.184 37.500 0.00 0.00 0.00 2.27
916 1006 8.255111 TGGATTTCTGTATGATCTGTGAGTAT 57.745 34.615 0.00 0.00 0.00 2.12
958 1048 3.576118 TCCTCTCTCAAACTCTTCTGTGG 59.424 47.826 0.00 0.00 0.00 4.17
984 1076 2.159393 TGCCATTAATTGCACTCTTCGC 60.159 45.455 10.00 0.00 31.31 4.70
1005 1097 1.605712 GCAACACTGGTCGCTAACTCT 60.606 52.381 0.00 0.00 0.00 3.24
1047 1139 3.244353 CCAGAGAACCAAGCTTCTCAAGA 60.244 47.826 14.12 0.00 46.04 3.02
1068 1160 3.275338 GCATACTCTGCCGCTGCC 61.275 66.667 0.00 0.00 45.66 4.85
1094 1186 4.504916 CCTCTCTGCGGTCGCTGG 62.505 72.222 19.01 11.16 42.51 4.85
1167 1259 9.482627 GTTAATGGATCAAGGTTCTCTATGTAG 57.517 37.037 0.00 0.00 0.00 2.74
1272 1364 2.883386 CCAATCCTTAGCTCCATCTTGC 59.117 50.000 0.00 0.00 0.00 4.01
1314 1406 5.651576 GCCCTCTCTGAGATCTTTGAAAAAT 59.348 40.000 8.00 0.00 0.00 1.82
1343 1435 8.920174 TGATTTGATTGATCTGCTTGGATAAAT 58.080 29.630 0.00 0.00 31.42 1.40
1353 1445 3.714391 GGCCTTGATTTGATTGATCTGC 58.286 45.455 0.00 0.00 0.00 4.26
1376 1468 3.280920 GCGCTTAGCTCTGCTACAT 57.719 52.632 0.00 0.00 41.12 2.29
1412 1504 7.551585 AGATGTAGAGATGACTTCGTCAATTT 58.448 34.615 0.36 0.00 45.96 1.82
1414 1506 6.707440 AGATGTAGAGATGACTTCGTCAAT 57.293 37.500 0.36 0.00 45.96 2.57
1440 1532 1.656652 GAGGATCAATGGACACACGG 58.343 55.000 0.00 0.00 33.17 4.94
1442 1534 2.093973 AGTCGAGGATCAATGGACACAC 60.094 50.000 12.62 0.00 33.17 3.82
1485 1577 2.635443 AATTCCAACAAGGCCGGCG 61.635 57.895 22.54 9.65 37.29 6.46
1491 1583 4.081406 TCTGTCCATCAATTCCAACAAGG 58.919 43.478 0.00 0.00 39.47 3.61
1536 1628 3.274288 CTTTAGGTGCTGGTCATCCTTC 58.726 50.000 0.00 0.00 31.62 3.46
1567 1665 4.352893 CCTAAACCTCCAAATCCCACAAT 58.647 43.478 0.00 0.00 0.00 2.71
1634 1732 6.534793 GTCAAATCTGTTTTCATGGTGTTGTT 59.465 34.615 0.00 0.00 0.00 2.83
1648 1746 5.779529 AATGCTTGACAGTCAAATCTGTT 57.220 34.783 16.85 5.58 46.81 3.16
1734 1832 3.976793 TCCGACGATGTTGTATCTACC 57.023 47.619 0.00 0.00 0.00 3.18
1737 1835 7.450124 ACTATTATCCGACGATGTTGTATCT 57.550 36.000 0.00 0.00 0.00 1.98
1949 2151 6.542005 TCTGCATCATAACGTCAATTTGGTAT 59.458 34.615 0.00 0.00 0.00 2.73
2005 2207 7.421087 ACTCCCTCTATACTTTTGGTACTTC 57.579 40.000 0.00 0.00 32.72 3.01
2442 2646 8.124823 CGTGTAGTTACGATTAATCTACTTCCA 58.875 37.037 13.45 10.30 46.46 3.53
2512 2716 6.538742 TCGAGAGGTTTCATTGGATAAACATC 59.461 38.462 4.87 4.87 43.25 3.06
2584 2788 7.615582 TTAAGTATTCAGGACAAGCATCTTG 57.384 36.000 5.13 5.13 0.00 3.02
2620 2824 7.056635 CCACCACATTTCCTTATTATCTCAGT 58.943 38.462 0.00 0.00 0.00 3.41
2685 2889 2.753452 CCGCTCTGGTGTCTTCTTACTA 59.247 50.000 0.00 0.00 0.00 1.82
2703 2907 1.821332 CTCCCAATGCTCCTTCCGC 60.821 63.158 0.00 0.00 0.00 5.54
2706 2910 0.182299 CCCTCTCCCAATGCTCCTTC 59.818 60.000 0.00 0.00 0.00 3.46
2715 2919 2.111972 AGAACTCTGTACCCTCTCCCAA 59.888 50.000 0.00 0.00 0.00 4.12
2721 2925 2.615747 GCCCAAAGAACTCTGTACCCTC 60.616 54.545 0.00 0.00 0.00 4.30
2727 2931 0.550914 TGGTGCCCAAAGAACTCTGT 59.449 50.000 0.00 0.00 0.00 3.41
2862 3066 3.740631 TCATCTGTCATGATCTTCCGG 57.259 47.619 0.00 0.00 0.00 5.14
2866 3070 6.420638 TCACCAAATCATCTGTCATGATCTT 58.579 36.000 0.00 0.00 37.75 2.40
2868 3072 6.688637 TTCACCAAATCATCTGTCATGATC 57.311 37.500 0.00 0.00 37.75 2.92
2877 3081 3.449737 CCCATTGCTTCACCAAATCATCT 59.550 43.478 0.00 0.00 0.00 2.90
2960 3164 5.702865 TGTTGACAAGCTCATTGAAATAGC 58.297 37.500 0.00 0.00 41.83 2.97
3157 3361 4.259356 TGATTCTCTTGGTCAGATTGCAG 58.741 43.478 0.00 0.00 0.00 4.41
3203 3407 1.651138 GCGATCGAACTTGTGTCAGAG 59.349 52.381 21.57 0.00 0.00 3.35
3238 3442 5.491070 CCTGTCAACAGAATCACCAGAATA 58.509 41.667 11.70 0.00 46.59 1.75
3239 3443 4.330250 CCTGTCAACAGAATCACCAGAAT 58.670 43.478 11.70 0.00 46.59 2.40
3242 3446 2.224621 ACCCTGTCAACAGAATCACCAG 60.225 50.000 11.70 0.00 46.59 4.00
3245 3449 3.375299 GCATACCCTGTCAACAGAATCAC 59.625 47.826 11.70 0.00 46.59 3.06
3246 3450 3.264193 AGCATACCCTGTCAACAGAATCA 59.736 43.478 11.70 0.00 46.59 2.57
3247 3451 3.873952 GAGCATACCCTGTCAACAGAATC 59.126 47.826 11.70 0.00 46.59 2.52
3248 3452 3.264193 TGAGCATACCCTGTCAACAGAAT 59.736 43.478 11.70 2.07 46.59 2.40
3249 3453 2.637382 TGAGCATACCCTGTCAACAGAA 59.363 45.455 11.70 0.00 46.59 3.02
3250 3454 2.256306 TGAGCATACCCTGTCAACAGA 58.744 47.619 11.70 0.00 46.59 3.41
3251 3455 2.768253 TGAGCATACCCTGTCAACAG 57.232 50.000 3.08 3.08 43.40 3.16
3252 3456 2.290260 CCTTGAGCATACCCTGTCAACA 60.290 50.000 0.00 0.00 0.00 3.33
3253 3457 2.359900 CCTTGAGCATACCCTGTCAAC 58.640 52.381 0.00 0.00 0.00 3.18
3266 3470 3.250040 TCGAACAAACTTTAGCCTTGAGC 59.750 43.478 0.00 0.00 44.25 4.26
3270 3474 3.813724 GGACTCGAACAAACTTTAGCCTT 59.186 43.478 0.00 0.00 0.00 4.35
3283 3487 3.576648 CTTCAACCACTAGGACTCGAAC 58.423 50.000 0.00 0.00 38.69 3.95
3310 3514 2.223829 CCATGTCGTCCAGAGTGATACC 60.224 54.545 0.00 0.00 0.00 2.73
3315 3519 0.738762 CAGCCATGTCGTCCAGAGTG 60.739 60.000 0.00 0.00 0.00 3.51
3379 3583 7.054751 ACTGCATCATCCTCATAATCCATATG 58.945 38.462 0.00 0.00 42.40 1.78
3388 3595 6.659668 GGTAGTAGTACTGCATCATCCTCATA 59.340 42.308 18.55 0.00 32.12 2.15
3394 3601 5.048364 CAGGAGGTAGTAGTACTGCATCATC 60.048 48.000 26.87 15.02 42.10 2.92
3395 3602 4.830046 CAGGAGGTAGTAGTACTGCATCAT 59.170 45.833 26.87 20.70 42.10 2.45
3400 3607 5.855740 ATTTCAGGAGGTAGTAGTACTGC 57.144 43.478 13.29 11.44 0.00 4.40
3401 3608 7.339721 TCAGAATTTCAGGAGGTAGTAGTACTG 59.660 40.741 13.29 0.00 0.00 2.74
3406 3613 8.017418 AGATTCAGAATTTCAGGAGGTAGTAG 57.983 38.462 0.00 0.00 0.00 2.57
3407 3614 7.979786 AGATTCAGAATTTCAGGAGGTAGTA 57.020 36.000 0.00 0.00 0.00 1.82
3408 3615 6.882768 AGATTCAGAATTTCAGGAGGTAGT 57.117 37.500 0.00 0.00 0.00 2.73
3409 3616 6.920758 CGTAGATTCAGAATTTCAGGAGGTAG 59.079 42.308 0.00 0.00 0.00 3.18
3437 3644 3.133901 TGCTATATCCAGCGTTTCCAGAA 59.866 43.478 0.00 0.00 44.88 3.02
3457 3664 3.070018 GGGTAGCATCATACACATCTGC 58.930 50.000 0.00 0.00 0.00 4.26
3465 3672 4.345257 TCTTCTGGAAGGGTAGCATCATAC 59.655 45.833 10.01 0.00 38.88 2.39
3466 3673 4.556697 TCTTCTGGAAGGGTAGCATCATA 58.443 43.478 10.01 0.00 38.88 2.15
3601 3811 5.175126 CGTTTATACAGGCTACGGAATTCTG 59.825 44.000 12.91 12.91 0.00 3.02
3658 3874 5.468746 GGTAGCAAGTGTCTGTATCAAAACA 59.531 40.000 0.00 0.00 0.00 2.83
3667 3883 0.687354 CCAGGGTAGCAAGTGTCTGT 59.313 55.000 0.00 0.00 0.00 3.41
3668 3884 0.674895 GCCAGGGTAGCAAGTGTCTG 60.675 60.000 0.00 0.00 0.00 3.51
3669 3885 1.679898 GCCAGGGTAGCAAGTGTCT 59.320 57.895 0.00 0.00 0.00 3.41
3682 3898 1.524621 CTACATTGCCCTCGCCAGG 60.525 63.158 0.00 0.00 39.98 4.45
3686 3902 0.389391 TAGAGCTACATTGCCCTCGC 59.611 55.000 0.00 0.00 0.00 5.03
3769 3991 3.069729 GGTAGAGATTGGTCGCCTTACAT 59.930 47.826 0.00 0.00 0.00 2.29
3773 3995 1.568504 TGGTAGAGATTGGTCGCCTT 58.431 50.000 0.00 0.00 0.00 4.35
3774 3996 1.568504 TTGGTAGAGATTGGTCGCCT 58.431 50.000 0.00 0.00 0.00 5.52
3797 4019 2.208431 GCAGACGCTTCAGCTGATTAT 58.792 47.619 19.04 3.46 39.32 1.28
3799 4021 0.321034 TGCAGACGCTTCAGCTGATT 60.321 50.000 19.04 2.02 39.64 2.57
3810 4032 1.009829 CTGGTAAGGAATGCAGACGC 58.990 55.000 0.00 0.00 39.24 5.19
3853 4075 4.202357 TGGAATAGTAGGCATGCGATCTTT 60.202 41.667 12.44 0.77 0.00 2.52
3919 4141 3.134081 GGGTTCAACCTCTCGATTCCATA 59.866 47.826 6.51 0.00 38.64 2.74
3972 4202 2.930109 TCTTGAGGTAGAGAAGGGCT 57.070 50.000 0.00 0.00 0.00 5.19
4006 4236 0.095245 ACGATTGTTTCAGCGATGCG 59.905 50.000 0.00 0.00 0.00 4.73
4033 4263 2.529136 CCCACTCCCACTCCCACA 60.529 66.667 0.00 0.00 0.00 4.17
4052 4282 4.645809 CTGGGAAAGCTGCCCTAC 57.354 61.111 21.84 1.15 46.19 3.18
4078 4308 3.674753 GGCGAACAAATGAGGTTGAAATG 59.325 43.478 0.00 0.00 32.59 2.32
4084 4314 1.579429 GCGGCGAACAAATGAGGTT 59.421 52.632 12.98 0.00 0.00 3.50
4126 4356 0.034767 CTCTGGAGCTTGGGCATTGA 60.035 55.000 0.00 0.00 41.70 2.57
4194 4424 1.181098 GGTTGTGAATGCCTGCAGGT 61.181 55.000 32.81 14.76 37.57 4.00
4206 4436 0.465460 GCAACTCACCCAGGTTGTGA 60.465 55.000 0.00 0.00 43.07 3.58
4220 4450 2.829720 TGTACCGAGATTACCTGCAACT 59.170 45.455 0.00 0.00 0.00 3.16
4298 4528 2.709475 GATGGCCGTCGATTGCAC 59.291 61.111 9.75 2.24 0.00 4.57
4318 4548 0.756294 ATGTCAACACGAGGGTCACA 59.244 50.000 0.00 0.00 0.00 3.58
4350 4580 6.071728 CCGTATAAATACCATAGGGACGTTCT 60.072 42.308 0.00 0.00 36.45 3.01
4351 4581 6.071952 TCCGTATAAATACCATAGGGACGTTC 60.072 42.308 0.00 0.00 37.77 3.95
4353 4583 5.324409 TCCGTATAAATACCATAGGGACGT 58.676 41.667 0.00 0.00 37.77 4.34
4354 4584 5.163581 CCTCCGTATAAATACCATAGGGACG 60.164 48.000 0.00 0.00 37.77 4.79
4355 4585 5.954150 TCCTCCGTATAAATACCATAGGGAC 59.046 44.000 0.00 0.00 37.77 4.46
4356 4586 6.156554 TCCTCCGTATAAATACCATAGGGA 57.843 41.667 0.00 4.31 39.44 4.20
4357 4587 5.163437 GCTCCTCCGTATAAATACCATAGGG 60.163 48.000 0.00 0.00 41.29 3.53
4358 4588 5.421056 TGCTCCTCCGTATAAATACCATAGG 59.579 44.000 0.00 0.00 0.00 2.57
4363 4593 8.142551 CCTATATTGCTCCTCCGTATAAATACC 58.857 40.741 0.00 0.00 0.00 2.73
4364 4594 7.652507 GCCTATATTGCTCCTCCGTATAAATAC 59.347 40.741 0.00 0.00 0.00 1.89
4388 4621 2.945008 TCATCGTCCAAATTGAGATGCC 59.055 45.455 15.66 0.00 38.71 4.40
4389 4622 4.825546 ATCATCGTCCAAATTGAGATGC 57.174 40.909 15.66 0.00 38.71 3.91
4390 4623 6.652062 TCCATATCATCGTCCAAATTGAGATG 59.348 38.462 14.86 14.86 37.49 2.90
4391 4624 6.652481 GTCCATATCATCGTCCAAATTGAGAT 59.348 38.462 0.00 0.00 0.00 2.75
4392 4625 5.991606 GTCCATATCATCGTCCAAATTGAGA 59.008 40.000 0.00 0.00 0.00 3.27
4393 4626 5.759763 TGTCCATATCATCGTCCAAATTGAG 59.240 40.000 0.00 0.00 0.00 3.02
4395 4628 6.429078 AGATGTCCATATCATCGTCCAAATTG 59.571 38.462 0.00 0.00 44.20 2.32
4396 4629 6.537355 AGATGTCCATATCATCGTCCAAATT 58.463 36.000 0.00 0.00 44.20 1.82
4397 4630 6.119240 AGATGTCCATATCATCGTCCAAAT 57.881 37.500 0.00 0.00 44.20 2.32
4398 4631 5.511373 GGAGATGTCCATATCATCGTCCAAA 60.511 44.000 3.49 0.00 44.20 3.28
4399 4632 4.021104 GGAGATGTCCATATCATCGTCCAA 60.021 45.833 3.49 0.00 44.20 3.53
4484 4738 9.658475 CAGATCGTTCATACTACTAGAAGAAAG 57.342 37.037 0.00 0.00 0.00 2.62
4486 4740 7.991460 TCCAGATCGTTCATACTACTAGAAGAA 59.009 37.037 0.00 0.00 0.00 2.52
4488 4742 7.731882 TCCAGATCGTTCATACTACTAGAAG 57.268 40.000 0.00 0.00 0.00 2.85
4489 4743 7.255173 GCTTCCAGATCGTTCATACTACTAGAA 60.255 40.741 0.00 0.00 0.00 2.10
4490 4744 6.205076 GCTTCCAGATCGTTCATACTACTAGA 59.795 42.308 0.00 0.00 0.00 2.43
4491 4745 6.205853 AGCTTCCAGATCGTTCATACTACTAG 59.794 42.308 0.00 0.00 0.00 2.57
4492 4746 6.062749 AGCTTCCAGATCGTTCATACTACTA 58.937 40.000 0.00 0.00 0.00 1.82
4493 4747 4.890581 AGCTTCCAGATCGTTCATACTACT 59.109 41.667 0.00 0.00 0.00 2.57
4494 4748 5.189659 AGCTTCCAGATCGTTCATACTAC 57.810 43.478 0.00 0.00 0.00 2.73
4495 4749 5.473846 CCTAGCTTCCAGATCGTTCATACTA 59.526 44.000 0.00 0.00 0.00 1.82
4496 4750 4.279671 CCTAGCTTCCAGATCGTTCATACT 59.720 45.833 0.00 0.00 0.00 2.12
4500 4754 2.457598 ACCTAGCTTCCAGATCGTTCA 58.542 47.619 0.00 0.00 0.00 3.18
4505 4759 7.762588 TGTACTAATACCTAGCTTCCAGATC 57.237 40.000 0.00 0.00 0.00 2.75
4524 4778 6.032956 TGAGTGTAATCAATCCGTTGTACT 57.967 37.500 0.00 0.00 37.80 2.73
4532 4786 5.528690 TGCTAGCAATGAGTGTAATCAATCC 59.471 40.000 16.84 0.00 37.80 3.01
4571 4825 8.349983 TGTGGCACTAGAGATTTTCTTTTAAAC 58.650 33.333 19.83 0.00 37.36 2.01
4577 4831 9.331282 GTAATATGTGGCACTAGAGATTTTCTT 57.669 33.333 19.83 0.47 37.36 2.52
4585 4839 9.197694 GATTACTTGTAATATGTGGCACTAGAG 57.802 37.037 19.83 7.75 0.00 2.43
4657 4919 6.693761 AACACGTTGAGGTTTTAAAAACAC 57.306 33.333 17.91 12.15 0.00 3.32
4674 4936 5.790593 ACATAGTGAAATCTGGTAACACGT 58.209 37.500 0.00 0.00 46.17 4.49
4683 4945 9.979270 GAAACATGAAGTACATAGTGAAATCTG 57.021 33.333 0.00 0.00 37.46 2.90
4685 4947 8.116753 CGGAAACATGAAGTACATAGTGAAATC 58.883 37.037 0.00 0.00 37.46 2.17
4703 4965 5.278610 GCACTAAAGGTTAAACCGGAAACAT 60.279 40.000 9.46 4.28 44.90 2.71
4709 4971 3.128068 GGATGCACTAAAGGTTAAACCGG 59.872 47.826 0.00 0.00 44.90 5.28
4718 4980 5.462398 GTGATAACTACGGATGCACTAAAGG 59.538 44.000 0.00 0.00 0.00 3.11
4731 4993 6.309737 GGAAGGTAACAACTGTGATAACTACG 59.690 42.308 0.00 0.00 29.26 3.51
4739 5001 3.452990 TGTCAGGAAGGTAACAACTGTGA 59.547 43.478 0.00 0.00 41.41 3.58
4740 5002 3.804036 TGTCAGGAAGGTAACAACTGTG 58.196 45.455 0.00 0.00 41.41 3.66
4741 5003 4.389374 CATGTCAGGAAGGTAACAACTGT 58.611 43.478 0.00 0.00 41.41 3.55
4742 5004 3.189287 GCATGTCAGGAAGGTAACAACTG 59.811 47.826 0.00 0.00 41.41 3.16
4743 5005 3.181445 TGCATGTCAGGAAGGTAACAACT 60.181 43.478 0.00 0.00 41.41 3.16
4744 5006 3.146066 TGCATGTCAGGAAGGTAACAAC 58.854 45.455 0.00 0.00 41.41 3.32
4745 5007 3.500448 TGCATGTCAGGAAGGTAACAA 57.500 42.857 0.00 0.00 41.41 2.83
4747 5009 2.684881 CCATGCATGTCAGGAAGGTAAC 59.315 50.000 24.58 0.00 0.00 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.