Multiple sequence alignment - TraesCS5D01G298800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G298800 chr5D 100.000 3704 0 0 1 3704 396428648 396432351 0.000000e+00 6841.0
1 TraesCS5D01G298800 chr5B 93.738 1597 60 12 1449 3019 476451821 476453403 0.000000e+00 2359.0
2 TraesCS5D01G298800 chr5B 93.900 1164 46 8 280 1430 476450601 476451752 0.000000e+00 1733.0
3 TraesCS5D01G298800 chr5B 90.870 230 14 4 24 252 476450198 476450421 6.010000e-78 302.0
4 TraesCS5D01G298800 chr5B 95.604 91 4 0 3184 3274 476453623 476453713 2.980000e-31 147.0
5 TraesCS5D01G298800 chr5B 86.735 98 12 1 3361 3458 28381537 28381633 1.410000e-19 108.0
6 TraesCS5D01G298800 chr5B 85.393 89 7 3 3362 3447 687397193 687397108 1.830000e-13 87.9
7 TraesCS5D01G298800 chr7A 88.587 1621 141 32 1449 3046 495431299 495432898 0.000000e+00 1929.0
8 TraesCS5D01G298800 chr7A 92.094 468 23 3 977 1430 495430763 495431230 0.000000e+00 647.0
9 TraesCS5D01G298800 chr7D 88.135 1635 134 36 1449 3045 444347644 444349256 0.000000e+00 1890.0
10 TraesCS5D01G298800 chr7D 91.810 464 22 4 978 1429 444347115 444347574 1.880000e-177 632.0
11 TraesCS5D01G298800 chr7B 90.645 1411 101 19 1500 2900 461201772 461203161 0.000000e+00 1845.0
12 TraesCS5D01G298800 chr7B 91.631 466 22 7 977 1430 461200947 461201407 2.430000e-176 628.0
13 TraesCS5D01G298800 chr7B 90.529 359 16 4 3363 3704 721400179 721400536 3.370000e-125 459.0
14 TraesCS5D01G298800 chr7B 82.114 123 13 5 3362 3484 733670907 733671020 3.040000e-16 97.1
15 TraesCS5D01G298800 chr3A 93.695 571 35 1 322 892 33432057 33431488 0.000000e+00 854.0
16 TraesCS5D01G298800 chr3A 93.695 571 34 2 322 892 193877175 193876607 0.000000e+00 854.0
17 TraesCS5D01G298800 chr3A 92.644 571 40 2 322 892 194064965 194064397 0.000000e+00 821.0
18 TraesCS5D01G298800 chr3A 91.434 572 43 6 322 892 193878361 193877795 0.000000e+00 780.0
19 TraesCS5D01G298800 chr3A 90.925 573 49 3 322 892 33433249 33432678 0.000000e+00 767.0
20 TraesCS5D01G298800 chr3A 90.909 572 46 5 322 892 194066152 194065586 0.000000e+00 763.0
21 TraesCS5D01G298800 chr3A 79.812 213 36 4 3363 3574 359365352 359365146 8.290000e-32 148.0
22 TraesCS5D01G298800 chr3B 90.233 430 32 7 466 892 41304910 41304488 1.500000e-153 553.0
23 TraesCS5D01G298800 chr3B 74.545 330 60 16 3384 3701 791990786 791990469 5.020000e-24 122.0
24 TraesCS5D01G298800 chr1D 92.857 252 11 1 1 252 332263803 332263559 3.520000e-95 359.0
25 TraesCS5D01G298800 chr6D 91.603 262 11 7 1 252 467086974 467086714 5.890000e-93 351.0
26 TraesCS5D01G298800 chr6D 90.588 85 8 0 1 85 33250909 33250825 3.020000e-21 113.0
27 TraesCS5D01G298800 chr6B 89.695 262 20 5 23 279 712264820 712264561 9.920000e-86 327.0
28 TraesCS5D01G298800 chr6B 84.979 233 34 1 1 233 70051096 70050865 6.180000e-58 235.0
29 TraesCS5D01G298800 chr6A 86.545 275 35 2 1 274 37843392 37843119 6.010000e-78 302.0
30 TraesCS5D01G298800 chr6A 87.500 136 15 2 3361 3495 586991185 586991051 4.950000e-34 156.0
31 TraesCS5D01G298800 chr6A 87.402 127 14 2 3359 3484 50190774 50190649 1.070000e-30 145.0
32 TraesCS5D01G298800 chr4D 86.667 135 16 2 3362 3495 312585740 312585607 8.290000e-32 148.0
33 TraesCS5D01G298800 chr2B 73.636 330 64 14 3384 3701 703839769 703839451 5.060000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G298800 chr5D 396428648 396432351 3703 False 6841.00 6841 100.0000 1 3704 1 chr5D.!!$F1 3703
1 TraesCS5D01G298800 chr5B 476450198 476453713 3515 False 1135.25 2359 93.5280 24 3274 4 chr5B.!!$F2 3250
2 TraesCS5D01G298800 chr7A 495430763 495432898 2135 False 1288.00 1929 90.3405 977 3046 2 chr7A.!!$F1 2069
3 TraesCS5D01G298800 chr7D 444347115 444349256 2141 False 1261.00 1890 89.9725 978 3045 2 chr7D.!!$F1 2067
4 TraesCS5D01G298800 chr7B 461200947 461203161 2214 False 1236.50 1845 91.1380 977 2900 2 chr7B.!!$F3 1923
5 TraesCS5D01G298800 chr3A 193876607 193878361 1754 True 817.00 854 92.5645 322 892 2 chr3A.!!$R3 570
6 TraesCS5D01G298800 chr3A 33431488 33433249 1761 True 810.50 854 92.3100 322 892 2 chr3A.!!$R2 570
7 TraesCS5D01G298800 chr3A 194064397 194066152 1755 True 792.00 821 91.7765 322 892 2 chr3A.!!$R4 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 1.382695 GGCAGCTACCCTCCCTACA 60.383 63.158 0.00 0.0 0.00 2.74 F
1023 2368 0.322456 CCGGTGGCAAGATCCAGAAA 60.322 55.000 0.00 0.0 36.67 2.52 F
1170 2527 0.811915 CTGACACCGTCCTCGAGATT 59.188 55.000 15.71 0.0 39.71 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 2533 1.060729 TGGTGAGATTTCCCGTTCCA 58.939 50.0 0.00 0.00 0.0 3.53 R
2130 3814 0.171455 GGCAGTACAGAGTGTCTCCG 59.829 60.0 0.00 0.00 0.0 4.63 R
3150 4971 0.038801 GCCTTCTTGCAAGCTTCCAC 60.039 55.0 21.99 5.05 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.382695 GGCAGCTACCCTCCCTACA 60.383 63.158 0.00 0.00 0.00 2.74
48 49 1.569653 ACCCTCCCTACACTACAAGC 58.430 55.000 0.00 0.00 0.00 4.01
71 72 6.491403 AGCATATCTGTTTTGGTGTTCTTCTT 59.509 34.615 0.00 0.00 0.00 2.52
79 80 8.408043 TGTTTTGGTGTTCTTCTTCATGATAT 57.592 30.769 0.00 0.00 0.00 1.63
114 115 2.990740 ACCTTGGCCATGTTTAGGAA 57.009 45.000 24.39 0.00 0.00 3.36
207 208 2.596904 ATCAGTCAAACGTATCCCCG 57.403 50.000 0.00 0.00 0.00 5.73
213 214 2.867975 GTCAAACGTATCCCCGTATTGG 59.132 50.000 0.00 0.00 40.85 3.16
220 221 3.493002 CGTATCCCCGTATTGGCACTTTA 60.493 47.826 0.00 0.00 35.87 1.85
223 224 3.349022 TCCCCGTATTGGCACTTTAAAG 58.651 45.455 13.76 13.76 35.87 1.85
273 274 5.598769 GGCCTAATACCGATACATGTATCC 58.401 45.833 30.97 17.81 38.91 2.59
274 275 5.363005 GGCCTAATACCGATACATGTATCCT 59.637 44.000 30.97 21.64 38.91 3.24
275 276 6.273825 GCCTAATACCGATACATGTATCCTG 58.726 44.000 30.97 25.39 38.91 3.86
276 277 6.127423 GCCTAATACCGATACATGTATCCTGT 60.127 42.308 30.97 28.40 38.91 4.00
284 437 8.429641 ACCGATACATGTATCCTGTATCTTTTT 58.570 33.333 30.97 9.02 46.95 1.94
311 464 5.581085 CCTTCTTAATCACCTACGGTTTGAG 59.419 44.000 0.00 0.00 31.02 3.02
333 486 1.601903 TGCGCACAGTTTTGAACTAGG 59.398 47.619 5.66 0.00 40.46 3.02
353 506 9.457436 AACTAGGTTTGTTTGAGAGTTAGAAAA 57.543 29.630 0.00 0.00 0.00 2.29
882 2227 4.714632 TGGTTTTCCTCTTCAGTAACCTG 58.285 43.478 0.00 0.00 41.38 4.00
894 2239 4.642429 TCAGTAACCTGCTTCTTTCTTCC 58.358 43.478 0.00 0.00 38.66 3.46
896 2241 2.930826 AACCTGCTTCTTTCTTCCGA 57.069 45.000 0.00 0.00 0.00 4.55
897 2242 2.930826 ACCTGCTTCTTTCTTCCGAA 57.069 45.000 0.00 0.00 0.00 4.30
898 2243 3.208747 ACCTGCTTCTTTCTTCCGAAA 57.791 42.857 0.00 0.00 37.55 3.46
933 2278 5.861222 AATGAATTTCGCCCATTTTGTTC 57.139 34.783 0.00 0.00 0.00 3.18
1023 2368 0.322456 CCGGTGGCAAGATCCAGAAA 60.322 55.000 0.00 0.00 36.67 2.52
1170 2527 0.811915 CTGACACCGTCCTCGAGATT 59.188 55.000 15.71 0.00 39.71 2.40
1176 2533 2.427245 CGTCCTCGAGATTGGGCCT 61.427 63.158 15.71 0.00 39.71 5.19
1395 2754 7.094377 GGAAATAATTCAGTGCTAGGTTTGTGA 60.094 37.037 0.00 0.00 37.29 3.58
1430 2789 4.956085 TCTGTTTTCTACTGTGCTTGCTA 58.044 39.130 0.00 0.00 0.00 3.49
1432 2791 5.997746 TCTGTTTTCTACTGTGCTTGCTATT 59.002 36.000 0.00 0.00 0.00 1.73
1433 2792 7.158697 TCTGTTTTCTACTGTGCTTGCTATTA 58.841 34.615 0.00 0.00 0.00 0.98
1434 2793 7.824289 TCTGTTTTCTACTGTGCTTGCTATTAT 59.176 33.333 0.00 0.00 0.00 1.28
1435 2794 7.751732 TGTTTTCTACTGTGCTTGCTATTATG 58.248 34.615 0.00 0.00 0.00 1.90
1437 2796 6.908870 TTCTACTGTGCTTGCTATTATGTG 57.091 37.500 0.00 0.00 0.00 3.21
1438 2797 5.977635 TCTACTGTGCTTGCTATTATGTGT 58.022 37.500 0.00 0.00 0.00 3.72
1440 2799 7.552459 TCTACTGTGCTTGCTATTATGTGTAA 58.448 34.615 0.00 0.00 0.00 2.41
1441 2800 6.422776 ACTGTGCTTGCTATTATGTGTAAC 57.577 37.500 0.00 0.00 37.35 2.50
1443 2802 4.331443 TGTGCTTGCTATTATGTGTAACGG 59.669 41.667 0.00 0.00 42.39 4.44
1444 2803 3.874543 TGCTTGCTATTATGTGTAACGGG 59.125 43.478 0.00 0.00 42.39 5.28
1445 2804 3.875134 GCTTGCTATTATGTGTAACGGGT 59.125 43.478 0.00 0.00 42.39 5.28
1447 2806 5.524646 GCTTGCTATTATGTGTAACGGGTAA 59.475 40.000 0.00 0.00 42.39 2.85
1650 3325 6.761714 AGTTACTAGCCACTGTTGCATATTAC 59.238 38.462 6.63 0.00 0.00 1.89
1744 3419 8.687242 AGAACTAAGATTGTCTTGATACGATGA 58.313 33.333 2.60 0.00 37.29 2.92
1829 3507 5.923733 AAGGTAACAGGTGACTATCAGAG 57.076 43.478 0.00 0.00 40.21 3.35
2121 3805 2.743664 TGAATTCGCCATGAGACTTGTG 59.256 45.455 0.04 0.00 0.00 3.33
2184 3868 0.248661 TGCAGCTCTTATCTCGCGTC 60.249 55.000 5.77 0.00 0.00 5.19
2406 4090 7.375106 AGAGAAGAATTACAAGACAATGCAG 57.625 36.000 0.00 0.00 0.00 4.41
2409 4093 5.536554 AGAATTACAAGACAATGCAGTCG 57.463 39.130 0.00 0.00 43.24 4.18
2418 4102 0.445436 CAATGCAGTCGCTCCAACTC 59.555 55.000 0.00 0.00 39.64 3.01
2432 4116 1.089920 CAACTCGCCCAAGATTCTGG 58.910 55.000 0.00 0.00 36.10 3.86
2458 4142 1.479709 CGAGGAGAAGATGTCACCCT 58.520 55.000 0.00 0.00 37.70 4.34
2487 4171 0.101040 CGTTGCTGGCCAATATGGTG 59.899 55.000 7.01 0.00 40.46 4.17
2526 4210 2.494073 GACCAGTGACGAGAAAGAGGAT 59.506 50.000 0.00 0.00 0.00 3.24
2711 4395 0.527565 CATTTTTCGTGAGGGCCTGG 59.472 55.000 12.95 0.00 0.00 4.45
2894 4584 6.684555 GTCGAATAACTGCAATGAAAGATGTC 59.315 38.462 0.00 0.00 0.00 3.06
2910 4632 3.689649 AGATGTCCAAACGGTTTGATAGC 59.310 43.478 29.82 18.82 43.26 2.97
2914 4636 5.004448 TGTCCAAACGGTTTGATAGCATTA 58.996 37.500 29.82 8.54 43.26 1.90
2915 4637 5.650266 TGTCCAAACGGTTTGATAGCATTAT 59.350 36.000 29.82 0.00 43.26 1.28
2944 4666 0.742281 CTGAGGGTGTGAAGCGGATG 60.742 60.000 0.00 0.00 0.00 3.51
2945 4667 1.296715 GAGGGTGTGAAGCGGATGT 59.703 57.895 0.00 0.00 0.00 3.06
2950 4672 2.159014 GGGTGTGAAGCGGATGTATGTA 60.159 50.000 0.00 0.00 0.00 2.29
3058 4873 4.212425 TCGTTTACTACAATGTTGGCACAG 59.788 41.667 0.00 0.00 42.39 3.66
3070 4885 2.552743 GTTGGCACAGGAAGAGGTAAAC 59.447 50.000 0.00 0.00 42.39 2.01
3084 4899 7.389053 GGAAGAGGTAAACCATCATATCATCAC 59.611 40.741 1.26 0.00 38.89 3.06
3124 4945 9.716531 ATGATGATGTACTCATGTTATACCTTG 57.283 33.333 11.12 0.00 44.83 3.61
3125 4946 8.923270 TGATGATGTACTCATGTTATACCTTGA 58.077 33.333 11.12 0.00 44.83 3.02
3126 4947 9.935241 GATGATGTACTCATGTTATACCTTGAT 57.065 33.333 11.12 0.00 44.83 2.57
3127 4948 9.716531 ATGATGTACTCATGTTATACCTTGATG 57.283 33.333 6.92 0.00 43.15 3.07
3129 4950 9.197694 GATGTACTCATGTTATACCTTGATGTC 57.802 37.037 0.00 0.00 34.06 3.06
3130 4951 7.200455 TGTACTCATGTTATACCTTGATGTCG 58.800 38.462 0.00 0.00 0.00 4.35
3131 4952 5.050490 ACTCATGTTATACCTTGATGTCGC 58.950 41.667 0.00 0.00 0.00 5.19
3135 4956 4.439057 TGTTATACCTTGATGTCGCCTTC 58.561 43.478 0.00 0.00 0.00 3.46
3136 4957 4.161565 TGTTATACCTTGATGTCGCCTTCT 59.838 41.667 0.00 0.00 0.00 2.85
3138 4959 1.813513 ACCTTGATGTCGCCTTCTTG 58.186 50.000 0.00 0.00 0.00 3.02
3139 4960 0.449388 CCTTGATGTCGCCTTCTTGC 59.551 55.000 0.00 0.00 0.00 4.01
3149 4970 1.809684 GCCTTCTTGCGACCTAGTTT 58.190 50.000 0.00 0.00 0.00 2.66
3150 4971 1.464997 GCCTTCTTGCGACCTAGTTTG 59.535 52.381 0.00 0.00 0.00 2.93
3151 4972 2.767505 CCTTCTTGCGACCTAGTTTGT 58.232 47.619 0.00 0.00 0.00 2.83
3152 4973 2.480419 CCTTCTTGCGACCTAGTTTGTG 59.520 50.000 0.00 0.00 0.00 3.33
3153 4974 2.163818 TCTTGCGACCTAGTTTGTGG 57.836 50.000 0.00 0.00 0.00 4.17
3154 4975 1.689813 TCTTGCGACCTAGTTTGTGGA 59.310 47.619 0.00 0.00 0.00 4.02
3155 4976 2.103432 TCTTGCGACCTAGTTTGTGGAA 59.897 45.455 0.00 0.00 0.00 3.53
3156 4977 2.163818 TGCGACCTAGTTTGTGGAAG 57.836 50.000 0.00 0.00 0.00 3.46
3157 4978 0.796927 GCGACCTAGTTTGTGGAAGC 59.203 55.000 0.00 0.00 0.00 3.86
3158 4979 1.608283 GCGACCTAGTTTGTGGAAGCT 60.608 52.381 0.00 0.00 0.00 3.74
3159 4980 2.767505 CGACCTAGTTTGTGGAAGCTT 58.232 47.619 0.00 0.00 0.00 3.74
3160 4981 2.480419 CGACCTAGTTTGTGGAAGCTTG 59.520 50.000 2.10 0.00 0.00 4.01
3161 4982 2.226674 GACCTAGTTTGTGGAAGCTTGC 59.773 50.000 11.58 11.58 0.00 4.01
3162 4983 2.229792 CCTAGTTTGTGGAAGCTTGCA 58.770 47.619 17.55 17.55 0.00 4.08
3163 4984 2.622942 CCTAGTTTGTGGAAGCTTGCAA 59.377 45.455 23.11 12.29 0.00 4.08
3164 4985 2.877043 AGTTTGTGGAAGCTTGCAAG 57.123 45.000 23.11 22.44 0.00 4.01
3165 4986 2.378038 AGTTTGTGGAAGCTTGCAAGA 58.622 42.857 30.39 11.15 0.00 3.02
3166 4987 2.760092 AGTTTGTGGAAGCTTGCAAGAA 59.240 40.909 30.39 16.36 0.00 2.52
3167 4988 3.118542 GTTTGTGGAAGCTTGCAAGAAG 58.881 45.455 30.39 4.88 0.00 2.85
3168 4989 1.321474 TGTGGAAGCTTGCAAGAAGG 58.679 50.000 30.39 4.69 0.00 3.46
3169 4990 0.038801 GTGGAAGCTTGCAAGAAGGC 60.039 55.000 30.39 15.39 0.00 4.35
3170 4991 1.211190 GGAAGCTTGCAAGAAGGCG 59.789 57.895 30.39 3.45 36.28 5.52
3171 4992 1.237285 GGAAGCTTGCAAGAAGGCGA 61.237 55.000 30.39 0.00 36.28 5.54
3172 4993 0.110010 GAAGCTTGCAAGAAGGCGAC 60.110 55.000 30.39 10.15 36.28 5.19
3173 4994 0.819259 AAGCTTGCAAGAAGGCGACA 60.819 50.000 30.39 0.00 36.28 4.35
3174 4995 0.607489 AGCTTGCAAGAAGGCGACAT 60.607 50.000 30.39 0.00 36.28 3.06
3175 4996 0.179179 GCTTGCAAGAAGGCGACATC 60.179 55.000 30.39 4.12 36.28 3.06
3176 4997 1.159285 CTTGCAAGAAGGCGACATCA 58.841 50.000 22.31 0.00 36.28 3.07
3177 4998 1.536766 CTTGCAAGAAGGCGACATCAA 59.463 47.619 22.31 0.00 36.28 2.57
3178 4999 1.159285 TGCAAGAAGGCGACATCAAG 58.841 50.000 0.00 0.00 36.28 3.02
3179 5000 0.449388 GCAAGAAGGCGACATCAAGG 59.551 55.000 0.00 0.00 0.00 3.61
3180 5001 1.813513 CAAGAAGGCGACATCAAGGT 58.186 50.000 0.00 0.00 0.00 3.50
3181 5002 1.734465 CAAGAAGGCGACATCAAGGTC 59.266 52.381 0.00 0.00 34.42 3.85
3182 5003 0.976641 AGAAGGCGACATCAAGGTCA 59.023 50.000 0.00 0.00 37.66 4.02
3198 5019 1.465794 GTCAGACTACTTCCCTCGCT 58.534 55.000 0.00 0.00 0.00 4.93
3234 5055 0.400594 GGAAGTGTACAGCAACCCCT 59.599 55.000 0.00 0.00 0.00 4.79
3247 5068 0.328258 AACCCCTCAAGGATCAACCG 59.672 55.000 0.00 0.00 44.74 4.44
3274 5095 0.466189 AACTGGACAGCCCAACACAG 60.466 55.000 0.00 0.00 46.07 3.66
3275 5096 2.203337 TGGACAGCCCAACACAGC 60.203 61.111 0.00 0.00 43.29 4.40
3276 5097 2.985847 GGACAGCCCAACACAGCC 60.986 66.667 0.00 0.00 34.14 4.85
3277 5098 2.113986 GACAGCCCAACACAGCCT 59.886 61.111 0.00 0.00 0.00 4.58
3278 5099 1.968540 GACAGCCCAACACAGCCTC 60.969 63.158 0.00 0.00 0.00 4.70
3279 5100 2.113774 CAGCCCAACACAGCCTCA 59.886 61.111 0.00 0.00 0.00 3.86
3280 5101 1.970114 CAGCCCAACACAGCCTCAG 60.970 63.158 0.00 0.00 0.00 3.35
3281 5102 2.674380 GCCCAACACAGCCTCAGG 60.674 66.667 0.00 0.00 0.00 3.86
3282 5103 3.160585 CCCAACACAGCCTCAGGA 58.839 61.111 0.00 0.00 0.00 3.86
3283 5104 1.687612 CCCAACACAGCCTCAGGAT 59.312 57.895 0.00 0.00 0.00 3.24
3284 5105 0.038744 CCCAACACAGCCTCAGGATT 59.961 55.000 0.00 0.00 0.00 3.01
3285 5106 1.171308 CCAACACAGCCTCAGGATTG 58.829 55.000 0.00 0.00 0.00 2.67
3286 5107 1.546323 CCAACACAGCCTCAGGATTGT 60.546 52.381 0.00 0.00 0.00 2.71
3287 5108 1.538512 CAACACAGCCTCAGGATTGTG 59.461 52.381 21.30 21.30 41.89 3.33
3288 5109 0.767375 ACACAGCCTCAGGATTGTGT 59.233 50.000 22.36 22.36 43.20 3.72
3289 5110 1.162698 CACAGCCTCAGGATTGTGTG 58.837 55.000 16.83 10.03 36.10 3.82
3290 5111 0.037303 ACAGCCTCAGGATTGTGTGG 59.963 55.000 0.00 0.00 34.71 4.17
3291 5112 0.325933 CAGCCTCAGGATTGTGTGGA 59.674 55.000 0.00 0.00 33.62 4.02
3292 5113 0.326264 AGCCTCAGGATTGTGTGGAC 59.674 55.000 0.00 0.00 33.62 4.02
3293 5114 0.036732 GCCTCAGGATTGTGTGGACA 59.963 55.000 0.00 0.00 33.62 4.02
3294 5115 1.340405 GCCTCAGGATTGTGTGGACAT 60.340 52.381 0.00 0.00 33.62 3.06
3295 5116 2.362736 CCTCAGGATTGTGTGGACATG 58.637 52.381 0.00 0.00 33.62 3.21
3296 5117 2.362736 CTCAGGATTGTGTGGACATGG 58.637 52.381 0.00 0.00 30.13 3.66
3297 5118 0.813184 CAGGATTGTGTGGACATGGC 59.187 55.000 0.00 0.00 30.13 4.40
3298 5119 0.405198 AGGATTGTGTGGACATGGCA 59.595 50.000 0.00 0.00 30.13 4.92
3299 5120 0.813184 GGATTGTGTGGACATGGCAG 59.187 55.000 0.00 0.00 30.13 4.85
3300 5121 1.614051 GGATTGTGTGGACATGGCAGA 60.614 52.381 0.00 0.00 30.13 4.26
3301 5122 2.161855 GATTGTGTGGACATGGCAGAA 58.838 47.619 0.00 0.00 30.13 3.02
3302 5123 1.608055 TTGTGTGGACATGGCAGAAG 58.392 50.000 0.00 0.00 30.13 2.85
3303 5124 0.764271 TGTGTGGACATGGCAGAAGA 59.236 50.000 0.00 0.00 0.00 2.87
3304 5125 1.142667 TGTGTGGACATGGCAGAAGAA 59.857 47.619 0.00 0.00 0.00 2.52
3305 5126 1.808945 GTGTGGACATGGCAGAAGAAG 59.191 52.381 0.00 0.00 0.00 2.85
3306 5127 0.807496 GTGGACATGGCAGAAGAAGC 59.193 55.000 0.00 0.00 0.00 3.86
3307 5128 0.401356 TGGACATGGCAGAAGAAGCA 59.599 50.000 0.00 0.00 0.00 3.91
3308 5129 0.807496 GGACATGGCAGAAGAAGCAC 59.193 55.000 0.00 0.00 0.00 4.40
3309 5130 0.807496 GACATGGCAGAAGAAGCACC 59.193 55.000 0.00 0.00 0.00 5.01
3310 5131 0.957395 ACATGGCAGAAGAAGCACCG 60.957 55.000 0.00 0.00 0.00 4.94
3311 5132 1.377725 ATGGCAGAAGAAGCACCGG 60.378 57.895 0.00 0.00 0.00 5.28
3312 5133 1.841302 ATGGCAGAAGAAGCACCGGA 61.841 55.000 9.46 0.00 0.00 5.14
3313 5134 1.743252 GGCAGAAGAAGCACCGGAG 60.743 63.158 9.46 0.00 0.00 4.63
3314 5135 2.394563 GCAGAAGAAGCACCGGAGC 61.395 63.158 16.88 16.88 0.00 4.70
3315 5136 2.097038 CAGAAGAAGCACCGGAGCG 61.097 63.158 18.47 1.91 40.15 5.03
3333 5154 4.567318 GCTATTGGCCACCTCAGG 57.433 61.111 3.88 0.00 34.27 3.86
3344 5165 3.331478 CCACCTCAGGCTATGATCATC 57.669 52.381 12.53 0.00 37.28 2.92
3345 5166 2.353505 CCACCTCAGGCTATGATCATCG 60.354 54.545 12.53 7.22 37.28 3.84
3346 5167 1.898472 ACCTCAGGCTATGATCATCGG 59.102 52.381 12.53 7.80 37.28 4.18
3347 5168 1.898472 CCTCAGGCTATGATCATCGGT 59.102 52.381 12.53 0.00 37.28 4.69
3348 5169 2.301296 CCTCAGGCTATGATCATCGGTT 59.699 50.000 12.53 0.00 37.28 4.44
3349 5170 3.511540 CCTCAGGCTATGATCATCGGTTA 59.488 47.826 12.53 0.00 37.28 2.85
3350 5171 4.489810 CTCAGGCTATGATCATCGGTTAC 58.510 47.826 12.53 0.00 37.28 2.50
3351 5172 3.895041 TCAGGCTATGATCATCGGTTACA 59.105 43.478 12.53 0.00 31.12 2.41
3352 5173 3.990469 CAGGCTATGATCATCGGTTACAC 59.010 47.826 12.53 0.00 0.00 2.90
3353 5174 3.641436 AGGCTATGATCATCGGTTACACA 59.359 43.478 12.53 0.00 0.00 3.72
3354 5175 4.284490 AGGCTATGATCATCGGTTACACAT 59.716 41.667 12.53 0.00 0.00 3.21
3355 5176 5.480422 AGGCTATGATCATCGGTTACACATA 59.520 40.000 12.53 0.00 0.00 2.29
3356 5177 6.014584 AGGCTATGATCATCGGTTACACATAA 60.015 38.462 12.53 0.00 0.00 1.90
3357 5178 6.818644 GGCTATGATCATCGGTTACACATAAT 59.181 38.462 12.53 0.00 0.00 1.28
3358 5179 7.334421 GGCTATGATCATCGGTTACACATAATT 59.666 37.037 12.53 0.00 0.00 1.40
3359 5180 8.721478 GCTATGATCATCGGTTACACATAATTT 58.279 33.333 12.53 0.00 0.00 1.82
3368 5189 9.649167 ATCGGTTACACATAATTTATACTAGCC 57.351 33.333 0.00 0.00 0.00 3.93
3369 5190 8.640651 TCGGTTACACATAATTTATACTAGCCA 58.359 33.333 0.00 0.00 0.00 4.75
3370 5191 9.263538 CGGTTACACATAATTTATACTAGCCAA 57.736 33.333 0.00 0.00 0.00 4.52
3373 5194 7.745620 ACACATAATTTATACTAGCCAAGCC 57.254 36.000 0.00 0.00 0.00 4.35
3374 5195 6.715264 ACACATAATTTATACTAGCCAAGCCC 59.285 38.462 0.00 0.00 0.00 5.19
3375 5196 5.938125 ACATAATTTATACTAGCCAAGCCCG 59.062 40.000 0.00 0.00 0.00 6.13
3376 5197 2.249844 TTTATACTAGCCAAGCCCGC 57.750 50.000 0.00 0.00 0.00 6.13
3377 5198 0.032952 TTATACTAGCCAAGCCCGCG 59.967 55.000 0.00 0.00 0.00 6.46
3378 5199 2.430382 TATACTAGCCAAGCCCGCGC 62.430 60.000 0.00 0.00 0.00 6.86
3401 5222 2.967076 CACGCCGCGCCTATTGAT 60.967 61.111 13.88 0.00 0.00 2.57
3402 5223 1.663388 CACGCCGCGCCTATTGATA 60.663 57.895 13.88 0.00 0.00 2.15
3403 5224 1.663702 ACGCCGCGCCTATTGATAC 60.664 57.895 13.88 0.00 0.00 2.24
3404 5225 2.716828 CGCCGCGCCTATTGATACG 61.717 63.158 0.00 0.00 0.00 3.06
3405 5226 1.663702 GCCGCGCCTATTGATACGT 60.664 57.895 0.00 0.00 0.00 3.57
3406 5227 1.615107 GCCGCGCCTATTGATACGTC 61.615 60.000 0.00 0.00 0.00 4.34
3407 5228 0.318360 CCGCGCCTATTGATACGTCA 60.318 55.000 0.00 0.00 0.00 4.35
3408 5229 1.668919 CCGCGCCTATTGATACGTCAT 60.669 52.381 0.00 0.00 33.56 3.06
3409 5230 1.386748 CGCGCCTATTGATACGTCATG 59.613 52.381 0.00 0.00 33.56 3.07
3410 5231 2.404215 GCGCCTATTGATACGTCATGT 58.596 47.619 0.00 0.00 33.56 3.21
3411 5232 2.155732 GCGCCTATTGATACGTCATGTG 59.844 50.000 0.00 0.00 33.56 3.21
3412 5233 3.638484 CGCCTATTGATACGTCATGTGA 58.362 45.455 0.00 0.00 33.56 3.58
3413 5234 3.670523 CGCCTATTGATACGTCATGTGAG 59.329 47.826 0.00 0.00 33.56 3.51
3414 5235 4.556699 CGCCTATTGATACGTCATGTGAGA 60.557 45.833 0.00 0.00 33.56 3.27
3415 5236 5.289595 GCCTATTGATACGTCATGTGAGAA 58.710 41.667 0.00 0.00 33.56 2.87
3416 5237 5.753438 GCCTATTGATACGTCATGTGAGAAA 59.247 40.000 0.00 0.00 33.56 2.52
3417 5238 6.425114 GCCTATTGATACGTCATGTGAGAAAT 59.575 38.462 0.00 0.00 33.56 2.17
3418 5239 7.041780 GCCTATTGATACGTCATGTGAGAAATT 60.042 37.037 0.00 0.00 33.56 1.82
3419 5240 8.830580 CCTATTGATACGTCATGTGAGAAATTT 58.169 33.333 0.00 0.00 33.56 1.82
3421 5242 8.900511 ATTGATACGTCATGTGAGAAATTTTG 57.099 30.769 0.00 0.00 33.56 2.44
3422 5243 7.433708 TGATACGTCATGTGAGAAATTTTGT 57.566 32.000 0.00 0.00 0.00 2.83
3423 5244 7.297391 TGATACGTCATGTGAGAAATTTTGTG 58.703 34.615 0.00 0.00 0.00 3.33
3424 5245 5.499139 ACGTCATGTGAGAAATTTTGTGT 57.501 34.783 0.00 0.00 0.00 3.72
3425 5246 6.612247 ACGTCATGTGAGAAATTTTGTGTA 57.388 33.333 0.00 0.00 0.00 2.90
3426 5247 6.427150 ACGTCATGTGAGAAATTTTGTGTAC 58.573 36.000 0.00 0.00 0.00 2.90
3427 5248 6.037720 ACGTCATGTGAGAAATTTTGTGTACA 59.962 34.615 0.00 0.00 0.00 2.90
3428 5249 6.574832 CGTCATGTGAGAAATTTTGTGTACAG 59.425 38.462 0.00 0.00 0.00 2.74
3429 5250 6.360681 GTCATGTGAGAAATTTTGTGTACAGC 59.639 38.462 0.00 0.00 0.00 4.40
3430 5251 4.843147 TGTGAGAAATTTTGTGTACAGCG 58.157 39.130 0.00 0.00 0.00 5.18
3431 5252 4.572795 TGTGAGAAATTTTGTGTACAGCGA 59.427 37.500 0.00 0.00 0.00 4.93
3432 5253 5.238432 TGTGAGAAATTTTGTGTACAGCGAT 59.762 36.000 0.00 0.00 0.00 4.58
3433 5254 6.425417 TGTGAGAAATTTTGTGTACAGCGATA 59.575 34.615 0.00 0.00 0.00 2.92
3434 5255 7.119116 TGTGAGAAATTTTGTGTACAGCGATAT 59.881 33.333 0.00 0.00 0.00 1.63
3435 5256 7.962918 GTGAGAAATTTTGTGTACAGCGATATT 59.037 33.333 0.00 0.00 0.00 1.28
3436 5257 9.157104 TGAGAAATTTTGTGTACAGCGATATTA 57.843 29.630 0.00 0.00 0.00 0.98
3437 5258 9.982291 GAGAAATTTTGTGTACAGCGATATTAA 57.018 29.630 0.00 0.00 0.00 1.40
3486 5307 9.677567 TTAATTATTCAGTTCTTGCTTGTTCAC 57.322 29.630 0.00 0.00 0.00 3.18
3487 5308 6.942532 TTATTCAGTTCTTGCTTGTTCACT 57.057 33.333 0.00 0.00 0.00 3.41
3488 5309 8.621532 ATTATTCAGTTCTTGCTTGTTCACTA 57.378 30.769 0.00 0.00 0.00 2.74
3489 5310 8.621532 TTATTCAGTTCTTGCTTGTTCACTAT 57.378 30.769 0.00 0.00 0.00 2.12
3490 5311 9.719355 TTATTCAGTTCTTGCTTGTTCACTATA 57.281 29.630 0.00 0.00 0.00 1.31
3491 5312 8.798859 ATTCAGTTCTTGCTTGTTCACTATAT 57.201 30.769 0.00 0.00 0.00 0.86
3492 5313 8.621532 TTCAGTTCTTGCTTGTTCACTATATT 57.378 30.769 0.00 0.00 0.00 1.28
3493 5314 8.621532 TCAGTTCTTGCTTGTTCACTATATTT 57.378 30.769 0.00 0.00 0.00 1.40
3494 5315 9.066892 TCAGTTCTTGCTTGTTCACTATATTTT 57.933 29.630 0.00 0.00 0.00 1.82
3495 5316 9.683069 CAGTTCTTGCTTGTTCACTATATTTTT 57.317 29.630 0.00 0.00 0.00 1.94
3530 5351 9.679661 TCTGGTGTATATGTACAAAAATCATGT 57.320 29.630 3.63 0.00 42.18 3.21
3541 5362 9.814899 TGTACAAAAATCATGTTGTTTGAATCT 57.185 25.926 21.19 6.13 38.80 2.40
3579 5400 9.955102 AGGTTCTATTAAATAAAAAGAGACGGT 57.045 29.630 0.00 0.00 0.00 4.83
3588 5409 4.483476 AAAAAGAGACGGTACATTGTGC 57.517 40.909 0.00 0.00 0.00 4.57
3589 5410 2.831685 AAGAGACGGTACATTGTGCA 57.168 45.000 7.21 0.00 0.00 4.57
3590 5411 3.334583 AAGAGACGGTACATTGTGCAT 57.665 42.857 7.21 0.00 0.00 3.96
3591 5412 4.465632 AAGAGACGGTACATTGTGCATA 57.534 40.909 7.21 0.00 0.00 3.14
3592 5413 4.465632 AGAGACGGTACATTGTGCATAA 57.534 40.909 7.21 0.00 0.00 1.90
3593 5414 4.827692 AGAGACGGTACATTGTGCATAAA 58.172 39.130 0.00 0.00 0.00 1.40
3594 5415 5.428253 AGAGACGGTACATTGTGCATAAAT 58.572 37.500 0.00 0.00 0.00 1.40
3595 5416 5.880332 AGAGACGGTACATTGTGCATAAATT 59.120 36.000 0.00 0.00 0.00 1.82
3596 5417 5.879237 AGACGGTACATTGTGCATAAATTG 58.121 37.500 0.00 0.00 0.00 2.32
3597 5418 5.645929 AGACGGTACATTGTGCATAAATTGA 59.354 36.000 0.00 0.00 0.00 2.57
3598 5419 6.150307 AGACGGTACATTGTGCATAAATTGAA 59.850 34.615 0.00 0.00 0.00 2.69
3599 5420 6.862209 ACGGTACATTGTGCATAAATTGAAT 58.138 32.000 0.00 0.00 0.00 2.57
3600 5421 7.990917 ACGGTACATTGTGCATAAATTGAATA 58.009 30.769 0.00 0.00 0.00 1.75
3601 5422 7.913297 ACGGTACATTGTGCATAAATTGAATAC 59.087 33.333 0.00 0.00 0.00 1.89
3602 5423 7.912773 CGGTACATTGTGCATAAATTGAATACA 59.087 33.333 0.00 0.00 0.00 2.29
3603 5424 9.748708 GGTACATTGTGCATAAATTGAATACAT 57.251 29.630 0.00 0.00 0.00 2.29
3606 5427 9.656040 ACATTGTGCATAAATTGAATACATGTT 57.344 25.926 2.30 0.00 0.00 2.71
3607 5428 9.909043 CATTGTGCATAAATTGAATACATGTTG 57.091 29.630 2.30 0.00 0.00 3.33
3608 5429 9.872721 ATTGTGCATAAATTGAATACATGTTGA 57.127 25.926 2.30 0.00 0.00 3.18
3609 5430 9.872721 TTGTGCATAAATTGAATACATGTTGAT 57.127 25.926 2.30 0.00 0.00 2.57
3651 5472 9.906660 TTGATTCTTTGTTAATACACAATGTCC 57.093 29.630 0.00 0.00 36.54 4.02
3652 5473 9.295825 TGATTCTTTGTTAATACACAATGTCCT 57.704 29.630 0.00 0.00 36.54 3.85
3654 5475 9.912634 ATTCTTTGTTAATACACAATGTCCTTG 57.087 29.630 0.00 0.00 36.54 3.61
3656 5477 8.908903 TCTTTGTTAATACACAATGTCCTTGTT 58.091 29.630 0.00 0.00 45.98 2.83
3657 5478 9.528018 CTTTGTTAATACACAATGTCCTTGTTT 57.472 29.630 0.00 0.00 45.98 2.83
3658 5479 8.864069 TTGTTAATACACAATGTCCTTGTTTG 57.136 30.769 0.00 0.00 45.98 2.93
3659 5480 8.226819 TGTTAATACACAATGTCCTTGTTTGA 57.773 30.769 0.00 0.00 45.98 2.69
3660 5481 8.132362 TGTTAATACACAATGTCCTTGTTTGAC 58.868 33.333 0.00 0.00 45.98 3.18
3661 5482 5.705609 ATACACAATGTCCTTGTTTGACC 57.294 39.130 0.00 0.00 45.98 4.02
3662 5483 2.357637 ACACAATGTCCTTGTTTGACCG 59.642 45.455 0.00 0.00 45.98 4.79
3663 5484 1.336755 ACAATGTCCTTGTTTGACCGC 59.663 47.619 0.00 0.00 45.98 5.68
3664 5485 0.958822 AATGTCCTTGTTTGACCGCC 59.041 50.000 0.00 0.00 31.60 6.13
3665 5486 0.110486 ATGTCCTTGTTTGACCGCCT 59.890 50.000 0.00 0.00 31.60 5.52
3666 5487 0.817634 TGTCCTTGTTTGACCGCCTG 60.818 55.000 0.00 0.00 31.60 4.85
3667 5488 1.896660 TCCTTGTTTGACCGCCTGC 60.897 57.895 0.00 0.00 0.00 4.85
3668 5489 1.898574 CCTTGTTTGACCGCCTGCT 60.899 57.895 0.00 0.00 0.00 4.24
3669 5490 1.283793 CTTGTTTGACCGCCTGCTG 59.716 57.895 0.00 0.00 0.00 4.41
3670 5491 2.133742 CTTGTTTGACCGCCTGCTGG 62.134 60.000 5.03 5.03 0.00 4.85
3671 5492 2.281484 GTTTGACCGCCTGCTGGA 60.281 61.111 14.77 0.00 34.57 3.86
3672 5493 1.675641 GTTTGACCGCCTGCTGGAT 60.676 57.895 14.77 0.00 34.57 3.41
3673 5494 1.074775 TTTGACCGCCTGCTGGATT 59.925 52.632 14.77 0.00 34.57 3.01
3674 5495 1.243342 TTTGACCGCCTGCTGGATTG 61.243 55.000 14.77 2.95 34.57 2.67
3675 5496 2.045926 GACCGCCTGCTGGATTGT 60.046 61.111 14.77 6.33 34.57 2.71
3676 5497 2.360350 ACCGCCTGCTGGATTGTG 60.360 61.111 14.77 0.00 34.57 3.33
3677 5498 3.818787 CCGCCTGCTGGATTGTGC 61.819 66.667 14.77 0.00 34.57 4.57
3678 5499 2.749044 CGCCTGCTGGATTGTGCT 60.749 61.111 14.77 0.00 34.57 4.40
3679 5500 2.882876 GCCTGCTGGATTGTGCTG 59.117 61.111 14.77 0.00 34.57 4.41
3680 5501 2.707849 GCCTGCTGGATTGTGCTGG 61.708 63.158 14.77 0.00 46.54 4.85
3681 5502 1.303888 CCTGCTGGATTGTGCTGGT 60.304 57.895 2.92 0.00 41.41 4.00
3682 5503 1.592400 CCTGCTGGATTGTGCTGGTG 61.592 60.000 2.92 0.00 41.41 4.17
3683 5504 0.607217 CTGCTGGATTGTGCTGGTGA 60.607 55.000 0.00 0.00 0.00 4.02
3684 5505 0.038599 TGCTGGATTGTGCTGGTGAT 59.961 50.000 0.00 0.00 0.00 3.06
3685 5506 1.281577 TGCTGGATTGTGCTGGTGATA 59.718 47.619 0.00 0.00 0.00 2.15
3686 5507 2.290832 TGCTGGATTGTGCTGGTGATAA 60.291 45.455 0.00 0.00 0.00 1.75
3687 5508 2.357009 GCTGGATTGTGCTGGTGATAAG 59.643 50.000 0.00 0.00 0.00 1.73
3688 5509 3.877559 CTGGATTGTGCTGGTGATAAGA 58.122 45.455 0.00 0.00 0.00 2.10
3689 5510 4.458397 CTGGATTGTGCTGGTGATAAGAT 58.542 43.478 0.00 0.00 0.00 2.40
3690 5511 4.201657 TGGATTGTGCTGGTGATAAGATG 58.798 43.478 0.00 0.00 0.00 2.90
3691 5512 4.080413 TGGATTGTGCTGGTGATAAGATGA 60.080 41.667 0.00 0.00 0.00 2.92
3692 5513 5.068636 GGATTGTGCTGGTGATAAGATGAT 58.931 41.667 0.00 0.00 0.00 2.45
3693 5514 6.183361 TGGATTGTGCTGGTGATAAGATGATA 60.183 38.462 0.00 0.00 0.00 2.15
3694 5515 6.883217 GGATTGTGCTGGTGATAAGATGATAT 59.117 38.462 0.00 0.00 0.00 1.63
3695 5516 8.043113 GGATTGTGCTGGTGATAAGATGATATA 58.957 37.037 0.00 0.00 0.00 0.86
3696 5517 9.096160 GATTGTGCTGGTGATAAGATGATATAG 57.904 37.037 0.00 0.00 0.00 1.31
3697 5518 7.781324 TGTGCTGGTGATAAGATGATATAGA 57.219 36.000 0.00 0.00 0.00 1.98
3698 5519 7.834803 TGTGCTGGTGATAAGATGATATAGAG 58.165 38.462 0.00 0.00 0.00 2.43
3699 5520 6.756074 GTGCTGGTGATAAGATGATATAGAGC 59.244 42.308 0.00 0.00 0.00 4.09
3700 5521 6.666980 TGCTGGTGATAAGATGATATAGAGCT 59.333 38.462 0.00 0.00 0.00 4.09
3701 5522 7.836183 TGCTGGTGATAAGATGATATAGAGCTA 59.164 37.037 0.00 0.00 0.00 3.32
3702 5523 8.690884 GCTGGTGATAAGATGATATAGAGCTAA 58.309 37.037 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.454859 GTAGCTGCCCATTAGATAGAAATTTAT 57.545 33.333 0.00 0.00 0.00 1.40
5 6 7.883311 GGTAGCTGCCCATTAGATAGAAATTTA 59.117 37.037 10.19 0.00 0.00 1.40
6 7 6.717084 GGTAGCTGCCCATTAGATAGAAATTT 59.283 38.462 10.19 0.00 0.00 1.82
7 8 6.241645 GGTAGCTGCCCATTAGATAGAAATT 58.758 40.000 10.19 0.00 0.00 1.82
8 9 5.810095 GGTAGCTGCCCATTAGATAGAAAT 58.190 41.667 10.19 0.00 0.00 2.17
9 10 5.228945 GGTAGCTGCCCATTAGATAGAAA 57.771 43.478 10.19 0.00 0.00 2.52
10 11 4.891992 GGTAGCTGCCCATTAGATAGAA 57.108 45.455 10.19 0.00 0.00 2.10
22 23 1.382695 TGTAGGGAGGGTAGCTGCC 60.383 63.158 13.24 13.24 0.00 4.85
40 41 6.003950 ACACCAAAACAGATATGCTTGTAGT 58.996 36.000 0.00 0.00 0.00 2.73
48 49 7.874940 TGAAGAAGAACACCAAAACAGATATG 58.125 34.615 0.00 0.00 0.00 1.78
79 80 7.807198 TGGCCAAGGTACAGATTACATATTAA 58.193 34.615 0.61 0.00 0.00 1.40
90 91 2.969821 AAACATGGCCAAGGTACAGA 57.030 45.000 10.96 0.00 0.00 3.41
91 92 3.016736 CCTAAACATGGCCAAGGTACAG 58.983 50.000 10.96 11.46 0.00 2.74
92 93 2.645297 TCCTAAACATGGCCAAGGTACA 59.355 45.455 18.07 7.11 0.00 2.90
93 94 3.359695 TCCTAAACATGGCCAAGGTAC 57.640 47.619 18.07 0.00 0.00 3.34
94 95 4.390129 TTTCCTAAACATGGCCAAGGTA 57.610 40.909 18.07 7.84 0.00 3.08
95 96 2.990740 TTCCTAAACATGGCCAAGGT 57.009 45.000 18.07 13.17 0.00 3.50
96 97 4.615588 TTTTTCCTAAACATGGCCAAGG 57.384 40.909 10.96 12.53 0.00 3.61
190 191 2.945447 TACGGGGATACGTTTGACTG 57.055 50.000 0.00 0.00 46.25 3.51
207 208 7.302524 TCGTCATTTCTTTAAAGTGCCAATAC 58.697 34.615 14.74 5.72 0.00 1.89
213 214 8.355806 CGTAAATTCGTCATTTCTTTAAAGTGC 58.644 33.333 14.74 2.89 36.43 4.40
252 253 7.406031 ACAGGATACATGTATCGGTATTAGG 57.594 40.000 30.32 18.40 42.10 2.69
262 263 9.561069 GGACAAAAAGATACAGGATACATGTAT 57.439 33.333 18.31 18.31 44.52 2.29
263 264 8.768397 AGGACAAAAAGATACAGGATACATGTA 58.232 33.333 8.27 8.27 37.53 2.29
264 265 7.633789 AGGACAAAAAGATACAGGATACATGT 58.366 34.615 2.69 2.69 41.41 3.21
265 266 8.511604 AAGGACAAAAAGATACAGGATACATG 57.488 34.615 0.00 0.00 41.41 3.21
266 267 8.552296 AGAAGGACAAAAAGATACAGGATACAT 58.448 33.333 0.00 0.00 41.41 2.29
267 268 7.918076 AGAAGGACAAAAAGATACAGGATACA 58.082 34.615 0.00 0.00 41.41 2.29
268 269 8.794335 AAGAAGGACAAAAAGATACAGGATAC 57.206 34.615 0.00 0.00 0.00 2.24
270 271 9.981460 ATTAAGAAGGACAAAAAGATACAGGAT 57.019 29.630 0.00 0.00 0.00 3.24
271 272 9.449719 GATTAAGAAGGACAAAAAGATACAGGA 57.550 33.333 0.00 0.00 0.00 3.86
272 273 9.231297 TGATTAAGAAGGACAAAAAGATACAGG 57.769 33.333 0.00 0.00 0.00 4.00
274 275 9.010029 GGTGATTAAGAAGGACAAAAAGATACA 57.990 33.333 0.00 0.00 0.00 2.29
275 276 9.232473 AGGTGATTAAGAAGGACAAAAAGATAC 57.768 33.333 0.00 0.00 0.00 2.24
311 464 1.908065 AGTTCAAAACTGTGCGCAAC 58.092 45.000 14.00 7.43 41.01 4.17
573 1918 2.833943 TCCTGCATGTCAGTATCACTGT 59.166 45.455 13.67 0.00 46.03 3.55
586 1931 6.978343 ATCAAACAAAAATGATCCTGCATG 57.022 33.333 0.00 0.00 30.62 4.06
913 2258 3.312828 CGAACAAAATGGGCGAAATTCA 58.687 40.909 0.00 0.00 0.00 2.57
914 2259 2.666022 CCGAACAAAATGGGCGAAATTC 59.334 45.455 0.00 0.00 0.00 2.17
921 2266 1.589630 GGTCCCGAACAAAATGGGC 59.410 57.895 0.00 0.00 42.98 5.36
1170 2527 2.493273 GATTTCCCGTTCCAGGCCCA 62.493 60.000 0.00 0.00 0.00 5.36
1176 2533 1.060729 TGGTGAGATTTCCCGTTCCA 58.939 50.000 0.00 0.00 0.00 3.53
1395 2754 4.330250 AGAAAACAGATACAGCAGCACAT 58.670 39.130 0.00 0.00 0.00 3.21
1430 2789 7.332557 TCAATGAGTTACCCGTTACACATAAT 58.667 34.615 0.00 0.00 0.00 1.28
1432 2791 6.283544 TCAATGAGTTACCCGTTACACATA 57.716 37.500 0.00 0.00 0.00 2.29
1433 2792 5.155278 TCAATGAGTTACCCGTTACACAT 57.845 39.130 0.00 0.00 0.00 3.21
1434 2793 4.562082 CTCAATGAGTTACCCGTTACACA 58.438 43.478 1.31 0.00 0.00 3.72
1435 2794 3.370061 GCTCAATGAGTTACCCGTTACAC 59.630 47.826 12.29 0.00 31.39 2.90
1437 2796 3.617263 CAGCTCAATGAGTTACCCGTTAC 59.383 47.826 12.29 0.00 31.39 2.50
1438 2797 3.512329 TCAGCTCAATGAGTTACCCGTTA 59.488 43.478 12.29 0.00 31.39 3.18
1440 2799 1.899814 TCAGCTCAATGAGTTACCCGT 59.100 47.619 12.29 0.00 31.39 5.28
1441 2800 2.672961 TCAGCTCAATGAGTTACCCG 57.327 50.000 12.29 0.00 31.39 5.28
1443 2802 8.768955 CATAATAGTTCAGCTCAATGAGTTACC 58.231 37.037 12.29 0.00 31.39 2.85
1444 2803 9.319143 ACATAATAGTTCAGCTCAATGAGTTAC 57.681 33.333 12.29 2.15 31.39 2.50
1445 2804 9.317936 CACATAATAGTTCAGCTCAATGAGTTA 57.682 33.333 12.29 0.59 31.39 2.24
1447 2806 7.334090 ACACATAATAGTTCAGCTCAATGAGT 58.666 34.615 12.29 0.00 31.39 3.41
1634 3300 5.878332 TTCACAGTAATATGCAACAGTGG 57.122 39.130 10.68 0.00 34.82 4.00
1650 3325 8.946085 ACAGTATTGTGGTACAATTATTCACAG 58.054 33.333 11.88 4.56 45.80 3.66
1665 3340 5.464722 GCTGATCAGTCATACAGTATTGTGG 59.535 44.000 23.38 0.00 38.23 4.17
1808 3484 4.282496 CCTCTGATAGTCACCTGTTACCT 58.718 47.826 0.00 0.00 0.00 3.08
1829 3507 4.681074 TGTTTTTCATTTTGTCTCCCCC 57.319 40.909 0.00 0.00 0.00 5.40
1862 3541 5.551305 TGATGAAAGAGAGTGGACTTGAA 57.449 39.130 0.00 0.00 0.00 2.69
1930 3609 6.014327 ACCTGCATTATGGTTCACAAGAAAAT 60.014 34.615 0.00 0.00 35.08 1.82
1932 3614 4.832266 ACCTGCATTATGGTTCACAAGAAA 59.168 37.500 0.00 0.00 35.08 2.52
2130 3814 0.171455 GGCAGTACAGAGTGTCTCCG 59.829 60.000 0.00 0.00 0.00 4.63
2184 3868 2.082231 CCAACCTTCAGCAGATGTGAG 58.918 52.381 0.00 0.00 0.00 3.51
2406 4090 3.876589 TTGGGCGAGTTGGAGCGAC 62.877 63.158 0.00 0.00 34.04 5.19
2409 4093 0.678048 AATCTTGGGCGAGTTGGAGC 60.678 55.000 0.00 0.00 0.00 4.70
2418 4102 1.369091 CCGTTCCAGAATCTTGGGCG 61.369 60.000 0.24 5.03 38.81 6.13
2432 4116 0.528684 CATCTTCTCCTCGCCCGTTC 60.529 60.000 0.00 0.00 0.00 3.95
2458 4142 1.803922 CCAGCAACGCGACATCGTA 60.804 57.895 15.93 0.00 42.46 3.43
2487 4171 0.689080 TCTCCATGCTCAGGTCCTCC 60.689 60.000 0.00 0.00 0.00 4.30
2526 4210 3.878699 CGTCATCCATTTCCATGTCATCA 59.121 43.478 0.00 0.00 0.00 3.07
2711 4395 2.545731 GTCTCAAGCTAGCTGGCTAAC 58.454 52.381 26.06 16.36 42.24 2.34
2810 4497 4.926860 TGTTTCAGAGCACAATATCACG 57.073 40.909 0.00 0.00 0.00 4.35
2925 4647 0.742281 CATCCGCTTCACACCCTCAG 60.742 60.000 0.00 0.00 0.00 3.35
2944 4666 5.925969 AGCAGGCAAAACAAACAATACATAC 59.074 36.000 0.00 0.00 0.00 2.39
2945 4667 6.095432 AGCAGGCAAAACAAACAATACATA 57.905 33.333 0.00 0.00 0.00 2.29
2950 4672 3.540314 TGAGCAGGCAAAACAAACAAT 57.460 38.095 0.00 0.00 0.00 2.71
3058 4873 7.389053 GTGATGATATGATGGTTTACCTCTTCC 59.611 40.741 0.00 0.00 36.82 3.46
3070 4885 9.623000 ACATAATATGTGGTGATGATATGATGG 57.377 33.333 4.93 0.00 43.01 3.51
3111 4932 4.380531 AGGCGACATCAAGGTATAACATG 58.619 43.478 0.00 0.00 0.00 3.21
3116 4937 4.693283 CAAGAAGGCGACATCAAGGTATA 58.307 43.478 0.00 0.00 0.00 1.47
3121 4942 3.984292 GCAAGAAGGCGACATCAAG 57.016 52.632 0.00 0.00 0.00 3.02
3135 4956 2.163818 TCCACAAACTAGGTCGCAAG 57.836 50.000 0.00 0.00 0.00 4.01
3136 4957 2.489971 CTTCCACAAACTAGGTCGCAA 58.510 47.619 0.00 0.00 0.00 4.85
3138 4959 0.796927 GCTTCCACAAACTAGGTCGC 59.203 55.000 0.00 0.00 0.00 5.19
3139 4960 2.457366 AGCTTCCACAAACTAGGTCG 57.543 50.000 0.00 0.00 0.00 4.79
3140 4961 2.226674 GCAAGCTTCCACAAACTAGGTC 59.773 50.000 0.00 0.00 0.00 3.85
3141 4962 2.230660 GCAAGCTTCCACAAACTAGGT 58.769 47.619 0.00 0.00 0.00 3.08
3143 4964 3.565482 TCTTGCAAGCTTCCACAAACTAG 59.435 43.478 21.99 0.00 0.00 2.57
3144 4965 3.550820 TCTTGCAAGCTTCCACAAACTA 58.449 40.909 21.99 0.00 0.00 2.24
3146 4967 2.869233 TCTTGCAAGCTTCCACAAAC 57.131 45.000 21.99 0.00 0.00 2.93
3147 4968 2.101249 CCTTCTTGCAAGCTTCCACAAA 59.899 45.455 21.99 7.14 0.00 2.83
3149 4970 1.321474 CCTTCTTGCAAGCTTCCACA 58.679 50.000 21.99 0.00 0.00 4.17
3150 4971 0.038801 GCCTTCTTGCAAGCTTCCAC 60.039 55.000 21.99 5.05 0.00 4.02
3151 4972 1.518056 CGCCTTCTTGCAAGCTTCCA 61.518 55.000 21.99 0.56 0.00 3.53
3152 4973 1.211190 CGCCTTCTTGCAAGCTTCC 59.789 57.895 21.99 8.94 0.00 3.46
3153 4974 0.110010 GTCGCCTTCTTGCAAGCTTC 60.110 55.000 21.99 9.27 0.00 3.86
3154 4975 0.819259 TGTCGCCTTCTTGCAAGCTT 60.819 50.000 21.99 0.00 0.00 3.74
3155 4976 0.607489 ATGTCGCCTTCTTGCAAGCT 60.607 50.000 21.99 0.00 0.00 3.74
3156 4977 0.179179 GATGTCGCCTTCTTGCAAGC 60.179 55.000 21.99 9.96 0.00 4.01
3157 4978 1.159285 TGATGTCGCCTTCTTGCAAG 58.841 50.000 20.81 20.81 0.00 4.01
3158 4979 1.536766 CTTGATGTCGCCTTCTTGCAA 59.463 47.619 0.00 0.00 0.00 4.08
3159 4980 1.159285 CTTGATGTCGCCTTCTTGCA 58.841 50.000 0.00 0.00 0.00 4.08
3160 4981 0.449388 CCTTGATGTCGCCTTCTTGC 59.551 55.000 0.00 0.00 0.00 4.01
3161 4982 1.734465 GACCTTGATGTCGCCTTCTTG 59.266 52.381 0.00 0.00 0.00 3.02
3162 4983 1.347707 TGACCTTGATGTCGCCTTCTT 59.652 47.619 0.00 0.00 38.11 2.52
3163 4984 0.976641 TGACCTTGATGTCGCCTTCT 59.023 50.000 0.00 0.00 38.11 2.85
3164 4985 1.066858 TCTGACCTTGATGTCGCCTTC 60.067 52.381 0.00 0.00 38.11 3.46
3165 4986 0.976641 TCTGACCTTGATGTCGCCTT 59.023 50.000 0.00 0.00 38.11 4.35
3166 4987 0.247736 GTCTGACCTTGATGTCGCCT 59.752 55.000 0.00 0.00 38.11 5.52
3167 4988 0.247736 AGTCTGACCTTGATGTCGCC 59.752 55.000 3.76 0.00 38.11 5.54
3168 4989 2.164624 AGTAGTCTGACCTTGATGTCGC 59.835 50.000 3.76 0.00 38.11 5.19
3169 4990 4.416620 GAAGTAGTCTGACCTTGATGTCG 58.583 47.826 3.76 0.00 38.11 4.35
3170 4991 4.382147 GGGAAGTAGTCTGACCTTGATGTC 60.382 50.000 3.76 0.00 35.77 3.06
3171 4992 3.515901 GGGAAGTAGTCTGACCTTGATGT 59.484 47.826 3.76 0.00 0.00 3.06
3172 4993 3.772025 AGGGAAGTAGTCTGACCTTGATG 59.228 47.826 3.76 0.00 29.96 3.07
3173 4994 4.027437 GAGGGAAGTAGTCTGACCTTGAT 58.973 47.826 3.76 0.00 32.97 2.57
3174 4995 3.432378 GAGGGAAGTAGTCTGACCTTGA 58.568 50.000 3.76 0.00 32.97 3.02
3175 4996 2.164624 CGAGGGAAGTAGTCTGACCTTG 59.835 54.545 3.76 0.00 32.97 3.61
3176 4997 2.448453 CGAGGGAAGTAGTCTGACCTT 58.552 52.381 3.76 1.53 32.97 3.50
3177 4998 1.956159 GCGAGGGAAGTAGTCTGACCT 60.956 57.143 3.76 0.00 34.67 3.85
3178 4999 0.456628 GCGAGGGAAGTAGTCTGACC 59.543 60.000 3.76 0.00 0.00 4.02
3179 5000 1.133407 CAGCGAGGGAAGTAGTCTGAC 59.867 57.143 0.00 0.00 0.00 3.51
3180 5001 1.464734 CAGCGAGGGAAGTAGTCTGA 58.535 55.000 0.00 0.00 0.00 3.27
3181 5002 0.179124 GCAGCGAGGGAAGTAGTCTG 60.179 60.000 0.00 0.00 0.00 3.51
3182 5003 1.324005 GGCAGCGAGGGAAGTAGTCT 61.324 60.000 0.00 0.00 0.00 3.24
3198 5019 2.421314 CGCATAGTCATCGGGGCA 59.579 61.111 0.00 0.00 0.00 5.36
3205 5026 3.738281 GCTGTACACTTCCGCATAGTCAT 60.738 47.826 0.00 0.00 0.00 3.06
3234 5055 0.320374 AGTTCGCGGTTGATCCTTGA 59.680 50.000 6.13 0.00 0.00 3.02
3247 5068 0.796927 GGCTGTCCAGTTTAGTTCGC 59.203 55.000 0.00 0.00 0.00 4.70
3274 5095 0.036732 TGTCCACACAATCCTGAGGC 59.963 55.000 0.00 0.00 0.00 4.70
3275 5096 2.362736 CATGTCCACACAATCCTGAGG 58.637 52.381 0.00 0.00 35.64 3.86
3276 5097 2.362736 CCATGTCCACACAATCCTGAG 58.637 52.381 0.00 0.00 35.64 3.35
3277 5098 1.614051 GCCATGTCCACACAATCCTGA 60.614 52.381 0.00 0.00 35.64 3.86
3278 5099 0.813184 GCCATGTCCACACAATCCTG 59.187 55.000 0.00 0.00 35.64 3.86
3279 5100 0.405198 TGCCATGTCCACACAATCCT 59.595 50.000 0.00 0.00 35.64 3.24
3280 5101 0.813184 CTGCCATGTCCACACAATCC 59.187 55.000 0.00 0.00 35.64 3.01
3281 5102 1.825090 TCTGCCATGTCCACACAATC 58.175 50.000 0.00 0.00 35.64 2.67
3282 5103 2.165167 CTTCTGCCATGTCCACACAAT 58.835 47.619 0.00 0.00 35.64 2.71
3283 5104 1.142667 TCTTCTGCCATGTCCACACAA 59.857 47.619 0.00 0.00 35.64 3.33
3284 5105 0.764271 TCTTCTGCCATGTCCACACA 59.236 50.000 0.00 0.00 36.78 3.72
3285 5106 1.808945 CTTCTTCTGCCATGTCCACAC 59.191 52.381 0.00 0.00 0.00 3.82
3286 5107 1.883638 GCTTCTTCTGCCATGTCCACA 60.884 52.381 0.00 0.00 0.00 4.17
3287 5108 0.807496 GCTTCTTCTGCCATGTCCAC 59.193 55.000 0.00 0.00 0.00 4.02
3288 5109 0.401356 TGCTTCTTCTGCCATGTCCA 59.599 50.000 0.00 0.00 0.00 4.02
3289 5110 0.807496 GTGCTTCTTCTGCCATGTCC 59.193 55.000 0.00 0.00 0.00 4.02
3290 5111 0.807496 GGTGCTTCTTCTGCCATGTC 59.193 55.000 0.00 0.00 0.00 3.06
3291 5112 0.957395 CGGTGCTTCTTCTGCCATGT 60.957 55.000 0.00 0.00 0.00 3.21
3292 5113 1.651240 CCGGTGCTTCTTCTGCCATG 61.651 60.000 0.00 0.00 0.00 3.66
3293 5114 1.377725 CCGGTGCTTCTTCTGCCAT 60.378 57.895 0.00 0.00 0.00 4.40
3294 5115 2.032528 CCGGTGCTTCTTCTGCCA 59.967 61.111 0.00 0.00 0.00 4.92
3295 5116 1.743252 CTCCGGTGCTTCTTCTGCC 60.743 63.158 0.00 0.00 0.00 4.85
3296 5117 2.394563 GCTCCGGTGCTTCTTCTGC 61.395 63.158 20.97 0.00 0.00 4.26
3297 5118 2.097038 CGCTCCGGTGCTTCTTCTG 61.097 63.158 24.75 5.02 0.00 3.02
3298 5119 2.262915 CGCTCCGGTGCTTCTTCT 59.737 61.111 24.75 0.00 0.00 2.85
3299 5120 2.815647 CCGCTCCGGTGCTTCTTC 60.816 66.667 24.75 0.00 42.73 2.87
3316 5137 1.825622 GCCTGAGGTGGCCAATAGC 60.826 63.158 7.24 0.61 46.82 2.97
3317 5138 4.567318 GCCTGAGGTGGCCAATAG 57.433 61.111 7.24 3.16 46.82 1.73
3324 5145 2.353505 CGATGATCATAGCCTGAGGTGG 60.354 54.545 8.54 0.00 37.28 4.61
3325 5146 2.353505 CCGATGATCATAGCCTGAGGTG 60.354 54.545 8.54 0.00 37.28 4.00
3326 5147 1.898472 CCGATGATCATAGCCTGAGGT 59.102 52.381 8.54 0.00 37.28 3.85
3327 5148 1.898472 ACCGATGATCATAGCCTGAGG 59.102 52.381 8.54 0.00 37.28 3.86
3328 5149 3.674528 AACCGATGATCATAGCCTGAG 57.325 47.619 8.54 0.00 37.28 3.35
3329 5150 3.895041 TGTAACCGATGATCATAGCCTGA 59.105 43.478 8.54 0.00 38.53 3.86
3330 5151 3.990469 GTGTAACCGATGATCATAGCCTG 59.010 47.826 8.54 0.00 0.00 4.85
3331 5152 3.641436 TGTGTAACCGATGATCATAGCCT 59.359 43.478 8.54 0.95 34.36 4.58
3332 5153 3.990092 TGTGTAACCGATGATCATAGCC 58.010 45.455 8.54 0.00 34.36 3.93
3333 5154 7.834068 ATTATGTGTAACCGATGATCATAGC 57.166 36.000 8.54 0.00 34.36 2.97
3342 5163 9.649167 GGCTAGTATAAATTATGTGTAACCGAT 57.351 33.333 0.00 0.00 34.36 4.18
3343 5164 8.640651 TGGCTAGTATAAATTATGTGTAACCGA 58.359 33.333 0.00 0.00 34.36 4.69
3344 5165 8.821147 TGGCTAGTATAAATTATGTGTAACCG 57.179 34.615 0.00 0.00 34.36 4.44
3347 5168 9.280174 GGCTTGGCTAGTATAAATTATGTGTAA 57.720 33.333 0.00 0.00 0.00 2.41
3348 5169 7.881232 GGGCTTGGCTAGTATAAATTATGTGTA 59.119 37.037 0.00 0.00 0.00 2.90
3349 5170 6.715264 GGGCTTGGCTAGTATAAATTATGTGT 59.285 38.462 0.00 0.00 0.00 3.72
3350 5171 6.128282 CGGGCTTGGCTAGTATAAATTATGTG 60.128 42.308 0.00 0.00 0.00 3.21
3351 5172 5.938125 CGGGCTTGGCTAGTATAAATTATGT 59.062 40.000 0.00 0.00 0.00 2.29
3352 5173 5.163754 GCGGGCTTGGCTAGTATAAATTATG 60.164 44.000 0.00 0.00 0.00 1.90
3353 5174 4.941873 GCGGGCTTGGCTAGTATAAATTAT 59.058 41.667 0.00 0.00 0.00 1.28
3354 5175 4.320870 GCGGGCTTGGCTAGTATAAATTA 58.679 43.478 0.00 0.00 0.00 1.40
3355 5176 3.146847 GCGGGCTTGGCTAGTATAAATT 58.853 45.455 0.00 0.00 0.00 1.82
3356 5177 2.779506 GCGGGCTTGGCTAGTATAAAT 58.220 47.619 0.00 0.00 0.00 1.40
3357 5178 1.539496 CGCGGGCTTGGCTAGTATAAA 60.539 52.381 0.00 0.00 0.00 1.40
3358 5179 0.032952 CGCGGGCTTGGCTAGTATAA 59.967 55.000 0.00 0.00 0.00 0.98
3359 5180 1.663739 CGCGGGCTTGGCTAGTATA 59.336 57.895 0.00 0.00 0.00 1.47
3360 5181 2.421739 CGCGGGCTTGGCTAGTAT 59.578 61.111 0.00 0.00 0.00 2.12
3361 5182 4.524318 GCGCGGGCTTGGCTAGTA 62.524 66.667 18.33 0.00 35.83 1.82
3384 5205 1.663388 TATCAATAGGCGCGGCGTG 60.663 57.895 27.74 24.36 0.00 5.34
3385 5206 1.663702 GTATCAATAGGCGCGGCGT 60.664 57.895 27.74 17.34 0.00 5.68
3386 5207 2.716828 CGTATCAATAGGCGCGGCG 61.717 63.158 27.74 19.62 0.00 6.46
3387 5208 1.615107 GACGTATCAATAGGCGCGGC 61.615 60.000 27.06 27.06 0.00 6.53
3388 5209 0.318360 TGACGTATCAATAGGCGCGG 60.318 55.000 8.83 0.00 0.00 6.46
3389 5210 1.386748 CATGACGTATCAATAGGCGCG 59.613 52.381 0.00 0.00 38.69 6.86
3390 5211 2.155732 CACATGACGTATCAATAGGCGC 59.844 50.000 0.00 0.00 38.69 6.53
3391 5212 3.638484 TCACATGACGTATCAATAGGCG 58.362 45.455 0.00 0.00 38.69 5.52
3392 5213 4.871513 TCTCACATGACGTATCAATAGGC 58.128 43.478 0.00 0.00 38.69 3.93
3393 5214 7.953158 ATTTCTCACATGACGTATCAATAGG 57.047 36.000 0.00 0.00 38.69 2.57
3395 5216 9.986833 CAAAATTTCTCACATGACGTATCAATA 57.013 29.630 0.00 0.00 38.69 1.90
3396 5217 8.514594 ACAAAATTTCTCACATGACGTATCAAT 58.485 29.630 0.00 0.00 38.69 2.57
3397 5218 7.802720 CACAAAATTTCTCACATGACGTATCAA 59.197 33.333 0.00 0.00 38.69 2.57
3398 5219 7.041440 ACACAAAATTTCTCACATGACGTATCA 60.041 33.333 0.00 0.00 39.83 2.15
3399 5220 7.298122 ACACAAAATTTCTCACATGACGTATC 58.702 34.615 0.00 0.00 0.00 2.24
3400 5221 7.202016 ACACAAAATTTCTCACATGACGTAT 57.798 32.000 0.00 0.00 0.00 3.06
3401 5222 6.612247 ACACAAAATTTCTCACATGACGTA 57.388 33.333 0.00 0.00 0.00 3.57
3402 5223 5.499139 ACACAAAATTTCTCACATGACGT 57.501 34.783 0.00 0.00 0.00 4.34
3403 5224 6.426327 TGTACACAAAATTTCTCACATGACG 58.574 36.000 0.00 0.00 0.00 4.35
3404 5225 6.360681 GCTGTACACAAAATTTCTCACATGAC 59.639 38.462 0.00 0.00 0.00 3.06
3405 5226 6.437928 GCTGTACACAAAATTTCTCACATGA 58.562 36.000 0.00 0.00 0.00 3.07
3406 5227 5.340403 CGCTGTACACAAAATTTCTCACATG 59.660 40.000 0.00 0.00 0.00 3.21
3407 5228 5.238432 TCGCTGTACACAAAATTTCTCACAT 59.762 36.000 0.00 0.00 0.00 3.21
3408 5229 4.572795 TCGCTGTACACAAAATTTCTCACA 59.427 37.500 0.00 0.00 0.00 3.58
3409 5230 5.090652 TCGCTGTACACAAAATTTCTCAC 57.909 39.130 0.00 0.00 0.00 3.51
3410 5231 5.940192 ATCGCTGTACACAAAATTTCTCA 57.060 34.783 0.00 0.00 0.00 3.27
3411 5232 9.982291 TTAATATCGCTGTACACAAAATTTCTC 57.018 29.630 0.00 0.00 0.00 2.87
3460 5281 9.677567 GTGAACAAGCAAGAACTGAATAATTAA 57.322 29.630 0.00 0.00 0.00 1.40
3461 5282 9.066892 AGTGAACAAGCAAGAACTGAATAATTA 57.933 29.630 0.00 0.00 0.00 1.40
3462 5283 7.945134 AGTGAACAAGCAAGAACTGAATAATT 58.055 30.769 0.00 0.00 0.00 1.40
3463 5284 7.516198 AGTGAACAAGCAAGAACTGAATAAT 57.484 32.000 0.00 0.00 0.00 1.28
3464 5285 6.942532 AGTGAACAAGCAAGAACTGAATAA 57.057 33.333 0.00 0.00 0.00 1.40
3465 5286 9.890629 ATATAGTGAACAAGCAAGAACTGAATA 57.109 29.630 0.00 0.00 0.00 1.75
3466 5287 8.798859 ATATAGTGAACAAGCAAGAACTGAAT 57.201 30.769 0.00 0.00 0.00 2.57
3467 5288 8.621532 AATATAGTGAACAAGCAAGAACTGAA 57.378 30.769 0.00 0.00 0.00 3.02
3468 5289 8.621532 AAATATAGTGAACAAGCAAGAACTGA 57.378 30.769 0.00 0.00 0.00 3.41
3469 5290 9.683069 AAAAATATAGTGAACAAGCAAGAACTG 57.317 29.630 0.00 0.00 0.00 3.16
3504 5325 9.679661 ACATGATTTTTGTACATATACACCAGA 57.320 29.630 0.00 0.00 41.12 3.86
3515 5336 9.814899 AGATTCAAACAACATGATTTTTGTACA 57.185 25.926 12.55 0.00 34.82 2.90
3553 5374 9.955102 ACCGTCTCTTTTTATTTAATAGAACCT 57.045 29.630 0.00 0.00 0.00 3.50
3562 5383 8.231837 GCACAATGTACCGTCTCTTTTTATTTA 58.768 33.333 0.00 0.00 0.00 1.40
3563 5384 7.081976 GCACAATGTACCGTCTCTTTTTATTT 58.918 34.615 0.00 0.00 0.00 1.40
3564 5385 6.205853 TGCACAATGTACCGTCTCTTTTTATT 59.794 34.615 0.00 0.00 0.00 1.40
3565 5386 5.703592 TGCACAATGTACCGTCTCTTTTTAT 59.296 36.000 0.00 0.00 0.00 1.40
3566 5387 5.057819 TGCACAATGTACCGTCTCTTTTTA 58.942 37.500 0.00 0.00 0.00 1.52
3567 5388 3.880490 TGCACAATGTACCGTCTCTTTTT 59.120 39.130 0.00 0.00 0.00 1.94
3568 5389 3.472652 TGCACAATGTACCGTCTCTTTT 58.527 40.909 0.00 0.00 0.00 2.27
3569 5390 3.120321 TGCACAATGTACCGTCTCTTT 57.880 42.857 0.00 0.00 0.00 2.52
3570 5391 2.831685 TGCACAATGTACCGTCTCTT 57.168 45.000 0.00 0.00 0.00 2.85
3571 5392 4.465632 TTATGCACAATGTACCGTCTCT 57.534 40.909 0.00 0.00 0.00 3.10
3572 5393 5.734855 ATTTATGCACAATGTACCGTCTC 57.265 39.130 0.00 0.00 0.00 3.36
3573 5394 5.645929 TCAATTTATGCACAATGTACCGTCT 59.354 36.000 0.00 0.00 0.00 4.18
3574 5395 5.874831 TCAATTTATGCACAATGTACCGTC 58.125 37.500 0.00 0.00 0.00 4.79
3575 5396 5.888691 TCAATTTATGCACAATGTACCGT 57.111 34.783 0.00 0.00 0.00 4.83
3576 5397 7.912773 TGTATTCAATTTATGCACAATGTACCG 59.087 33.333 0.00 0.00 0.00 4.02
3577 5398 9.748708 ATGTATTCAATTTATGCACAATGTACC 57.251 29.630 0.00 0.00 0.00 3.34
3580 5401 9.656040 AACATGTATTCAATTTATGCACAATGT 57.344 25.926 0.00 0.00 0.00 2.71
3581 5402 9.909043 CAACATGTATTCAATTTATGCACAATG 57.091 29.630 0.00 0.00 0.00 2.82
3582 5403 9.872721 TCAACATGTATTCAATTTATGCACAAT 57.127 25.926 0.00 0.00 0.00 2.71
3583 5404 9.872721 ATCAACATGTATTCAATTTATGCACAA 57.127 25.926 0.00 0.00 0.00 3.33
3625 5446 9.906660 GGACATTGTGTATTAACAAAGAATCAA 57.093 29.630 0.00 0.00 42.98 2.57
3626 5447 9.295825 AGGACATTGTGTATTAACAAAGAATCA 57.704 29.630 0.00 0.00 42.98 2.57
3628 5449 9.912634 CAAGGACATTGTGTATTAACAAAGAAT 57.087 29.630 0.00 0.00 42.98 2.40
3644 5465 1.335872 GGCGGTCAAACAAGGACATTG 60.336 52.381 0.00 0.00 45.01 2.82
3645 5466 0.958822 GGCGGTCAAACAAGGACATT 59.041 50.000 0.00 0.00 37.00 2.71
3646 5467 0.110486 AGGCGGTCAAACAAGGACAT 59.890 50.000 0.00 0.00 37.00 3.06
3647 5468 0.817634 CAGGCGGTCAAACAAGGACA 60.818 55.000 0.00 0.00 37.00 4.02
3648 5469 1.949257 CAGGCGGTCAAACAAGGAC 59.051 57.895 0.00 0.00 34.52 3.85
3649 5470 1.896660 GCAGGCGGTCAAACAAGGA 60.897 57.895 0.00 0.00 0.00 3.36
3650 5471 1.898574 AGCAGGCGGTCAAACAAGG 60.899 57.895 0.00 0.00 0.00 3.61
3651 5472 1.283793 CAGCAGGCGGTCAAACAAG 59.716 57.895 0.00 0.00 0.00 3.16
3652 5473 2.192861 CCAGCAGGCGGTCAAACAA 61.193 57.895 0.00 0.00 0.00 2.83
3653 5474 2.410322 ATCCAGCAGGCGGTCAAACA 62.410 55.000 0.00 0.00 33.74 2.83
3654 5475 1.244019 AATCCAGCAGGCGGTCAAAC 61.244 55.000 0.00 0.00 33.74 2.93
3655 5476 1.074775 AATCCAGCAGGCGGTCAAA 59.925 52.632 0.00 0.00 33.74 2.69
3656 5477 1.675310 CAATCCAGCAGGCGGTCAA 60.675 57.895 0.00 0.00 33.74 3.18
3657 5478 2.046023 CAATCCAGCAGGCGGTCA 60.046 61.111 0.00 0.00 33.74 4.02
3658 5479 2.045926 ACAATCCAGCAGGCGGTC 60.046 61.111 0.00 0.00 33.74 4.79
3659 5480 2.360350 CACAATCCAGCAGGCGGT 60.360 61.111 0.00 0.00 33.74 5.68
3660 5481 3.818787 GCACAATCCAGCAGGCGG 61.819 66.667 0.00 0.00 33.74 6.13
3661 5482 2.749044 AGCACAATCCAGCAGGCG 60.749 61.111 0.00 0.00 33.74 5.52
3662 5483 2.707849 CCAGCACAATCCAGCAGGC 61.708 63.158 0.00 0.00 30.54 4.85
3663 5484 1.303888 ACCAGCACAATCCAGCAGG 60.304 57.895 0.00 0.00 42.45 4.85
3664 5485 0.607217 TCACCAGCACAATCCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3665 5486 0.038599 ATCACCAGCACAATCCAGCA 59.961 50.000 0.00 0.00 0.00 4.41
3666 5487 2.042686 TATCACCAGCACAATCCAGC 57.957 50.000 0.00 0.00 0.00 4.85
3667 5488 3.877559 TCTTATCACCAGCACAATCCAG 58.122 45.455 0.00 0.00 0.00 3.86
3668 5489 3.998913 TCTTATCACCAGCACAATCCA 57.001 42.857 0.00 0.00 0.00 3.41
3669 5490 4.454678 TCATCTTATCACCAGCACAATCC 58.545 43.478 0.00 0.00 0.00 3.01
3670 5491 7.918536 ATATCATCTTATCACCAGCACAATC 57.081 36.000 0.00 0.00 0.00 2.67
3671 5492 8.819845 TCTATATCATCTTATCACCAGCACAAT 58.180 33.333 0.00 0.00 0.00 2.71
3672 5493 8.193953 TCTATATCATCTTATCACCAGCACAA 57.806 34.615 0.00 0.00 0.00 3.33
3673 5494 7.578380 GCTCTATATCATCTTATCACCAGCACA 60.578 40.741 0.00 0.00 0.00 4.57
3674 5495 6.756074 GCTCTATATCATCTTATCACCAGCAC 59.244 42.308 0.00 0.00 0.00 4.40
3675 5496 6.666980 AGCTCTATATCATCTTATCACCAGCA 59.333 38.462 0.00 0.00 0.00 4.41
3676 5497 7.111247 AGCTCTATATCATCTTATCACCAGC 57.889 40.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.