Multiple sequence alignment - TraesCS5D01G298600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5D01G298600
chr5D
100.000
2774
0
0
1
2774
396368998
396371771
0.000000e+00
5123.0
1
TraesCS5D01G298600
chr5B
92.147
2534
86
44
1
2471
476168997
476171480
0.000000e+00
3472.0
2
TraesCS5D01G298600
chr5B
90.000
140
14
0
2477
2616
476173292
476173431
6.100000e-42
182.0
3
TraesCS5D01G298600
chr5B
82.883
111
18
1
2650
2759
649003603
649003493
6.320000e-17
99.0
4
TraesCS5D01G298600
chr5B
97.143
35
1
0
1480
1514
535700294
535700328
2.980000e-05
60.2
5
TraesCS5D01G298600
chr5A
88.889
2259
113
50
470
2643
502071168
502073373
0.000000e+00
2654.0
6
TraesCS5D01G298600
chr5A
90.805
348
8
13
1
336
502070675
502071010
7.050000e-121
444.0
7
TraesCS5D01G298600
chr5A
92.683
41
3
0
1477
1517
680843356
680843316
2.980000e-05
60.2
8
TraesCS5D01G298600
chr6D
93.478
46
2
1
1484
1528
27819924
27819879
1.780000e-07
67.6
9
TraesCS5D01G298600
chr6B
95.349
43
1
1
1484
1525
51580035
51579993
1.780000e-07
67.6
10
TraesCS5D01G298600
chr6A
95.122
41
2
0
1484
1524
30190853
30190813
6.410000e-07
65.8
11
TraesCS5D01G298600
chr2B
91.111
45
4
0
1045
1089
82361338
82361382
8.300000e-06
62.1
12
TraesCS5D01G298600
chr2B
91.111
45
4
0
1045
1089
82713832
82713876
8.300000e-06
62.1
13
TraesCS5D01G298600
chr2B
89.583
48
4
1
1042
1089
82851730
82851776
2.980000e-05
60.2
14
TraesCS5D01G298600
chr2A
91.111
45
4
0
1045
1089
54111938
54111982
8.300000e-06
62.1
15
TraesCS5D01G298600
chr4B
92.683
41
3
0
1477
1517
643311116
643311076
2.980000e-05
60.2
16
TraesCS5D01G298600
chr4D
94.595
37
2
0
1481
1517
500023785
500023749
1.070000e-04
58.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5D01G298600
chr5D
396368998
396371771
2773
False
5123
5123
100.0000
1
2774
1
chr5D.!!$F1
2773
1
TraesCS5D01G298600
chr5B
476168997
476173431
4434
False
1827
3472
91.0735
1
2616
2
chr5B.!!$F2
2615
2
TraesCS5D01G298600
chr5A
502070675
502073373
2698
False
1549
2654
89.8470
1
2643
2
chr5A.!!$F1
2642
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
336
357
0.530288
AAAATACACGTGCATGGCCC
59.47
50.0
17.22
0.0
0.0
5.8
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1803
1990
0.034767
CTCTCTTTGGGAGGCATGCA
60.035
55.0
21.36
0.0
42.1
3.96
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
90
92
6.863275
AGTTTAAGGGTTGCTAATGTAATGC
58.137
36.000
0.00
0.00
0.00
3.56
136
138
5.241662
AGCTACAAGTAGAAGCAAAGGAAG
58.758
41.667
11.25
0.00
38.75
3.46
199
215
3.307410
CCCAGTTCACATGTGGTAGCTTA
60.307
47.826
25.16
1.24
0.00
3.09
200
216
3.935203
CCAGTTCACATGTGGTAGCTTAG
59.065
47.826
25.16
5.17
0.00
2.18
201
217
3.372206
CAGTTCACATGTGGTAGCTTAGC
59.628
47.826
25.16
6.59
0.00
3.09
202
218
3.007940
AGTTCACATGTGGTAGCTTAGCA
59.992
43.478
25.16
0.00
0.00
3.49
203
219
3.251479
TCACATGTGGTAGCTTAGCAG
57.749
47.619
25.16
0.00
36.78
4.24
204
220
2.567169
TCACATGTGGTAGCTTAGCAGT
59.433
45.455
25.16
0.00
36.78
4.40
205
221
3.767131
TCACATGTGGTAGCTTAGCAGTA
59.233
43.478
25.16
0.00
36.78
2.74
206
222
4.405680
TCACATGTGGTAGCTTAGCAGTAT
59.594
41.667
25.16
0.00
36.78
2.12
220
241
7.040340
AGCTTAGCAGTATCGTATCACATAGTT
60.040
37.037
7.07
0.00
0.00
2.24
332
353
3.188254
TCCAGTCAAAATACACGTGCATG
59.812
43.478
17.22
3.82
0.00
4.06
333
354
3.491356
CAGTCAAAATACACGTGCATGG
58.509
45.455
17.22
2.27
0.00
3.66
334
355
2.095263
AGTCAAAATACACGTGCATGGC
60.095
45.455
17.22
9.16
0.00
4.40
335
356
1.201181
TCAAAATACACGTGCATGGCC
59.799
47.619
17.22
0.00
0.00
5.36
336
357
0.530288
AAAATACACGTGCATGGCCC
59.470
50.000
17.22
0.00
0.00
5.80
337
358
0.610509
AAATACACGTGCATGGCCCA
60.611
50.000
17.22
0.00
0.00
5.36
338
359
1.312371
AATACACGTGCATGGCCCAC
61.312
55.000
17.22
0.00
0.00
4.61
381
448
2.001812
GCTCGAGCAAACATCTCTCA
57.998
50.000
31.91
0.00
41.59
3.27
382
449
2.341257
GCTCGAGCAAACATCTCTCAA
58.659
47.619
31.91
0.00
41.59
3.02
383
450
2.348059
GCTCGAGCAAACATCTCTCAAG
59.652
50.000
31.91
0.00
41.59
3.02
400
467
5.618236
TCTCAAGCAAGCAAGAGCATATAT
58.382
37.500
8.36
0.00
45.49
0.86
405
472
5.243981
AGCAAGCAAGAGCATATATGGTAG
58.756
41.667
17.08
11.23
45.49
3.18
406
473
4.142730
GCAAGCAAGAGCATATATGGTAGC
60.143
45.833
17.08
19.00
45.49
3.58
407
474
4.897509
AGCAAGAGCATATATGGTAGCA
57.102
40.909
25.40
0.00
45.49
3.49
420
487
3.297391
GTAGCATCAGTAGCTGCCC
57.703
57.895
0.00
0.00
43.33
5.36
453
532
6.036083
GCTCTGTGTGTATAACGATCACAATT
59.964
38.462
0.00
0.00
42.39
2.32
454
533
7.289587
TCTGTGTGTATAACGATCACAATTG
57.710
36.000
3.24
3.24
42.39
2.32
461
540
5.984233
ATAACGATCACAATTGCATACGT
57.016
34.783
5.05
10.05
0.00
3.57
462
541
7.648510
TGTATAACGATCACAATTGCATACGTA
59.351
33.333
16.90
0.00
32.66
3.57
463
542
4.772046
ACGATCACAATTGCATACGTAC
57.228
40.909
15.68
0.00
0.00
3.67
464
543
3.242016
ACGATCACAATTGCATACGTACG
59.758
43.478
15.01
15.01
0.00
3.67
468
547
2.077627
ACAATTGCATACGTACGCCAA
58.922
42.857
16.72
13.61
0.00
4.52
483
562
1.326548
CGCCAAGCCATTACGTACTTC
59.673
52.381
0.00
0.00
0.00
3.01
495
574
9.525409
GCCATTACGTACTTCGGATTTATATAT
57.475
33.333
0.00
0.00
44.69
0.86
527
646
5.109903
AGCAAGCAAGACTAGTTTATACGG
58.890
41.667
0.00
0.00
0.00
4.02
538
657
8.566260
AGACTAGTTTATACGGATACATGACAC
58.434
37.037
0.00
0.00
0.00
3.67
543
662
2.868020
CGGATACATGACACCGTCG
58.132
57.895
16.28
0.00
40.42
5.12
604
742
8.248253
AGTGTCAAATACATATGTACGTGAGAA
58.752
33.333
22.04
14.65
41.10
2.87
719
858
2.243736
ACTGGAAGAGTTGGGGAACAAA
59.756
45.455
0.00
0.00
38.03
2.83
800
939
4.899239
GACGGCGGCAGGATGGAG
62.899
72.222
8.47
0.00
35.86
3.86
888
1027
0.970937
TCCACTCCACTCATCGACCC
60.971
60.000
0.00
0.00
0.00
4.46
954
1103
1.371022
CAGGACTGATCGCCGATCG
60.371
63.158
21.00
17.28
41.51
3.69
962
1111
1.215655
GATCGCCGATCGGTTTCTGG
61.216
60.000
33.33
16.36
39.05
3.86
1326
1505
3.512680
CGAATCGGCTTACTTCTTCAGT
58.487
45.455
0.00
0.00
39.87
3.41
1328
1507
3.528597
ATCGGCTTACTTCTTCAGTCC
57.471
47.619
0.00
0.00
36.88
3.85
1335
1514
0.605589
ACTTCTTCAGTCCGAGGCAG
59.394
55.000
0.00
0.00
0.00
4.85
1641
1820
2.024871
GAGACGACCGGCGATCAG
59.975
66.667
22.10
0.00
44.57
2.90
1713
1892
2.310233
CCACACTTGTCACGCTCCG
61.310
63.158
0.00
0.00
0.00
4.63
1738
1917
1.004080
GAAGAGGTCAGCAGCAGCA
60.004
57.895
3.17
0.00
45.49
4.41
1739
1918
1.297456
GAAGAGGTCAGCAGCAGCAC
61.297
60.000
3.17
0.00
45.49
4.40
1740
1919
2.031616
GAGGTCAGCAGCAGCACA
59.968
61.111
3.17
0.00
45.49
4.57
1777
1959
0.311165
GCATCCGAGACGCTAAGCTA
59.689
55.000
0.00
0.00
0.00
3.32
1778
1960
1.664588
GCATCCGAGACGCTAAGCTAG
60.665
57.143
0.00
0.00
0.00
3.42
1798
1985
3.778097
TTCCAGCTGCTGCAGTGCA
62.778
57.895
28.50
18.58
42.74
4.57
1801
1988
1.154016
CAGCTGCTGCAGTGCAATC
60.154
57.895
28.50
14.06
42.83
2.67
1802
1989
1.602605
AGCTGCTGCAGTGCAATCA
60.603
52.632
28.50
17.75
42.83
2.57
1803
1990
0.965866
AGCTGCTGCAGTGCAATCAT
60.966
50.000
28.50
3.53
42.83
2.45
1804
1991
0.802222
GCTGCTGCAGTGCAATCATG
60.802
55.000
28.50
8.13
42.83
3.07
2086
2290
1.272781
CTCGATCAGCTGTCGTTTCC
58.727
55.000
26.56
7.32
39.91
3.13
2087
2291
0.456142
TCGATCAGCTGTCGTTTCCG
60.456
55.000
26.56
15.77
39.91
4.30
2088
2292
1.710339
GATCAGCTGTCGTTTCCGC
59.290
57.895
14.67
0.00
0.00
5.54
2089
2293
2.014093
GATCAGCTGTCGTTTCCGCG
62.014
60.000
14.67
0.00
0.00
6.46
2122
2326
0.542333
GGTCCCTTTGGCTCTACTCC
59.458
60.000
0.00
0.00
0.00
3.85
2374
2584
3.966543
CCTTGGACGCAGGGGGTT
61.967
66.667
0.00
0.00
0.00
4.11
2434
2644
3.400007
GCGGAAGGCGATCTGTTC
58.600
61.111
0.00
0.00
0.00
3.18
2466
2676
1.241990
ACGGCTCTGAACTCTGCGTA
61.242
55.000
0.00
0.00
0.00
4.42
2473
2683
3.353557
TCTGAACTCTGCGTATAGGTGT
58.646
45.455
0.00
0.00
0.00
4.16
2508
4524
0.661552
GCACTAGCGACGATGGAGTA
59.338
55.000
2.68
0.00
0.00
2.59
2562
4578
4.082571
CCTTTTTCTGCCAGTACAATGAGG
60.083
45.833
0.00
0.00
0.00
3.86
2570
4586
3.127548
GCCAGTACAATGAGGACACAATG
59.872
47.826
0.00
0.00
0.00
2.82
2631
4647
3.328237
AAAAACTACTGACGCGTTTGG
57.672
42.857
15.53
9.40
31.82
3.28
2636
4652
1.500512
TACTGACGCGTTTGGTTGCC
61.501
55.000
15.53
0.00
0.00
4.52
2643
4659
0.173255
GCGTTTGGTTGCCTGCATAT
59.827
50.000
0.00
0.00
0.00
1.78
2644
4660
1.403679
GCGTTTGGTTGCCTGCATATA
59.596
47.619
0.00
0.00
0.00
0.86
2645
4661
2.541588
GCGTTTGGTTGCCTGCATATAG
60.542
50.000
0.00
0.00
0.00
1.31
2646
4662
2.541588
CGTTTGGTTGCCTGCATATAGC
60.542
50.000
0.00
0.00
45.96
2.97
2647
4663
1.691196
TTGGTTGCCTGCATATAGCC
58.309
50.000
0.00
0.00
44.83
3.93
2648
4664
0.178992
TGGTTGCCTGCATATAGCCC
60.179
55.000
0.00
0.00
44.83
5.19
2649
4665
0.178992
GGTTGCCTGCATATAGCCCA
60.179
55.000
0.00
0.00
44.83
5.36
2650
4666
1.691196
GTTGCCTGCATATAGCCCAA
58.309
50.000
0.00
0.00
44.83
4.12
2651
4667
1.338020
GTTGCCTGCATATAGCCCAAC
59.662
52.381
0.00
0.00
44.83
3.77
2652
4668
0.846015
TGCCTGCATATAGCCCAACT
59.154
50.000
0.00
0.00
44.83
3.16
2653
4669
2.054021
TGCCTGCATATAGCCCAACTA
58.946
47.619
0.00
0.00
44.83
2.24
2654
4670
2.038952
TGCCTGCATATAGCCCAACTAG
59.961
50.000
0.00
0.00
44.83
2.57
2655
4671
2.616510
GCCTGCATATAGCCCAACTAGG
60.617
54.545
0.00
0.00
44.83
3.02
2663
4679
4.157120
CCCAACTAGGCCCGGACG
62.157
72.222
0.73
0.00
35.39
4.79
2664
4680
3.072468
CCAACTAGGCCCGGACGA
61.072
66.667
0.73
0.00
0.00
4.20
2665
4681
2.652095
CCAACTAGGCCCGGACGAA
61.652
63.158
0.73
0.00
0.00
3.85
2666
4682
1.294138
CAACTAGGCCCGGACGAAA
59.706
57.895
0.73
0.00
0.00
3.46
2667
4683
0.107848
CAACTAGGCCCGGACGAAAT
60.108
55.000
0.73
0.00
0.00
2.17
2668
4684
0.107848
AACTAGGCCCGGACGAAATG
60.108
55.000
0.73
0.00
0.00
2.32
2669
4685
0.974010
ACTAGGCCCGGACGAAATGA
60.974
55.000
0.73
0.00
0.00
2.57
2670
4686
0.177141
CTAGGCCCGGACGAAATGAA
59.823
55.000
0.73
0.00
0.00
2.57
2671
4687
0.614294
TAGGCCCGGACGAAATGAAA
59.386
50.000
0.73
0.00
0.00
2.69
2672
4688
0.250989
AGGCCCGGACGAAATGAAAA
60.251
50.000
0.73
0.00
0.00
2.29
2673
4689
0.599060
GGCCCGGACGAAATGAAAAA
59.401
50.000
0.73
0.00
0.00
1.94
2693
4709
3.851976
AAACTTGTTTGGTTGCGTACA
57.148
38.095
0.00
0.00
0.00
2.90
2694
4710
3.414549
AACTTGTTTGGTTGCGTACAG
57.585
42.857
0.00
0.00
0.00
2.74
2695
4711
1.673920
ACTTGTTTGGTTGCGTACAGG
59.326
47.619
0.00
0.00
0.00
4.00
2696
4712
1.001815
CTTGTTTGGTTGCGTACAGGG
60.002
52.381
0.00
0.00
0.00
4.45
2697
4713
0.180642
TGTTTGGTTGCGTACAGGGA
59.819
50.000
0.00
0.00
0.00
4.20
2698
4714
0.872388
GTTTGGTTGCGTACAGGGAG
59.128
55.000
0.00
0.00
0.00
4.30
2699
4715
0.759959
TTTGGTTGCGTACAGGGAGA
59.240
50.000
0.00
0.00
0.00
3.71
2700
4716
0.034337
TTGGTTGCGTACAGGGAGAC
59.966
55.000
0.00
0.00
0.00
3.36
2713
4729
2.471255
GGAGACCTGGTTTGCATCG
58.529
57.895
0.00
0.00
0.00
3.84
2714
4730
0.036388
GGAGACCTGGTTTGCATCGA
60.036
55.000
0.00
0.00
0.00
3.59
2715
4731
1.079503
GAGACCTGGTTTGCATCGAC
58.920
55.000
0.00
0.00
0.00
4.20
2716
4732
0.396435
AGACCTGGTTTGCATCGACA
59.604
50.000
0.00
0.00
0.00
4.35
2717
4733
0.517316
GACCTGGTTTGCATCGACAC
59.483
55.000
0.00
0.00
0.00
3.67
2718
4734
0.179032
ACCTGGTTTGCATCGACACA
60.179
50.000
0.00
0.00
0.00
3.72
2719
4735
0.950836
CCTGGTTTGCATCGACACAA
59.049
50.000
0.00
0.00
0.00
3.33
2720
4736
1.336440
CCTGGTTTGCATCGACACAAA
59.664
47.619
9.88
9.88
33.55
2.83
2721
4737
2.223688
CCTGGTTTGCATCGACACAAAA
60.224
45.455
14.32
2.37
37.50
2.44
2722
4738
3.552684
CCTGGTTTGCATCGACACAAAAT
60.553
43.478
14.32
0.00
37.50
1.82
2723
4739
4.050553
CTGGTTTGCATCGACACAAAATT
58.949
39.130
14.32
0.00
37.50
1.82
2724
4740
4.437239
TGGTTTGCATCGACACAAAATTT
58.563
34.783
14.32
0.00
37.50
1.82
2725
4741
5.592054
TGGTTTGCATCGACACAAAATTTA
58.408
33.333
14.32
2.09
37.50
1.40
2726
4742
6.042777
TGGTTTGCATCGACACAAAATTTAA
58.957
32.000
14.32
0.05
37.50
1.52
2727
4743
6.535150
TGGTTTGCATCGACACAAAATTTAAA
59.465
30.769
14.32
0.00
37.50
1.52
2728
4744
7.062848
GGTTTGCATCGACACAAAATTTAAAG
58.937
34.615
14.32
0.00
37.50
1.85
2729
4745
5.820926
TGCATCGACACAAAATTTAAAGC
57.179
34.783
0.00
0.00
0.00
3.51
2730
4746
5.284864
TGCATCGACACAAAATTTAAAGCA
58.715
33.333
0.00
0.00
0.00
3.91
2731
4747
5.174761
TGCATCGACACAAAATTTAAAGCAC
59.825
36.000
0.00
0.00
0.00
4.40
2732
4748
5.388371
GCATCGACACAAAATTTAAAGCACC
60.388
40.000
0.00
0.00
0.00
5.01
2733
4749
4.612943
TCGACACAAAATTTAAAGCACCC
58.387
39.130
0.00
0.00
0.00
4.61
2734
4750
3.738791
CGACACAAAATTTAAAGCACCCC
59.261
43.478
0.00
0.00
0.00
4.95
2735
4751
4.698575
GACACAAAATTTAAAGCACCCCA
58.301
39.130
0.00
0.00
0.00
4.96
2736
4752
4.702831
ACACAAAATTTAAAGCACCCCAG
58.297
39.130
0.00
0.00
0.00
4.45
2737
4753
4.407296
ACACAAAATTTAAAGCACCCCAGA
59.593
37.500
0.00
0.00
0.00
3.86
2738
4754
4.990426
CACAAAATTTAAAGCACCCCAGAG
59.010
41.667
0.00
0.00
0.00
3.35
2739
4755
3.961480
AAATTTAAAGCACCCCAGAGC
57.039
42.857
0.00
0.00
0.00
4.09
2740
4756
1.852633
ATTTAAAGCACCCCAGAGCC
58.147
50.000
0.00
0.00
0.00
4.70
2741
4757
0.777446
TTTAAAGCACCCCAGAGCCT
59.223
50.000
0.00
0.00
0.00
4.58
2742
4758
0.038166
TTAAAGCACCCCAGAGCCTG
59.962
55.000
0.00
0.00
0.00
4.85
2743
4759
0.840288
TAAAGCACCCCAGAGCCTGA
60.840
55.000
4.00
0.00
32.44
3.86
2744
4760
2.417558
AAAGCACCCCAGAGCCTGAC
62.418
60.000
4.00
0.00
32.44
3.51
2745
4761
3.325753
GCACCCCAGAGCCTGACT
61.326
66.667
4.00
0.00
32.44
3.41
2746
4762
2.985456
CACCCCAGAGCCTGACTC
59.015
66.667
4.00
0.00
46.66
3.36
2753
4769
3.941081
GAGCCTGACTCGATGGGA
58.059
61.111
0.00
0.00
35.18
4.37
2754
4770
2.202866
GAGCCTGACTCGATGGGAA
58.797
57.895
0.00
0.00
35.18
3.97
2755
4771
0.179097
GAGCCTGACTCGATGGGAAC
60.179
60.000
0.00
0.00
35.18
3.62
2756
4772
2.838738
GAGCCTGACTCGATGGGAACA
61.839
57.143
0.00
0.00
39.65
3.18
2757
4773
4.921416
GAGCCTGACTCGATGGGAACAC
62.921
59.091
0.00
0.00
38.52
3.32
2767
4783
2.941210
TGGGAACACTTGAATCCGC
58.059
52.632
0.00
0.00
33.90
5.54
2768
4784
0.400213
TGGGAACACTTGAATCCGCT
59.600
50.000
0.00
0.00
33.90
5.52
2769
4785
0.804989
GGGAACACTTGAATCCGCTG
59.195
55.000
0.00
0.00
33.90
5.18
2770
4786
1.523758
GGAACACTTGAATCCGCTGT
58.476
50.000
0.00
0.00
0.00
4.40
2771
4787
1.880027
GGAACACTTGAATCCGCTGTT
59.120
47.619
0.00
0.00
0.00
3.16
2772
4788
2.293399
GGAACACTTGAATCCGCTGTTT
59.707
45.455
0.00
0.00
0.00
2.83
2773
4789
3.555518
GAACACTTGAATCCGCTGTTTC
58.444
45.455
0.00
0.00
0.00
2.78
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
199
215
6.392625
ACAACTATGTGATACGATACTGCT
57.607
37.500
0.00
0.00
38.69
4.24
200
216
7.361127
AGTACAACTATGTGATACGATACTGC
58.639
38.462
0.00
0.00
40.84
4.40
202
218
9.775854
ACTAGTACAACTATGTGATACGATACT
57.224
33.333
0.00
0.00
40.84
2.12
220
241
7.491372
GTGCTCTGCATGTTAATTACTAGTACA
59.509
37.037
0.91
0.00
41.91
2.90
335
356
1.750399
CTTTCATGGCCCCTCGTGG
60.750
63.158
0.00
0.00
0.00
4.94
336
357
2.409870
GCTTTCATGGCCCCTCGTG
61.410
63.158
0.00
0.00
0.00
4.35
337
358
2.044946
GCTTTCATGGCCCCTCGT
60.045
61.111
0.00
0.00
0.00
4.18
338
359
2.830370
GGCTTTCATGGCCCCTCG
60.830
66.667
0.00
0.00
43.49
4.63
344
365
1.807886
CAGAGCAGGCTTTCATGGC
59.192
57.895
0.00
0.00
0.00
4.40
345
366
0.680280
AGCAGAGCAGGCTTTCATGG
60.680
55.000
0.00
0.00
38.81
3.66
346
367
0.733729
GAGCAGAGCAGGCTTTCATG
59.266
55.000
0.00
0.00
42.78
3.07
347
368
0.743701
CGAGCAGAGCAGGCTTTCAT
60.744
55.000
0.00
0.00
42.78
2.57
348
369
1.375140
CGAGCAGAGCAGGCTTTCA
60.375
57.895
0.00
0.00
42.78
2.69
349
370
1.079543
TCGAGCAGAGCAGGCTTTC
60.080
57.895
0.00
0.00
42.78
2.62
350
371
1.079266
CTCGAGCAGAGCAGGCTTT
60.079
57.895
0.00
0.00
42.78
3.51
351
372
2.578128
CTCGAGCAGAGCAGGCTT
59.422
61.111
0.00
0.00
42.78
4.35
369
436
3.909776
TGCTTGCTTGAGAGATGTTTG
57.090
42.857
0.00
0.00
0.00
2.93
372
439
3.336468
CTCTTGCTTGCTTGAGAGATGT
58.664
45.455
12.36
0.00
38.27
3.06
373
440
2.096174
GCTCTTGCTTGCTTGAGAGATG
59.904
50.000
18.05
2.35
38.27
2.90
374
441
2.290134
TGCTCTTGCTTGCTTGAGAGAT
60.290
45.455
18.05
0.00
38.27
2.75
375
442
1.071228
TGCTCTTGCTTGCTTGAGAGA
59.929
47.619
18.05
5.04
38.27
3.10
376
443
1.520494
TGCTCTTGCTTGCTTGAGAG
58.480
50.000
15.26
14.08
40.48
3.20
377
444
2.195741
ATGCTCTTGCTTGCTTGAGA
57.804
45.000
15.26
6.66
40.48
3.27
378
445
5.334957
CCATATATGCTCTTGCTTGCTTGAG
60.335
44.000
7.24
9.64
40.48
3.02
379
446
4.517832
CCATATATGCTCTTGCTTGCTTGA
59.482
41.667
7.24
0.00
40.48
3.02
380
447
4.277672
ACCATATATGCTCTTGCTTGCTTG
59.722
41.667
7.24
0.00
40.48
4.01
381
448
4.467769
ACCATATATGCTCTTGCTTGCTT
58.532
39.130
7.24
0.00
40.48
3.91
382
449
4.096190
ACCATATATGCTCTTGCTTGCT
57.904
40.909
7.24
0.00
40.48
3.91
383
450
4.142730
GCTACCATATATGCTCTTGCTTGC
60.143
45.833
7.24
0.00
40.48
4.01
431
510
5.959527
GCAATTGTGATCGTTATACACACAG
59.040
40.000
7.40
0.00
42.80
3.66
432
511
5.409826
TGCAATTGTGATCGTTATACACACA
59.590
36.000
7.40
0.00
42.80
3.72
433
512
5.863898
TGCAATTGTGATCGTTATACACAC
58.136
37.500
7.40
0.00
42.80
3.82
435
514
6.785633
CGTATGCAATTGTGATCGTTATACAC
59.214
38.462
7.40
0.00
35.45
2.90
453
532
1.812093
GGCTTGGCGTACGTATGCA
60.812
57.895
33.99
20.67
39.92
3.96
454
533
1.157870
ATGGCTTGGCGTACGTATGC
61.158
55.000
27.89
27.89
37.49
3.14
461
540
1.477700
AGTACGTAATGGCTTGGCGTA
59.522
47.619
0.00
0.00
37.05
4.42
462
541
0.248289
AGTACGTAATGGCTTGGCGT
59.752
50.000
0.00
7.42
39.23
5.68
463
542
1.326548
GAAGTACGTAATGGCTTGGCG
59.673
52.381
0.00
0.00
0.00
5.69
464
543
1.326548
CGAAGTACGTAATGGCTTGGC
59.673
52.381
0.00
0.00
37.22
4.52
468
547
3.814005
AATCCGAAGTACGTAATGGCT
57.186
42.857
0.00
0.00
40.78
4.75
495
574
3.808728
AGTCTTGCTTGCTACACAAAGA
58.191
40.909
0.00
0.00
37.96
2.52
496
575
4.752101
ACTAGTCTTGCTTGCTACACAAAG
59.248
41.667
0.00
0.00
37.96
2.77
510
589
9.395707
GTCATGTATCCGTATAAACTAGTCTTG
57.604
37.037
0.00
0.00
0.00
3.02
511
590
9.128404
TGTCATGTATCCGTATAAACTAGTCTT
57.872
33.333
0.00
0.00
0.00
3.01
512
591
8.566260
GTGTCATGTATCCGTATAAACTAGTCT
58.434
37.037
0.00
0.00
0.00
3.24
527
646
1.522676
CATGCGACGGTGTCATGTATC
59.477
52.381
0.00
0.00
34.48
2.24
538
657
2.223021
CCTTGTTCAATACATGCGACGG
60.223
50.000
0.00
0.00
36.44
4.79
604
742
2.373169
AGGGATGTGATAATGCCATCGT
59.627
45.455
0.00
0.00
40.37
3.73
719
858
0.898320
CGTCTCCCTCACCACTGAAT
59.102
55.000
0.00
0.00
0.00
2.57
888
1027
1.952621
TTTGGTAGAGAGGTGAGGGG
58.047
55.000
0.00
0.00
0.00
4.79
891
1030
4.608948
ACAGTTTTGGTAGAGAGGTGAG
57.391
45.455
0.00
0.00
0.00
3.51
937
1079
2.556459
CCGATCGGCGATCAGTCCT
61.556
63.158
39.10
13.50
44.57
3.85
938
1080
2.049985
CCGATCGGCGATCAGTCC
60.050
66.667
39.10
20.23
44.57
3.85
954
1103
1.813178
GCAAGTAGAAGGCCAGAAACC
59.187
52.381
5.01
0.00
0.00
3.27
962
1111
3.190744
GGTTTAAGGTGCAAGTAGAAGGC
59.809
47.826
0.00
0.00
0.00
4.35
1305
1484
3.512680
ACTGAAGAAGTAAGCCGATTCG
58.487
45.455
0.00
0.00
37.36
3.34
1366
1545
3.400054
GGCCTTCCAGTACCCGCT
61.400
66.667
0.00
0.00
0.00
5.52
1454
1633
4.680237
CGCGGTGGAAGGTGAGCA
62.680
66.667
0.00
0.00
0.00
4.26
1779
1961
2.979197
GCACTGCAGCAGCTGGAAG
61.979
63.158
24.13
16.66
43.24
3.46
1780
1962
2.981909
GCACTGCAGCAGCTGGAA
60.982
61.111
24.13
0.00
43.24
3.53
1781
1963
3.778097
TTGCACTGCAGCAGCTGGA
62.778
57.895
24.13
20.53
46.54
3.86
1782
1964
2.543687
GATTGCACTGCAGCAGCTGG
62.544
60.000
24.13
13.16
46.54
4.85
1784
1966
0.965866
ATGATTGCACTGCAGCAGCT
60.966
50.000
26.04
11.96
46.54
4.24
1798
1985
1.760613
CTTTGGGAGGCATGCATGATT
59.239
47.619
30.64
16.51
0.00
2.57
1801
1988
0.744874
CTCTTTGGGAGGCATGCATG
59.255
55.000
22.70
22.70
38.35
4.06
1802
1989
0.627451
TCTCTTTGGGAGGCATGCAT
59.373
50.000
21.36
13.78
42.10
3.96
1803
1990
0.034767
CTCTCTTTGGGAGGCATGCA
60.035
55.000
21.36
0.00
42.10
3.96
1804
1991
0.750911
CCTCTCTTTGGGAGGCATGC
60.751
60.000
9.90
9.90
42.95
4.06
1832
2019
3.739209
GCTGGAATTTAAATGCCTGGCTC
60.739
47.826
25.67
11.46
34.93
4.70
1833
2020
2.169144
GCTGGAATTTAAATGCCTGGCT
59.831
45.455
25.67
1.67
34.93
4.75
1834
2021
2.554142
GCTGGAATTTAAATGCCTGGC
58.446
47.619
25.67
22.80
34.93
4.85
1835
2022
3.183793
GGCTGGAATTTAAATGCCTGG
57.816
47.619
25.67
18.68
34.93
4.45
2006
2206
4.642885
CGGGCTTAATTAATCCTGGTTTCA
59.357
41.667
16.20
0.00
0.00
2.69
2122
2326
7.435305
AGGCCATTTTTCCATTTCAAATTTTG
58.565
30.769
5.01
2.59
0.00
2.44
2271
2475
4.200283
CCGGTCGCTCTGCCTCTC
62.200
72.222
0.00
0.00
0.00
3.20
2374
2584
4.916293
GATCCGCATCCGCAGCCA
62.916
66.667
0.00
0.00
38.40
4.75
2466
2676
1.497161
GCCTGTCACCCTACACCTAT
58.503
55.000
0.00
0.00
0.00
2.57
2493
4509
1.878088
GACCATACTCCATCGTCGCTA
59.122
52.381
0.00
0.00
0.00
4.26
2498
4514
2.168521
CCACAAGACCATACTCCATCGT
59.831
50.000
0.00
0.00
0.00
3.73
2619
4635
2.051345
GGCAACCAAACGCGTCAG
60.051
61.111
14.44
8.23
0.00
3.51
2623
4639
2.193865
TATGCAGGCAACCAAACGCG
62.194
55.000
3.53
3.53
37.17
6.01
2631
4647
1.338020
GTTGGGCTATATGCAGGCAAC
59.662
52.381
0.00
0.00
45.15
4.17
2646
4662
4.157120
CGTCCGGGCCTAGTTGGG
62.157
72.222
0.00
0.00
36.00
4.12
2647
4663
2.175035
TTTCGTCCGGGCCTAGTTGG
62.175
60.000
0.00
0.00
39.35
3.77
2648
4664
0.107848
ATTTCGTCCGGGCCTAGTTG
60.108
55.000
0.00
0.00
0.00
3.16
2649
4665
0.107848
CATTTCGTCCGGGCCTAGTT
60.108
55.000
0.00
0.00
0.00
2.24
2650
4666
0.974010
TCATTTCGTCCGGGCCTAGT
60.974
55.000
0.00
0.00
0.00
2.57
2651
4667
0.177141
TTCATTTCGTCCGGGCCTAG
59.823
55.000
0.00
0.00
0.00
3.02
2652
4668
0.614294
TTTCATTTCGTCCGGGCCTA
59.386
50.000
0.00
0.00
0.00
3.93
2653
4669
0.250989
TTTTCATTTCGTCCGGGCCT
60.251
50.000
0.00
0.00
0.00
5.19
2654
4670
0.599060
TTTTTCATTTCGTCCGGGCC
59.401
50.000
0.00
0.00
0.00
5.80
2671
4687
4.557205
TGTACGCAACCAAACAAGTTTTT
58.443
34.783
0.00
0.00
0.00
1.94
2672
4688
4.170256
CTGTACGCAACCAAACAAGTTTT
58.830
39.130
0.00
0.00
0.00
2.43
2673
4689
3.428316
CCTGTACGCAACCAAACAAGTTT
60.428
43.478
0.00
0.00
0.00
2.66
2674
4690
2.098443
CCTGTACGCAACCAAACAAGTT
59.902
45.455
0.00
0.00
0.00
2.66
2675
4691
1.673920
CCTGTACGCAACCAAACAAGT
59.326
47.619
0.00
0.00
0.00
3.16
2676
4692
1.001815
CCCTGTACGCAACCAAACAAG
60.002
52.381
0.00
0.00
0.00
3.16
2677
4693
1.025812
CCCTGTACGCAACCAAACAA
58.974
50.000
0.00
0.00
0.00
2.83
2678
4694
0.180642
TCCCTGTACGCAACCAAACA
59.819
50.000
0.00
0.00
0.00
2.83
2679
4695
0.872388
CTCCCTGTACGCAACCAAAC
59.128
55.000
0.00
0.00
0.00
2.93
2680
4696
0.759959
TCTCCCTGTACGCAACCAAA
59.240
50.000
0.00
0.00
0.00
3.28
2681
4697
0.034337
GTCTCCCTGTACGCAACCAA
59.966
55.000
0.00
0.00
0.00
3.67
2682
4698
1.669440
GTCTCCCTGTACGCAACCA
59.331
57.895
0.00
0.00
0.00
3.67
2683
4699
1.079336
GGTCTCCCTGTACGCAACC
60.079
63.158
0.00
0.00
0.00
3.77
2684
4700
1.972978
AGGTCTCCCTGTACGCAAC
59.027
57.895
0.00
0.00
40.58
4.17
2685
4701
4.533318
AGGTCTCCCTGTACGCAA
57.467
55.556
0.00
0.00
40.58
4.85
2693
4709
0.329596
GATGCAAACCAGGTCTCCCT
59.670
55.000
0.00
0.00
44.02
4.20
2694
4710
1.026718
CGATGCAAACCAGGTCTCCC
61.027
60.000
0.00
0.00
0.00
4.30
2695
4711
0.036388
TCGATGCAAACCAGGTCTCC
60.036
55.000
0.00
0.00
0.00
3.71
2696
4712
1.079503
GTCGATGCAAACCAGGTCTC
58.920
55.000
0.00
0.00
0.00
3.36
2697
4713
0.396435
TGTCGATGCAAACCAGGTCT
59.604
50.000
0.00
0.00
0.00
3.85
2698
4714
0.517316
GTGTCGATGCAAACCAGGTC
59.483
55.000
0.00
0.00
0.00
3.85
2699
4715
0.179032
TGTGTCGATGCAAACCAGGT
60.179
50.000
0.00
0.00
0.00
4.00
2700
4716
0.950836
TTGTGTCGATGCAAACCAGG
59.049
50.000
0.00
0.00
0.00
4.45
2701
4717
2.772568
TTTGTGTCGATGCAAACCAG
57.227
45.000
11.58
0.00
30.68
4.00
2702
4718
3.724508
ATTTTGTGTCGATGCAAACCA
57.275
38.095
14.19
4.82
34.77
3.67
2703
4719
6.517914
TTAAATTTTGTGTCGATGCAAACC
57.482
33.333
14.19
0.00
34.77
3.27
2704
4720
6.569693
GCTTTAAATTTTGTGTCGATGCAAAC
59.430
34.615
14.19
0.00
34.77
2.93
2705
4721
6.256539
TGCTTTAAATTTTGTGTCGATGCAAA
59.743
30.769
11.58
11.58
33.40
3.68
2706
4722
5.750547
TGCTTTAAATTTTGTGTCGATGCAA
59.249
32.000
0.00
0.00
0.00
4.08
2707
4723
5.174761
GTGCTTTAAATTTTGTGTCGATGCA
59.825
36.000
0.00
0.00
0.00
3.96
2708
4724
5.388371
GGTGCTTTAAATTTTGTGTCGATGC
60.388
40.000
0.00
0.00
0.00
3.91
2709
4725
5.118510
GGGTGCTTTAAATTTTGTGTCGATG
59.881
40.000
0.00
0.00
0.00
3.84
2710
4726
5.227152
GGGTGCTTTAAATTTTGTGTCGAT
58.773
37.500
0.00
0.00
0.00
3.59
2711
4727
4.500035
GGGGTGCTTTAAATTTTGTGTCGA
60.500
41.667
0.00
0.00
0.00
4.20
2712
4728
3.738791
GGGGTGCTTTAAATTTTGTGTCG
59.261
43.478
0.00
0.00
0.00
4.35
2713
4729
4.698575
TGGGGTGCTTTAAATTTTGTGTC
58.301
39.130
0.00
0.00
0.00
3.67
2714
4730
4.407296
TCTGGGGTGCTTTAAATTTTGTGT
59.593
37.500
0.00
0.00
0.00
3.72
2715
4731
4.954875
TCTGGGGTGCTTTAAATTTTGTG
58.045
39.130
0.00
0.00
0.00
3.33
2716
4732
4.503123
GCTCTGGGGTGCTTTAAATTTTGT
60.503
41.667
0.00
0.00
0.00
2.83
2717
4733
3.996363
GCTCTGGGGTGCTTTAAATTTTG
59.004
43.478
0.00
0.00
0.00
2.44
2718
4734
3.007940
GGCTCTGGGGTGCTTTAAATTTT
59.992
43.478
0.00
0.00
33.10
1.82
2719
4735
2.567169
GGCTCTGGGGTGCTTTAAATTT
59.433
45.455
0.00
0.00
33.10
1.82
2720
4736
2.179427
GGCTCTGGGGTGCTTTAAATT
58.821
47.619
0.00
0.00
33.10
1.82
2721
4737
1.359130
AGGCTCTGGGGTGCTTTAAAT
59.641
47.619
0.00
0.00
33.10
1.40
2722
4738
0.777446
AGGCTCTGGGGTGCTTTAAA
59.223
50.000
0.00
0.00
33.10
1.52
2723
4739
0.038166
CAGGCTCTGGGGTGCTTTAA
59.962
55.000
0.00
0.00
33.10
1.52
2724
4740
0.840288
TCAGGCTCTGGGGTGCTTTA
60.840
55.000
2.86
0.00
33.10
1.85
2725
4741
2.156098
TCAGGCTCTGGGGTGCTTT
61.156
57.895
2.86
0.00
33.10
3.51
2726
4742
2.530151
TCAGGCTCTGGGGTGCTT
60.530
61.111
2.86
0.00
33.10
3.91
2727
4743
3.325753
GTCAGGCTCTGGGGTGCT
61.326
66.667
2.86
0.00
33.10
4.40
2728
4744
3.322318
GAGTCAGGCTCTGGGGTGC
62.322
68.421
0.00
0.00
40.98
5.01
2729
4745
2.985456
GAGTCAGGCTCTGGGGTG
59.015
66.667
0.00
0.00
40.98
4.61
2730
4746
2.522198
ATCGAGTCAGGCTCTGGGGT
62.522
60.000
0.00
0.00
41.98
4.95
2731
4747
1.760086
ATCGAGTCAGGCTCTGGGG
60.760
63.158
0.00
0.00
41.98
4.96
2732
4748
1.440893
CATCGAGTCAGGCTCTGGG
59.559
63.158
0.00
0.00
41.98
4.45
2733
4749
1.440893
CCATCGAGTCAGGCTCTGG
59.559
63.158
0.00
0.00
41.98
3.86
2734
4750
1.039785
TCCCATCGAGTCAGGCTCTG
61.040
60.000
0.00
0.00
41.98
3.35
2735
4751
0.324738
TTCCCATCGAGTCAGGCTCT
60.325
55.000
0.00
0.00
41.98
4.09
2736
4752
0.179097
GTTCCCATCGAGTCAGGCTC
60.179
60.000
0.00
0.00
40.77
4.70
2737
4753
0.904865
TGTTCCCATCGAGTCAGGCT
60.905
55.000
0.00
0.00
0.00
4.58
2738
4754
0.741221
GTGTTCCCATCGAGTCAGGC
60.741
60.000
0.00
0.00
0.00
4.85
2739
4755
0.898320
AGTGTTCCCATCGAGTCAGG
59.102
55.000
0.00
0.00
0.00
3.86
2740
4756
2.029020
TCAAGTGTTCCCATCGAGTCAG
60.029
50.000
0.00
0.00
0.00
3.51
2741
4757
1.967779
TCAAGTGTTCCCATCGAGTCA
59.032
47.619
0.00
0.00
0.00
3.41
2742
4758
2.743636
TCAAGTGTTCCCATCGAGTC
57.256
50.000
0.00
0.00
0.00
3.36
2743
4759
3.600388
GATTCAAGTGTTCCCATCGAGT
58.400
45.455
0.00
0.00
0.00
4.18
2744
4760
2.939103
GGATTCAAGTGTTCCCATCGAG
59.061
50.000
0.00
0.00
0.00
4.04
2745
4761
2.676750
CGGATTCAAGTGTTCCCATCGA
60.677
50.000
0.00
0.00
0.00
3.59
2746
4762
1.665679
CGGATTCAAGTGTTCCCATCG
59.334
52.381
0.00
0.00
0.00
3.84
2747
4763
1.401905
GCGGATTCAAGTGTTCCCATC
59.598
52.381
0.00
0.00
0.00
3.51
2748
4764
1.004745
AGCGGATTCAAGTGTTCCCAT
59.995
47.619
0.00
0.00
0.00
4.00
2749
4765
0.400213
AGCGGATTCAAGTGTTCCCA
59.600
50.000
0.00
0.00
0.00
4.37
2750
4766
0.804989
CAGCGGATTCAAGTGTTCCC
59.195
55.000
0.00
0.00
0.00
3.97
2751
4767
1.523758
ACAGCGGATTCAAGTGTTCC
58.476
50.000
0.00
0.00
0.00
3.62
2752
4768
3.555518
GAAACAGCGGATTCAAGTGTTC
58.444
45.455
2.08
0.00
31.04
3.18
2753
4769
3.626028
GAAACAGCGGATTCAAGTGTT
57.374
42.857
2.08
0.00
32.75
3.32
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.