Multiple sequence alignment - TraesCS5D01G297800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G297800 chr5D 100.000 6113 0 0 1 6113 395253885 395259997 0.000000e+00 11289.0
1 TraesCS5D01G297800 chr5D 93.796 274 10 4 1 273 276475075 276475342 7.380000e-109 405.0
2 TraesCS5D01G297800 chr5D 89.796 49 3 2 4192 4239 437617175 437617128 1.840000e-05 62.1
3 TraesCS5D01G297800 chr5B 98.241 5344 62 16 275 5612 475585144 475590461 0.000000e+00 9319.0
4 TraesCS5D01G297800 chr5B 79.530 1617 263 39 3513 5116 474577426 474578987 0.000000e+00 1090.0
5 TraesCS5D01G297800 chr5B 80.922 1258 205 17 3513 4745 474610747 474611994 0.000000e+00 961.0
6 TraesCS5D01G297800 chr5B 94.059 303 16 2 5813 6113 475686566 475686868 5.580000e-125 459.0
7 TraesCS5D01G297800 chr5B 95.434 219 10 0 1 219 475584714 475584932 3.510000e-92 350.0
8 TraesCS5D01G297800 chr5B 78.692 413 39 20 5602 5968 678447392 678447801 4.770000e-56 230.0
9 TraesCS5D01G297800 chr5B 92.727 110 6 2 5963 6072 475687601 475687494 2.280000e-34 158.0
10 TraesCS5D01G297800 chr5B 95.946 74 3 0 5744 5817 475590503 475590576 2.990000e-23 121.0
11 TraesCS5D01G297800 chr5B 91.837 49 2 2 4192 4239 439271755 439271802 3.950000e-07 67.6
12 TraesCS5D01G297800 chr5B 89.796 49 3 2 4192 4239 531634419 531634372 1.840000e-05 62.1
13 TraesCS5D01G297800 chr5A 79.852 1618 267 34 3513 5115 501405637 501407210 0.000000e+00 1127.0
14 TraesCS5D01G297800 chr5A 79.497 1629 267 41 3513 5116 500631306 500632892 0.000000e+00 1096.0
15 TraesCS5D01G297800 chr5A 96.226 53 2 0 221 273 601349537 601349589 3.040000e-13 87.9
16 TraesCS5D01G297800 chr5A 89.796 49 3 2 4192 4239 552630593 552630546 1.840000e-05 62.1
17 TraesCS5D01G297800 chr2D 93.796 274 10 4 1 273 640823038 640823305 7.380000e-109 405.0
18 TraesCS5D01G297800 chr2D 93.431 274 11 4 1 273 640822530 640822797 3.430000e-107 399.0
19 TraesCS5D01G297800 chr2D 91.556 225 15 3 2 222 645767701 645767477 2.140000e-79 307.0
20 TraesCS5D01G297800 chr2D 91.324 219 13 3 4 219 596256218 596256433 1.670000e-75 294.0
21 TraesCS5D01G297800 chr2D 80.455 440 31 20 5577 5968 113500347 113499915 1.000000e-72 285.0
22 TraesCS5D01G297800 chr2D 96.026 151 4 2 5963 6113 62303850 62303998 1.700000e-60 244.0
23 TraesCS5D01G297800 chr2D 94.872 39 1 1 5574 5612 9925851 9925888 6.620000e-05 60.2
24 TraesCS5D01G297800 chr6A 92.444 225 13 3 2 222 581971078 581970854 9.890000e-83 318.0
25 TraesCS5D01G297800 chr6D 80.682 440 30 15 5577 5968 436001313 436000881 2.160000e-74 291.0
26 TraesCS5D01G297800 chr4A 90.541 222 17 3 2 219 684216185 684216406 2.160000e-74 291.0
27 TraesCS5D01G297800 chr4D 80.227 440 32 19 5577 5968 36626643 36626211 4.670000e-71 279.0
28 TraesCS5D01G297800 chr4D 79.592 441 33 24 5577 5968 416848028 416847596 4.700000e-66 263.0
29 TraesCS5D01G297800 chr4D 92.523 107 6 2 5963 6069 485095718 485095614 1.060000e-32 152.0
30 TraesCS5D01G297800 chr4D 84.466 103 14 2 5808 5909 59619604 59619503 3.900000e-17 100.0
31 TraesCS5D01G297800 chr2A 89.686 223 17 5 2 219 87812269 87812490 4.670000e-71 279.0
32 TraesCS5D01G297800 chr2A 90.909 110 9 1 5963 6072 734737699 734737807 4.940000e-31 147.0
33 TraesCS5D01G297800 chr4B 79.759 415 35 17 5602 5968 220283027 220282614 7.860000e-64 255.0
34 TraesCS5D01G297800 chr4B 91.071 112 9 1 5961 6072 637350104 637350214 3.820000e-32 150.0
35 TraesCS5D01G297800 chr7B 79.126 412 40 18 5602 5968 198976382 198976792 6.120000e-60 243.0
36 TraesCS5D01G297800 chr7B 88.166 169 13 3 5800 5968 665310941 665310780 1.740000e-45 195.0
37 TraesCS5D01G297800 chr7D 91.018 167 9 2 5802 5968 561810642 561810802 2.870000e-53 220.0
38 TraesCS5D01G297800 chr7D 78.713 202 22 9 5613 5796 561810410 561810608 1.390000e-21 115.0
39 TraesCS5D01G297800 chr3B 85.930 199 15 5 5574 5760 823396002 823395805 3.740000e-47 200.0
40 TraesCS5D01G297800 chr3B 86.822 129 17 0 5799 5927 18213932 18214060 1.780000e-30 145.0
41 TraesCS5D01G297800 chr3B 92.857 70 5 0 5802 5871 823395723 823395654 1.080000e-17 102.0
42 TraesCS5D01G297800 chr3B 94.872 39 1 1 5574 5612 60743539 60743502 6.620000e-05 60.2
43 TraesCS5D01G297800 chr6B 77.240 413 46 18 5602 5968 624702222 624701812 1.340000e-46 198.0
44 TraesCS5D01G297800 chr6B 97.297 37 1 0 3758 3794 218218598 218218634 5.120000e-06 63.9
45 TraesCS5D01G297800 chr2B 83.417 199 30 3 5602 5799 123187856 123187660 1.350000e-41 182.0
46 TraesCS5D01G297800 chrUn 81.423 253 17 20 5744 5968 87856490 87856240 4.870000e-41 180.0
47 TraesCS5D01G297800 chr1D 95.495 111 4 1 5962 6072 434265884 434265993 6.300000e-40 176.0
48 TraesCS5D01G297800 chr1D 85.430 151 19 3 5964 6113 434267170 434267022 2.950000e-33 154.0
49 TraesCS5D01G297800 chr7A 93.636 110 6 1 5963 6072 709291521 709291413 4.900000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G297800 chr5D 395253885 395259997 6112 False 11289.000000 11289 100.000000 1 6113 1 chr5D.!!$F2 6112
1 TraesCS5D01G297800 chr5B 475584714 475590576 5862 False 3263.333333 9319 96.540333 1 5817 3 chr5B.!!$F6 5816
2 TraesCS5D01G297800 chr5B 474577426 474578987 1561 False 1090.000000 1090 79.530000 3513 5116 1 chr5B.!!$F2 1603
3 TraesCS5D01G297800 chr5B 474610747 474611994 1247 False 961.000000 961 80.922000 3513 4745 1 chr5B.!!$F3 1232
4 TraesCS5D01G297800 chr5A 501405637 501407210 1573 False 1127.000000 1127 79.852000 3513 5115 1 chr5A.!!$F2 1602
5 TraesCS5D01G297800 chr5A 500631306 500632892 1586 False 1096.000000 1096 79.497000 3513 5116 1 chr5A.!!$F1 1603
6 TraesCS5D01G297800 chr2D 640822530 640823305 775 False 402.000000 405 93.613500 1 273 2 chr2D.!!$F4 272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 1524 0.249114 TTACGCACTCTGTTCACGCA 60.249 50.000 0.00 0.00 0.00 5.24 F
2686 3358 1.333619 CCACACAACTTTGTCCTTCGG 59.666 52.381 0.00 0.00 39.91 4.30 F
2696 3368 0.613260 TGTCCTTCGGATGACCCTTG 59.387 55.000 0.00 0.00 32.73 3.61 F
2886 3558 1.737838 TCATGTCAACCGAATCTGGC 58.262 50.000 0.00 0.00 0.00 4.85 F
4599 5302 0.609406 GAGGGCCCCTGTTTGACTTC 60.609 60.000 21.43 0.34 31.76 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2688 3360 1.216064 CTGGGATGATCCAAGGGTCA 58.784 55.000 14.36 4.24 38.64 4.02 R
4550 5246 1.266718 CCTAGCAAGCAAAAGCGACAA 59.733 47.619 0.00 0.00 35.48 3.18 R
4599 5302 1.631405 TGCCAACAAATCTCCCCTTG 58.369 50.000 0.00 0.00 0.00 3.61 R
4782 5507 5.458041 TTCCTTTGAGAAGATGCAAAAGG 57.542 39.130 14.92 14.92 34.01 3.11 R
5723 6472 0.033228 ATGCATCAGTCGCTCTAGCC 59.967 55.000 0.00 0.00 37.91 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 172 0.878523 TGGTAGTGTGTTGTCAGCGC 60.879 55.000 0.00 0.00 0.00 5.92
173 175 4.666532 GTGTGTTGTCAGCGCCGC 62.667 66.667 2.29 0.00 0.00 6.53
273 783 0.736053 CCTCCAGTGTCGCTAGAGTC 59.264 60.000 7.87 0.00 32.16 3.36
424 1094 0.931005 CCACGCCGCTCTAAAATCTC 59.069 55.000 0.00 0.00 0.00 2.75
443 1113 1.202348 TCTCGTGTAGCATCAGGTGTG 59.798 52.381 0.00 0.00 0.00 3.82
736 1406 3.724257 GGTTGCGTTCTTTCTTTTTCGAG 59.276 43.478 0.00 0.00 0.00 4.04
854 1524 0.249114 TTACGCACTCTGTTCACGCA 60.249 50.000 0.00 0.00 0.00 5.24
1074 1744 2.354821 GCTGCAAATTAAGAGGGGTACG 59.645 50.000 0.00 0.00 0.00 3.67
1089 1759 2.289072 GGGTACGGATGATGGTCTCATG 60.289 54.545 0.00 0.00 44.83 3.07
1145 1815 4.826556 ACTTGCATTGGTAGAGAAGAGAC 58.173 43.478 0.00 0.00 0.00 3.36
1146 1816 4.284490 ACTTGCATTGGTAGAGAAGAGACA 59.716 41.667 0.00 0.00 0.00 3.41
1195 1865 7.826744 TGCCAACACTTCATTATTCTACACATA 59.173 33.333 0.00 0.00 0.00 2.29
1550 2221 3.392882 CCAGGTTCATTTTGCAAGGTTC 58.607 45.455 0.00 0.00 0.00 3.62
1604 2275 6.375455 TCAATGATCTTAAAAGAGAAGGCCAC 59.625 38.462 5.01 0.00 38.66 5.01
1649 2320 8.965172 GCTGCTAATCATCATTCACTTAATTTG 58.035 33.333 0.00 0.00 0.00 2.32
1825 2496 5.016051 GTGAAACTCTATCATCAGCTGGA 57.984 43.478 15.13 4.27 0.00 3.86
2026 2697 7.818446 TGTAACTATATGCACCGAAAAGTAACA 59.182 33.333 0.00 0.00 0.00 2.41
2151 2822 4.202151 ACTTTGTTGGCATGAACCTTTCTC 60.202 41.667 0.00 0.00 0.00 2.87
2638 3310 4.808414 TTGTGATAGTCTCCTGAACCTG 57.192 45.455 0.00 0.00 0.00 4.00
2679 3351 3.941483 CTCAGTTCTCCACACAACTTTGT 59.059 43.478 0.00 0.00 43.36 2.83
2686 3358 1.333619 CCACACAACTTTGTCCTTCGG 59.666 52.381 0.00 0.00 39.91 4.30
2687 3359 2.285083 CACACAACTTTGTCCTTCGGA 58.715 47.619 0.00 0.00 39.91 4.55
2688 3360 2.878406 CACACAACTTTGTCCTTCGGAT 59.122 45.455 0.00 0.00 39.91 4.18
2689 3361 2.878406 ACACAACTTTGTCCTTCGGATG 59.122 45.455 0.00 0.00 39.91 3.51
2690 3362 3.138304 CACAACTTTGTCCTTCGGATGA 58.862 45.455 0.00 0.00 39.91 2.92
2691 3363 3.058914 CACAACTTTGTCCTTCGGATGAC 60.059 47.826 0.00 0.00 39.91 3.06
2692 3364 2.474410 ACTTTGTCCTTCGGATGACC 57.526 50.000 0.00 0.00 32.73 4.02
2693 3365 1.003233 ACTTTGTCCTTCGGATGACCC 59.997 52.381 0.00 0.00 32.73 4.46
2694 3366 1.279271 CTTTGTCCTTCGGATGACCCT 59.721 52.381 0.00 0.00 32.73 4.34
2695 3367 1.358152 TTGTCCTTCGGATGACCCTT 58.642 50.000 0.00 0.00 32.73 3.95
2696 3368 0.613260 TGTCCTTCGGATGACCCTTG 59.387 55.000 0.00 0.00 32.73 3.61
2717 3389 4.429505 TGGATCATCCCAGGATAACTAGG 58.570 47.826 0.00 0.00 35.03 3.02
2726 3398 4.484912 CCAGGATAACTAGGCTTAGAGGT 58.515 47.826 10.24 0.00 0.00 3.85
2886 3558 1.737838 TCATGTCAACCGAATCTGGC 58.262 50.000 0.00 0.00 0.00 4.85
2940 3612 3.936453 GCCAACATCGATACAGTAAACCA 59.064 43.478 0.00 0.00 0.00 3.67
3074 3746 2.614057 ACTAATAACTGCCAATCTGCGC 59.386 45.455 0.00 0.00 0.00 6.09
3094 3766 5.069914 TGCGCTTAATCTCCCTGTCTAATAA 59.930 40.000 9.73 0.00 0.00 1.40
3103 3775 2.205074 CCTGTCTAATAACAGCGCCAG 58.795 52.381 2.29 0.00 44.34 4.85
3261 3933 6.721571 AGTACAATTACATGTCCACTTTCG 57.278 37.500 0.00 0.00 34.75 3.46
3390 4062 2.910482 GCTGCGTATGTGTGATGTTTTG 59.090 45.455 0.00 0.00 0.00 2.44
3511 4183 2.110213 TGAACACGTGGCCAGACC 59.890 61.111 21.57 0.00 39.84 3.85
3803 4482 7.088905 TCGAAGAGACTTTTGGTGAAGTATAC 58.911 38.462 0.00 0.00 39.84 1.47
3834 4513 2.179517 GTGTCTGGAGCCGACTCG 59.820 66.667 10.98 0.00 44.48 4.18
3882 4561 3.374988 TCAAGTTGTTGTCTCACTTGCTG 59.625 43.478 2.11 0.00 38.06 4.41
4245 4934 5.717078 ATGTTGCTCTTGTTGATGTCAAT 57.283 34.783 0.00 0.00 38.24 2.57
4448 5137 9.355215 CAGTTGTACAATCACTAAGGTTAGTAG 57.645 37.037 12.26 0.00 41.82 2.57
4599 5302 0.609406 GAGGGCCCCTGTTTGACTTC 60.609 60.000 21.43 0.34 31.76 3.01
4871 5601 1.872952 CGTTGATGAAGTTGGCAGTGA 59.127 47.619 0.00 0.00 0.00 3.41
4935 5673 9.709495 TCTTTGATATTTTGCATAAAAACTGCT 57.291 25.926 0.00 0.00 40.51 4.24
4952 5690 6.867662 AACTGCTGATAACATTACTATGCC 57.132 37.500 0.00 0.00 35.03 4.40
5222 5960 2.550830 ACCTGTTGGCTGTCTTGTAG 57.449 50.000 0.00 0.00 36.63 2.74
5223 5961 1.160137 CCTGTTGGCTGTCTTGTAGC 58.840 55.000 0.00 0.00 40.41 3.58
5506 6244 3.682696 CCCCTTCTACCTTGTAACCAAC 58.317 50.000 0.00 0.00 0.00 3.77
5630 6379 4.069304 CTCCGTTTCAAATTCACCCTGTA 58.931 43.478 0.00 0.00 0.00 2.74
5632 6381 3.364565 CCGTTTCAAATTCACCCTGTACG 60.365 47.826 0.00 0.00 0.00 3.67
5633 6382 3.561503 GTTTCAAATTCACCCTGTACGC 58.438 45.455 0.00 0.00 0.00 4.42
5635 6384 2.695359 TCAAATTCACCCTGTACGCTC 58.305 47.619 0.00 0.00 0.00 5.03
5636 6385 2.037902 TCAAATTCACCCTGTACGCTCA 59.962 45.455 0.00 0.00 0.00 4.26
5637 6386 2.811431 CAAATTCACCCTGTACGCTCAA 59.189 45.455 0.00 0.00 0.00 3.02
5638 6387 3.350219 AATTCACCCTGTACGCTCAAT 57.650 42.857 0.00 0.00 0.00 2.57
5639 6388 2.851263 TTCACCCTGTACGCTCAATT 57.149 45.000 0.00 0.00 0.00 2.32
5640 6389 2.851263 TCACCCTGTACGCTCAATTT 57.149 45.000 0.00 0.00 0.00 1.82
5641 6390 2.422597 TCACCCTGTACGCTCAATTTG 58.577 47.619 0.00 0.00 0.00 2.32
5642 6391 2.151202 CACCCTGTACGCTCAATTTGT 58.849 47.619 0.00 0.00 0.00 2.83
5643 6392 3.007074 TCACCCTGTACGCTCAATTTGTA 59.993 43.478 0.00 0.00 0.00 2.41
5644 6393 3.124636 CACCCTGTACGCTCAATTTGTAC 59.875 47.826 0.00 0.00 39.08 2.90
5645 6394 3.007614 ACCCTGTACGCTCAATTTGTACT 59.992 43.478 0.00 0.00 39.30 2.73
5646 6395 3.370978 CCCTGTACGCTCAATTTGTACTG 59.629 47.826 0.00 3.24 39.30 2.74
5647 6396 3.181520 CCTGTACGCTCAATTTGTACTGC 60.182 47.826 0.00 0.00 39.30 4.40
5648 6397 3.659786 TGTACGCTCAATTTGTACTGCT 58.340 40.909 0.00 0.00 39.30 4.24
5649 6398 3.431912 TGTACGCTCAATTTGTACTGCTG 59.568 43.478 0.00 0.00 39.30 4.41
5650 6399 2.494059 ACGCTCAATTTGTACTGCTGT 58.506 42.857 0.66 0.66 0.00 4.40
5651 6400 2.480419 ACGCTCAATTTGTACTGCTGTC 59.520 45.455 0.00 0.00 0.00 3.51
5652 6401 2.159653 CGCTCAATTTGTACTGCTGTCC 60.160 50.000 0.00 0.00 0.00 4.02
5653 6402 2.813754 GCTCAATTTGTACTGCTGTCCA 59.186 45.455 0.00 0.00 0.00 4.02
5654 6403 3.441572 GCTCAATTTGTACTGCTGTCCAT 59.558 43.478 0.00 0.00 0.00 3.41
5655 6404 4.082571 GCTCAATTTGTACTGCTGTCCATT 60.083 41.667 0.00 0.00 0.00 3.16
5656 6405 5.375417 TCAATTTGTACTGCTGTCCATTG 57.625 39.130 0.00 5.36 0.00 2.82
5657 6406 5.069318 TCAATTTGTACTGCTGTCCATTGA 58.931 37.500 0.00 7.44 0.00 2.57
5658 6407 5.048782 TCAATTTGTACTGCTGTCCATTGAC 60.049 40.000 0.00 0.00 42.12 3.18
5670 6419 5.856126 TGTCCATTGACATCGTACTTTTC 57.144 39.130 0.00 0.00 46.40 2.29
5671 6420 5.301555 TGTCCATTGACATCGTACTTTTCA 58.698 37.500 0.00 0.00 46.40 2.69
5672 6421 5.937540 TGTCCATTGACATCGTACTTTTCAT 59.062 36.000 0.00 0.00 46.40 2.57
5673 6422 6.092122 TGTCCATTGACATCGTACTTTTCATC 59.908 38.462 0.00 0.00 46.40 2.92
5674 6423 5.290885 TCCATTGACATCGTACTTTTCATCG 59.709 40.000 0.00 0.00 0.00 3.84
5675 6424 4.577687 TTGACATCGTACTTTTCATCGC 57.422 40.909 0.00 0.00 0.00 4.58
5676 6425 2.927477 TGACATCGTACTTTTCATCGCC 59.073 45.455 0.00 0.00 0.00 5.54
5677 6426 1.924524 ACATCGTACTTTTCATCGCCG 59.075 47.619 0.00 0.00 0.00 6.46
5678 6427 1.924524 CATCGTACTTTTCATCGCCGT 59.075 47.619 0.00 0.00 0.00 5.68
5679 6428 1.342555 TCGTACTTTTCATCGCCGTG 58.657 50.000 0.00 0.00 0.00 4.94
5680 6429 0.368907 CGTACTTTTCATCGCCGTGG 59.631 55.000 0.00 0.00 0.00 4.94
5681 6430 1.435577 GTACTTTTCATCGCCGTGGT 58.564 50.000 0.00 0.00 0.00 4.16
5682 6431 2.609350 GTACTTTTCATCGCCGTGGTA 58.391 47.619 0.00 0.00 0.00 3.25
5683 6432 2.172851 ACTTTTCATCGCCGTGGTAA 57.827 45.000 0.00 0.00 0.00 2.85
5684 6433 2.496111 ACTTTTCATCGCCGTGGTAAA 58.504 42.857 0.00 0.00 0.00 2.01
5685 6434 2.224784 ACTTTTCATCGCCGTGGTAAAC 59.775 45.455 0.00 0.00 0.00 2.01
5686 6435 1.880271 TTTCATCGCCGTGGTAAACA 58.120 45.000 0.00 0.00 0.00 2.83
5687 6436 2.102070 TTCATCGCCGTGGTAAACAT 57.898 45.000 0.00 0.00 0.00 2.71
5688 6437 1.647346 TCATCGCCGTGGTAAACATC 58.353 50.000 0.00 0.00 0.00 3.06
5689 6438 1.206132 TCATCGCCGTGGTAAACATCT 59.794 47.619 0.00 0.00 0.00 2.90
5690 6439 1.327460 CATCGCCGTGGTAAACATCTG 59.673 52.381 0.00 0.00 0.00 2.90
5691 6440 0.390603 TCGCCGTGGTAAACATCTGG 60.391 55.000 0.00 0.00 0.00 3.86
5692 6441 1.366111 CGCCGTGGTAAACATCTGGG 61.366 60.000 0.00 0.00 0.00 4.45
5693 6442 1.654023 GCCGTGGTAAACATCTGGGC 61.654 60.000 0.00 0.00 0.00 5.36
5694 6443 1.366111 CCGTGGTAAACATCTGGGCG 61.366 60.000 0.00 0.00 0.00 6.13
5695 6444 1.800681 GTGGTAAACATCTGGGCGC 59.199 57.895 0.00 0.00 0.00 6.53
5696 6445 0.676782 GTGGTAAACATCTGGGCGCT 60.677 55.000 7.64 0.00 0.00 5.92
5697 6446 0.392461 TGGTAAACATCTGGGCGCTC 60.392 55.000 7.64 2.47 0.00 5.03
5698 6447 1.429148 GGTAAACATCTGGGCGCTCG 61.429 60.000 7.64 0.00 0.00 5.03
5699 6448 0.739813 GTAAACATCTGGGCGCTCGT 60.740 55.000 7.64 0.00 0.00 4.18
5700 6449 0.036765 TAAACATCTGGGCGCTCGTT 60.037 50.000 7.64 0.00 0.00 3.85
5701 6450 1.298859 AAACATCTGGGCGCTCGTTC 61.299 55.000 7.64 0.00 0.00 3.95
5702 6451 2.172483 AACATCTGGGCGCTCGTTCT 62.172 55.000 7.64 0.00 0.00 3.01
5703 6452 1.448540 CATCTGGGCGCTCGTTCTT 60.449 57.895 7.64 0.00 0.00 2.52
5704 6453 1.153549 ATCTGGGCGCTCGTTCTTC 60.154 57.895 7.64 0.00 0.00 2.87
5705 6454 1.608717 ATCTGGGCGCTCGTTCTTCT 61.609 55.000 7.64 0.00 0.00 2.85
5706 6455 2.048222 TGGGCGCTCGTTCTTCTG 60.048 61.111 7.64 0.00 0.00 3.02
5707 6456 2.048127 GGGCGCTCGTTCTTCTGT 60.048 61.111 7.64 0.00 0.00 3.41
5708 6457 1.214589 GGGCGCTCGTTCTTCTGTA 59.785 57.895 7.64 0.00 0.00 2.74
5709 6458 1.077089 GGGCGCTCGTTCTTCTGTAC 61.077 60.000 7.64 0.00 0.00 2.90
5710 6459 1.403972 GGCGCTCGTTCTTCTGTACG 61.404 60.000 7.64 0.00 38.13 3.67
5711 6460 1.981668 CGCTCGTTCTTCTGTACGC 59.018 57.895 0.00 0.00 37.00 4.42
5712 6461 1.403972 CGCTCGTTCTTCTGTACGCC 61.404 60.000 0.00 0.00 37.00 5.68
5713 6462 1.077089 GCTCGTTCTTCTGTACGCCC 61.077 60.000 0.00 0.00 37.00 6.13
5714 6463 0.797249 CTCGTTCTTCTGTACGCCCG 60.797 60.000 0.00 0.00 37.00 6.13
5715 6464 1.080974 CGTTCTTCTGTACGCCCGT 60.081 57.895 0.00 0.00 30.94 5.28
5716 6465 1.342082 CGTTCTTCTGTACGCCCGTG 61.342 60.000 3.22 0.00 30.94 4.94
5717 6466 0.319297 GTTCTTCTGTACGCCCGTGT 60.319 55.000 3.22 0.00 0.00 4.49
5718 6467 1.068333 GTTCTTCTGTACGCCCGTGTA 60.068 52.381 3.22 0.00 0.00 2.90
5719 6468 1.246649 TCTTCTGTACGCCCGTGTAA 58.753 50.000 3.22 0.00 0.00 2.41
5720 6469 1.820519 TCTTCTGTACGCCCGTGTAAT 59.179 47.619 3.22 0.00 0.00 1.89
5721 6470 2.159338 TCTTCTGTACGCCCGTGTAATC 60.159 50.000 3.22 0.00 0.00 1.75
5722 6471 0.099259 TCTGTACGCCCGTGTAATCG 59.901 55.000 3.22 0.00 0.00 3.34
5730 6479 3.867723 CCGTGTAATCGGGCTAGAG 57.132 57.895 0.00 0.00 45.88 2.43
5731 6480 0.318784 CCGTGTAATCGGGCTAGAGC 60.319 60.000 0.00 0.00 45.88 4.09
5732 6481 0.660595 CGTGTAATCGGGCTAGAGCG 60.661 60.000 0.00 0.00 43.26 5.03
5733 6482 0.666913 GTGTAATCGGGCTAGAGCGA 59.333 55.000 0.00 0.00 43.26 4.93
5734 6483 0.666913 TGTAATCGGGCTAGAGCGAC 59.333 55.000 0.00 0.00 43.26 5.19
5735 6484 0.953003 GTAATCGGGCTAGAGCGACT 59.047 55.000 0.00 0.00 43.26 4.18
5736 6485 0.952280 TAATCGGGCTAGAGCGACTG 59.048 55.000 0.00 0.00 43.26 3.51
5737 6486 0.752009 AATCGGGCTAGAGCGACTGA 60.752 55.000 0.00 0.00 43.26 3.41
5738 6487 0.538516 ATCGGGCTAGAGCGACTGAT 60.539 55.000 0.00 0.00 43.26 2.90
5739 6488 1.007964 CGGGCTAGAGCGACTGATG 60.008 63.158 0.00 0.00 43.26 3.07
5740 6489 1.300542 GGGCTAGAGCGACTGATGC 60.301 63.158 0.00 0.00 43.26 3.91
5741 6490 1.439228 GGCTAGAGCGACTGATGCA 59.561 57.895 0.00 0.00 43.26 3.96
5742 6491 0.033228 GGCTAGAGCGACTGATGCAT 59.967 55.000 0.00 0.00 43.26 3.96
5758 6507 4.201122 ATGGGCCAGCCTAGCAGC 62.201 66.667 13.78 0.00 36.10 5.25
5817 6566 2.203280 TGTTCGTGGGTTGGCAGG 60.203 61.111 0.00 0.00 0.00 4.85
5818 6567 2.983592 GTTCGTGGGTTGGCAGGG 60.984 66.667 0.00 0.00 0.00 4.45
5819 6568 4.966787 TTCGTGGGTTGGCAGGGC 62.967 66.667 0.00 0.00 0.00 5.19
5823 6572 4.531426 TGGGTTGGCAGGGCGTTT 62.531 61.111 0.00 0.00 0.00 3.60
5824 6573 3.230990 GGGTTGGCAGGGCGTTTT 61.231 61.111 0.00 0.00 0.00 2.43
5825 6574 2.802724 GGGTTGGCAGGGCGTTTTT 61.803 57.895 0.00 0.00 0.00 1.94
5845 6594 4.379339 TTTTACTGTCCTTGTTTGCACC 57.621 40.909 0.00 0.00 0.00 5.01
5846 6595 1.975660 TACTGTCCTTGTTTGCACCC 58.024 50.000 0.00 0.00 0.00 4.61
5847 6596 0.033601 ACTGTCCTTGTTTGCACCCA 60.034 50.000 0.00 0.00 0.00 4.51
5848 6597 0.670162 CTGTCCTTGTTTGCACCCAG 59.330 55.000 0.00 0.00 0.00 4.45
5849 6598 1.363807 GTCCTTGTTTGCACCCAGC 59.636 57.895 0.00 0.00 45.96 4.85
5889 6638 4.742201 CGGCGGGCCCATCTATCG 62.742 72.222 24.92 11.57 0.00 2.92
5890 6639 4.394712 GGCGGGCCCATCTATCGG 62.395 72.222 24.92 3.18 0.00 4.18
5891 6640 3.626924 GCGGGCCCATCTATCGGT 61.627 66.667 24.92 0.00 0.00 4.69
5892 6641 2.657237 CGGGCCCATCTATCGGTC 59.343 66.667 24.92 0.00 0.00 4.79
5893 6642 1.908793 CGGGCCCATCTATCGGTCT 60.909 63.158 24.92 0.00 0.00 3.85
5894 6643 1.878656 CGGGCCCATCTATCGGTCTC 61.879 65.000 24.92 0.00 0.00 3.36
5895 6644 1.587054 GGCCCATCTATCGGTCTCG 59.413 63.158 0.00 0.00 37.82 4.04
5896 6645 1.179814 GGCCCATCTATCGGTCTCGT 61.180 60.000 0.00 0.00 37.69 4.18
5897 6646 0.039074 GCCCATCTATCGGTCTCGTG 60.039 60.000 0.00 0.00 37.69 4.35
5898 6647 0.598562 CCCATCTATCGGTCTCGTGG 59.401 60.000 0.00 0.00 37.69 4.94
5899 6648 0.598562 CCATCTATCGGTCTCGTGGG 59.401 60.000 0.00 0.00 37.69 4.61
5900 6649 1.319541 CATCTATCGGTCTCGTGGGT 58.680 55.000 0.00 0.00 37.69 4.51
5901 6650 1.001268 CATCTATCGGTCTCGTGGGTG 60.001 57.143 0.00 0.00 37.69 4.61
5902 6651 0.034767 TCTATCGGTCTCGTGGGTGT 60.035 55.000 0.00 0.00 37.69 4.16
5903 6652 0.100682 CTATCGGTCTCGTGGGTGTG 59.899 60.000 0.00 0.00 37.69 3.82
5904 6653 0.609957 TATCGGTCTCGTGGGTGTGT 60.610 55.000 0.00 0.00 37.69 3.72
5905 6654 2.154798 ATCGGTCTCGTGGGTGTGTG 62.155 60.000 0.00 0.00 37.69 3.82
5906 6655 2.030562 GGTCTCGTGGGTGTGTGG 59.969 66.667 0.00 0.00 0.00 4.17
5907 6656 2.665185 GTCTCGTGGGTGTGTGGC 60.665 66.667 0.00 0.00 0.00 5.01
5908 6657 2.842462 TCTCGTGGGTGTGTGGCT 60.842 61.111 0.00 0.00 0.00 4.75
5909 6658 2.357517 CTCGTGGGTGTGTGGCTC 60.358 66.667 0.00 0.00 0.00 4.70
5910 6659 3.157949 TCGTGGGTGTGTGGCTCA 61.158 61.111 0.00 0.00 0.00 4.26
5911 6660 2.666190 CGTGGGTGTGTGGCTCAG 60.666 66.667 0.00 0.00 0.00 3.35
5912 6661 2.828868 GTGGGTGTGTGGCTCAGA 59.171 61.111 0.00 0.00 0.00 3.27
5913 6662 1.302033 GTGGGTGTGTGGCTCAGAG 60.302 63.158 0.00 0.00 0.00 3.35
5914 6663 1.459348 TGGGTGTGTGGCTCAGAGA 60.459 57.895 0.00 0.00 0.00 3.10
5915 6664 1.294780 GGGTGTGTGGCTCAGAGAG 59.705 63.158 0.00 0.00 0.00 3.20
5916 6665 1.188219 GGGTGTGTGGCTCAGAGAGA 61.188 60.000 0.00 0.00 0.00 3.10
5925 6674 1.064621 CTCAGAGAGAGCAGCGAGC 59.935 63.158 0.00 0.00 46.19 5.03
5954 6703 4.742201 GCAAGCGGGCACGAGAGA 62.742 66.667 15.48 0.00 44.60 3.10
5955 6704 2.048222 CAAGCGGGCACGAGAGAA 60.048 61.111 15.48 0.00 44.60 2.87
5956 6705 1.667830 CAAGCGGGCACGAGAGAAA 60.668 57.895 15.48 0.00 44.60 2.52
5957 6706 1.070786 AAGCGGGCACGAGAGAAAA 59.929 52.632 15.48 0.00 44.60 2.29
5958 6707 0.951040 AAGCGGGCACGAGAGAAAAG 60.951 55.000 15.48 0.00 44.60 2.27
5959 6708 1.374252 GCGGGCACGAGAGAAAAGA 60.374 57.895 15.48 0.00 44.60 2.52
5960 6709 0.949105 GCGGGCACGAGAGAAAAGAA 60.949 55.000 15.48 0.00 44.60 2.52
5961 6710 1.508632 CGGGCACGAGAGAAAAGAAA 58.491 50.000 0.00 0.00 44.60 2.52
5962 6711 1.461127 CGGGCACGAGAGAAAAGAAAG 59.539 52.381 0.00 0.00 44.60 2.62
5963 6712 1.807142 GGGCACGAGAGAAAAGAAAGG 59.193 52.381 0.00 0.00 0.00 3.11
5964 6713 1.807142 GGCACGAGAGAAAAGAAAGGG 59.193 52.381 0.00 0.00 0.00 3.95
5965 6714 1.807142 GCACGAGAGAAAAGAAAGGGG 59.193 52.381 0.00 0.00 0.00 4.79
5966 6715 2.427506 CACGAGAGAAAAGAAAGGGGG 58.572 52.381 0.00 0.00 0.00 5.40
5967 6716 2.038557 CACGAGAGAAAAGAAAGGGGGA 59.961 50.000 0.00 0.00 0.00 4.81
5968 6717 2.913617 ACGAGAGAAAAGAAAGGGGGAT 59.086 45.455 0.00 0.00 0.00 3.85
5969 6718 3.330998 ACGAGAGAAAAGAAAGGGGGATT 59.669 43.478 0.00 0.00 0.00 3.01
5970 6719 4.202577 ACGAGAGAAAAGAAAGGGGGATTT 60.203 41.667 0.00 0.00 0.00 2.17
5971 6720 4.156739 CGAGAGAAAAGAAAGGGGGATTTG 59.843 45.833 0.00 0.00 0.00 2.32
5972 6721 5.325239 GAGAGAAAAGAAAGGGGGATTTGA 58.675 41.667 0.00 0.00 0.00 2.69
5973 6722 5.908590 AGAGAAAAGAAAGGGGGATTTGAT 58.091 37.500 0.00 0.00 0.00 2.57
5974 6723 6.326161 AGAGAAAAGAAAGGGGGATTTGATT 58.674 36.000 0.00 0.00 0.00 2.57
5975 6724 6.789457 AGAGAAAAGAAAGGGGGATTTGATTT 59.211 34.615 0.00 0.00 0.00 2.17
5976 6725 7.293299 AGAGAAAAGAAAGGGGGATTTGATTTT 59.707 33.333 0.00 0.00 0.00 1.82
5977 6726 7.815383 AGAAAAGAAAGGGGGATTTGATTTTT 58.185 30.769 0.00 0.00 0.00 1.94
5996 6745 2.977772 TTTGCCACCACTTTCTTTGG 57.022 45.000 0.00 0.00 40.32 3.28
5997 6746 2.151502 TTGCCACCACTTTCTTTGGA 57.848 45.000 0.00 0.00 37.58 3.53
5998 6747 1.398692 TGCCACCACTTTCTTTGGAC 58.601 50.000 0.00 0.00 37.58 4.02
5999 6748 1.064017 TGCCACCACTTTCTTTGGACT 60.064 47.619 0.00 0.00 37.58 3.85
6000 6749 2.031870 GCCACCACTTTCTTTGGACTT 58.968 47.619 0.00 0.00 37.58 3.01
6001 6750 2.430694 GCCACCACTTTCTTTGGACTTT 59.569 45.455 0.00 0.00 37.58 2.66
6002 6751 3.737972 GCCACCACTTTCTTTGGACTTTG 60.738 47.826 0.00 0.00 37.58 2.77
6003 6752 3.699038 CCACCACTTTCTTTGGACTTTGA 59.301 43.478 0.00 0.00 37.58 2.69
6004 6753 4.342092 CCACCACTTTCTTTGGACTTTGAT 59.658 41.667 0.00 0.00 37.58 2.57
6005 6754 5.534654 CCACCACTTTCTTTGGACTTTGATA 59.465 40.000 0.00 0.00 37.58 2.15
6006 6755 6.040391 CCACCACTTTCTTTGGACTTTGATAA 59.960 38.462 0.00 0.00 37.58 1.75
6007 6756 7.255942 CCACCACTTTCTTTGGACTTTGATAAT 60.256 37.037 0.00 0.00 37.58 1.28
6008 6757 8.143835 CACCACTTTCTTTGGACTTTGATAATT 58.856 33.333 0.00 0.00 37.58 1.40
6009 6758 8.704668 ACCACTTTCTTTGGACTTTGATAATTT 58.295 29.630 0.00 0.00 37.58 1.82
6010 6759 8.981647 CCACTTTCTTTGGACTTTGATAATTTG 58.018 33.333 0.00 0.00 36.02 2.32
6011 6760 8.490355 CACTTTCTTTGGACTTTGATAATTTGC 58.510 33.333 0.00 0.00 0.00 3.68
6012 6761 7.657354 ACTTTCTTTGGACTTTGATAATTTGCC 59.343 33.333 0.00 0.00 0.00 4.52
6013 6762 6.662865 TCTTTGGACTTTGATAATTTGCCA 57.337 33.333 0.00 0.00 0.00 4.92
6014 6763 6.454795 TCTTTGGACTTTGATAATTTGCCAC 58.545 36.000 0.00 0.00 0.00 5.01
6015 6764 4.799564 TGGACTTTGATAATTTGCCACC 57.200 40.909 0.00 0.00 0.00 4.61
6016 6765 3.513515 TGGACTTTGATAATTTGCCACCC 59.486 43.478 0.00 0.00 0.00 4.61
6017 6766 3.769300 GGACTTTGATAATTTGCCACCCT 59.231 43.478 0.00 0.00 0.00 4.34
6018 6767 4.222810 GGACTTTGATAATTTGCCACCCTT 59.777 41.667 0.00 0.00 0.00 3.95
6019 6768 5.279960 GGACTTTGATAATTTGCCACCCTTT 60.280 40.000 0.00 0.00 0.00 3.11
6020 6769 6.071051 GGACTTTGATAATTTGCCACCCTTTA 60.071 38.462 0.00 0.00 0.00 1.85
6021 6770 6.697395 ACTTTGATAATTTGCCACCCTTTAC 58.303 36.000 0.00 0.00 0.00 2.01
6022 6771 6.496911 ACTTTGATAATTTGCCACCCTTTACT 59.503 34.615 0.00 0.00 0.00 2.24
6023 6772 6.926630 TTGATAATTTGCCACCCTTTACTT 57.073 33.333 0.00 0.00 0.00 2.24
6024 6773 6.926630 TGATAATTTGCCACCCTTTACTTT 57.073 33.333 0.00 0.00 0.00 2.66
6025 6774 6.696411 TGATAATTTGCCACCCTTTACTTTG 58.304 36.000 0.00 0.00 0.00 2.77
6026 6775 6.268847 TGATAATTTGCCACCCTTTACTTTGT 59.731 34.615 0.00 0.00 0.00 2.83
6027 6776 7.451877 TGATAATTTGCCACCCTTTACTTTGTA 59.548 33.333 0.00 0.00 0.00 2.41
6028 6777 6.487299 AATTTGCCACCCTTTACTTTGTAA 57.513 33.333 0.00 0.00 0.00 2.41
6029 6778 6.680148 ATTTGCCACCCTTTACTTTGTAAT 57.320 33.333 0.00 0.00 0.00 1.89
6030 6779 6.487299 TTTGCCACCCTTTACTTTGTAATT 57.513 33.333 0.00 0.00 0.00 1.40
6031 6780 5.461032 TGCCACCCTTTACTTTGTAATTG 57.539 39.130 0.00 0.00 0.00 2.32
6032 6781 5.141182 TGCCACCCTTTACTTTGTAATTGA 58.859 37.500 0.00 0.00 0.00 2.57
6033 6782 5.777732 TGCCACCCTTTACTTTGTAATTGAT 59.222 36.000 0.00 0.00 0.00 2.57
6034 6783 6.071616 TGCCACCCTTTACTTTGTAATTGATC 60.072 38.462 0.00 0.00 0.00 2.92
6035 6784 6.152831 GCCACCCTTTACTTTGTAATTGATCT 59.847 38.462 0.00 0.00 0.00 2.75
6036 6785 7.538575 CCACCCTTTACTTTGTAATTGATCTG 58.461 38.462 0.00 0.00 0.00 2.90
6037 6786 7.393234 CCACCCTTTACTTTGTAATTGATCTGA 59.607 37.037 0.00 0.00 0.00 3.27
6038 6787 8.960591 CACCCTTTACTTTGTAATTGATCTGAT 58.039 33.333 0.00 0.00 0.00 2.90
6039 6788 8.960591 ACCCTTTACTTTGTAATTGATCTGATG 58.039 33.333 0.00 0.00 0.00 3.07
6040 6789 9.177608 CCCTTTACTTTGTAATTGATCTGATGA 57.822 33.333 0.00 0.00 0.00 2.92
6041 6790 9.994432 CCTTTACTTTGTAATTGATCTGATGAC 57.006 33.333 0.00 0.00 0.00 3.06
6044 6793 9.725019 TTACTTTGTAATTGATCTGATGACACT 57.275 29.630 0.00 0.00 0.00 3.55
6045 6794 8.261492 ACTTTGTAATTGATCTGATGACACTC 57.739 34.615 0.00 0.00 0.00 3.51
6046 6795 8.099537 ACTTTGTAATTGATCTGATGACACTCT 58.900 33.333 0.00 0.00 0.00 3.24
6047 6796 8.853077 TTTGTAATTGATCTGATGACACTCTT 57.147 30.769 0.00 0.00 0.00 2.85
6048 6797 8.853077 TTGTAATTGATCTGATGACACTCTTT 57.147 30.769 0.00 0.00 0.00 2.52
6049 6798 8.853077 TGTAATTGATCTGATGACACTCTTTT 57.147 30.769 0.00 0.00 0.00 2.27
6050 6799 8.724229 TGTAATTGATCTGATGACACTCTTTTG 58.276 33.333 0.00 0.00 0.00 2.44
6051 6800 7.756395 AATTGATCTGATGACACTCTTTTGT 57.244 32.000 0.00 0.00 0.00 2.83
6052 6801 7.756395 ATTGATCTGATGACACTCTTTTGTT 57.244 32.000 0.00 0.00 0.00 2.83
6053 6802 7.572523 TTGATCTGATGACACTCTTTTGTTT 57.427 32.000 0.00 0.00 0.00 2.83
6054 6803 6.962686 TGATCTGATGACACTCTTTTGTTTG 58.037 36.000 0.00 0.00 0.00 2.93
6055 6804 5.756195 TCTGATGACACTCTTTTGTTTGG 57.244 39.130 0.00 0.00 0.00 3.28
6056 6805 5.436175 TCTGATGACACTCTTTTGTTTGGA 58.564 37.500 0.00 0.00 0.00 3.53
6057 6806 5.296780 TCTGATGACACTCTTTTGTTTGGAC 59.703 40.000 0.00 0.00 0.00 4.02
6058 6807 5.192927 TGATGACACTCTTTTGTTTGGACT 58.807 37.500 0.00 0.00 0.00 3.85
6059 6808 5.652014 TGATGACACTCTTTTGTTTGGACTT 59.348 36.000 0.00 0.00 0.00 3.01
6060 6809 5.975693 TGACACTCTTTTGTTTGGACTTT 57.024 34.783 0.00 0.00 0.00 2.66
6061 6810 5.708948 TGACACTCTTTTGTTTGGACTTTG 58.291 37.500 0.00 0.00 0.00 2.77
6062 6811 4.494484 ACACTCTTTTGTTTGGACTTTGC 58.506 39.130 0.00 0.00 0.00 3.68
6063 6812 4.220602 ACACTCTTTTGTTTGGACTTTGCT 59.779 37.500 0.00 0.00 0.00 3.91
6064 6813 5.417580 ACACTCTTTTGTTTGGACTTTGCTA 59.582 36.000 0.00 0.00 0.00 3.49
6065 6814 5.743872 CACTCTTTTGTTTGGACTTTGCTAC 59.256 40.000 0.00 0.00 0.00 3.58
6066 6815 5.652452 ACTCTTTTGTTTGGACTTTGCTACT 59.348 36.000 0.00 0.00 0.00 2.57
6067 6816 6.152831 ACTCTTTTGTTTGGACTTTGCTACTT 59.847 34.615 0.00 0.00 0.00 2.24
6068 6817 6.930731 TCTTTTGTTTGGACTTTGCTACTTT 58.069 32.000 0.00 0.00 0.00 2.66
6069 6818 6.811170 TCTTTTGTTTGGACTTTGCTACTTTG 59.189 34.615 0.00 0.00 0.00 2.77
6070 6819 4.040445 TGTTTGGACTTTGCTACTTTGC 57.960 40.909 0.00 0.00 0.00 3.68
6071 6820 3.181480 TGTTTGGACTTTGCTACTTTGCC 60.181 43.478 0.00 0.00 0.00 4.52
6072 6821 1.616159 TGGACTTTGCTACTTTGCCC 58.384 50.000 0.00 0.00 0.00 5.36
6073 6822 1.144913 TGGACTTTGCTACTTTGCCCT 59.855 47.619 0.00 0.00 0.00 5.19
6074 6823 1.813178 GGACTTTGCTACTTTGCCCTC 59.187 52.381 0.00 0.00 0.00 4.30
6075 6824 2.553247 GGACTTTGCTACTTTGCCCTCT 60.553 50.000 0.00 0.00 0.00 3.69
6076 6825 2.485814 GACTTTGCTACTTTGCCCTCTG 59.514 50.000 0.00 0.00 0.00 3.35
6077 6826 2.158608 ACTTTGCTACTTTGCCCTCTGT 60.159 45.455 0.00 0.00 0.00 3.41
6078 6827 2.185004 TTGCTACTTTGCCCTCTGTC 57.815 50.000 0.00 0.00 0.00 3.51
6079 6828 1.055849 TGCTACTTTGCCCTCTGTCA 58.944 50.000 0.00 0.00 0.00 3.58
6080 6829 1.002430 TGCTACTTTGCCCTCTGTCAG 59.998 52.381 0.00 0.00 0.00 3.51
6081 6830 1.677217 GCTACTTTGCCCTCTGTCAGG 60.677 57.143 0.00 0.00 43.01 3.86
6082 6831 1.625818 CTACTTTGCCCTCTGTCAGGT 59.374 52.381 0.00 0.00 41.51 4.00
6083 6832 0.109342 ACTTTGCCCTCTGTCAGGTG 59.891 55.000 0.00 0.00 41.51 4.00
6084 6833 0.607489 CTTTGCCCTCTGTCAGGTGG 60.607 60.000 0.00 2.22 41.51 4.61
6085 6834 2.067932 TTTGCCCTCTGTCAGGTGGG 62.068 60.000 20.72 20.72 41.51 4.61
6086 6835 2.930562 GCCCTCTGTCAGGTGGGT 60.931 66.667 23.65 0.00 41.51 4.51
6087 6836 2.960688 GCCCTCTGTCAGGTGGGTC 61.961 68.421 23.65 16.08 41.51 4.46
6088 6837 2.294078 CCCTCTGTCAGGTGGGTCC 61.294 68.421 18.21 0.00 41.51 4.46
6096 6845 3.341270 AGGTGGGTCCTGCAACAA 58.659 55.556 0.00 0.00 46.19 2.83
6097 6846 1.618030 AGGTGGGTCCTGCAACAAA 59.382 52.632 0.00 0.00 46.19 2.83
6098 6847 0.188342 AGGTGGGTCCTGCAACAAAT 59.812 50.000 0.00 0.00 46.19 2.32
6099 6848 0.318120 GGTGGGTCCTGCAACAAATG 59.682 55.000 0.00 0.00 0.00 2.32
6100 6849 1.039856 GTGGGTCCTGCAACAAATGT 58.960 50.000 0.00 0.00 0.00 2.71
6101 6850 1.000274 GTGGGTCCTGCAACAAATGTC 60.000 52.381 0.00 0.00 0.00 3.06
6102 6851 0.603065 GGGTCCTGCAACAAATGTCC 59.397 55.000 0.00 0.00 0.00 4.02
6103 6852 1.327303 GGTCCTGCAACAAATGTCCA 58.673 50.000 0.00 0.00 0.00 4.02
6104 6853 1.686052 GGTCCTGCAACAAATGTCCAA 59.314 47.619 0.00 0.00 0.00 3.53
6105 6854 2.545742 GGTCCTGCAACAAATGTCCAAC 60.546 50.000 0.00 0.00 0.00 3.77
6106 6855 2.100584 GTCCTGCAACAAATGTCCAACA 59.899 45.455 0.00 0.00 0.00 3.33
6107 6856 2.964464 TCCTGCAACAAATGTCCAACAT 59.036 40.909 0.00 0.00 41.31 2.71
6108 6857 4.022416 GTCCTGCAACAAATGTCCAACATA 60.022 41.667 0.00 0.00 37.97 2.29
6109 6858 4.022416 TCCTGCAACAAATGTCCAACATAC 60.022 41.667 0.00 0.00 37.97 2.39
6110 6859 4.236935 CTGCAACAAATGTCCAACATACC 58.763 43.478 0.00 0.00 37.97 2.73
6111 6860 3.006323 TGCAACAAATGTCCAACATACCC 59.994 43.478 0.00 0.00 37.97 3.69
6112 6861 3.616317 GCAACAAATGTCCAACATACCCC 60.616 47.826 0.00 0.00 37.97 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
424 1094 1.633561 CACACCTGATGCTACACGAG 58.366 55.000 0.00 0.00 0.00 4.18
635 1305 1.130955 GTGCGCATCCAAAACTTGTG 58.869 50.000 15.91 0.00 0.00 3.33
736 1406 2.794350 ACGCACAAATTTTAACTGCTGC 59.206 40.909 0.00 0.00 0.00 5.25
827 1497 0.320374 CAGAGTGCGTAACCCCTCAA 59.680 55.000 0.00 0.00 0.00 3.02
828 1498 0.830444 ACAGAGTGCGTAACCCCTCA 60.830 55.000 0.00 0.00 0.00 3.86
854 1524 6.406512 GCAAAATTAACTTGGATAACCCCGAT 60.407 38.462 0.00 0.00 34.81 4.18
1029 1699 2.516227 TCCCAACACTGAACCACAAA 57.484 45.000 0.00 0.00 0.00 2.83
1074 1744 5.383476 AGATTTTCCATGAGACCATCATCC 58.617 41.667 0.00 0.00 46.01 3.51
1089 1759 6.566197 TTTGAGCTTTCTCTGAGATTTTCC 57.434 37.500 8.42 0.00 40.03 3.13
1145 1815 5.180117 AGACCTGAAATCGACAAATCAAGTG 59.820 40.000 0.00 0.00 0.00 3.16
1146 1816 5.180117 CAGACCTGAAATCGACAAATCAAGT 59.820 40.000 0.00 0.00 0.00 3.16
1195 1865 6.430007 AGTGCTCCAATAGATCTGGAAAAAT 58.570 36.000 5.18 0.00 42.43 1.82
1550 2221 2.291741 GACCAAACTTGCTGAAGTCAGG 59.708 50.000 10.25 0.00 41.87 3.86
1604 2275 0.523072 CACCAACCTTCAAGCCATCG 59.477 55.000 0.00 0.00 0.00 3.84
1649 2320 5.618395 GTGCAGTTAACTTACGTAAACAAGC 59.382 40.000 5.07 12.26 0.00 4.01
2015 2686 8.500837 TTTTTATGCATCAGTGTTACTTTTCG 57.499 30.769 0.19 0.00 0.00 3.46
2026 2697 8.308931 AGTGAAATGTCATTTTTATGCATCAGT 58.691 29.630 12.04 3.71 35.80 3.41
2151 2822 3.059352 AGATGTTCTTTCCTCAACCGG 57.941 47.619 0.00 0.00 0.00 5.28
2638 3310 4.575885 TGAGCAAATACTACACAACCTCC 58.424 43.478 0.00 0.00 0.00 4.30
2686 3358 1.776667 TGGGATGATCCAAGGGTCATC 59.223 52.381 26.93 26.93 46.28 2.92
2687 3359 1.779092 CTGGGATGATCCAAGGGTCAT 59.221 52.381 14.51 14.51 38.64 3.06
2688 3360 1.216064 CTGGGATGATCCAAGGGTCA 58.784 55.000 14.36 4.24 38.64 4.02
2693 3365 4.989875 AGTTATCCTGGGATGATCCAAG 57.010 45.455 14.36 11.66 38.64 3.61
2694 3366 4.846367 CCTAGTTATCCTGGGATGATCCAA 59.154 45.833 14.36 0.00 44.45 3.53
2695 3367 4.429505 CCTAGTTATCCTGGGATGATCCA 58.570 47.826 14.36 0.00 44.45 3.41
2696 3368 3.198853 GCCTAGTTATCCTGGGATGATCC 59.801 52.174 11.98 1.94 44.45 3.36
2717 3389 1.731720 CCACTGCAAGACCTCTAAGC 58.268 55.000 0.00 0.00 37.43 3.09
2820 3492 4.621274 GCGGTACAACCATACTACCTTCAA 60.621 45.833 0.00 0.00 38.47 2.69
2886 3558 3.190738 TTTGGAGGTGGAGGTGGCG 62.191 63.158 0.00 0.00 0.00 5.69
2902 3574 0.183492 TGGCTGAAGGCTGTGTCTTT 59.817 50.000 5.41 0.00 41.69 2.52
2940 3612 1.506493 GCTACAGCGCATCTGCTTAT 58.494 50.000 11.47 0.00 44.46 1.73
2992 3664 2.550978 ACGAAGGTGACAAACTGACAG 58.449 47.619 0.00 0.00 0.00 3.51
3074 3746 7.954788 GCTGTTATTAGACAGGGAGATTAAG 57.045 40.000 7.10 0.00 45.59 1.85
3094 3766 2.280797 TTTTCTCGCTGGCGCTGT 60.281 55.556 7.64 0.00 39.59 4.40
3103 3775 0.673644 TAGCAGCAGGGTTTTCTCGC 60.674 55.000 0.00 0.00 0.00 5.03
3261 3933 7.224949 GGAGATAAGTTATTTGTCTGCCTGTAC 59.775 40.741 0.00 0.00 38.74 2.90
3390 4062 4.846779 TGCAACTCAAGTAAAATGGACC 57.153 40.909 0.00 0.00 0.00 4.46
3803 4482 3.056107 TCCAGACACCTTTACCAGAATCG 60.056 47.826 0.00 0.00 0.00 3.34
3834 4513 9.671279 ATGGAAATGATTAGAAATTGTTTTCCC 57.329 29.630 8.22 0.00 41.86 3.97
3882 4561 5.698089 TCTGAGATTGATTACCGATGAATGC 59.302 40.000 0.00 0.00 0.00 3.56
4245 4934 4.675976 TGAACAAAGAGGACGGAACTTA 57.324 40.909 0.00 0.00 0.00 2.24
4285 4974 3.519510 TCAAGAATTCTAGGGTCCCACTG 59.480 47.826 11.55 0.00 0.00 3.66
4448 5137 4.372656 ACTAAGAATATCGCCAAGAGCAC 58.627 43.478 0.00 0.00 44.04 4.40
4550 5246 1.266718 CCTAGCAAGCAAAAGCGACAA 59.733 47.619 0.00 0.00 35.48 3.18
4599 5302 1.631405 TGCCAACAAATCTCCCCTTG 58.369 50.000 0.00 0.00 0.00 3.61
4782 5507 5.458041 TTCCTTTGAGAAGATGCAAAAGG 57.542 39.130 14.92 14.92 34.01 3.11
4783 5508 7.775397 TTTTTCCTTTGAGAAGATGCAAAAG 57.225 32.000 0.00 0.00 34.01 2.27
4935 5673 8.995027 ATTTTCCAGGCATAGTAATGTTATCA 57.005 30.769 0.00 0.00 35.38 2.15
4952 5690 7.877097 TGTTTCCATCATTTGGTAATTTTCCAG 59.123 33.333 0.00 0.00 46.52 3.86
5014 5752 3.664537 CGCAAATCATCGAGCTCATCATG 60.665 47.826 15.40 12.16 0.00 3.07
5047 5785 7.017155 TCCGAATCTATCAGATTTTTCCCCATA 59.983 37.037 3.09 0.00 44.41 2.74
5249 5987 5.069318 TGACAGCAGATGAACACCAAAATA 58.931 37.500 0.00 0.00 0.00 1.40
5425 6163 8.722622 TCACCCACCCTTTAAAATTTTATACA 57.277 30.769 11.33 0.00 0.00 2.29
5475 6213 3.113043 AGGTAGAAGGGGCGTAAAATCT 58.887 45.455 0.00 0.00 0.00 2.40
5506 6244 1.873591 CACAAGAGGGAAAAGTGGACG 59.126 52.381 0.00 0.00 0.00 4.79
5630 6379 2.480419 GACAGCAGTACAAATTGAGCGT 59.520 45.455 0.00 1.83 0.00 5.07
5632 6381 2.813754 TGGACAGCAGTACAAATTGAGC 59.186 45.455 0.00 0.00 35.05 4.26
5633 6382 5.181811 TCAATGGACAGCAGTACAAATTGAG 59.818 40.000 6.44 0.00 43.15 3.02
5635 6384 5.156355 GTCAATGGACAGCAGTACAAATTG 58.844 41.667 0.00 0.00 43.15 2.32
5636 6385 5.376854 GTCAATGGACAGCAGTACAAATT 57.623 39.130 0.00 0.00 43.15 1.82
5649 6398 5.856126 TGAAAAGTACGATGTCAATGGAC 57.144 39.130 0.00 0.00 44.57 4.02
5650 6399 5.290885 CGATGAAAAGTACGATGTCAATGGA 59.709 40.000 0.00 0.00 0.00 3.41
5651 6400 5.492854 CGATGAAAAGTACGATGTCAATGG 58.507 41.667 0.00 0.00 0.00 3.16
5652 6401 4.957967 GCGATGAAAAGTACGATGTCAATG 59.042 41.667 0.00 0.00 0.00 2.82
5653 6402 4.034048 GGCGATGAAAAGTACGATGTCAAT 59.966 41.667 0.00 0.00 0.00 2.57
5654 6403 3.369756 GGCGATGAAAAGTACGATGTCAA 59.630 43.478 0.00 0.00 0.00 3.18
5655 6404 2.927477 GGCGATGAAAAGTACGATGTCA 59.073 45.455 0.00 0.00 0.00 3.58
5656 6405 2.034842 CGGCGATGAAAAGTACGATGTC 60.035 50.000 0.00 0.00 0.00 3.06
5657 6406 1.924524 CGGCGATGAAAAGTACGATGT 59.075 47.619 0.00 0.00 0.00 3.06
5658 6407 1.924524 ACGGCGATGAAAAGTACGATG 59.075 47.619 16.62 0.00 0.00 3.84
5659 6408 1.924524 CACGGCGATGAAAAGTACGAT 59.075 47.619 16.62 0.00 0.00 3.73
5660 6409 1.342555 CACGGCGATGAAAAGTACGA 58.657 50.000 16.62 0.00 0.00 3.43
5661 6410 0.368907 CCACGGCGATGAAAAGTACG 59.631 55.000 16.62 0.00 0.00 3.67
5662 6411 1.435577 ACCACGGCGATGAAAAGTAC 58.564 50.000 16.62 0.00 0.00 2.73
5663 6412 3.316071 TTACCACGGCGATGAAAAGTA 57.684 42.857 16.62 3.38 0.00 2.24
5664 6413 2.172851 TTACCACGGCGATGAAAAGT 57.827 45.000 16.62 4.32 0.00 2.66
5665 6414 2.224549 TGTTTACCACGGCGATGAAAAG 59.775 45.455 16.62 0.00 0.00 2.27
5666 6415 2.219458 TGTTTACCACGGCGATGAAAA 58.781 42.857 16.62 6.02 0.00 2.29
5667 6416 1.880271 TGTTTACCACGGCGATGAAA 58.120 45.000 16.62 5.40 0.00 2.69
5668 6417 2.004017 GATGTTTACCACGGCGATGAA 58.996 47.619 16.62 0.00 0.00 2.57
5669 6418 1.206132 AGATGTTTACCACGGCGATGA 59.794 47.619 16.62 0.00 0.00 2.92
5670 6419 1.327460 CAGATGTTTACCACGGCGATG 59.673 52.381 16.62 8.29 0.00 3.84
5671 6420 1.651987 CAGATGTTTACCACGGCGAT 58.348 50.000 16.62 0.25 0.00 4.58
5672 6421 0.390603 CCAGATGTTTACCACGGCGA 60.391 55.000 16.62 0.00 0.00 5.54
5673 6422 1.366111 CCCAGATGTTTACCACGGCG 61.366 60.000 4.80 4.80 0.00 6.46
5674 6423 1.654023 GCCCAGATGTTTACCACGGC 61.654 60.000 0.00 0.00 0.00 5.68
5675 6424 1.366111 CGCCCAGATGTTTACCACGG 61.366 60.000 0.00 0.00 0.00 4.94
5676 6425 1.977594 GCGCCCAGATGTTTACCACG 61.978 60.000 0.00 0.00 0.00 4.94
5677 6426 0.676782 AGCGCCCAGATGTTTACCAC 60.677 55.000 2.29 0.00 0.00 4.16
5678 6427 0.392461 GAGCGCCCAGATGTTTACCA 60.392 55.000 2.29 0.00 0.00 3.25
5679 6428 1.429148 CGAGCGCCCAGATGTTTACC 61.429 60.000 2.29 0.00 0.00 2.85
5680 6429 0.739813 ACGAGCGCCCAGATGTTTAC 60.740 55.000 2.29 0.00 0.00 2.01
5681 6430 0.036765 AACGAGCGCCCAGATGTTTA 60.037 50.000 2.29 0.00 0.00 2.01
5682 6431 1.298859 GAACGAGCGCCCAGATGTTT 61.299 55.000 2.29 0.00 0.00 2.83
5683 6432 1.741770 GAACGAGCGCCCAGATGTT 60.742 57.895 2.29 0.00 0.00 2.71
5684 6433 2.125512 GAACGAGCGCCCAGATGT 60.126 61.111 2.29 0.00 0.00 3.06
5685 6434 1.424493 GAAGAACGAGCGCCCAGATG 61.424 60.000 2.29 0.00 0.00 2.90
5686 6435 1.153549 GAAGAACGAGCGCCCAGAT 60.154 57.895 2.29 0.00 0.00 2.90
5687 6436 2.261671 GAAGAACGAGCGCCCAGA 59.738 61.111 2.29 0.00 0.00 3.86
5688 6437 2.097038 CAGAAGAACGAGCGCCCAG 61.097 63.158 2.29 0.00 0.00 4.45
5689 6438 1.529152 TACAGAAGAACGAGCGCCCA 61.529 55.000 2.29 0.00 0.00 5.36
5690 6439 1.077089 GTACAGAAGAACGAGCGCCC 61.077 60.000 2.29 0.00 0.00 6.13
5691 6440 1.403972 CGTACAGAAGAACGAGCGCC 61.404 60.000 2.29 0.00 41.55 6.53
5692 6441 1.981668 CGTACAGAAGAACGAGCGC 59.018 57.895 0.00 0.00 41.55 5.92
5693 6442 1.403972 GGCGTACAGAAGAACGAGCG 61.404 60.000 0.00 0.00 41.55 5.03
5694 6443 1.077089 GGGCGTACAGAAGAACGAGC 61.077 60.000 0.00 0.00 41.55 5.03
5695 6444 0.797249 CGGGCGTACAGAAGAACGAG 60.797 60.000 0.00 0.00 41.55 4.18
5696 6445 1.210931 CGGGCGTACAGAAGAACGA 59.789 57.895 0.00 0.00 41.55 3.85
5697 6446 1.080974 ACGGGCGTACAGAAGAACG 60.081 57.895 0.00 0.00 41.92 3.95
5698 6447 0.319297 ACACGGGCGTACAGAAGAAC 60.319 55.000 0.00 0.00 0.00 3.01
5699 6448 1.246649 TACACGGGCGTACAGAAGAA 58.753 50.000 0.00 0.00 0.00 2.52
5700 6449 1.246649 TTACACGGGCGTACAGAAGA 58.753 50.000 0.00 0.00 0.00 2.87
5701 6450 2.190981 GATTACACGGGCGTACAGAAG 58.809 52.381 0.00 0.00 0.00 2.85
5702 6451 1.467883 CGATTACACGGGCGTACAGAA 60.468 52.381 0.00 0.00 0.00 3.02
5703 6452 0.099259 CGATTACACGGGCGTACAGA 59.901 55.000 0.00 0.00 0.00 3.41
5704 6453 2.573802 CGATTACACGGGCGTACAG 58.426 57.895 0.00 0.00 0.00 2.74
5705 6454 4.790051 CGATTACACGGGCGTACA 57.210 55.556 0.00 0.00 0.00 2.90
5713 6462 0.660595 CGCTCTAGCCCGATTACACG 60.661 60.000 0.00 0.00 37.91 4.49
5714 6463 0.666913 TCGCTCTAGCCCGATTACAC 59.333 55.000 0.00 0.00 37.91 2.90
5715 6464 0.666913 GTCGCTCTAGCCCGATTACA 59.333 55.000 7.62 0.00 37.91 2.41
5716 6465 0.953003 AGTCGCTCTAGCCCGATTAC 59.047 55.000 7.62 0.00 37.91 1.89
5717 6466 0.952280 CAGTCGCTCTAGCCCGATTA 59.048 55.000 7.62 0.00 37.91 1.75
5718 6467 0.752009 TCAGTCGCTCTAGCCCGATT 60.752 55.000 7.62 1.92 37.91 3.34
5719 6468 0.538516 ATCAGTCGCTCTAGCCCGAT 60.539 55.000 7.62 0.00 37.91 4.18
5720 6469 1.152943 ATCAGTCGCTCTAGCCCGA 60.153 57.895 0.00 1.19 37.91 5.14
5721 6470 1.007964 CATCAGTCGCTCTAGCCCG 60.008 63.158 0.00 0.00 37.91 6.13
5722 6471 1.300542 GCATCAGTCGCTCTAGCCC 60.301 63.158 0.00 0.00 37.91 5.19
5723 6472 0.033228 ATGCATCAGTCGCTCTAGCC 59.967 55.000 0.00 0.00 37.91 3.93
5724 6473 1.138337 CATGCATCAGTCGCTCTAGC 58.862 55.000 0.00 0.00 37.78 3.42
5725 6474 1.604947 CCCATGCATCAGTCGCTCTAG 60.605 57.143 0.00 0.00 0.00 2.43
5726 6475 0.390492 CCCATGCATCAGTCGCTCTA 59.610 55.000 0.00 0.00 0.00 2.43
5727 6476 1.145598 CCCATGCATCAGTCGCTCT 59.854 57.895 0.00 0.00 0.00 4.09
5728 6477 2.541120 GCCCATGCATCAGTCGCTC 61.541 63.158 0.00 0.00 37.47 5.03
5729 6478 2.515523 GCCCATGCATCAGTCGCT 60.516 61.111 0.00 0.00 37.47 4.93
5730 6479 3.589881 GGCCCATGCATCAGTCGC 61.590 66.667 0.00 0.00 40.13 5.19
5731 6480 2.124612 TGGCCCATGCATCAGTCG 60.125 61.111 0.00 0.00 40.13 4.18
5732 6481 2.487532 GCTGGCCCATGCATCAGTC 61.488 63.158 13.02 3.04 40.13 3.51
5733 6482 2.441532 GCTGGCCCATGCATCAGT 60.442 61.111 13.02 0.00 40.13 3.41
5734 6483 2.347691 TAGGCTGGCCCATGCATCAG 62.348 60.000 8.11 8.41 40.13 2.90
5735 6484 2.347691 CTAGGCTGGCCCATGCATCA 62.348 60.000 8.11 0.00 40.13 3.07
5736 6485 1.602888 CTAGGCTGGCCCATGCATC 60.603 63.158 8.11 0.00 40.13 3.91
5737 6486 2.519441 CTAGGCTGGCCCATGCAT 59.481 61.111 8.11 2.12 40.13 3.96
5738 6487 4.511246 GCTAGGCTGGCCCATGCA 62.511 66.667 12.39 0.00 40.13 3.96
5739 6488 4.511246 TGCTAGGCTGGCCCATGC 62.511 66.667 20.71 10.42 36.58 4.06
5740 6489 2.203308 CTGCTAGGCTGGCCCATG 60.203 66.667 20.71 4.27 36.58 3.66
5741 6490 4.201122 GCTGCTAGGCTGGCCCAT 62.201 66.667 20.71 0.00 36.58 4.00
5758 6507 3.983562 CACGCACACACCGTGTCG 61.984 66.667 0.00 5.46 43.92 4.35
5776 6525 2.604174 GCTTTCACCCGGACACACG 61.604 63.158 0.73 0.00 0.00 4.49
5788 6537 1.522806 ACGAACACCGCTGCTTTCA 60.523 52.632 0.00 0.00 43.32 2.69
5823 6572 4.382147 GGGTGCAAACAAGGACAGTAAAAA 60.382 41.667 0.00 0.00 0.00 1.94
5824 6573 3.131400 GGGTGCAAACAAGGACAGTAAAA 59.869 43.478 0.00 0.00 0.00 1.52
5825 6574 2.691011 GGGTGCAAACAAGGACAGTAAA 59.309 45.455 0.00 0.00 0.00 2.01
5826 6575 2.303175 GGGTGCAAACAAGGACAGTAA 58.697 47.619 0.00 0.00 0.00 2.24
5827 6576 1.213182 TGGGTGCAAACAAGGACAGTA 59.787 47.619 0.00 0.00 0.00 2.74
5828 6577 0.033601 TGGGTGCAAACAAGGACAGT 60.034 50.000 0.00 0.00 0.00 3.55
5829 6578 0.670162 CTGGGTGCAAACAAGGACAG 59.330 55.000 0.00 0.00 0.00 3.51
5830 6579 1.391157 GCTGGGTGCAAACAAGGACA 61.391 55.000 0.00 0.00 42.31 4.02
5831 6580 1.363807 GCTGGGTGCAAACAAGGAC 59.636 57.895 0.00 0.00 42.31 3.85
5832 6581 2.192861 CGCTGGGTGCAAACAAGGA 61.193 57.895 0.00 0.00 43.06 3.36
5833 6582 2.336088 CGCTGGGTGCAAACAAGG 59.664 61.111 0.00 0.00 43.06 3.61
5834 6583 2.336088 CCGCTGGGTGCAAACAAG 59.664 61.111 0.00 0.00 43.06 3.16
5835 6584 3.910490 GCCGCTGGGTGCAAACAA 61.910 61.111 0.00 0.00 43.06 2.83
5872 6621 4.742201 CGATAGATGGGCCCGCCG 62.742 72.222 19.37 9.98 35.57 6.46
5873 6622 4.394712 CCGATAGATGGGCCCGCC 62.395 72.222 19.37 11.58 39.76 6.13
5874 6623 3.591254 GACCGATAGATGGGCCCGC 62.591 68.421 19.37 12.32 39.76 6.13
5875 6624 1.878656 GAGACCGATAGATGGGCCCG 61.879 65.000 19.37 2.26 33.76 6.13
5876 6625 1.878656 CGAGACCGATAGATGGGCCC 61.879 65.000 17.59 17.59 33.76 5.80
5877 6626 1.179814 ACGAGACCGATAGATGGGCC 61.180 60.000 0.00 0.00 33.76 5.80
5878 6627 0.039074 CACGAGACCGATAGATGGGC 60.039 60.000 0.00 0.00 39.50 5.36
5879 6628 0.598562 CCACGAGACCGATAGATGGG 59.401 60.000 0.00 0.00 39.50 4.00
5880 6629 0.598562 CCCACGAGACCGATAGATGG 59.401 60.000 0.00 0.00 39.50 3.51
5881 6630 1.001268 CACCCACGAGACCGATAGATG 60.001 57.143 0.00 0.00 39.50 2.90
5882 6631 1.319541 CACCCACGAGACCGATAGAT 58.680 55.000 0.00 0.00 39.50 1.98
5883 6632 0.034767 ACACCCACGAGACCGATAGA 60.035 55.000 0.00 0.00 39.50 1.98
5884 6633 0.100682 CACACCCACGAGACCGATAG 59.899 60.000 0.00 0.00 39.50 2.08
5885 6634 0.609957 ACACACCCACGAGACCGATA 60.610 55.000 0.00 0.00 39.50 2.92
5886 6635 1.906824 ACACACCCACGAGACCGAT 60.907 57.895 0.00 0.00 39.50 4.18
5887 6636 2.520020 ACACACCCACGAGACCGA 60.520 61.111 0.00 0.00 39.50 4.69
5888 6637 2.355837 CACACACCCACGAGACCG 60.356 66.667 0.00 0.00 42.50 4.79
5889 6638 2.030562 CCACACACCCACGAGACC 59.969 66.667 0.00 0.00 0.00 3.85
5890 6639 2.665185 GCCACACACCCACGAGAC 60.665 66.667 0.00 0.00 0.00 3.36
5891 6640 2.842462 AGCCACACACCCACGAGA 60.842 61.111 0.00 0.00 0.00 4.04
5892 6641 2.357517 GAGCCACACACCCACGAG 60.358 66.667 0.00 0.00 0.00 4.18
5893 6642 3.157949 TGAGCCACACACCCACGA 61.158 61.111 0.00 0.00 0.00 4.35
5894 6643 2.666190 CTGAGCCACACACCCACG 60.666 66.667 0.00 0.00 0.00 4.94
5895 6644 1.302033 CTCTGAGCCACACACCCAC 60.302 63.158 0.00 0.00 0.00 4.61
5896 6645 1.459348 TCTCTGAGCCACACACCCA 60.459 57.895 0.00 0.00 0.00 4.51
5897 6646 1.188219 TCTCTCTGAGCCACACACCC 61.188 60.000 0.00 0.00 0.00 4.61
5898 6647 0.246086 CTCTCTCTGAGCCACACACC 59.754 60.000 0.00 0.00 35.84 4.16
5899 6648 3.810579 CTCTCTCTGAGCCACACAC 57.189 57.895 0.00 0.00 35.84 3.82
5907 6656 1.064621 GCTCGCTGCTCTCTCTGAG 59.935 63.158 0.00 0.00 45.33 3.35
5908 6657 2.759123 CGCTCGCTGCTCTCTCTGA 61.759 63.158 0.00 0.00 40.11 3.27
5909 6658 2.278077 CGCTCGCTGCTCTCTCTG 60.278 66.667 0.00 0.00 40.11 3.35
5910 6659 3.517140 CCGCTCGCTGCTCTCTCT 61.517 66.667 0.00 0.00 40.11 3.10
5911 6660 4.567385 CCCGCTCGCTGCTCTCTC 62.567 72.222 0.00 0.00 40.11 3.20
5937 6686 4.742201 TCTCTCGTGCCCGCTTGC 62.742 66.667 0.00 0.00 0.00 4.01
5938 6687 1.227999 TTTTCTCTCGTGCCCGCTTG 61.228 55.000 0.00 0.00 0.00 4.01
5939 6688 0.951040 CTTTTCTCTCGTGCCCGCTT 60.951 55.000 0.00 0.00 0.00 4.68
5940 6689 1.374758 CTTTTCTCTCGTGCCCGCT 60.375 57.895 0.00 0.00 0.00 5.52
5941 6690 0.949105 TTCTTTTCTCTCGTGCCCGC 60.949 55.000 0.00 0.00 0.00 6.13
5942 6691 1.461127 CTTTCTTTTCTCTCGTGCCCG 59.539 52.381 0.00 0.00 0.00 6.13
5943 6692 1.807142 CCTTTCTTTTCTCTCGTGCCC 59.193 52.381 0.00 0.00 0.00 5.36
5944 6693 1.807142 CCCTTTCTTTTCTCTCGTGCC 59.193 52.381 0.00 0.00 0.00 5.01
5945 6694 1.807142 CCCCTTTCTTTTCTCTCGTGC 59.193 52.381 0.00 0.00 0.00 5.34
5946 6695 2.038557 TCCCCCTTTCTTTTCTCTCGTG 59.961 50.000 0.00 0.00 0.00 4.35
5947 6696 2.335933 TCCCCCTTTCTTTTCTCTCGT 58.664 47.619 0.00 0.00 0.00 4.18
5948 6697 3.636153 ATCCCCCTTTCTTTTCTCTCG 57.364 47.619 0.00 0.00 0.00 4.04
5949 6698 5.325239 TCAAATCCCCCTTTCTTTTCTCTC 58.675 41.667 0.00 0.00 0.00 3.20
5950 6699 5.339423 TCAAATCCCCCTTTCTTTTCTCT 57.661 39.130 0.00 0.00 0.00 3.10
5951 6700 6.611613 AATCAAATCCCCCTTTCTTTTCTC 57.388 37.500 0.00 0.00 0.00 2.87
5952 6701 7.392766 AAAATCAAATCCCCCTTTCTTTTCT 57.607 32.000 0.00 0.00 0.00 2.52
5975 6724 3.261897 TCCAAAGAAAGTGGTGGCAAAAA 59.738 39.130 0.00 0.00 37.43 1.94
5976 6725 2.834549 TCCAAAGAAAGTGGTGGCAAAA 59.165 40.909 0.00 0.00 37.43 2.44
5977 6726 2.167487 GTCCAAAGAAAGTGGTGGCAAA 59.833 45.455 0.00 0.00 37.43 3.68
5978 6727 1.754226 GTCCAAAGAAAGTGGTGGCAA 59.246 47.619 0.00 0.00 37.43 4.52
5979 6728 1.064017 AGTCCAAAGAAAGTGGTGGCA 60.064 47.619 0.00 0.00 37.43 4.92
5980 6729 1.692411 AGTCCAAAGAAAGTGGTGGC 58.308 50.000 0.00 0.00 37.43 5.01
5981 6730 3.699038 TCAAAGTCCAAAGAAAGTGGTGG 59.301 43.478 0.00 0.00 37.43 4.61
5982 6731 4.981806 TCAAAGTCCAAAGAAAGTGGTG 57.018 40.909 0.00 0.00 37.43 4.17
5983 6732 7.839680 ATTATCAAAGTCCAAAGAAAGTGGT 57.160 32.000 0.00 0.00 37.43 4.16
5984 6733 8.981647 CAAATTATCAAAGTCCAAAGAAAGTGG 58.018 33.333 0.00 0.00 37.51 4.00
5985 6734 8.490355 GCAAATTATCAAAGTCCAAAGAAAGTG 58.510 33.333 0.00 0.00 0.00 3.16
5986 6735 7.657354 GGCAAATTATCAAAGTCCAAAGAAAGT 59.343 33.333 0.00 0.00 0.00 2.66
5987 6736 7.656948 TGGCAAATTATCAAAGTCCAAAGAAAG 59.343 33.333 0.00 0.00 0.00 2.62
5988 6737 7.440856 GTGGCAAATTATCAAAGTCCAAAGAAA 59.559 33.333 0.00 0.00 0.00 2.52
5989 6738 6.928492 GTGGCAAATTATCAAAGTCCAAAGAA 59.072 34.615 0.00 0.00 0.00 2.52
5990 6739 6.454795 GTGGCAAATTATCAAAGTCCAAAGA 58.545 36.000 0.00 0.00 0.00 2.52
5991 6740 5.639082 GGTGGCAAATTATCAAAGTCCAAAG 59.361 40.000 0.00 0.00 0.00 2.77
5992 6741 5.512232 GGGTGGCAAATTATCAAAGTCCAAA 60.512 40.000 0.00 0.00 0.00 3.28
5993 6742 4.020662 GGGTGGCAAATTATCAAAGTCCAA 60.021 41.667 0.00 0.00 0.00 3.53
5994 6743 3.513515 GGGTGGCAAATTATCAAAGTCCA 59.486 43.478 0.00 0.00 0.00 4.02
5995 6744 3.769300 AGGGTGGCAAATTATCAAAGTCC 59.231 43.478 0.00 0.00 0.00 3.85
5996 6745 5.405935 AAGGGTGGCAAATTATCAAAGTC 57.594 39.130 0.00 0.00 0.00 3.01
5997 6746 5.823861 AAAGGGTGGCAAATTATCAAAGT 57.176 34.783 0.00 0.00 0.00 2.66
5998 6747 6.935167 AGTAAAGGGTGGCAAATTATCAAAG 58.065 36.000 0.00 0.00 0.00 2.77
5999 6748 6.926630 AGTAAAGGGTGGCAAATTATCAAA 57.073 33.333 0.00 0.00 0.00 2.69
6000 6749 6.926630 AAGTAAAGGGTGGCAAATTATCAA 57.073 33.333 0.00 0.00 0.00 2.57
6001 6750 6.268847 ACAAAGTAAAGGGTGGCAAATTATCA 59.731 34.615 0.00 0.00 0.00 2.15
6002 6751 6.697395 ACAAAGTAAAGGGTGGCAAATTATC 58.303 36.000 0.00 0.00 0.00 1.75
6003 6752 6.680148 ACAAAGTAAAGGGTGGCAAATTAT 57.320 33.333 0.00 0.00 0.00 1.28
6004 6753 7.598759 TTACAAAGTAAAGGGTGGCAAATTA 57.401 32.000 0.00 0.00 0.00 1.40
6005 6754 6.487299 TTACAAAGTAAAGGGTGGCAAATT 57.513 33.333 0.00 0.00 0.00 1.82
6006 6755 6.680148 ATTACAAAGTAAAGGGTGGCAAAT 57.320 33.333 0.00 0.00 0.00 2.32
6007 6756 6.098409 TCAATTACAAAGTAAAGGGTGGCAAA 59.902 34.615 0.00 0.00 0.00 3.68
6008 6757 5.598830 TCAATTACAAAGTAAAGGGTGGCAA 59.401 36.000 0.00 0.00 0.00 4.52
6009 6758 5.141182 TCAATTACAAAGTAAAGGGTGGCA 58.859 37.500 0.00 0.00 0.00 4.92
6010 6759 5.715434 TCAATTACAAAGTAAAGGGTGGC 57.285 39.130 0.00 0.00 0.00 5.01
6011 6760 7.393234 TCAGATCAATTACAAAGTAAAGGGTGG 59.607 37.037 0.00 0.00 0.00 4.61
6012 6761 8.335532 TCAGATCAATTACAAAGTAAAGGGTG 57.664 34.615 0.00 0.00 0.00 4.61
6013 6762 8.960591 CATCAGATCAATTACAAAGTAAAGGGT 58.039 33.333 0.00 0.00 0.00 4.34
6014 6763 9.177608 TCATCAGATCAATTACAAAGTAAAGGG 57.822 33.333 0.00 0.00 0.00 3.95
6015 6764 9.994432 GTCATCAGATCAATTACAAAGTAAAGG 57.006 33.333 0.00 0.00 0.00 3.11
6018 6767 9.725019 AGTGTCATCAGATCAATTACAAAGTAA 57.275 29.630 0.00 0.00 0.00 2.24
6019 6768 9.371136 GAGTGTCATCAGATCAATTACAAAGTA 57.629 33.333 0.00 0.00 0.00 2.24
6020 6769 8.099537 AGAGTGTCATCAGATCAATTACAAAGT 58.900 33.333 0.00 0.00 0.00 2.66
6021 6770 8.489990 AGAGTGTCATCAGATCAATTACAAAG 57.510 34.615 0.00 0.00 0.00 2.77
6022 6771 8.853077 AAGAGTGTCATCAGATCAATTACAAA 57.147 30.769 0.00 0.00 0.00 2.83
6023 6772 8.853077 AAAGAGTGTCATCAGATCAATTACAA 57.147 30.769 0.00 0.00 0.00 2.41
6024 6773 8.724229 CAAAAGAGTGTCATCAGATCAATTACA 58.276 33.333 0.00 0.00 0.00 2.41
6025 6774 8.725148 ACAAAAGAGTGTCATCAGATCAATTAC 58.275 33.333 0.00 0.00 0.00 1.89
6026 6775 8.853077 ACAAAAGAGTGTCATCAGATCAATTA 57.147 30.769 0.00 0.00 0.00 1.40
6027 6776 7.756395 ACAAAAGAGTGTCATCAGATCAATT 57.244 32.000 0.00 0.00 0.00 2.32
6028 6777 7.756395 AACAAAAGAGTGTCATCAGATCAAT 57.244 32.000 0.00 0.00 0.00 2.57
6029 6778 7.420002 CAAACAAAAGAGTGTCATCAGATCAA 58.580 34.615 0.00 0.00 0.00 2.57
6030 6779 6.016860 CCAAACAAAAGAGTGTCATCAGATCA 60.017 38.462 0.00 0.00 0.00 2.92
6031 6780 6.205464 TCCAAACAAAAGAGTGTCATCAGATC 59.795 38.462 0.00 0.00 0.00 2.75
6032 6781 6.016777 GTCCAAACAAAAGAGTGTCATCAGAT 60.017 38.462 0.00 0.00 0.00 2.90
6033 6782 5.296780 GTCCAAACAAAAGAGTGTCATCAGA 59.703 40.000 0.00 0.00 0.00 3.27
6034 6783 5.297776 AGTCCAAACAAAAGAGTGTCATCAG 59.702 40.000 0.00 0.00 0.00 2.90
6035 6784 5.192927 AGTCCAAACAAAAGAGTGTCATCA 58.807 37.500 0.00 0.00 0.00 3.07
6036 6785 5.757850 AGTCCAAACAAAAGAGTGTCATC 57.242 39.130 0.00 0.00 0.00 2.92
6037 6786 6.332630 CAAAGTCCAAACAAAAGAGTGTCAT 58.667 36.000 0.00 0.00 0.00 3.06
6038 6787 5.708948 CAAAGTCCAAACAAAAGAGTGTCA 58.291 37.500 0.00 0.00 0.00 3.58
6039 6788 4.562789 GCAAAGTCCAAACAAAAGAGTGTC 59.437 41.667 0.00 0.00 0.00 3.67
6040 6789 4.220602 AGCAAAGTCCAAACAAAAGAGTGT 59.779 37.500 0.00 0.00 0.00 3.55
6041 6790 4.747810 AGCAAAGTCCAAACAAAAGAGTG 58.252 39.130 0.00 0.00 0.00 3.51
6042 6791 5.652452 AGTAGCAAAGTCCAAACAAAAGAGT 59.348 36.000 0.00 0.00 0.00 3.24
6043 6792 6.136541 AGTAGCAAAGTCCAAACAAAAGAG 57.863 37.500 0.00 0.00 0.00 2.85
6044 6793 6.524101 AAGTAGCAAAGTCCAAACAAAAGA 57.476 33.333 0.00 0.00 0.00 2.52
6045 6794 6.455513 GCAAAGTAGCAAAGTCCAAACAAAAG 60.456 38.462 0.00 0.00 0.00 2.27
6046 6795 5.350091 GCAAAGTAGCAAAGTCCAAACAAAA 59.650 36.000 0.00 0.00 0.00 2.44
6047 6796 4.867608 GCAAAGTAGCAAAGTCCAAACAAA 59.132 37.500 0.00 0.00 0.00 2.83
6048 6797 4.429108 GCAAAGTAGCAAAGTCCAAACAA 58.571 39.130 0.00 0.00 0.00 2.83
6049 6798 3.181480 GGCAAAGTAGCAAAGTCCAAACA 60.181 43.478 0.00 0.00 35.83 2.83
6050 6799 3.381045 GGCAAAGTAGCAAAGTCCAAAC 58.619 45.455 0.00 0.00 35.83 2.93
6051 6800 2.364002 GGGCAAAGTAGCAAAGTCCAAA 59.636 45.455 0.00 0.00 35.83 3.28
6052 6801 1.960689 GGGCAAAGTAGCAAAGTCCAA 59.039 47.619 0.00 0.00 35.83 3.53
6053 6802 1.144913 AGGGCAAAGTAGCAAAGTCCA 59.855 47.619 0.00 0.00 35.83 4.02
6054 6803 1.813178 GAGGGCAAAGTAGCAAAGTCC 59.187 52.381 0.00 0.00 35.83 3.85
6055 6804 2.485814 CAGAGGGCAAAGTAGCAAAGTC 59.514 50.000 0.00 0.00 35.83 3.01
6056 6805 2.158608 ACAGAGGGCAAAGTAGCAAAGT 60.159 45.455 0.00 0.00 35.83 2.66
6057 6806 2.485814 GACAGAGGGCAAAGTAGCAAAG 59.514 50.000 0.00 0.00 35.83 2.77
6058 6807 2.158682 TGACAGAGGGCAAAGTAGCAAA 60.159 45.455 0.00 0.00 35.83 3.68
6059 6808 1.419762 TGACAGAGGGCAAAGTAGCAA 59.580 47.619 0.00 0.00 35.83 3.91
6060 6809 1.002430 CTGACAGAGGGCAAAGTAGCA 59.998 52.381 0.00 0.00 35.83 3.49
6061 6810 1.677217 CCTGACAGAGGGCAAAGTAGC 60.677 57.143 3.32 0.00 38.36 3.58
6062 6811 2.393271 CCTGACAGAGGGCAAAGTAG 57.607 55.000 3.32 0.00 38.36 2.57
6080 6829 0.318120 CATTTGTTGCAGGACCCACC 59.682 55.000 0.00 0.00 39.35 4.61
6081 6830 1.000274 GACATTTGTTGCAGGACCCAC 60.000 52.381 0.00 0.00 0.00 4.61
6082 6831 1.327303 GACATTTGTTGCAGGACCCA 58.673 50.000 0.00 0.00 0.00 4.51
6083 6832 0.603065 GGACATTTGTTGCAGGACCC 59.397 55.000 0.00 0.00 0.00 4.46
6084 6833 1.327303 TGGACATTTGTTGCAGGACC 58.673 50.000 0.00 0.00 0.00 4.46
6085 6834 2.100584 TGTTGGACATTTGTTGCAGGAC 59.899 45.455 0.00 0.00 0.00 3.85
6086 6835 2.382882 TGTTGGACATTTGTTGCAGGA 58.617 42.857 0.00 0.00 0.00 3.86
6087 6836 2.886862 TGTTGGACATTTGTTGCAGG 57.113 45.000 0.00 0.00 0.00 4.85
6088 6837 4.236935 GGTATGTTGGACATTTGTTGCAG 58.763 43.478 0.00 0.00 39.88 4.41
6089 6838 3.006323 GGGTATGTTGGACATTTGTTGCA 59.994 43.478 0.00 0.00 39.88 4.08
6090 6839 3.584834 GGGTATGTTGGACATTTGTTGC 58.415 45.455 0.00 0.00 39.88 4.17
6091 6840 4.186856 GGGGTATGTTGGACATTTGTTG 57.813 45.455 0.00 0.00 39.88 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.