Multiple sequence alignment - TraesCS5D01G296200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G296200 chr5D 100.000 2913 0 0 994 3906 393878081 393875169 0.000000e+00 5380.0
1 TraesCS5D01G296200 chr5D 100.000 571 0 0 1 571 393879074 393878504 0.000000e+00 1055.0
2 TraesCS5D01G296200 chr5D 95.122 41 1 1 3202 3241 393875841 393875801 3.260000e-06 63.9
3 TraesCS5D01G296200 chr5D 95.122 41 1 1 3234 3274 393875873 393875834 3.260000e-06 63.9
4 TraesCS5D01G296200 chr5B 91.592 2236 115 36 1257 3461 473742010 473739817 0.000000e+00 3020.0
5 TraesCS5D01G296200 chr5B 90.988 577 37 8 1 571 473743278 473742711 0.000000e+00 763.0
6 TraesCS5D01G296200 chr5B 85.536 401 27 6 3534 3906 473707137 473706740 1.320000e-104 390.0
7 TraesCS5D01G296200 chr5B 89.474 247 20 2 994 1240 473742229 473741989 1.360000e-79 307.0
8 TraesCS5D01G296200 chr5A 91.782 2166 112 36 994 3133 495885001 495882876 0.000000e+00 2953.0
9 TraesCS5D01G296200 chr5A 86.235 494 44 9 91 571 495885689 495885207 7.480000e-142 514.0
10 TraesCS5D01G296200 chr5A 97.895 95 1 1 1 95 495891825 495891732 3.120000e-36 163.0
11 TraesCS5D01G296200 chr6A 82.736 921 127 24 2161 3073 239342621 239343517 0.000000e+00 791.0
12 TraesCS5D01G296200 chr6A 92.929 99 6 1 1142 1240 47268805 47268708 4.070000e-30 143.0
13 TraesCS5D01G296200 chr6B 87.717 635 60 11 1257 1878 42541293 42540664 0.000000e+00 725.0
14 TraesCS5D01G296200 chr6B 90.291 103 10 0 1138 1240 42541374 42541272 6.810000e-28 135.0
15 TraesCS5D01G296200 chr7D 87.719 627 58 11 1264 1878 449805486 449806105 0.000000e+00 713.0
16 TraesCS5D01G296200 chr4A 87.380 626 63 10 1264 1877 672616286 672615665 0.000000e+00 704.0
17 TraesCS5D01G296200 chr4A 87.102 628 63 12 1264 1878 672578044 672577422 0.000000e+00 695.0
18 TraesCS5D01G296200 chr4A 80.321 498 72 14 2333 2825 299967057 299966581 1.730000e-93 353.0
19 TraesCS5D01G296200 chr3D 87.261 628 60 13 1264 1878 568318582 568317962 0.000000e+00 699.0
20 TraesCS5D01G296200 chr3D 86.762 627 63 12 1264 1878 80681416 80680798 0.000000e+00 680.0
21 TraesCS5D01G296200 chr2D 86.624 628 63 12 1264 1878 491088114 491087495 0.000000e+00 675.0
22 TraesCS5D01G296200 chrUn 82.401 733 74 31 2101 2827 53050624 53049941 4.350000e-164 588.0
23 TraesCS5D01G296200 chr6D 87.774 319 33 1 1286 1604 367177736 367178048 6.170000e-98 368.0
24 TraesCS5D01G296200 chr6D 94.175 103 6 0 1138 1240 21515484 21515586 1.450000e-34 158.0
25 TraesCS5D01G296200 chr4D 91.244 217 13 3 2042 2258 109358592 109358382 1.370000e-74 291.0
26 TraesCS5D01G296200 chr2A 90.909 99 8 1 1142 1240 20110996 20110899 8.810000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G296200 chr5D 393875169 393879074 3905 True 1640.700000 5380 97.561000 1 3906 4 chr5D.!!$R1 3905
1 TraesCS5D01G296200 chr5B 473739817 473743278 3461 True 1363.333333 3020 90.684667 1 3461 3 chr5B.!!$R2 3460
2 TraesCS5D01G296200 chr5A 495882876 495885689 2813 True 1733.500000 2953 89.008500 91 3133 2 chr5A.!!$R2 3042
3 TraesCS5D01G296200 chr6A 239342621 239343517 896 False 791.000000 791 82.736000 2161 3073 1 chr6A.!!$F1 912
4 TraesCS5D01G296200 chr6B 42540664 42541374 710 True 430.000000 725 89.004000 1138 1878 2 chr6B.!!$R1 740
5 TraesCS5D01G296200 chr7D 449805486 449806105 619 False 713.000000 713 87.719000 1264 1878 1 chr7D.!!$F1 614
6 TraesCS5D01G296200 chr4A 672615665 672616286 621 True 704.000000 704 87.380000 1264 1877 1 chr4A.!!$R3 613
7 TraesCS5D01G296200 chr4A 672577422 672578044 622 True 695.000000 695 87.102000 1264 1878 1 chr4A.!!$R2 614
8 TraesCS5D01G296200 chr3D 568317962 568318582 620 True 699.000000 699 87.261000 1264 1878 1 chr3D.!!$R2 614
9 TraesCS5D01G296200 chr3D 80680798 80681416 618 True 680.000000 680 86.762000 1264 1878 1 chr3D.!!$R1 614
10 TraesCS5D01G296200 chr2D 491087495 491088114 619 True 675.000000 675 86.624000 1264 1878 1 chr2D.!!$R1 614
11 TraesCS5D01G296200 chrUn 53049941 53050624 683 True 588.000000 588 82.401000 2101 2827 1 chrUn.!!$R1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 440 1.072648 AGGGGCTTACACGCAAAAGTA 59.927 47.619 0.00 0.0 0.00 2.24 F
1146 1225 0.248661 AGAGTGTGGATCGCGAATCG 60.249 55.000 15.24 0.0 34.99 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1403 0.323816 TCCTGCAACCACACACCAAA 60.324 50.0 0.0 0.0 0.00 3.28 R
3031 3172 0.318762 AGTCTGGAGAACGGAACAGC 59.681 55.0 0.0 0.0 35.91 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.450965 CCAGCAGACCAAATATGAATGTTCC 60.451 44.000 0.00 0.00 0.00 3.62
31 32 5.585390 CAGACCAAATATGAATGTTCCTGC 58.415 41.667 0.00 0.00 0.00 4.85
37 38 5.587388 AATATGAATGTTCCTGCCACAAG 57.413 39.130 0.00 0.00 0.00 3.16
51 52 5.337491 CCTGCCACAAGCTAAAACCAAATAT 60.337 40.000 0.00 0.00 44.23 1.28
133 134 3.372025 GGATAAACTCCCCAGCATCAAGT 60.372 47.826 0.00 0.00 38.19 3.16
145 146 3.252215 CAGCATCAAGTACCAACCGAAAA 59.748 43.478 0.00 0.00 0.00 2.29
166 167 6.759497 AAAATCACTTTCACCTATGCCTAC 57.241 37.500 0.00 0.00 0.00 3.18
170 171 2.159085 ACTTTCACCTATGCCTACGCTC 60.159 50.000 0.00 0.00 35.36 5.03
177 178 2.505405 CTATGCCTACGCTCAGGTCTA 58.495 52.381 2.77 0.00 38.05 2.59
178 179 1.776662 ATGCCTACGCTCAGGTCTAA 58.223 50.000 2.77 0.00 38.05 2.10
233 235 3.824443 CCGTGGGGATTAAAAGAAACACT 59.176 43.478 0.00 0.00 34.06 3.55
240 242 6.202762 GGGGATTAAAAGAAACACTGCAAAAG 59.797 38.462 0.00 0.00 0.00 2.27
299 301 7.148306 GCACTTAGAACCGGAAGATGATTTTTA 60.148 37.037 9.46 0.00 0.00 1.52
310 312 6.015940 GGAAGATGATTTTTATTCCTGCGGAT 60.016 38.462 0.00 0.00 37.13 4.18
324 326 3.404438 GGATGGGGGTGCACGGTA 61.404 66.667 11.45 0.00 0.00 4.02
438 440 1.072648 AGGGGCTTACACGCAAAAGTA 59.927 47.619 0.00 0.00 0.00 2.24
447 457 2.113289 CACGCAAAAGTAACCAAACCG 58.887 47.619 0.00 0.00 0.00 4.44
485 499 1.658114 CGAACACAGTCACCGGAGA 59.342 57.895 9.46 1.33 0.00 3.71
490 504 1.228583 ACAGTCACCGGAGAGAGCA 60.229 57.895 9.46 0.00 0.00 4.26
498 512 2.583520 GGAGAGAGCAGCCCAGTG 59.416 66.667 0.00 0.00 0.00 3.66
508 527 2.359230 GCCCAGTGCAGTCCAGTC 60.359 66.667 0.00 0.00 40.77 3.51
527 546 4.096003 AGTCCATTCCGGCCCACG 62.096 66.667 0.00 0.00 43.80 4.94
1043 1122 4.109675 GCATAGCCCCCACACCGT 62.110 66.667 0.00 0.00 0.00 4.83
1044 1123 2.124736 CATAGCCCCCACACCGTG 60.125 66.667 0.00 0.00 0.00 4.94
1045 1124 4.109675 ATAGCCCCCACACCGTGC 62.110 66.667 0.00 0.00 31.34 5.34
1129 1208 8.601845 TTTGATGTTTGAATCTCGTTCTAAGA 57.398 30.769 0.00 0.00 37.72 2.10
1146 1225 0.248661 AGAGTGTGGATCGCGAATCG 60.249 55.000 15.24 0.00 34.99 3.34
1218 1297 4.778143 CGGTACTGCACCCAGCCC 62.778 72.222 0.00 0.00 45.52 5.19
1219 1298 3.330720 GGTACTGCACCCAGCCCT 61.331 66.667 0.00 0.00 43.02 5.19
1220 1299 2.269241 GTACTGCACCCAGCCCTC 59.731 66.667 0.00 0.00 43.02 4.30
1221 1300 2.203922 TACTGCACCCAGCCCTCA 60.204 61.111 0.00 0.00 43.02 3.86
1222 1301 2.293318 TACTGCACCCAGCCCTCAG 61.293 63.158 0.00 0.00 43.02 3.35
1240 1319 3.869623 GCTCCTGCTTGGAATCTCA 57.130 52.632 1.04 0.00 45.63 3.27
1241 1320 1.666054 GCTCCTGCTTGGAATCTCAG 58.334 55.000 1.04 0.00 45.63 3.35
1242 1321 1.666054 CTCCTGCTTGGAATCTCAGC 58.334 55.000 1.04 0.00 45.63 4.26
1243 1322 1.209990 CTCCTGCTTGGAATCTCAGCT 59.790 52.381 5.95 0.00 45.63 4.24
1244 1323 1.209019 TCCTGCTTGGAATCTCAGCTC 59.791 52.381 5.95 0.00 42.94 4.09
1245 1324 1.666054 CTGCTTGGAATCTCAGCTCC 58.334 55.000 5.95 0.00 0.00 4.70
1246 1325 1.209990 CTGCTTGGAATCTCAGCTCCT 59.790 52.381 5.95 0.00 32.51 3.69
1247 1326 1.065636 TGCTTGGAATCTCAGCTCCTG 60.066 52.381 5.95 0.00 32.51 3.86
1248 1327 1.666054 CTTGGAATCTCAGCTCCTGC 58.334 55.000 0.00 0.00 40.05 4.85
1308 1400 1.016130 GCGTGTGATCTGACTGGGTG 61.016 60.000 0.00 0.00 0.00 4.61
1311 1403 0.473694 TGTGATCTGACTGGGTGGGT 60.474 55.000 0.00 0.00 0.00 4.51
1537 1630 4.537965 CTCGACAAGAACCTCGGTATATG 58.462 47.826 0.00 0.00 0.00 1.78
1552 1649 5.350365 TCGGTATATGCAAAACTTGTCTGTC 59.650 40.000 0.00 0.00 0.00 3.51
1587 1689 1.746615 CGGAGTCCACAATGCCTGG 60.747 63.158 10.49 0.00 0.00 4.45
1605 1708 2.498481 CTGGGGACGTTGGTAGATGTAA 59.502 50.000 0.00 0.00 0.00 2.41
1606 1709 3.109151 TGGGGACGTTGGTAGATGTAAT 58.891 45.455 0.00 0.00 0.00 1.89
1607 1710 4.288398 TGGGGACGTTGGTAGATGTAATA 58.712 43.478 0.00 0.00 0.00 0.98
1612 1715 5.747197 GGACGTTGGTAGATGTAATACTGTG 59.253 44.000 0.00 0.00 0.00 3.66
1639 1742 6.849085 TTTTGACTTGTGGGTATGCAATAT 57.151 33.333 0.00 0.00 0.00 1.28
1721 1830 4.660303 TCCTGCTGTTAGATACATTGGGAT 59.340 41.667 0.00 0.00 35.85 3.85
1860 1990 1.210478 TCACTTCTAAGGATGCCAGCC 59.790 52.381 0.00 0.00 0.00 4.85
1888 2018 6.041979 AGGAAGAACCATTGTTGCTATGTTTT 59.958 34.615 0.00 0.00 42.04 2.43
1914 2044 6.904626 ACCTGAAGTCATGCCTTCTATATTT 58.095 36.000 16.78 0.00 41.17 1.40
1917 2047 6.359804 TGAAGTCATGCCTTCTATATTTGCT 58.640 36.000 16.78 0.00 41.17 3.91
1957 2087 4.389077 ACGTGTTTACTTGCTAGCTCATTC 59.611 41.667 17.23 1.57 0.00 2.67
1958 2088 4.627467 CGTGTTTACTTGCTAGCTCATTCT 59.373 41.667 17.23 0.00 0.00 2.40
1992 2122 3.571828 TGTATAGCAACAAAAGCAGCCAA 59.428 39.130 0.00 0.00 0.00 4.52
1994 2124 5.417266 TGTATAGCAACAAAAGCAGCCAATA 59.583 36.000 0.00 0.00 0.00 1.90
2010 2140 6.036191 GCAGCCAATAAGTAGTTGACTAGTTC 59.964 42.308 13.07 1.79 41.12 3.01
2017 2147 8.967552 ATAAGTAGTTGACTAGTTCAAGTTCG 57.032 34.615 13.07 0.00 44.26 3.95
2302 2432 9.569122 AGTTACCTGTTTGTTTGACATAACTAT 57.431 29.630 0.00 0.00 33.98 2.12
2308 2438 9.398170 CTGTTTGTTTGACATAACTATTCCTTG 57.602 33.333 0.00 0.00 0.00 3.61
2360 2492 6.624423 ACCATTCTTGTGATTAATCTTGTGC 58.376 36.000 16.24 3.13 0.00 4.57
2396 2528 0.687354 AGGCTCAACTGGTCGTCATT 59.313 50.000 0.00 0.00 0.00 2.57
2582 2716 6.038356 AGAAACAAATGCTCACTTTGTCTTG 58.962 36.000 2.27 0.00 43.96 3.02
2695 2830 2.706190 GGAGGCTATCAAGGTATGTGGT 59.294 50.000 0.00 0.00 0.00 4.16
2704 2839 9.672673 GCTATCAAGGTATGTGGTTCATATAAT 57.327 33.333 0.00 0.00 40.54 1.28
2824 2962 4.660938 AAGAAGTGGGGCGGTGGC 62.661 66.667 0.00 0.00 38.90 5.01
2914 3053 2.037902 GAGGATGAACTAAGCCTAGCCC 59.962 54.545 0.00 0.00 0.00 5.19
2919 3058 5.484290 GGATGAACTAAGCCTAGCCCTATAA 59.516 44.000 0.00 0.00 0.00 0.98
2920 3059 6.351456 GGATGAACTAAGCCTAGCCCTATAAG 60.351 46.154 0.00 0.00 0.00 1.73
2921 3060 5.464984 TGAACTAAGCCTAGCCCTATAAGT 58.535 41.667 0.00 0.00 0.00 2.24
2922 3061 6.617538 TGAACTAAGCCTAGCCCTATAAGTA 58.382 40.000 0.00 0.00 0.00 2.24
2923 3062 7.246763 TGAACTAAGCCTAGCCCTATAAGTAT 58.753 38.462 0.00 0.00 0.00 2.12
2959 3100 3.440522 GCCATGTAGTTTCCCTTTCAGTC 59.559 47.826 0.00 0.00 0.00 3.51
3031 3172 5.524511 TCGTATTGTGGTTTTCTGATTCG 57.475 39.130 0.00 0.00 0.00 3.34
3052 3193 2.678324 CTGTTCCGTTCTCCAGACTTC 58.322 52.381 0.00 0.00 0.00 3.01
3118 3259 5.855045 AGTTTTATGTCCTTTGTCGAGTCT 58.145 37.500 0.00 0.00 0.00 3.24
3119 3260 5.696724 AGTTTTATGTCCTTTGTCGAGTCTG 59.303 40.000 0.00 0.00 0.00 3.51
3125 3266 4.340097 TGTCCTTTGTCGAGTCTGAAGTTA 59.660 41.667 0.00 0.00 0.00 2.24
3145 3286 6.119536 AGTTAGTTGTGTTTGACATCTTCCA 58.880 36.000 0.00 0.00 36.28 3.53
3198 3339 1.135859 CGACCAGCTCAATCTGTTTGC 60.136 52.381 0.00 0.00 35.16 3.68
3211 3352 3.690422 TCTGTTTGCGAATTTGTGACAC 58.310 40.909 0.00 0.00 0.00 3.67
3212 3353 3.127721 TCTGTTTGCGAATTTGTGACACA 59.872 39.130 3.56 3.56 0.00 3.72
3213 3354 4.039151 TGTTTGCGAATTTGTGACACAT 57.961 36.364 9.55 0.00 0.00 3.21
3214 3355 4.041049 TGTTTGCGAATTTGTGACACATC 58.959 39.130 9.55 3.31 0.00 3.06
3215 3356 3.978718 TTGCGAATTTGTGACACATCA 57.021 38.095 9.55 0.00 0.00 3.07
3216 3357 4.502171 TTGCGAATTTGTGACACATCAT 57.498 36.364 9.55 2.02 37.14 2.45
3217 3358 5.619625 TTGCGAATTTGTGACACATCATA 57.380 34.783 9.55 0.00 37.14 2.15
3218 3359 5.619625 TGCGAATTTGTGACACATCATAA 57.380 34.783 9.55 0.65 37.14 1.90
3219 3360 5.630061 TGCGAATTTGTGACACATCATAAG 58.370 37.500 9.55 1.52 37.27 1.73
3220 3361 4.496895 GCGAATTTGTGACACATCATAAGC 59.503 41.667 9.55 7.76 37.27 3.09
3221 3362 5.630061 CGAATTTGTGACACATCATAAGCA 58.370 37.500 9.55 0.00 37.27 3.91
3222 3363 5.735892 CGAATTTGTGACACATCATAAGCAG 59.264 40.000 9.55 0.00 37.27 4.24
3223 3364 5.571784 ATTTGTGACACATCATAAGCAGG 57.428 39.130 9.55 0.00 37.27 4.85
3224 3365 3.979101 TGTGACACATCATAAGCAGGA 57.021 42.857 3.56 0.00 37.14 3.86
3225 3366 4.284829 TGTGACACATCATAAGCAGGAA 57.715 40.909 3.56 0.00 37.14 3.36
3226 3367 4.650734 TGTGACACATCATAAGCAGGAAA 58.349 39.130 3.56 0.00 37.14 3.13
3227 3368 5.255687 TGTGACACATCATAAGCAGGAAAT 58.744 37.500 3.56 0.00 37.14 2.17
3228 3369 5.711506 TGTGACACATCATAAGCAGGAAATT 59.288 36.000 3.56 0.00 37.14 1.82
3229 3370 6.209192 TGTGACACATCATAAGCAGGAAATTT 59.791 34.615 3.56 0.00 37.14 1.82
3230 3371 7.392953 TGTGACACATCATAAGCAGGAAATTTA 59.607 33.333 3.56 0.00 37.14 1.40
3231 3372 8.408601 GTGACACATCATAAGCAGGAAATTTAT 58.591 33.333 0.00 0.00 37.14 1.40
3232 3373 8.407832 TGACACATCATAAGCAGGAAATTTATG 58.592 33.333 0.00 0.00 36.56 1.90
3233 3374 8.523915 ACACATCATAAGCAGGAAATTTATGA 57.476 30.769 8.17 8.17 43.78 2.15
3235 3376 9.976511 CACATCATAAGCAGGAAATTTATGATT 57.023 29.630 13.41 10.22 45.34 2.57
3239 3380 9.806203 TCATAAGCAGGAAATTTATGATTTGTG 57.194 29.630 10.53 10.17 38.31 3.33
3240 3381 9.806203 CATAAGCAGGAAATTTATGATTTGTGA 57.194 29.630 10.53 0.00 37.09 3.58
3241 3382 9.807649 ATAAGCAGGAAATTTATGATTTGTGAC 57.192 29.630 10.53 0.00 0.00 3.67
3242 3383 7.230849 AGCAGGAAATTTATGATTTGTGACA 57.769 32.000 6.98 0.00 0.00 3.58
3276 3417 6.854892 GCAGGAAATTTATGATGTTGAGATCG 59.145 38.462 6.98 0.00 0.00 3.69
3289 3430 1.140407 GAGATCGTTTCACGGAGGCG 61.140 60.000 0.00 0.00 42.81 5.52
3290 3431 2.799540 GATCGTTTCACGGAGGCGC 61.800 63.158 0.00 0.00 42.81 6.53
3293 3434 4.072088 GTTTCACGGAGGCGCGTG 62.072 66.667 7.63 7.13 37.45 5.34
3307 3468 0.042188 CGCGTGGTGAAACTGAGTTG 60.042 55.000 0.00 0.00 36.74 3.16
3308 3469 1.295792 GCGTGGTGAAACTGAGTTGA 58.704 50.000 0.00 0.00 36.74 3.18
3330 3491 3.296322 ACGTGTATTGTGCCCAATTTG 57.704 42.857 0.00 0.00 41.50 2.32
3335 3496 4.029520 TGTATTGTGCCCAATTTGCCTAT 58.970 39.130 0.00 0.00 41.50 2.57
3336 3497 5.068460 GTGTATTGTGCCCAATTTGCCTATA 59.932 40.000 0.00 0.00 41.50 1.31
3337 3498 4.942761 ATTGTGCCCAATTTGCCTATAG 57.057 40.909 0.00 0.00 38.10 1.31
3338 3499 2.031120 TGTGCCCAATTTGCCTATAGC 58.969 47.619 0.00 0.00 44.14 2.97
3340 3501 6.689734 ATTGTGCCCAATTTGCCTATAGCAT 61.690 40.000 0.00 0.00 41.91 3.79
3341 3502 8.635980 ATTGTGCCCAATTTGCCTATAGCATG 62.636 42.308 0.00 0.00 41.91 4.06
3352 3513 5.424121 GCCTATAGCATGAAACATTCGTT 57.576 39.130 0.00 0.00 42.97 3.85
3354 3515 6.954944 GCCTATAGCATGAAACATTCGTTTA 58.045 36.000 0.00 0.00 42.87 2.01
3355 3516 7.414436 GCCTATAGCATGAAACATTCGTTTAA 58.586 34.615 0.00 0.00 42.87 1.52
3399 3560 0.743097 CTACCTCCGTCCGGGTTAAG 59.257 60.000 0.00 0.00 37.07 1.85
3405 3566 1.547472 CCGTCCGGGTTAAGGGTCTT 61.547 60.000 0.00 0.00 0.00 3.01
3408 3569 0.688487 TCCGGGTTAAGGGTCTTGTG 59.312 55.000 0.00 0.00 0.00 3.33
3409 3570 0.688487 CCGGGTTAAGGGTCTTGTGA 59.312 55.000 0.00 0.00 0.00 3.58
3411 3572 1.338769 CGGGTTAAGGGTCTTGTGAGG 60.339 57.143 0.00 0.00 0.00 3.86
3412 3573 1.982958 GGGTTAAGGGTCTTGTGAGGA 59.017 52.381 0.00 0.00 0.00 3.71
3413 3574 2.374170 GGGTTAAGGGTCTTGTGAGGAA 59.626 50.000 0.00 0.00 0.00 3.36
3414 3575 3.409570 GGTTAAGGGTCTTGTGAGGAAC 58.590 50.000 0.00 0.00 0.00 3.62
3415 3576 3.409570 GTTAAGGGTCTTGTGAGGAACC 58.590 50.000 0.00 0.00 40.64 3.62
3416 3577 1.518367 AAGGGTCTTGTGAGGAACCA 58.482 50.000 0.58 0.00 42.63 3.67
3417 3578 1.518367 AGGGTCTTGTGAGGAACCAA 58.482 50.000 0.58 0.00 42.63 3.67
3418 3579 2.065799 AGGGTCTTGTGAGGAACCAAT 58.934 47.619 0.58 0.00 42.63 3.16
3423 3586 4.938226 GGTCTTGTGAGGAACCAATAGAAG 59.062 45.833 0.00 0.00 0.00 2.85
3435 3598 2.420129 CCAATAGAAGGTGGAGTTCCGG 60.420 54.545 0.00 0.00 37.03 5.14
3436 3599 2.500098 CAATAGAAGGTGGAGTTCCGGA 59.500 50.000 0.00 0.00 39.43 5.14
3462 3625 9.950496 AGGACTATTTGCATGTTTATATCTAGG 57.050 33.333 0.00 0.00 0.00 3.02
3463 3626 9.944376 GGACTATTTGCATGTTTATATCTAGGA 57.056 33.333 0.00 0.00 0.00 2.94
3468 3631 9.941325 ATTTGCATGTTTATATCTAGGAGAGAG 57.059 33.333 0.00 0.00 37.70 3.20
3469 3632 8.712228 TTGCATGTTTATATCTAGGAGAGAGA 57.288 34.615 0.00 0.00 37.70 3.10
3470 3633 8.891985 TGCATGTTTATATCTAGGAGAGAGAT 57.108 34.615 0.00 0.00 39.49 2.75
3471 3634 8.747471 TGCATGTTTATATCTAGGAGAGAGATG 58.253 37.037 0.00 0.00 36.75 2.90
3472 3635 8.196771 GCATGTTTATATCTAGGAGAGAGATGG 58.803 40.741 0.00 0.00 36.75 3.51
3473 3636 9.473007 CATGTTTATATCTAGGAGAGAGATGGA 57.527 37.037 0.00 0.00 36.75 3.41
3475 3638 9.527157 TGTTTATATCTAGGAGAGAGATGGAAG 57.473 37.037 0.00 0.00 36.75 3.46
3476 3639 8.466798 GTTTATATCTAGGAGAGAGATGGAAGC 58.533 40.741 0.00 0.00 36.75 3.86
3477 3640 2.857483 TCTAGGAGAGAGATGGAAGCG 58.143 52.381 0.00 0.00 0.00 4.68
3478 3641 2.439880 TCTAGGAGAGAGATGGAAGCGA 59.560 50.000 0.00 0.00 0.00 4.93
3479 3642 2.380064 AGGAGAGAGATGGAAGCGAT 57.620 50.000 0.00 0.00 0.00 4.58
3480 3643 2.676748 AGGAGAGAGATGGAAGCGATT 58.323 47.619 0.00 0.00 0.00 3.34
3481 3644 3.037549 AGGAGAGAGATGGAAGCGATTT 58.962 45.455 0.00 0.00 0.00 2.17
3482 3645 3.069443 AGGAGAGAGATGGAAGCGATTTC 59.931 47.826 0.00 0.00 34.93 2.17
3483 3646 3.181471 GGAGAGAGATGGAAGCGATTTCA 60.181 47.826 0.00 0.00 37.54 2.69
3484 3647 4.437239 GAGAGAGATGGAAGCGATTTCAA 58.563 43.478 0.00 0.00 37.54 2.69
3485 3648 4.836825 AGAGAGATGGAAGCGATTTCAAA 58.163 39.130 0.00 0.00 37.54 2.69
3486 3649 5.435291 AGAGAGATGGAAGCGATTTCAAAT 58.565 37.500 0.00 0.00 37.54 2.32
3487 3650 5.884792 AGAGAGATGGAAGCGATTTCAAATT 59.115 36.000 0.00 0.00 37.54 1.82
3488 3651 5.888105 AGAGATGGAAGCGATTTCAAATTG 58.112 37.500 0.00 0.00 37.54 2.32
3489 3652 5.649395 AGAGATGGAAGCGATTTCAAATTGA 59.351 36.000 0.00 0.00 37.54 2.57
3490 3653 5.644644 AGATGGAAGCGATTTCAAATTGAC 58.355 37.500 0.00 0.00 37.54 3.18
3491 3654 5.416952 AGATGGAAGCGATTTCAAATTGACT 59.583 36.000 0.00 0.00 37.54 3.41
3492 3655 4.797471 TGGAAGCGATTTCAAATTGACTG 58.203 39.130 1.04 0.00 37.54 3.51
3493 3656 4.168760 GGAAGCGATTTCAAATTGACTGG 58.831 43.478 1.04 0.00 37.54 4.00
3494 3657 4.321230 GGAAGCGATTTCAAATTGACTGGT 60.321 41.667 1.04 0.00 37.54 4.00
3495 3658 5.106317 GGAAGCGATTTCAAATTGACTGGTA 60.106 40.000 1.04 0.00 37.54 3.25
3496 3659 5.296813 AGCGATTTCAAATTGACTGGTAC 57.703 39.130 1.04 0.00 0.00 3.34
3497 3660 4.088648 GCGATTTCAAATTGACTGGTACG 58.911 43.478 1.04 0.00 0.00 3.67
3498 3661 4.088648 CGATTTCAAATTGACTGGTACGC 58.911 43.478 0.00 0.00 0.00 4.42
3499 3662 4.142902 CGATTTCAAATTGACTGGTACGCT 60.143 41.667 0.00 0.00 0.00 5.07
3500 3663 4.481930 TTTCAAATTGACTGGTACGCTG 57.518 40.909 0.00 0.00 0.00 5.18
3501 3664 2.422597 TCAAATTGACTGGTACGCTGG 58.577 47.619 0.00 0.00 0.00 4.85
3502 3665 2.151202 CAAATTGACTGGTACGCTGGT 58.849 47.619 0.00 0.00 0.00 4.00
3503 3666 2.552315 CAAATTGACTGGTACGCTGGTT 59.448 45.455 0.00 0.00 0.00 3.67
3504 3667 2.561478 ATTGACTGGTACGCTGGTTT 57.439 45.000 0.00 0.00 0.00 3.27
3505 3668 3.688694 ATTGACTGGTACGCTGGTTTA 57.311 42.857 0.00 0.00 0.00 2.01
3506 3669 3.688694 TTGACTGGTACGCTGGTTTAT 57.311 42.857 0.00 0.00 0.00 1.40
3507 3670 3.241067 TGACTGGTACGCTGGTTTATC 57.759 47.619 0.00 0.00 0.00 1.75
3508 3671 2.563620 TGACTGGTACGCTGGTTTATCA 59.436 45.455 0.00 0.00 0.00 2.15
3509 3672 3.196901 TGACTGGTACGCTGGTTTATCAT 59.803 43.478 0.00 0.00 0.00 2.45
3510 3673 3.793559 ACTGGTACGCTGGTTTATCATC 58.206 45.455 0.00 0.00 0.00 2.92
3511 3674 3.451178 ACTGGTACGCTGGTTTATCATCT 59.549 43.478 0.00 0.00 0.00 2.90
3512 3675 4.081087 ACTGGTACGCTGGTTTATCATCTT 60.081 41.667 0.00 0.00 0.00 2.40
3513 3676 4.839121 TGGTACGCTGGTTTATCATCTTT 58.161 39.130 0.00 0.00 0.00 2.52
3514 3677 5.250200 TGGTACGCTGGTTTATCATCTTTT 58.750 37.500 0.00 0.00 0.00 2.27
3515 3678 5.708230 TGGTACGCTGGTTTATCATCTTTTT 59.292 36.000 0.00 0.00 0.00 1.94
3557 3720 9.546428 AAATCATCTTTCTTTTTGGTAAAGTGG 57.454 29.630 0.00 0.00 33.07 4.00
3558 3721 7.654022 TCATCTTTCTTTTTGGTAAAGTGGT 57.346 32.000 0.00 0.00 33.07 4.16
3559 3722 8.073467 TCATCTTTCTTTTTGGTAAAGTGGTT 57.927 30.769 0.00 0.00 33.07 3.67
3560 3723 8.536175 TCATCTTTCTTTTTGGTAAAGTGGTTT 58.464 29.630 0.00 0.00 33.07 3.27
3561 3724 9.810545 CATCTTTCTTTTTGGTAAAGTGGTTTA 57.189 29.630 0.00 0.00 33.07 2.01
3571 3734 9.597170 TTTGGTAAAGTGGTTTATTTAAACACC 57.403 29.630 13.55 11.32 45.50 4.16
3572 3735 7.724287 TGGTAAAGTGGTTTATTTAAACACCC 58.276 34.615 13.55 1.40 45.50 4.61
3573 3736 7.343833 TGGTAAAGTGGTTTATTTAAACACCCA 59.656 33.333 13.55 3.59 45.50 4.51
3574 3737 8.202811 GGTAAAGTGGTTTATTTAAACACCCAA 58.797 33.333 13.55 0.00 45.50 4.12
3575 3738 9.597170 GTAAAGTGGTTTATTTAAACACCCAAA 57.403 29.630 13.55 0.00 45.50 3.28
3577 3740 9.516546 AAAGTGGTTTATTTAAACACCCAAAAA 57.483 25.926 13.55 0.00 45.50 1.94
3578 3741 9.688091 AAGTGGTTTATTTAAACACCCAAAAAT 57.312 25.926 13.55 0.00 45.50 1.82
3579 3742 9.114952 AGTGGTTTATTTAAACACCCAAAAATG 57.885 29.630 13.55 0.00 45.50 2.32
3580 3743 8.346300 GTGGTTTATTTAAACACCCAAAAATGG 58.654 33.333 13.55 0.00 45.50 3.16
3581 3744 7.013369 TGGTTTATTTAAACACCCAAAAATGGC 59.987 33.333 13.55 0.00 45.50 4.40
3582 3745 7.364200 GTTTATTTAAACACCCAAAAATGGCC 58.636 34.615 0.00 0.00 43.70 5.36
3583 3746 4.779993 TTTAAACACCCAAAAATGGCCT 57.220 36.364 3.32 0.00 0.00 5.19
3584 3747 2.928801 AAACACCCAAAAATGGCCTC 57.071 45.000 3.32 0.00 0.00 4.70
3585 3748 1.799933 AACACCCAAAAATGGCCTCA 58.200 45.000 3.32 0.00 0.00 3.86
3586 3749 1.047801 ACACCCAAAAATGGCCTCAC 58.952 50.000 3.32 0.00 0.00 3.51
3587 3750 0.321346 CACCCAAAAATGGCCTCACC 59.679 55.000 3.32 0.00 39.84 4.02
3596 3759 3.012153 TGGCCTCACCAGCTTATCT 57.988 52.632 3.32 0.00 46.36 1.98
3597 3760 0.833287 TGGCCTCACCAGCTTATCTC 59.167 55.000 3.32 0.00 46.36 2.75
3598 3761 0.107643 GGCCTCACCAGCTTATCTCC 59.892 60.000 0.00 0.00 38.86 3.71
3599 3762 0.833287 GCCTCACCAGCTTATCTCCA 59.167 55.000 0.00 0.00 0.00 3.86
3600 3763 1.210478 GCCTCACCAGCTTATCTCCAA 59.790 52.381 0.00 0.00 0.00 3.53
3601 3764 2.356125 GCCTCACCAGCTTATCTCCAAA 60.356 50.000 0.00 0.00 0.00 3.28
3602 3765 3.873801 GCCTCACCAGCTTATCTCCAAAA 60.874 47.826 0.00 0.00 0.00 2.44
3603 3766 4.530875 CCTCACCAGCTTATCTCCAAAAT 58.469 43.478 0.00 0.00 0.00 1.82
3604 3767 4.337555 CCTCACCAGCTTATCTCCAAAATG 59.662 45.833 0.00 0.00 0.00 2.32
3605 3768 4.272489 TCACCAGCTTATCTCCAAAATGG 58.728 43.478 0.00 0.00 39.43 3.16
3606 3769 4.018506 TCACCAGCTTATCTCCAAAATGGA 60.019 41.667 0.00 0.00 45.98 3.41
3614 3777 3.586843 TCCAAAATGGATGGACCCG 57.413 52.632 0.00 0.00 42.67 5.28
3615 3778 0.701731 TCCAAAATGGATGGACCCGT 59.298 50.000 0.00 0.00 42.67 5.28
3616 3779 0.817013 CCAAAATGGATGGACCCGTG 59.183 55.000 0.00 0.00 40.96 4.94
3617 3780 0.173255 CAAAATGGATGGACCCGTGC 59.827 55.000 0.00 0.00 38.00 5.34
3618 3781 0.039618 AAAATGGATGGACCCGTGCT 59.960 50.000 1.57 0.00 38.00 4.40
3619 3782 0.680921 AAATGGATGGACCCGTGCTG 60.681 55.000 1.57 0.00 38.00 4.41
3620 3783 1.561769 AATGGATGGACCCGTGCTGA 61.562 55.000 1.57 0.00 38.00 4.26
3621 3784 2.125106 GGATGGACCCGTGCTGAC 60.125 66.667 0.00 0.00 0.00 3.51
3622 3785 2.660064 GGATGGACCCGTGCTGACT 61.660 63.158 0.00 0.00 0.00 3.41
3623 3786 1.448540 GATGGACCCGTGCTGACTG 60.449 63.158 0.00 0.00 0.00 3.51
3624 3787 3.612247 ATGGACCCGTGCTGACTGC 62.612 63.158 0.00 0.00 43.25 4.40
3625 3788 4.008933 GGACCCGTGCTGACTGCT 62.009 66.667 5.87 0.00 43.37 4.24
3626 3789 2.433318 GACCCGTGCTGACTGCTC 60.433 66.667 5.87 1.24 43.37 4.26
3627 3790 3.226429 GACCCGTGCTGACTGCTCA 62.226 63.158 5.87 0.00 43.37 4.26
3628 3791 2.740055 CCCGTGCTGACTGCTCAC 60.740 66.667 5.87 0.00 43.37 3.51
3630 3793 2.355126 CGTGCTGACTGCTCACGT 60.355 61.111 5.87 0.00 45.75 4.49
3631 3794 1.081442 CGTGCTGACTGCTCACGTA 60.081 57.895 5.87 0.00 45.75 3.57
3632 3795 0.663269 CGTGCTGACTGCTCACGTAA 60.663 55.000 5.87 0.00 45.75 3.18
3633 3796 1.497991 GTGCTGACTGCTCACGTAAA 58.502 50.000 5.87 0.00 43.37 2.01
3634 3797 1.864711 GTGCTGACTGCTCACGTAAAA 59.135 47.619 5.87 0.00 43.37 1.52
3635 3798 2.286833 GTGCTGACTGCTCACGTAAAAA 59.713 45.455 5.87 0.00 43.37 1.94
3636 3799 3.058914 GTGCTGACTGCTCACGTAAAAAT 60.059 43.478 5.87 0.00 43.37 1.82
3637 3800 3.186409 TGCTGACTGCTCACGTAAAAATC 59.814 43.478 5.87 0.00 43.37 2.17
3638 3801 3.424962 GCTGACTGCTCACGTAAAAATCC 60.425 47.826 0.00 0.00 38.95 3.01
3639 3802 3.734463 TGACTGCTCACGTAAAAATCCA 58.266 40.909 0.00 0.00 0.00 3.41
3640 3803 4.323417 TGACTGCTCACGTAAAAATCCAT 58.677 39.130 0.00 0.00 0.00 3.41
3641 3804 4.759693 TGACTGCTCACGTAAAAATCCATT 59.240 37.500 0.00 0.00 0.00 3.16
3642 3805 5.240623 TGACTGCTCACGTAAAAATCCATTT 59.759 36.000 0.00 0.00 0.00 2.32
3643 3806 6.084326 ACTGCTCACGTAAAAATCCATTTT 57.916 33.333 0.00 0.00 43.52 1.82
3644 3807 6.149633 ACTGCTCACGTAAAAATCCATTTTC 58.850 36.000 0.00 0.00 41.42 2.29
3645 3808 6.016276 ACTGCTCACGTAAAAATCCATTTTCT 60.016 34.615 0.00 0.00 41.42 2.52
3646 3809 6.148948 TGCTCACGTAAAAATCCATTTTCTG 58.851 36.000 0.00 0.00 41.42 3.02
3647 3810 6.016693 TGCTCACGTAAAAATCCATTTTCTGA 60.017 34.615 0.00 0.00 41.42 3.27
3648 3811 7.029563 GCTCACGTAAAAATCCATTTTCTGAT 58.970 34.615 0.00 0.00 41.42 2.90
3649 3812 7.542130 GCTCACGTAAAAATCCATTTTCTGATT 59.458 33.333 0.00 0.00 41.42 2.57
3650 3813 9.410556 CTCACGTAAAAATCCATTTTCTGATTT 57.589 29.630 0.00 0.00 41.63 2.17
3651 3814 9.405587 TCACGTAAAAATCCATTTTCTGATTTC 57.594 29.630 0.00 0.00 39.59 2.17
3652 3815 9.190858 CACGTAAAAATCCATTTTCTGATTTCA 57.809 29.630 0.00 0.00 39.59 2.69
3653 3816 9.927668 ACGTAAAAATCCATTTTCTGATTTCAT 57.072 25.926 0.00 0.00 39.59 2.57
3657 3820 9.492973 AAAAATCCATTTTCTGATTTCATTCGT 57.507 25.926 0.00 0.00 39.59 3.85
3658 3821 9.492973 AAAATCCATTTTCTGATTTCATTCGTT 57.507 25.926 0.00 0.00 39.59 3.85
3659 3822 9.492973 AAATCCATTTTCTGATTTCATTCGTTT 57.507 25.926 0.00 0.00 36.69 3.60
3660 3823 9.492973 AATCCATTTTCTGATTTCATTCGTTTT 57.507 25.926 0.00 0.00 0.00 2.43
3661 3824 8.519492 TCCATTTTCTGATTTCATTCGTTTTC 57.481 30.769 0.00 0.00 0.00 2.29
3662 3825 8.359642 TCCATTTTCTGATTTCATTCGTTTTCT 58.640 29.630 0.00 0.00 0.00 2.52
3663 3826 8.430063 CCATTTTCTGATTTCATTCGTTTTCTG 58.570 33.333 0.00 0.00 0.00 3.02
3664 3827 7.928908 TTTTCTGATTTCATTCGTTTTCTGG 57.071 32.000 0.00 0.00 0.00 3.86
3665 3828 6.633500 TTCTGATTTCATTCGTTTTCTGGT 57.367 33.333 0.00 0.00 0.00 4.00
3666 3829 6.241207 TCTGATTTCATTCGTTTTCTGGTC 57.759 37.500 0.00 0.00 0.00 4.02
3667 3830 5.762711 TCTGATTTCATTCGTTTTCTGGTCA 59.237 36.000 0.00 0.00 0.00 4.02
3668 3831 6.430925 TCTGATTTCATTCGTTTTCTGGTCAT 59.569 34.615 0.00 0.00 0.00 3.06
3669 3832 6.611381 TGATTTCATTCGTTTTCTGGTCATC 58.389 36.000 0.00 0.00 0.00 2.92
3670 3833 6.430925 TGATTTCATTCGTTTTCTGGTCATCT 59.569 34.615 0.00 0.00 0.00 2.90
3671 3834 5.862924 TTCATTCGTTTTCTGGTCATCTC 57.137 39.130 0.00 0.00 0.00 2.75
3672 3835 4.893608 TCATTCGTTTTCTGGTCATCTCA 58.106 39.130 0.00 0.00 0.00 3.27
3673 3836 5.491070 TCATTCGTTTTCTGGTCATCTCAT 58.509 37.500 0.00 0.00 0.00 2.90
3674 3837 6.639563 TCATTCGTTTTCTGGTCATCTCATA 58.360 36.000 0.00 0.00 0.00 2.15
3675 3838 7.102993 TCATTCGTTTTCTGGTCATCTCATAA 58.897 34.615 0.00 0.00 0.00 1.90
3676 3839 7.606073 TCATTCGTTTTCTGGTCATCTCATAAA 59.394 33.333 0.00 0.00 0.00 1.40
3677 3840 7.737972 TTCGTTTTCTGGTCATCTCATAAAA 57.262 32.000 0.00 0.00 0.00 1.52
3678 3841 7.364522 TCGTTTTCTGGTCATCTCATAAAAG 57.635 36.000 0.00 0.00 0.00 2.27
3679 3842 6.371548 TCGTTTTCTGGTCATCTCATAAAAGG 59.628 38.462 0.00 0.00 32.48 3.11
3680 3843 6.149474 CGTTTTCTGGTCATCTCATAAAAGGT 59.851 38.462 0.00 0.00 29.62 3.50
3681 3844 7.530863 GTTTTCTGGTCATCTCATAAAAGGTC 58.469 38.462 0.00 0.00 0.00 3.85
3682 3845 6.373005 TTCTGGTCATCTCATAAAAGGTCA 57.627 37.500 0.00 0.00 0.00 4.02
3683 3846 6.566079 TCTGGTCATCTCATAAAAGGTCAT 57.434 37.500 0.00 0.00 0.00 3.06
3684 3847 6.351711 TCTGGTCATCTCATAAAAGGTCATG 58.648 40.000 0.00 0.00 0.00 3.07
3685 3848 6.156775 TCTGGTCATCTCATAAAAGGTCATGA 59.843 38.462 0.00 0.00 0.00 3.07
3686 3849 6.720309 TGGTCATCTCATAAAAGGTCATGAA 58.280 36.000 0.00 0.00 31.04 2.57
3687 3850 7.174413 TGGTCATCTCATAAAAGGTCATGAAA 58.826 34.615 0.00 0.00 31.04 2.69
3688 3851 7.835682 TGGTCATCTCATAAAAGGTCATGAAAT 59.164 33.333 0.00 0.00 31.04 2.17
3689 3852 8.689972 GGTCATCTCATAAAAGGTCATGAAATT 58.310 33.333 0.00 0.00 31.04 1.82
3709 3872 9.810545 TGAAATTAAAAAGAAATTGGAGAACGT 57.189 25.926 0.00 0.00 0.00 3.99
3716 3879 7.979444 AAAGAAATTGGAGAACGTAGAATGA 57.021 32.000 0.00 0.00 0.00 2.57
3717 3880 7.602517 AAGAAATTGGAGAACGTAGAATGAG 57.397 36.000 0.00 0.00 0.00 2.90
3718 3881 6.936279 AGAAATTGGAGAACGTAGAATGAGA 58.064 36.000 0.00 0.00 0.00 3.27
3719 3882 6.814146 AGAAATTGGAGAACGTAGAATGAGAC 59.186 38.462 0.00 0.00 0.00 3.36
3720 3883 4.451629 TTGGAGAACGTAGAATGAGACC 57.548 45.455 0.00 0.00 0.00 3.85
3721 3884 3.427573 TGGAGAACGTAGAATGAGACCA 58.572 45.455 0.00 0.00 0.00 4.02
3722 3885 4.023980 TGGAGAACGTAGAATGAGACCAT 58.976 43.478 0.00 0.00 33.66 3.55
3723 3886 4.466370 TGGAGAACGTAGAATGAGACCATT 59.534 41.667 0.00 0.00 45.10 3.16
3724 3887 5.655090 TGGAGAACGTAGAATGAGACCATTA 59.345 40.000 0.00 0.00 42.66 1.90
3725 3888 5.978322 GGAGAACGTAGAATGAGACCATTAC 59.022 44.000 0.00 0.00 42.66 1.89
3726 3889 6.183360 GGAGAACGTAGAATGAGACCATTACT 60.183 42.308 0.00 0.00 42.66 2.24
3727 3890 7.171630 AGAACGTAGAATGAGACCATTACTT 57.828 36.000 0.00 0.00 42.66 2.24
3728 3891 7.259161 AGAACGTAGAATGAGACCATTACTTC 58.741 38.462 0.00 0.00 42.66 3.01
3729 3892 6.525578 ACGTAGAATGAGACCATTACTTCA 57.474 37.500 0.00 0.00 42.66 3.02
3730 3893 7.113658 ACGTAGAATGAGACCATTACTTCAT 57.886 36.000 0.00 0.00 42.66 2.57
3731 3894 6.980978 ACGTAGAATGAGACCATTACTTCATG 59.019 38.462 0.00 0.00 42.66 3.07
3732 3895 7.147897 ACGTAGAATGAGACCATTACTTCATGA 60.148 37.037 0.00 0.00 42.66 3.07
3733 3896 7.168302 CGTAGAATGAGACCATTACTTCATGAC 59.832 40.741 0.00 0.00 42.66 3.06
3734 3897 6.950842 AGAATGAGACCATTACTTCATGACA 58.049 36.000 0.00 0.00 42.66 3.58
3735 3898 7.046652 AGAATGAGACCATTACTTCATGACAG 58.953 38.462 0.00 0.00 42.66 3.51
3736 3899 5.089970 TGAGACCATTACTTCATGACAGG 57.910 43.478 0.00 0.00 0.00 4.00
3737 3900 4.777366 TGAGACCATTACTTCATGACAGGA 59.223 41.667 0.00 0.00 0.00 3.86
3738 3901 5.248248 TGAGACCATTACTTCATGACAGGAA 59.752 40.000 2.12 2.12 0.00 3.36
3739 3902 5.491982 AGACCATTACTTCATGACAGGAAC 58.508 41.667 0.00 0.00 0.00 3.62
3740 3903 4.589908 ACCATTACTTCATGACAGGAACC 58.410 43.478 0.00 0.00 0.00 3.62
3741 3904 4.042809 ACCATTACTTCATGACAGGAACCA 59.957 41.667 0.00 0.00 0.00 3.67
3742 3905 4.396166 CCATTACTTCATGACAGGAACCAC 59.604 45.833 0.00 0.00 0.00 4.16
3743 3906 4.698201 TTACTTCATGACAGGAACCACA 57.302 40.909 0.00 0.00 0.00 4.17
3744 3907 3.795688 ACTTCATGACAGGAACCACAT 57.204 42.857 0.00 0.00 0.00 3.21
3745 3908 3.415212 ACTTCATGACAGGAACCACATG 58.585 45.455 0.00 14.27 40.65 3.21
3746 3909 3.181440 ACTTCATGACAGGAACCACATGT 60.181 43.478 17.31 0.00 46.36 3.21
3747 3910 2.781923 TCATGACAGGAACCACATGTG 58.218 47.619 19.31 19.31 43.68 3.21
3748 3911 2.106338 TCATGACAGGAACCACATGTGT 59.894 45.455 23.79 6.89 43.68 3.72
3749 3912 2.254546 TGACAGGAACCACATGTGTC 57.745 50.000 23.79 15.42 43.68 3.67
3750 3913 1.488393 TGACAGGAACCACATGTGTCA 59.512 47.619 23.79 15.61 43.68 3.58
3751 3914 2.106338 TGACAGGAACCACATGTGTCAT 59.894 45.455 23.79 11.13 43.68 3.06
3752 3915 2.744202 GACAGGAACCACATGTGTCATC 59.256 50.000 23.79 17.15 43.68 2.92
3753 3916 2.106338 ACAGGAACCACATGTGTCATCA 59.894 45.455 23.79 0.00 42.04 3.07
3754 3917 3.148412 CAGGAACCACATGTGTCATCAA 58.852 45.455 23.79 0.00 0.00 2.57
3755 3918 3.760151 CAGGAACCACATGTGTCATCAAT 59.240 43.478 23.79 8.87 0.00 2.57
3756 3919 4.943093 CAGGAACCACATGTGTCATCAATA 59.057 41.667 23.79 0.00 0.00 1.90
3757 3920 5.065602 CAGGAACCACATGTGTCATCAATAG 59.934 44.000 23.79 8.10 0.00 1.73
3758 3921 4.943705 GGAACCACATGTGTCATCAATAGT 59.056 41.667 23.79 8.73 0.00 2.12
3759 3922 5.065218 GGAACCACATGTGTCATCAATAGTC 59.935 44.000 23.79 6.12 0.00 2.59
3760 3923 5.426689 ACCACATGTGTCATCAATAGTCT 57.573 39.130 23.79 0.00 0.00 3.24
3761 3924 6.544928 ACCACATGTGTCATCAATAGTCTA 57.455 37.500 23.79 0.00 0.00 2.59
3762 3925 7.129457 ACCACATGTGTCATCAATAGTCTAT 57.871 36.000 23.79 0.00 0.00 1.98
3763 3926 8.250143 ACCACATGTGTCATCAATAGTCTATA 57.750 34.615 23.79 0.00 0.00 1.31
3764 3927 8.144478 ACCACATGTGTCATCAATAGTCTATAC 58.856 37.037 23.79 0.00 0.00 1.47
3765 3928 8.143835 CCACATGTGTCATCAATAGTCTATACA 58.856 37.037 23.79 0.00 0.00 2.29
3766 3929 9.533253 CACATGTGTCATCAATAGTCTATACAA 57.467 33.333 18.03 0.00 0.00 2.41
3769 3932 9.716531 ATGTGTCATCAATAGTCTATACAATGG 57.283 33.333 0.00 0.00 0.00 3.16
3770 3933 8.923270 TGTGTCATCAATAGTCTATACAATGGA 58.077 33.333 0.00 0.00 0.00 3.41
3771 3934 9.764363 GTGTCATCAATAGTCTATACAATGGAA 57.236 33.333 0.00 0.00 0.00 3.53
3772 3935 9.764363 TGTCATCAATAGTCTATACAATGGAAC 57.236 33.333 0.00 0.00 0.00 3.62
3773 3936 9.988815 GTCATCAATAGTCTATACAATGGAACT 57.011 33.333 0.00 0.00 0.00 3.01
3774 3937 9.987272 TCATCAATAGTCTATACAATGGAACTG 57.013 33.333 0.00 0.00 0.00 3.16
3775 3938 9.987272 CATCAATAGTCTATACAATGGAACTGA 57.013 33.333 0.00 0.00 0.00 3.41
3776 3939 9.988815 ATCAATAGTCTATACAATGGAACTGAC 57.011 33.333 0.00 0.00 0.00 3.51
3777 3940 8.135529 TCAATAGTCTATACAATGGAACTGACG 58.864 37.037 0.00 0.00 0.00 4.35
3778 3941 5.263968 AGTCTATACAATGGAACTGACGG 57.736 43.478 0.00 0.00 0.00 4.79
3779 3942 4.099573 AGTCTATACAATGGAACTGACGGG 59.900 45.833 0.00 0.00 0.00 5.28
3780 3943 2.710096 ATACAATGGAACTGACGGGG 57.290 50.000 0.00 0.00 0.00 5.73
3781 3944 0.035820 TACAATGGAACTGACGGGGC 60.036 55.000 0.00 0.00 0.00 5.80
3782 3945 1.002134 CAATGGAACTGACGGGGCT 60.002 57.895 0.00 0.00 0.00 5.19
3783 3946 0.609131 CAATGGAACTGACGGGGCTT 60.609 55.000 0.00 0.00 0.00 4.35
3784 3947 0.322546 AATGGAACTGACGGGGCTTC 60.323 55.000 0.00 0.00 0.00 3.86
3785 3948 2.046217 GGAACTGACGGGGCTTCC 60.046 66.667 0.00 0.00 0.00 3.46
3786 3949 2.593956 GGAACTGACGGGGCTTCCT 61.594 63.158 0.00 0.00 31.11 3.36
3787 3950 1.079057 GAACTGACGGGGCTTCCTC 60.079 63.158 0.00 0.00 0.00 3.71
3788 3951 2.837371 GAACTGACGGGGCTTCCTCG 62.837 65.000 3.23 3.23 0.00 4.63
3789 3952 4.148825 CTGACGGGGCTTCCTCGG 62.149 72.222 10.12 0.00 0.00 4.63
3791 3954 4.452733 GACGGGGCTTCCTCGGTG 62.453 72.222 10.12 0.00 0.00 4.94
3797 3960 4.344865 GCTTCCTCGGTGCCCCAA 62.345 66.667 0.00 0.00 0.00 4.12
3798 3961 2.359975 CTTCCTCGGTGCCCCAAC 60.360 66.667 0.00 0.00 0.00 3.77
3799 3962 3.172106 TTCCTCGGTGCCCCAACA 61.172 61.111 0.00 0.00 0.00 3.33
3800 3963 3.190738 TTCCTCGGTGCCCCAACAG 62.191 63.158 0.00 0.00 0.00 3.16
3801 3964 3.953775 CCTCGGTGCCCCAACAGT 61.954 66.667 0.00 0.00 0.00 3.55
3802 3965 2.113139 CTCGGTGCCCCAACAGTT 59.887 61.111 0.00 0.00 0.00 3.16
3803 3966 1.966451 CTCGGTGCCCCAACAGTTC 60.966 63.158 0.00 0.00 0.00 3.01
3804 3967 3.353836 CGGTGCCCCAACAGTTCG 61.354 66.667 0.00 0.00 0.00 3.95
3805 3968 3.670377 GGTGCCCCAACAGTTCGC 61.670 66.667 0.00 0.00 0.00 4.70
3806 3969 2.594592 GTGCCCCAACAGTTCGCT 60.595 61.111 0.00 0.00 0.00 4.93
3807 3970 2.281484 TGCCCCAACAGTTCGCTC 60.281 61.111 0.00 0.00 0.00 5.03
3808 3971 3.423154 GCCCCAACAGTTCGCTCG 61.423 66.667 0.00 0.00 0.00 5.03
3809 3972 3.423154 CCCCAACAGTTCGCTCGC 61.423 66.667 0.00 0.00 0.00 5.03
3810 3973 2.357517 CCCAACAGTTCGCTCGCT 60.358 61.111 0.00 0.00 0.00 4.93
3811 3974 1.961277 CCCAACAGTTCGCTCGCTT 60.961 57.895 0.00 0.00 0.00 4.68
3812 3975 1.493311 CCAACAGTTCGCTCGCTTC 59.507 57.895 0.00 0.00 0.00 3.86
3813 3976 0.946221 CCAACAGTTCGCTCGCTTCT 60.946 55.000 0.00 0.00 0.00 2.85
3814 3977 0.436531 CAACAGTTCGCTCGCTTCTC 59.563 55.000 0.00 0.00 0.00 2.87
3815 3978 0.315568 AACAGTTCGCTCGCTTCTCT 59.684 50.000 0.00 0.00 0.00 3.10
3816 3979 1.166129 ACAGTTCGCTCGCTTCTCTA 58.834 50.000 0.00 0.00 0.00 2.43
3817 3980 1.746220 ACAGTTCGCTCGCTTCTCTAT 59.254 47.619 0.00 0.00 0.00 1.98
3818 3981 2.223386 ACAGTTCGCTCGCTTCTCTATC 60.223 50.000 0.00 0.00 0.00 2.08
3819 3982 2.017782 AGTTCGCTCGCTTCTCTATCA 58.982 47.619 0.00 0.00 0.00 2.15
3820 3983 2.423892 AGTTCGCTCGCTTCTCTATCAA 59.576 45.455 0.00 0.00 0.00 2.57
3821 3984 2.765108 TCGCTCGCTTCTCTATCAAG 57.235 50.000 0.00 0.00 0.00 3.02
3822 3985 2.289565 TCGCTCGCTTCTCTATCAAGA 58.710 47.619 0.00 0.00 0.00 3.02
3833 3996 2.548904 CTCTATCAAGAGCTGGCAATGC 59.451 50.000 0.00 0.00 42.79 3.56
3834 3997 4.605718 CTCTATCAAGAGCTGGCAATGCC 61.606 52.174 18.95 18.95 45.11 4.40
3843 4006 4.197498 GGCAATGCCGCATTCGCT 62.197 61.111 25.82 5.30 39.62 4.93
3844 4007 2.202650 GCAATGCCGCATTCGCTT 60.203 55.556 22.57 2.66 31.05 4.68
3845 4008 1.806758 GCAATGCCGCATTCGCTTT 60.807 52.632 22.57 2.05 31.05 3.51
3846 4009 1.992947 CAATGCCGCATTCGCTTTG 59.007 52.632 15.85 1.69 31.05 2.77
3847 4010 0.733566 CAATGCCGCATTCGCTTTGT 60.734 50.000 15.85 0.00 31.05 2.83
3848 4011 0.733566 AATGCCGCATTCGCTTTGTG 60.734 50.000 13.00 0.00 35.30 3.33
3849 4012 1.865788 ATGCCGCATTCGCTTTGTGT 61.866 50.000 0.00 0.00 35.30 3.72
3850 4013 1.797537 GCCGCATTCGCTTTGTGTC 60.798 57.895 0.00 0.00 35.30 3.67
3851 4014 1.573932 CCGCATTCGCTTTGTGTCA 59.426 52.632 0.00 0.00 35.30 3.58
3852 4015 0.453282 CCGCATTCGCTTTGTGTCAG 60.453 55.000 0.00 0.00 35.30 3.51
3853 4016 0.512518 CGCATTCGCTTTGTGTCAGA 59.487 50.000 0.00 0.00 35.30 3.27
3854 4017 1.069973 CGCATTCGCTTTGTGTCAGAA 60.070 47.619 0.00 0.00 35.30 3.02
3855 4018 2.310577 GCATTCGCTTTGTGTCAGAAC 58.689 47.619 0.00 0.00 34.30 3.01
3856 4019 2.031682 GCATTCGCTTTGTGTCAGAACT 60.032 45.455 0.00 0.00 34.30 3.01
3857 4020 3.803555 CATTCGCTTTGTGTCAGAACTC 58.196 45.455 0.00 0.00 0.00 3.01
3858 4021 1.865865 TCGCTTTGTGTCAGAACTCC 58.134 50.000 0.00 0.00 0.00 3.85
3859 4022 1.412710 TCGCTTTGTGTCAGAACTCCT 59.587 47.619 0.00 0.00 0.00 3.69
3860 4023 2.626266 TCGCTTTGTGTCAGAACTCCTA 59.374 45.455 0.00 0.00 0.00 2.94
3861 4024 3.069016 TCGCTTTGTGTCAGAACTCCTAA 59.931 43.478 0.00 0.00 0.00 2.69
3862 4025 3.807622 CGCTTTGTGTCAGAACTCCTAAA 59.192 43.478 0.00 0.00 0.00 1.85
3863 4026 4.452455 CGCTTTGTGTCAGAACTCCTAAAT 59.548 41.667 0.00 0.00 0.00 1.40
3864 4027 5.615544 CGCTTTGTGTCAGAACTCCTAAATG 60.616 44.000 0.00 0.00 0.00 2.32
3865 4028 5.470098 GCTTTGTGTCAGAACTCCTAAATGA 59.530 40.000 0.00 0.00 0.00 2.57
3866 4029 6.150140 GCTTTGTGTCAGAACTCCTAAATGAT 59.850 38.462 0.00 0.00 0.00 2.45
3867 4030 7.334421 GCTTTGTGTCAGAACTCCTAAATGATA 59.666 37.037 0.00 0.00 0.00 2.15
3868 4031 9.219603 CTTTGTGTCAGAACTCCTAAATGATAA 57.780 33.333 0.00 0.00 0.00 1.75
3869 4032 9.739276 TTTGTGTCAGAACTCCTAAATGATAAT 57.261 29.630 0.00 0.00 0.00 1.28
3870 4033 8.722480 TGTGTCAGAACTCCTAAATGATAATG 57.278 34.615 0.00 0.00 0.00 1.90
3871 4034 7.770433 TGTGTCAGAACTCCTAAATGATAATGG 59.230 37.037 0.00 0.00 0.00 3.16
3872 4035 7.987458 GTGTCAGAACTCCTAAATGATAATGGA 59.013 37.037 0.00 0.00 0.00 3.41
3873 4036 8.717717 TGTCAGAACTCCTAAATGATAATGGAT 58.282 33.333 0.00 0.00 0.00 3.41
3874 4037 9.213799 GTCAGAACTCCTAAATGATAATGGATC 57.786 37.037 0.00 0.00 34.84 3.36
3888 4051 8.211030 TGATAATGGATCATGGAACTATGAGT 57.789 34.615 6.94 0.00 39.78 3.41
3889 4052 8.663167 TGATAATGGATCATGGAACTATGAGTT 58.337 33.333 6.94 0.00 39.32 3.01
3890 4053 8.859236 ATAATGGATCATGGAACTATGAGTTG 57.141 34.615 6.94 0.00 38.80 3.16
3891 4054 4.454678 TGGATCATGGAACTATGAGTTGC 58.545 43.478 4.11 4.11 45.29 4.17
3892 4055 4.164796 TGGATCATGGAACTATGAGTTGCT 59.835 41.667 11.43 0.00 45.30 3.91
3893 4056 5.366477 TGGATCATGGAACTATGAGTTGCTA 59.634 40.000 11.43 0.43 45.30 3.49
3894 4057 5.698545 GGATCATGGAACTATGAGTTGCTAC 59.301 44.000 11.43 0.00 45.30 3.58
3895 4058 5.675684 TCATGGAACTATGAGTTGCTACA 57.324 39.130 11.43 0.38 45.30 2.74
3896 4059 6.048732 TCATGGAACTATGAGTTGCTACAA 57.951 37.500 11.43 0.00 45.30 2.41
3897 4060 6.472016 TCATGGAACTATGAGTTGCTACAAA 58.528 36.000 11.43 0.00 45.30 2.83
3898 4061 6.595326 TCATGGAACTATGAGTTGCTACAAAG 59.405 38.462 11.43 0.00 45.30 2.77
3899 4062 5.865085 TGGAACTATGAGTTGCTACAAAGT 58.135 37.500 11.43 0.00 45.30 2.66
3900 4063 6.296026 TGGAACTATGAGTTGCTACAAAGTT 58.704 36.000 11.43 4.50 45.30 2.66
3901 4064 7.446769 TGGAACTATGAGTTGCTACAAAGTTA 58.553 34.615 11.43 0.00 45.30 2.24
3902 4065 7.386848 TGGAACTATGAGTTGCTACAAAGTTAC 59.613 37.037 11.43 5.87 45.30 2.50
3903 4066 7.603024 GGAACTATGAGTTGCTACAAAGTTACT 59.397 37.037 0.13 0.00 42.35 2.24
3904 4067 8.904099 AACTATGAGTTGCTACAAAGTTACTT 57.096 30.769 0.13 0.00 37.00 2.24
3905 4068 8.535690 ACTATGAGTTGCTACAAAGTTACTTC 57.464 34.615 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.382546 ACATTCATATTTGGTCTGCTGGC 59.617 43.478 0.00 0.00 0.00 4.85
28 29 3.451141 TTTGGTTTTAGCTTGTGGCAG 57.549 42.857 0.00 0.00 44.79 4.85
31 32 6.924111 ACAGATATTTGGTTTTAGCTTGTGG 58.076 36.000 0.00 0.00 0.00 4.17
37 38 6.599638 AGAGGTGACAGATATTTGGTTTTAGC 59.400 38.462 0.00 0.00 0.00 3.09
51 52 7.894364 AGGTAGATTTTACTTAGAGGTGACAGA 59.106 37.037 0.00 0.00 0.00 3.41
133 134 5.221087 GGTGAAAGTGATTTTTCGGTTGGTA 60.221 40.000 0.00 0.00 39.39 3.25
145 146 4.442706 CGTAGGCATAGGTGAAAGTGATT 58.557 43.478 0.00 0.00 0.00 2.57
166 167 3.965292 TCGTCTTATTAGACCTGAGCG 57.035 47.619 6.30 0.00 46.63 5.03
170 171 6.392625 TTCTGGATCGTCTTATTAGACCTG 57.607 41.667 6.30 0.00 46.63 4.00
177 178 4.202367 GGACCCATTCTGGATCGTCTTATT 60.202 45.833 0.00 0.00 40.96 1.40
178 179 3.325135 GGACCCATTCTGGATCGTCTTAT 59.675 47.826 0.00 0.00 40.96 1.73
200 201 2.584608 CCCACGGCTAGGTCTTGG 59.415 66.667 0.00 0.00 0.00 3.61
233 235 4.500716 GGGATTTTTCCTTCGTCTTTTGCA 60.501 41.667 0.00 0.00 0.00 4.08
240 242 2.007608 CTCGGGGATTTTTCCTTCGTC 58.992 52.381 0.00 0.00 0.00 4.20
310 312 2.527123 TTCTACCGTGCACCCCCA 60.527 61.111 12.15 0.00 0.00 4.96
438 440 2.748465 GCTATAGCCCATCGGTTTGGTT 60.748 50.000 14.13 0.00 34.77 3.67
470 480 1.528292 GCTCTCTCCGGTGACTGTGT 61.528 60.000 0.00 0.00 0.00 3.72
471 481 1.214062 GCTCTCTCCGGTGACTGTG 59.786 63.158 0.00 0.00 0.00 3.66
485 499 3.247648 ACTGCACTGGGCTGCTCT 61.248 61.111 8.82 0.00 44.55 4.09
490 504 2.851102 ACTGGACTGCACTGGGCT 60.851 61.111 2.50 0.00 45.15 5.19
498 512 0.326264 AATGGACTGGACTGGACTGC 59.674 55.000 0.00 0.00 0.00 4.40
1028 1106 4.109675 GCACGGTGTGGGGGCTAT 62.110 66.667 10.24 0.00 33.64 2.97
1042 1121 4.135493 GACGAAGCGCGAAGGCAC 62.135 66.667 12.10 0.00 44.57 5.01
1045 1124 2.881352 GAGGACGAAGCGCGAAGG 60.881 66.667 12.10 0.00 44.57 3.46
1047 1126 3.371063 AGGAGGACGAAGCGCGAA 61.371 61.111 12.10 0.00 44.57 4.70
1048 1127 4.116328 CAGGAGGACGAAGCGCGA 62.116 66.667 12.10 0.00 44.57 5.87
1084 1163 1.107114 TCAAAACCGCAGAAAAGGCA 58.893 45.000 0.00 0.00 0.00 4.75
1086 1165 4.367450 TCAAATCAAAACCGCAGAAAAGG 58.633 39.130 0.00 0.00 0.00 3.11
1129 1208 0.802222 CACGATTCGCGATCCACACT 60.802 55.000 10.88 0.00 44.57 3.55
1225 1304 1.666054 GAGCTGAGATTCCAAGCAGG 58.334 55.000 0.00 0.00 39.47 4.85
1226 1305 1.209990 AGGAGCTGAGATTCCAAGCAG 59.790 52.381 0.00 0.00 35.88 4.24
1227 1306 1.065636 CAGGAGCTGAGATTCCAAGCA 60.066 52.381 0.00 0.00 35.88 3.91
1228 1307 1.666054 CAGGAGCTGAGATTCCAAGC 58.334 55.000 0.00 0.93 35.88 4.01
1229 1308 1.666054 GCAGGAGCTGAGATTCCAAG 58.334 55.000 0.00 0.58 35.88 3.61
1230 1309 3.869623 GCAGGAGCTGAGATTCCAA 57.130 52.632 0.00 0.00 35.88 3.53
1244 1323 1.666054 GAGCAGAGATTCCAAGCAGG 58.334 55.000 0.00 0.00 39.47 4.85
1245 1324 1.209990 AGGAGCAGAGATTCCAAGCAG 59.790 52.381 0.00 0.00 35.88 4.24
1246 1325 1.065636 CAGGAGCAGAGATTCCAAGCA 60.066 52.381 0.00 0.00 35.88 3.91
1247 1326 1.666054 CAGGAGCAGAGATTCCAAGC 58.334 55.000 0.00 0.00 35.88 4.01
1248 1327 1.209990 AGCAGGAGCAGAGATTCCAAG 59.790 52.381 0.00 0.00 45.49 3.61
1249 1328 1.283347 AGCAGGAGCAGAGATTCCAA 58.717 50.000 0.00 0.00 45.49 3.53
1250 1329 1.065636 CAAGCAGGAGCAGAGATTCCA 60.066 52.381 0.00 0.00 45.49 3.53
1251 1330 1.666054 CAAGCAGGAGCAGAGATTCC 58.334 55.000 0.00 0.00 45.49 3.01
1252 1331 1.209019 TCCAAGCAGGAGCAGAGATTC 59.791 52.381 0.00 0.00 43.07 2.52
1253 1332 1.283347 TCCAAGCAGGAGCAGAGATT 58.717 50.000 0.00 0.00 43.07 2.40
1254 1333 3.003027 TCCAAGCAGGAGCAGAGAT 57.997 52.632 0.00 0.00 43.07 2.75
1255 1334 4.547166 TCCAAGCAGGAGCAGAGA 57.453 55.556 0.00 0.00 43.07 3.10
1308 1400 1.142965 GCAACCACACACCAAACCC 59.857 57.895 0.00 0.00 0.00 4.11
1311 1403 0.323816 TCCTGCAACCACACACCAAA 60.324 50.000 0.00 0.00 0.00 3.28
1537 1630 3.243068 ACGAATGGACAGACAAGTTTTGC 60.243 43.478 0.00 0.00 0.00 3.68
1587 1689 5.163478 ACAGTATTACATCTACCAACGTCCC 60.163 44.000 0.00 0.00 0.00 4.46
1605 1708 6.775629 ACCCACAAGTCAAAATAACACAGTAT 59.224 34.615 0.00 0.00 0.00 2.12
1606 1709 6.123651 ACCCACAAGTCAAAATAACACAGTA 58.876 36.000 0.00 0.00 0.00 2.74
1607 1710 4.953579 ACCCACAAGTCAAAATAACACAGT 59.046 37.500 0.00 0.00 0.00 3.55
1612 1715 6.019779 TGCATACCCACAAGTCAAAATAAC 57.980 37.500 0.00 0.00 0.00 1.89
1639 1742 5.472478 TGAAGTTAAGACTCGCTCACTTAGA 59.528 40.000 0.00 0.00 34.21 2.10
1721 1830 4.444022 GCCCTAATCATGCAAGAAGAGAGA 60.444 45.833 0.00 0.00 0.00 3.10
1860 1990 3.074412 AGCAACAATGGTTCTTCCTACG 58.926 45.455 0.00 0.00 34.21 3.51
1871 2001 6.686630 TCAGGTAAAAACATAGCAACAATGG 58.313 36.000 0.00 0.00 0.00 3.16
1914 2044 4.047822 CGTTGCAACATAAAGGAAAAGCA 58.952 39.130 28.01 0.00 0.00 3.91
1917 2047 5.000012 ACACGTTGCAACATAAAGGAAAA 58.000 34.783 28.01 0.00 0.00 2.29
1992 2122 8.790718 TCGAACTTGAACTAGTCAACTACTTAT 58.209 33.333 0.00 0.00 41.47 1.73
1994 2124 7.035840 TCGAACTTGAACTAGTCAACTACTT 57.964 36.000 0.00 0.00 41.47 2.24
2010 2140 4.183865 TGTATGCAGAGGAATCGAACTTG 58.816 43.478 0.00 0.00 0.00 3.16
2037 2167 9.699703 AACAAAGTTTTTGCAGAAACTAAAGTA 57.300 25.926 29.31 0.00 46.23 2.24
2284 2414 9.744468 AACAAGGAATAGTTATGTCAAACAAAC 57.256 29.630 0.00 0.00 0.00 2.93
2302 2432 6.239008 CCACAAAAGAAGCTATGAACAAGGAA 60.239 38.462 0.00 0.00 0.00 3.36
2308 2438 4.479619 CAGCCACAAAAGAAGCTATGAAC 58.520 43.478 0.00 0.00 33.33 3.18
2360 2492 3.931578 AGCCTTGCTCTACAGTACAAAG 58.068 45.455 0.00 0.00 30.62 2.77
2384 2516 1.276138 TCATGAGCAATGACGACCAGT 59.724 47.619 0.00 0.00 40.50 4.00
2396 2528 2.583024 TTGGGTCAACATCATGAGCA 57.417 45.000 0.09 0.00 46.89 4.26
2459 2592 4.526970 CCTTAACAATGCAGTATGGGACT 58.473 43.478 0.00 0.00 39.82 3.85
2704 2839 6.429078 GGACTGCATATCAATGATAGCAAAGA 59.571 38.462 19.79 0.00 34.84 2.52
2824 2962 1.811266 CGACTTGGAGCCCATGACG 60.811 63.158 12.18 12.92 39.30 4.35
2914 3053 8.037166 TGGCATATGCTCTGACAATACTTATAG 58.963 37.037 26.12 0.00 41.70 1.31
2919 3058 4.694760 TGGCATATGCTCTGACAATACT 57.305 40.909 26.12 0.00 41.70 2.12
2920 3059 4.758674 ACATGGCATATGCTCTGACAATAC 59.241 41.667 26.12 6.95 41.70 1.89
2921 3060 4.976864 ACATGGCATATGCTCTGACAATA 58.023 39.130 26.12 3.71 41.70 1.90
2922 3061 3.828921 ACATGGCATATGCTCTGACAAT 58.171 40.909 26.12 6.46 41.70 2.71
2923 3062 3.286329 ACATGGCATATGCTCTGACAA 57.714 42.857 26.12 5.25 41.70 3.18
2959 3100 3.319137 TCCTCGTCAAAATCAGGACAG 57.681 47.619 0.00 0.00 33.66 3.51
3031 3172 0.318762 AGTCTGGAGAACGGAACAGC 59.681 55.000 0.00 0.00 35.91 4.40
3052 3193 5.065731 GGTAAACCTCATCTGATCTTTGCAG 59.934 44.000 0.00 0.00 34.71 4.41
3118 3259 7.201696 GGAAGATGTCAAACACAACTAACTTCA 60.202 37.037 0.00 0.00 37.14 3.02
3119 3260 7.132863 GGAAGATGTCAAACACAACTAACTTC 58.867 38.462 0.00 0.00 37.14 3.01
3125 3266 5.650543 GTTTGGAAGATGTCAAACACAACT 58.349 37.500 12.28 0.00 46.88 3.16
3145 3286 1.203237 ACCAAAAGCCAGCCAAGTTT 58.797 45.000 0.00 0.00 0.00 2.66
3155 3296 4.152223 GTCATTGCATGTTAACCAAAAGCC 59.848 41.667 2.48 0.00 0.00 4.35
3157 3298 5.116983 GTCGTCATTGCATGTTAACCAAAAG 59.883 40.000 2.48 0.00 0.00 2.27
3182 3323 2.975410 TTCGCAAACAGATTGAGCTG 57.025 45.000 0.00 0.00 41.85 4.24
3198 3339 5.630061 TGCTTATGATGTGTCACAAATTCG 58.370 37.500 10.28 3.55 37.14 3.34
3213 3354 9.806203 CACAAATCATAAATTTCCTGCTTATGA 57.194 29.630 0.00 6.28 42.93 2.15
3214 3355 9.806203 TCACAAATCATAAATTTCCTGCTTATG 57.194 29.630 0.00 0.00 35.33 1.90
3215 3356 9.807649 GTCACAAATCATAAATTTCCTGCTTAT 57.192 29.630 0.00 0.00 0.00 1.73
3216 3357 8.801299 TGTCACAAATCATAAATTTCCTGCTTA 58.199 29.630 0.00 0.00 0.00 3.09
3217 3358 7.599998 GTGTCACAAATCATAAATTTCCTGCTT 59.400 33.333 0.00 0.00 0.00 3.91
3218 3359 7.092716 GTGTCACAAATCATAAATTTCCTGCT 58.907 34.615 0.00 0.00 0.00 4.24
3219 3360 6.867816 TGTGTCACAAATCATAAATTTCCTGC 59.132 34.615 2.31 0.00 0.00 4.85
3220 3361 8.991243 ATGTGTCACAAATCATAAATTTCCTG 57.009 30.769 10.28 0.00 0.00 3.86
3221 3362 8.805175 TGATGTGTCACAAATCATAAATTTCCT 58.195 29.630 6.55 0.00 33.67 3.36
3222 3363 8.984891 TGATGTGTCACAAATCATAAATTTCC 57.015 30.769 6.55 0.00 33.67 3.13
3229 3370 7.012610 CCTGCTTATGATGTGTCACAAATCATA 59.987 37.037 22.28 22.28 44.26 2.15
3230 3371 6.183360 CCTGCTTATGATGTGTCACAAATCAT 60.183 38.462 24.17 24.17 46.68 2.45
3231 3372 5.124297 CCTGCTTATGATGTGTCACAAATCA 59.876 40.000 13.29 13.29 41.58 2.57
3232 3373 5.355071 TCCTGCTTATGATGTGTCACAAATC 59.645 40.000 10.28 0.29 37.14 2.17
3233 3374 5.255687 TCCTGCTTATGATGTGTCACAAAT 58.744 37.500 10.28 9.46 37.14 2.32
3234 3375 4.650734 TCCTGCTTATGATGTGTCACAAA 58.349 39.130 10.28 1.78 37.14 2.83
3235 3376 4.284829 TCCTGCTTATGATGTGTCACAA 57.715 40.909 10.28 0.00 37.14 3.33
3236 3377 3.979101 TCCTGCTTATGATGTGTCACA 57.021 42.857 8.40 8.40 37.14 3.58
3237 3378 5.824904 ATTTCCTGCTTATGATGTGTCAC 57.175 39.130 0.00 0.00 37.14 3.67
3238 3379 6.839124 AAATTTCCTGCTTATGATGTGTCA 57.161 33.333 0.00 0.00 39.04 3.58
3239 3380 8.623903 TCATAAATTTCCTGCTTATGATGTGTC 58.376 33.333 0.00 0.00 37.21 3.67
3240 3381 8.523915 TCATAAATTTCCTGCTTATGATGTGT 57.476 30.769 0.00 0.00 37.21 3.72
3289 3430 1.295792 TCAACTCAGTTTCACCACGC 58.704 50.000 0.00 0.00 0.00 5.34
3290 3431 3.680789 GTTTCAACTCAGTTTCACCACG 58.319 45.455 0.00 0.00 0.00 4.94
3291 3432 3.126343 ACGTTTCAACTCAGTTTCACCAC 59.874 43.478 0.00 0.00 0.00 4.16
3293 3434 3.126343 ACACGTTTCAACTCAGTTTCACC 59.874 43.478 0.00 0.00 0.00 4.02
3294 3435 4.336532 ACACGTTTCAACTCAGTTTCAC 57.663 40.909 0.00 0.00 0.00 3.18
3307 3468 3.569250 ATTGGGCACAATACACGTTTC 57.431 42.857 13.85 0.00 45.17 2.78
3308 3469 4.054671 CAAATTGGGCACAATACACGTTT 58.945 39.130 16.06 1.85 46.25 3.60
3330 3491 5.424121 AACGAATGTTTCATGCTATAGGC 57.576 39.130 1.04 0.00 36.80 3.93
3361 3522 8.148351 GGAGGTAGTGTATATAAATGCAACAGA 58.852 37.037 0.00 0.00 28.83 3.41
3364 3525 6.927381 ACGGAGGTAGTGTATATAAATGCAAC 59.073 38.462 0.00 0.00 28.83 4.17
3366 3527 6.294899 GGACGGAGGTAGTGTATATAAATGCA 60.295 42.308 0.00 0.00 0.00 3.96
3369 3530 5.416952 CCGGACGGAGGTAGTGTATATAAAT 59.583 44.000 4.40 0.00 37.50 1.40
3399 3560 2.586648 ATTGGTTCCTCACAAGACCC 57.413 50.000 0.00 0.00 0.00 4.46
3405 3566 3.009033 CCACCTTCTATTGGTTCCTCACA 59.991 47.826 0.00 0.00 35.28 3.58
3408 3569 3.519913 ACTCCACCTTCTATTGGTTCCTC 59.480 47.826 0.00 0.00 35.28 3.71
3409 3570 3.532102 ACTCCACCTTCTATTGGTTCCT 58.468 45.455 0.00 0.00 35.28 3.36
3411 3572 4.262617 GGAACTCCACCTTCTATTGGTTC 58.737 47.826 0.00 0.00 35.28 3.62
3412 3573 3.307480 CGGAACTCCACCTTCTATTGGTT 60.307 47.826 0.00 0.00 35.28 3.67
3413 3574 2.236395 CGGAACTCCACCTTCTATTGGT 59.764 50.000 0.00 0.00 38.53 3.67
3414 3575 2.420129 CCGGAACTCCACCTTCTATTGG 60.420 54.545 0.00 0.00 35.14 3.16
3415 3576 2.500098 TCCGGAACTCCACCTTCTATTG 59.500 50.000 0.00 0.00 35.14 1.90
3416 3577 2.766828 CTCCGGAACTCCACCTTCTATT 59.233 50.000 5.23 0.00 35.14 1.73
3417 3578 2.389715 CTCCGGAACTCCACCTTCTAT 58.610 52.381 5.23 0.00 35.14 1.98
3418 3579 1.618888 CCTCCGGAACTCCACCTTCTA 60.619 57.143 5.23 0.00 35.14 2.10
3423 3586 0.324091 TAGTCCTCCGGAACTCCACC 60.324 60.000 12.10 0.00 31.38 4.61
3436 3599 9.950496 CCTAGATATAAACATGCAAATAGTCCT 57.050 33.333 0.00 0.00 0.00 3.85
3444 3607 8.712228 TCTCTCTCCTAGATATAAACATGCAA 57.288 34.615 0.00 0.00 32.41 4.08
3461 3624 3.181471 TGAAATCGCTTCCATCTCTCTCC 60.181 47.826 0.00 0.00 32.53 3.71
3462 3625 4.052159 TGAAATCGCTTCCATCTCTCTC 57.948 45.455 0.00 0.00 32.53 3.20
3463 3626 4.478206 TTGAAATCGCTTCCATCTCTCT 57.522 40.909 0.00 0.00 32.53 3.10
3464 3627 5.747951 ATTTGAAATCGCTTCCATCTCTC 57.252 39.130 0.00 0.00 32.53 3.20
3465 3628 5.649395 TCAATTTGAAATCGCTTCCATCTCT 59.351 36.000 0.00 0.00 32.53 3.10
3466 3629 5.741040 GTCAATTTGAAATCGCTTCCATCTC 59.259 40.000 0.00 0.00 32.53 2.75
3467 3630 5.416952 AGTCAATTTGAAATCGCTTCCATCT 59.583 36.000 0.00 0.00 32.53 2.90
3468 3631 5.514204 CAGTCAATTTGAAATCGCTTCCATC 59.486 40.000 0.00 0.00 32.53 3.51
3469 3632 5.404946 CAGTCAATTTGAAATCGCTTCCAT 58.595 37.500 0.00 0.00 32.53 3.41
3470 3633 4.321156 CCAGTCAATTTGAAATCGCTTCCA 60.321 41.667 0.00 0.00 32.53 3.53
3471 3634 4.168760 CCAGTCAATTTGAAATCGCTTCC 58.831 43.478 0.00 0.00 32.53 3.46
3472 3635 4.798574 ACCAGTCAATTTGAAATCGCTTC 58.201 39.130 0.00 0.00 34.31 3.86
3473 3636 4.853924 ACCAGTCAATTTGAAATCGCTT 57.146 36.364 0.00 0.00 0.00 4.68
3474 3637 4.142902 CGTACCAGTCAATTTGAAATCGCT 60.143 41.667 0.00 0.00 0.00 4.93
3475 3638 4.088648 CGTACCAGTCAATTTGAAATCGC 58.911 43.478 0.00 0.00 0.00 4.58
3476 3639 4.088648 GCGTACCAGTCAATTTGAAATCG 58.911 43.478 0.00 2.80 0.00 3.34
3477 3640 5.088739 CAGCGTACCAGTCAATTTGAAATC 58.911 41.667 0.00 0.00 0.00 2.17
3478 3641 4.082787 CCAGCGTACCAGTCAATTTGAAAT 60.083 41.667 0.00 0.00 0.00 2.17
3479 3642 3.252215 CCAGCGTACCAGTCAATTTGAAA 59.748 43.478 0.00 0.00 0.00 2.69
3480 3643 2.811431 CCAGCGTACCAGTCAATTTGAA 59.189 45.455 0.00 0.00 0.00 2.69
3481 3644 2.224426 ACCAGCGTACCAGTCAATTTGA 60.224 45.455 0.00 0.00 0.00 2.69
3482 3645 2.151202 ACCAGCGTACCAGTCAATTTG 58.849 47.619 0.00 0.00 0.00 2.32
3483 3646 2.561478 ACCAGCGTACCAGTCAATTT 57.439 45.000 0.00 0.00 0.00 1.82
3484 3647 2.561478 AACCAGCGTACCAGTCAATT 57.439 45.000 0.00 0.00 0.00 2.32
3485 3648 2.561478 AAACCAGCGTACCAGTCAAT 57.439 45.000 0.00 0.00 0.00 2.57
3486 3649 3.007074 TGATAAACCAGCGTACCAGTCAA 59.993 43.478 0.00 0.00 0.00 3.18
3487 3650 2.563620 TGATAAACCAGCGTACCAGTCA 59.436 45.455 0.00 0.00 0.00 3.41
3488 3651 3.241067 TGATAAACCAGCGTACCAGTC 57.759 47.619 0.00 0.00 0.00 3.51
3489 3652 3.451178 AGATGATAAACCAGCGTACCAGT 59.549 43.478 0.00 0.00 0.00 4.00
3490 3653 4.060038 AGATGATAAACCAGCGTACCAG 57.940 45.455 0.00 0.00 0.00 4.00
3491 3654 4.481368 AAGATGATAAACCAGCGTACCA 57.519 40.909 0.00 0.00 0.00 3.25
3492 3655 5.813080 AAAAGATGATAAACCAGCGTACC 57.187 39.130 0.00 0.00 0.00 3.34
3531 3694 9.546428 CCACTTTACCAAAAAGAAAGATGATTT 57.454 29.630 4.59 0.00 34.83 2.17
3532 3695 8.704668 ACCACTTTACCAAAAAGAAAGATGATT 58.295 29.630 4.59 0.00 34.83 2.57
3533 3696 8.250143 ACCACTTTACCAAAAAGAAAGATGAT 57.750 30.769 4.59 0.00 34.83 2.45
3534 3697 7.654022 ACCACTTTACCAAAAAGAAAGATGA 57.346 32.000 4.59 0.00 34.83 2.92
3535 3698 8.716646 AAACCACTTTACCAAAAAGAAAGATG 57.283 30.769 4.59 0.00 34.83 2.90
3545 3708 9.597170 GGTGTTTAAATAAACCACTTTACCAAA 57.403 29.630 12.22 0.00 43.64 3.28
3546 3709 8.202811 GGGTGTTTAAATAAACCACTTTACCAA 58.797 33.333 16.38 0.00 43.64 3.67
3547 3710 7.343833 TGGGTGTTTAAATAAACCACTTTACCA 59.656 33.333 16.38 12.13 43.64 3.25
3548 3711 7.724287 TGGGTGTTTAAATAAACCACTTTACC 58.276 34.615 15.49 11.16 43.64 2.85
3549 3712 9.597170 TTTGGGTGTTTAAATAAACCACTTTAC 57.403 29.630 9.50 4.25 43.64 2.01
3551 3714 9.516546 TTTTTGGGTGTTTAAATAAACCACTTT 57.483 25.926 9.50 0.00 43.64 2.66
3552 3715 9.688091 ATTTTTGGGTGTTTAAATAAACCACTT 57.312 25.926 9.50 0.00 43.64 3.16
3553 3716 9.114952 CATTTTTGGGTGTTTAAATAAACCACT 57.885 29.630 9.50 0.00 43.64 4.00
3554 3717 8.346300 CCATTTTTGGGTGTTTAAATAAACCAC 58.654 33.333 9.50 4.21 43.64 4.16
3555 3718 7.013369 GCCATTTTTGGGTGTTTAAATAAACCA 59.987 33.333 15.49 11.53 43.64 3.67
3556 3719 7.364200 GCCATTTTTGGGTGTTTAAATAAACC 58.636 34.615 12.22 8.45 43.64 3.27
3557 3720 7.229707 AGGCCATTTTTGGGTGTTTAAATAAAC 59.770 33.333 5.01 8.72 44.32 2.01
3558 3721 7.290813 AGGCCATTTTTGGGTGTTTAAATAAA 58.709 30.769 5.01 0.00 0.00 1.40
3559 3722 6.842676 AGGCCATTTTTGGGTGTTTAAATAA 58.157 32.000 5.01 0.00 0.00 1.40
3560 3723 6.043243 TGAGGCCATTTTTGGGTGTTTAAATA 59.957 34.615 5.01 0.00 0.00 1.40
3561 3724 5.163152 TGAGGCCATTTTTGGGTGTTTAAAT 60.163 36.000 5.01 0.00 0.00 1.40
3562 3725 4.164221 TGAGGCCATTTTTGGGTGTTTAAA 59.836 37.500 5.01 0.00 0.00 1.52
3563 3726 3.711704 TGAGGCCATTTTTGGGTGTTTAA 59.288 39.130 5.01 0.00 0.00 1.52
3564 3727 3.070302 GTGAGGCCATTTTTGGGTGTTTA 59.930 43.478 5.01 0.00 0.00 2.01
3565 3728 2.122768 TGAGGCCATTTTTGGGTGTTT 58.877 42.857 5.01 0.00 0.00 2.83
3566 3729 1.416030 GTGAGGCCATTTTTGGGTGTT 59.584 47.619 5.01 0.00 0.00 3.32
3567 3730 1.047801 GTGAGGCCATTTTTGGGTGT 58.952 50.000 5.01 0.00 0.00 4.16
3568 3731 0.321346 GGTGAGGCCATTTTTGGGTG 59.679 55.000 5.01 0.00 37.17 4.61
3569 3732 0.105246 TGGTGAGGCCATTTTTGGGT 60.105 50.000 5.01 0.00 43.61 4.51
3570 3733 2.757313 TGGTGAGGCCATTTTTGGG 58.243 52.632 5.01 0.00 43.61 4.12
3578 3741 0.833287 GAGATAAGCTGGTGAGGCCA 59.167 55.000 5.01 0.00 46.95 5.36
3579 3742 0.107643 GGAGATAAGCTGGTGAGGCC 59.892 60.000 0.00 0.00 37.90 5.19
3580 3743 0.833287 TGGAGATAAGCTGGTGAGGC 59.167 55.000 0.00 0.00 0.00 4.70
3581 3744 3.634397 TTTGGAGATAAGCTGGTGAGG 57.366 47.619 0.00 0.00 0.00 3.86
3582 3745 4.337555 CCATTTTGGAGATAAGCTGGTGAG 59.662 45.833 0.00 0.00 40.96 3.51
3583 3746 4.018506 TCCATTTTGGAGATAAGCTGGTGA 60.019 41.667 0.00 0.00 42.67 4.02
3584 3747 4.272489 TCCATTTTGGAGATAAGCTGGTG 58.728 43.478 0.00 0.00 42.67 4.17
3585 3748 4.591321 TCCATTTTGGAGATAAGCTGGT 57.409 40.909 0.00 0.00 42.67 4.00
3597 3760 0.817013 CACGGGTCCATCCATTTTGG 59.183 55.000 0.00 0.00 39.43 3.28
3598 3761 0.173255 GCACGGGTCCATCCATTTTG 59.827 55.000 0.00 0.00 38.11 2.44
3599 3762 0.039618 AGCACGGGTCCATCCATTTT 59.960 50.000 0.00 0.00 38.11 1.82
3600 3763 0.680921 CAGCACGGGTCCATCCATTT 60.681 55.000 0.00 0.00 38.11 2.32
3601 3764 1.077501 CAGCACGGGTCCATCCATT 60.078 57.895 0.00 0.00 38.11 3.16
3602 3765 1.995066 TCAGCACGGGTCCATCCAT 60.995 57.895 0.00 0.00 38.11 3.41
3603 3766 2.606213 TCAGCACGGGTCCATCCA 60.606 61.111 0.00 0.00 38.11 3.41
3604 3767 2.125106 GTCAGCACGGGTCCATCC 60.125 66.667 0.00 0.00 0.00 3.51
3605 3768 1.448540 CAGTCAGCACGGGTCCATC 60.449 63.158 0.00 0.00 0.00 3.51
3606 3769 2.665000 CAGTCAGCACGGGTCCAT 59.335 61.111 0.00 0.00 0.00 3.41
3607 3770 4.314440 GCAGTCAGCACGGGTCCA 62.314 66.667 0.00 0.00 44.79 4.02
3616 3779 3.424962 GGATTTTTACGTGAGCAGTCAGC 60.425 47.826 0.00 0.00 46.19 4.26
3617 3780 3.745975 TGGATTTTTACGTGAGCAGTCAG 59.254 43.478 0.00 0.00 31.53 3.51
3618 3781 3.734463 TGGATTTTTACGTGAGCAGTCA 58.266 40.909 0.00 0.00 0.00 3.41
3619 3782 4.946784 ATGGATTTTTACGTGAGCAGTC 57.053 40.909 0.00 0.00 0.00 3.51
3620 3783 5.705609 AAATGGATTTTTACGTGAGCAGT 57.294 34.783 0.00 0.00 0.00 4.40
3621 3784 6.306356 CAGAAAATGGATTTTTACGTGAGCAG 59.694 38.462 0.00 0.00 39.86 4.24
3622 3785 6.016693 TCAGAAAATGGATTTTTACGTGAGCA 60.017 34.615 0.00 0.00 39.86 4.26
3623 3786 6.378582 TCAGAAAATGGATTTTTACGTGAGC 58.621 36.000 0.00 0.00 39.86 4.26
3624 3787 8.970691 AATCAGAAAATGGATTTTTACGTGAG 57.029 30.769 0.00 0.00 39.86 3.51
3625 3788 9.405587 GAAATCAGAAAATGGATTTTTACGTGA 57.594 29.630 0.00 0.00 42.18 4.35
3626 3789 9.190858 TGAAATCAGAAAATGGATTTTTACGTG 57.809 29.630 0.00 0.00 42.18 4.49
3627 3790 9.927668 ATGAAATCAGAAAATGGATTTTTACGT 57.072 25.926 0.00 0.00 42.18 3.57
3631 3794 9.492973 ACGAATGAAATCAGAAAATGGATTTTT 57.507 25.926 0.00 0.00 42.18 1.94
3632 3795 9.492973 AACGAATGAAATCAGAAAATGGATTTT 57.507 25.926 0.00 0.00 42.18 1.82
3633 3796 9.492973 AAACGAATGAAATCAGAAAATGGATTT 57.507 25.926 0.00 0.00 44.14 2.17
3634 3797 9.492973 AAAACGAATGAAATCAGAAAATGGATT 57.507 25.926 0.00 0.00 35.34 3.01
3635 3798 9.143631 GAAAACGAATGAAATCAGAAAATGGAT 57.856 29.630 0.00 0.00 0.00 3.41
3636 3799 8.359642 AGAAAACGAATGAAATCAGAAAATGGA 58.640 29.630 0.00 0.00 0.00 3.41
3637 3800 8.430063 CAGAAAACGAATGAAATCAGAAAATGG 58.570 33.333 0.00 0.00 0.00 3.16
3638 3801 8.430063 CCAGAAAACGAATGAAATCAGAAAATG 58.570 33.333 0.00 0.00 0.00 2.32
3639 3802 8.143835 ACCAGAAAACGAATGAAATCAGAAAAT 58.856 29.630 0.00 0.00 0.00 1.82
3640 3803 7.488322 ACCAGAAAACGAATGAAATCAGAAAA 58.512 30.769 0.00 0.00 0.00 2.29
3641 3804 7.038154 ACCAGAAAACGAATGAAATCAGAAA 57.962 32.000 0.00 0.00 0.00 2.52
3642 3805 6.262049 TGACCAGAAAACGAATGAAATCAGAA 59.738 34.615 0.00 0.00 0.00 3.02
3643 3806 5.762711 TGACCAGAAAACGAATGAAATCAGA 59.237 36.000 0.00 0.00 0.00 3.27
3644 3807 6.000891 TGACCAGAAAACGAATGAAATCAG 57.999 37.500 0.00 0.00 0.00 2.90
3645 3808 6.430925 AGATGACCAGAAAACGAATGAAATCA 59.569 34.615 0.00 0.00 0.00 2.57
3646 3809 6.846350 AGATGACCAGAAAACGAATGAAATC 58.154 36.000 0.00 0.00 0.00 2.17
3647 3810 6.430925 TGAGATGACCAGAAAACGAATGAAAT 59.569 34.615 0.00 0.00 0.00 2.17
3648 3811 5.762711 TGAGATGACCAGAAAACGAATGAAA 59.237 36.000 0.00 0.00 0.00 2.69
3649 3812 5.304778 TGAGATGACCAGAAAACGAATGAA 58.695 37.500 0.00 0.00 0.00 2.57
3650 3813 4.893608 TGAGATGACCAGAAAACGAATGA 58.106 39.130 0.00 0.00 0.00 2.57
3651 3814 5.808042 ATGAGATGACCAGAAAACGAATG 57.192 39.130 0.00 0.00 0.00 2.67
3652 3815 7.921786 TTTATGAGATGACCAGAAAACGAAT 57.078 32.000 0.00 0.00 0.00 3.34
3653 3816 7.094805 CCTTTTATGAGATGACCAGAAAACGAA 60.095 37.037 0.00 0.00 33.11 3.85
3654 3817 6.371548 CCTTTTATGAGATGACCAGAAAACGA 59.628 38.462 0.00 0.00 33.11 3.85
3655 3818 6.149474 ACCTTTTATGAGATGACCAGAAAACG 59.851 38.462 0.00 0.00 33.11 3.60
3656 3819 7.174946 TGACCTTTTATGAGATGACCAGAAAAC 59.825 37.037 0.00 0.00 33.11 2.43
3657 3820 7.230747 TGACCTTTTATGAGATGACCAGAAAA 58.769 34.615 0.00 0.00 34.72 2.29
3658 3821 6.778821 TGACCTTTTATGAGATGACCAGAAA 58.221 36.000 0.00 0.00 0.00 2.52
3659 3822 6.373005 TGACCTTTTATGAGATGACCAGAA 57.627 37.500 0.00 0.00 0.00 3.02
3660 3823 6.156775 TCATGACCTTTTATGAGATGACCAGA 59.843 38.462 0.00 0.00 0.00 3.86
3661 3824 6.351711 TCATGACCTTTTATGAGATGACCAG 58.648 40.000 0.00 0.00 0.00 4.00
3662 3825 6.312141 TCATGACCTTTTATGAGATGACCA 57.688 37.500 0.00 0.00 0.00 4.02
3663 3826 7.630242 TTTCATGACCTTTTATGAGATGACC 57.370 36.000 0.00 0.00 35.01 4.02
3683 3846 9.810545 ACGTTCTCCAATTTCTTTTTAATTTCA 57.189 25.926 0.00 0.00 0.00 2.69
3690 3853 8.846211 TCATTCTACGTTCTCCAATTTCTTTTT 58.154 29.630 0.00 0.00 0.00 1.94
3691 3854 8.391075 TCATTCTACGTTCTCCAATTTCTTTT 57.609 30.769 0.00 0.00 0.00 2.27
3692 3855 7.878127 TCTCATTCTACGTTCTCCAATTTCTTT 59.122 33.333 0.00 0.00 0.00 2.52
3693 3856 7.332182 GTCTCATTCTACGTTCTCCAATTTCTT 59.668 37.037 0.00 0.00 0.00 2.52
3694 3857 6.814146 GTCTCATTCTACGTTCTCCAATTTCT 59.186 38.462 0.00 0.00 0.00 2.52
3695 3858 6.036191 GGTCTCATTCTACGTTCTCCAATTTC 59.964 42.308 0.00 0.00 0.00 2.17
3696 3859 5.875359 GGTCTCATTCTACGTTCTCCAATTT 59.125 40.000 0.00 0.00 0.00 1.82
3697 3860 5.046591 TGGTCTCATTCTACGTTCTCCAATT 60.047 40.000 0.00 0.00 0.00 2.32
3698 3861 4.466370 TGGTCTCATTCTACGTTCTCCAAT 59.534 41.667 0.00 0.00 0.00 3.16
3699 3862 3.830178 TGGTCTCATTCTACGTTCTCCAA 59.170 43.478 0.00 0.00 0.00 3.53
3700 3863 3.427573 TGGTCTCATTCTACGTTCTCCA 58.572 45.455 0.00 0.00 0.00 3.86
3701 3864 4.657436 ATGGTCTCATTCTACGTTCTCC 57.343 45.455 0.00 0.00 0.00 3.71
3702 3865 6.797454 AGTAATGGTCTCATTCTACGTTCTC 58.203 40.000 0.00 0.00 42.16 2.87
3703 3866 6.777213 AGTAATGGTCTCATTCTACGTTCT 57.223 37.500 0.00 0.00 42.16 3.01
3704 3867 7.033791 TGAAGTAATGGTCTCATTCTACGTTC 58.966 38.462 0.00 0.00 42.16 3.95
3705 3868 6.931838 TGAAGTAATGGTCTCATTCTACGTT 58.068 36.000 0.00 0.00 42.16 3.99
3706 3869 6.525578 TGAAGTAATGGTCTCATTCTACGT 57.474 37.500 0.00 0.00 42.16 3.57
3707 3870 7.168302 GTCATGAAGTAATGGTCTCATTCTACG 59.832 40.741 0.00 0.00 42.16 3.51
3708 3871 7.981789 TGTCATGAAGTAATGGTCTCATTCTAC 59.018 37.037 0.00 0.00 42.16 2.59
3709 3872 8.078060 TGTCATGAAGTAATGGTCTCATTCTA 57.922 34.615 0.00 0.00 42.16 2.10
3710 3873 6.950842 TGTCATGAAGTAATGGTCTCATTCT 58.049 36.000 0.00 0.00 42.16 2.40
3711 3874 6.259608 CCTGTCATGAAGTAATGGTCTCATTC 59.740 42.308 0.00 0.00 42.16 2.67
3712 3875 6.070021 TCCTGTCATGAAGTAATGGTCTCATT 60.070 38.462 0.00 0.00 44.87 2.57
3713 3876 5.426509 TCCTGTCATGAAGTAATGGTCTCAT 59.573 40.000 0.00 0.00 34.56 2.90
3714 3877 4.777366 TCCTGTCATGAAGTAATGGTCTCA 59.223 41.667 0.00 0.00 0.00 3.27
3715 3878 5.344743 TCCTGTCATGAAGTAATGGTCTC 57.655 43.478 0.00 0.00 0.00 3.36
3716 3879 5.491982 GTTCCTGTCATGAAGTAATGGTCT 58.508 41.667 0.00 0.00 0.00 3.85
3717 3880 4.636206 GGTTCCTGTCATGAAGTAATGGTC 59.364 45.833 0.00 0.00 0.00 4.02
3718 3881 4.042809 TGGTTCCTGTCATGAAGTAATGGT 59.957 41.667 0.00 0.00 0.00 3.55
3719 3882 4.396166 GTGGTTCCTGTCATGAAGTAATGG 59.604 45.833 0.00 0.00 0.00 3.16
3720 3883 5.003160 TGTGGTTCCTGTCATGAAGTAATG 58.997 41.667 0.00 0.00 0.00 1.90
3721 3884 5.241403 TGTGGTTCCTGTCATGAAGTAAT 57.759 39.130 0.00 0.00 0.00 1.89
3722 3885 4.698201 TGTGGTTCCTGTCATGAAGTAA 57.302 40.909 0.00 0.00 0.00 2.24
3723 3886 4.041567 ACATGTGGTTCCTGTCATGAAGTA 59.958 41.667 19.33 0.00 39.68 2.24
3724 3887 3.181440 ACATGTGGTTCCTGTCATGAAGT 60.181 43.478 19.33 4.83 39.68 3.01
3725 3888 3.189910 CACATGTGGTTCCTGTCATGAAG 59.810 47.826 18.51 0.00 39.68 3.02
3726 3889 3.148412 CACATGTGGTTCCTGTCATGAA 58.852 45.455 18.51 0.00 39.68 2.57
3727 3890 2.106338 ACACATGTGGTTCCTGTCATGA 59.894 45.455 28.64 0.00 39.68 3.07
3728 3891 2.485426 GACACATGTGGTTCCTGTCATG 59.515 50.000 28.64 14.68 42.00 3.07
3729 3892 2.106338 TGACACATGTGGTTCCTGTCAT 59.894 45.455 28.64 4.36 37.03 3.06
3730 3893 1.488393 TGACACATGTGGTTCCTGTCA 59.512 47.619 28.64 17.96 39.08 3.58
3731 3894 2.254546 TGACACATGTGGTTCCTGTC 57.745 50.000 28.64 15.68 34.19 3.51
3732 3895 2.106338 TGATGACACATGTGGTTCCTGT 59.894 45.455 28.64 6.69 34.19 4.00
3733 3896 2.781923 TGATGACACATGTGGTTCCTG 58.218 47.619 28.64 3.16 34.19 3.86
3734 3897 3.507162 TTGATGACACATGTGGTTCCT 57.493 42.857 28.64 11.78 34.19 3.36
3735 3898 4.943705 ACTATTGATGACACATGTGGTTCC 59.056 41.667 28.64 15.35 34.19 3.62
3736 3899 5.877012 AGACTATTGATGACACATGTGGTTC 59.123 40.000 28.64 20.60 34.19 3.62
3737 3900 5.809001 AGACTATTGATGACACATGTGGTT 58.191 37.500 28.64 13.35 34.19 3.67
3738 3901 5.426689 AGACTATTGATGACACATGTGGT 57.573 39.130 28.64 14.83 34.19 4.16
3739 3902 8.143835 TGTATAGACTATTGATGACACATGTGG 58.856 37.037 28.64 11.73 34.19 4.17
3740 3903 9.533253 TTGTATAGACTATTGATGACACATGTG 57.467 33.333 24.25 24.25 0.00 3.21
3743 3906 9.716531 CCATTGTATAGACTATTGATGACACAT 57.283 33.333 0.00 0.00 0.00 3.21
3744 3907 8.923270 TCCATTGTATAGACTATTGATGACACA 58.077 33.333 0.00 0.00 0.00 3.72
3745 3908 9.764363 TTCCATTGTATAGACTATTGATGACAC 57.236 33.333 0.00 0.00 0.00 3.67
3746 3909 9.764363 GTTCCATTGTATAGACTATTGATGACA 57.236 33.333 0.00 0.00 0.00 3.58
3747 3910 9.988815 AGTTCCATTGTATAGACTATTGATGAC 57.011 33.333 0.00 0.00 0.00 3.06
3748 3911 9.987272 CAGTTCCATTGTATAGACTATTGATGA 57.013 33.333 0.00 0.00 0.00 2.92
3749 3912 9.987272 TCAGTTCCATTGTATAGACTATTGATG 57.013 33.333 0.00 3.50 0.00 3.07
3750 3913 9.988815 GTCAGTTCCATTGTATAGACTATTGAT 57.011 33.333 0.00 0.00 0.00 2.57
3751 3914 8.135529 CGTCAGTTCCATTGTATAGACTATTGA 58.864 37.037 0.00 0.00 0.00 2.57
3752 3915 7.382488 CCGTCAGTTCCATTGTATAGACTATTG 59.618 40.741 0.00 0.00 0.00 1.90
3753 3916 7.434492 CCGTCAGTTCCATTGTATAGACTATT 58.566 38.462 0.00 0.00 0.00 1.73
3754 3917 6.015350 CCCGTCAGTTCCATTGTATAGACTAT 60.015 42.308 0.00 0.00 0.00 2.12
3755 3918 5.301045 CCCGTCAGTTCCATTGTATAGACTA 59.699 44.000 0.00 0.00 0.00 2.59
3756 3919 4.099573 CCCGTCAGTTCCATTGTATAGACT 59.900 45.833 0.00 0.00 0.00 3.24
3757 3920 4.369182 CCCGTCAGTTCCATTGTATAGAC 58.631 47.826 0.00 0.00 0.00 2.59
3758 3921 3.386726 CCCCGTCAGTTCCATTGTATAGA 59.613 47.826 0.00 0.00 0.00 1.98
3759 3922 3.728845 CCCCGTCAGTTCCATTGTATAG 58.271 50.000 0.00 0.00 0.00 1.31
3760 3923 2.158871 GCCCCGTCAGTTCCATTGTATA 60.159 50.000 0.00 0.00 0.00 1.47
3761 3924 1.408266 GCCCCGTCAGTTCCATTGTAT 60.408 52.381 0.00 0.00 0.00 2.29
3762 3925 0.035820 GCCCCGTCAGTTCCATTGTA 60.036 55.000 0.00 0.00 0.00 2.41
3763 3926 1.303317 GCCCCGTCAGTTCCATTGT 60.303 57.895 0.00 0.00 0.00 2.71
3764 3927 0.609131 AAGCCCCGTCAGTTCCATTG 60.609 55.000 0.00 0.00 0.00 2.82
3765 3928 0.322546 GAAGCCCCGTCAGTTCCATT 60.323 55.000 0.00 0.00 0.00 3.16
3766 3929 1.299976 GAAGCCCCGTCAGTTCCAT 59.700 57.895 0.00 0.00 0.00 3.41
3767 3930 2.747686 GAAGCCCCGTCAGTTCCA 59.252 61.111 0.00 0.00 0.00 3.53
3768 3931 2.046217 GGAAGCCCCGTCAGTTCC 60.046 66.667 0.00 0.00 32.08 3.62
3769 3932 1.079057 GAGGAAGCCCCGTCAGTTC 60.079 63.158 0.00 0.00 40.87 3.01
3770 3933 2.943978 CGAGGAAGCCCCGTCAGTT 61.944 63.158 0.00 0.00 40.87 3.16
3771 3934 3.382832 CGAGGAAGCCCCGTCAGT 61.383 66.667 0.00 0.00 40.87 3.41
3772 3935 4.148825 CCGAGGAAGCCCCGTCAG 62.149 72.222 0.00 0.00 40.87 3.51
3774 3937 4.452733 CACCGAGGAAGCCCCGTC 62.453 72.222 0.00 0.00 40.87 4.79
3789 3952 2.594592 AGCGAACTGTTGGGGCAC 60.595 61.111 0.00 0.00 0.00 5.01
3790 3953 2.281484 GAGCGAACTGTTGGGGCA 60.281 61.111 0.00 0.00 0.00 5.36
3791 3954 3.423154 CGAGCGAACTGTTGGGGC 61.423 66.667 0.00 0.00 0.00 5.80
3792 3955 3.423154 GCGAGCGAACTGTTGGGG 61.423 66.667 0.00 0.00 0.00 4.96
3793 3956 1.901650 GAAGCGAGCGAACTGTTGGG 61.902 60.000 0.00 0.00 0.00 4.12
3794 3957 0.946221 AGAAGCGAGCGAACTGTTGG 60.946 55.000 0.00 0.00 0.00 3.77
3795 3958 0.436531 GAGAAGCGAGCGAACTGTTG 59.563 55.000 0.00 0.00 0.00 3.33
3796 3959 0.315568 AGAGAAGCGAGCGAACTGTT 59.684 50.000 0.00 0.00 0.00 3.16
3797 3960 1.166129 TAGAGAAGCGAGCGAACTGT 58.834 50.000 0.00 0.00 0.00 3.55
3798 3961 2.223363 TGATAGAGAAGCGAGCGAACTG 60.223 50.000 0.00 0.00 0.00 3.16
3799 3962 2.017782 TGATAGAGAAGCGAGCGAACT 58.982 47.619 0.00 0.00 0.00 3.01
3800 3963 2.476873 TGATAGAGAAGCGAGCGAAC 57.523 50.000 0.00 0.00 0.00 3.95
3801 3964 2.683362 TCTTGATAGAGAAGCGAGCGAA 59.317 45.455 0.00 0.00 0.00 4.70
3802 3965 2.289565 TCTTGATAGAGAAGCGAGCGA 58.710 47.619 0.00 0.00 0.00 4.93
3803 3966 2.765108 TCTTGATAGAGAAGCGAGCG 57.235 50.000 0.00 0.00 0.00 5.03
3813 3976 2.569059 GCATTGCCAGCTCTTGATAGA 58.431 47.619 0.00 0.00 0.00 1.98
3835 3998 2.031682 AGTTCTGACACAAAGCGAATGC 60.032 45.455 0.00 0.00 43.24 3.56
3836 3999 3.364366 GGAGTTCTGACACAAAGCGAATG 60.364 47.826 0.00 0.00 0.00 2.67
3837 4000 2.808543 GGAGTTCTGACACAAAGCGAAT 59.191 45.455 0.00 0.00 0.00 3.34
3838 4001 2.158957 AGGAGTTCTGACACAAAGCGAA 60.159 45.455 0.00 0.00 0.00 4.70
3839 4002 1.412710 AGGAGTTCTGACACAAAGCGA 59.587 47.619 0.00 0.00 0.00 4.93
3840 4003 1.871080 AGGAGTTCTGACACAAAGCG 58.129 50.000 0.00 0.00 0.00 4.68
3841 4004 5.470098 TCATTTAGGAGTTCTGACACAAAGC 59.530 40.000 0.00 0.00 0.00 3.51
3842 4005 7.678947 ATCATTTAGGAGTTCTGACACAAAG 57.321 36.000 0.00 0.00 0.00 2.77
3843 4006 9.739276 ATTATCATTTAGGAGTTCTGACACAAA 57.261 29.630 0.00 0.00 0.00 2.83
3844 4007 9.166173 CATTATCATTTAGGAGTTCTGACACAA 57.834 33.333 0.00 0.00 0.00 3.33
3845 4008 7.770433 CCATTATCATTTAGGAGTTCTGACACA 59.230 37.037 0.00 0.00 0.00 3.72
3846 4009 7.987458 TCCATTATCATTTAGGAGTTCTGACAC 59.013 37.037 0.00 0.00 0.00 3.67
3847 4010 8.089625 TCCATTATCATTTAGGAGTTCTGACA 57.910 34.615 0.00 0.00 0.00 3.58
3848 4011 9.213799 GATCCATTATCATTTAGGAGTTCTGAC 57.786 37.037 0.00 0.00 34.46 3.51
3849 4012 8.937835 TGATCCATTATCATTTAGGAGTTCTGA 58.062 33.333 0.00 0.00 39.77 3.27
3863 4026 8.663167 AACTCATAGTTCCATGATCCATTATCA 58.337 33.333 0.00 0.00 40.66 2.15
3864 4027 8.944029 CAACTCATAGTTCCATGATCCATTATC 58.056 37.037 0.00 0.00 36.03 1.75
3865 4028 7.392673 GCAACTCATAGTTCCATGATCCATTAT 59.607 37.037 0.00 0.00 36.03 1.28
3866 4029 6.712095 GCAACTCATAGTTCCATGATCCATTA 59.288 38.462 0.00 0.00 36.03 1.90
3867 4030 5.533903 GCAACTCATAGTTCCATGATCCATT 59.466 40.000 0.00 0.00 36.03 3.16
3868 4031 5.068636 GCAACTCATAGTTCCATGATCCAT 58.931 41.667 0.00 0.00 36.03 3.41
3869 4032 4.164796 AGCAACTCATAGTTCCATGATCCA 59.835 41.667 0.00 0.00 36.03 3.41
3870 4033 4.712476 AGCAACTCATAGTTCCATGATCC 58.288 43.478 0.00 0.00 36.03 3.36
3871 4034 6.283694 TGTAGCAACTCATAGTTCCATGATC 58.716 40.000 0.00 0.00 36.03 2.92
3872 4035 6.239217 TGTAGCAACTCATAGTTCCATGAT 57.761 37.500 0.00 0.00 36.03 2.45
3873 4036 5.675684 TGTAGCAACTCATAGTTCCATGA 57.324 39.130 0.00 0.00 36.03 3.07
3874 4037 6.372659 ACTTTGTAGCAACTCATAGTTCCATG 59.627 38.462 0.00 0.00 36.03 3.66
3875 4038 6.476378 ACTTTGTAGCAACTCATAGTTCCAT 58.524 36.000 0.00 0.00 36.03 3.41
3876 4039 5.865085 ACTTTGTAGCAACTCATAGTTCCA 58.135 37.500 0.00 0.00 36.03 3.53
3877 4040 6.803154 AACTTTGTAGCAACTCATAGTTCC 57.197 37.500 0.00 0.00 36.03 3.62
3878 4041 8.535690 AGTAACTTTGTAGCAACTCATAGTTC 57.464 34.615 0.00 0.00 36.03 3.01
3879 4042 8.904099 AAGTAACTTTGTAGCAACTCATAGTT 57.096 30.769 0.00 0.00 39.39 2.24
3880 4043 8.535690 GAAGTAACTTTGTAGCAACTCATAGT 57.464 34.615 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.