Multiple sequence alignment - TraesCS5D01G296100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G296100 chr5D 100.000 4534 0 0 1 4534 393807674 393803141 0.000000e+00 8373.0
1 TraesCS5D01G296100 chr5D 98.253 229 2 2 697 925 412323302 412323528 2.540000e-107 399.0
2 TraesCS5D01G296100 chr5D 99.095 221 2 0 697 917 367670049 367670269 9.140000e-107 398.0
3 TraesCS5D01G296100 chr5D 97.835 231 3 2 697 925 446762703 446762473 9.140000e-107 398.0
4 TraesCS5D01G296100 chr5B 93.149 2058 86 25 1018 3028 473643510 473641461 0.000000e+00 2968.0
5 TraesCS5D01G296100 chr5B 93.786 869 38 5 3130 3986 473641463 473640599 0.000000e+00 1291.0
6 TraesCS5D01G296100 chr5B 92.188 640 47 2 1 640 473648627 473647991 0.000000e+00 902.0
7 TraesCS5D01G296100 chr5B 91.532 555 24 12 3986 4534 473640526 473639989 0.000000e+00 743.0
8 TraesCS5D01G296100 chr5B 88.485 165 19 0 3760 3924 28200334 28200498 2.770000e-47 200.0
9 TraesCS5D01G296100 chr5B 97.059 34 1 0 926 959 473643603 473643570 1.760000e-04 58.4
10 TraesCS5D01G296100 chr5A 92.762 1423 67 13 3130 4534 495868076 495866672 0.000000e+00 2025.0
11 TraesCS5D01G296100 chr5A 96.370 1157 37 5 1874 3028 495869227 495868074 0.000000e+00 1899.0
12 TraesCS5D01G296100 chr5A 93.517 617 37 2 926 1542 495869923 495869310 0.000000e+00 915.0
13 TraesCS5D01G296100 chr5A 91.888 641 50 1 1 641 495871052 495870414 0.000000e+00 894.0
14 TraesCS5D01G296100 chr5A 88.235 170 16 3 3761 3926 422030474 422030643 2.770000e-47 200.0
15 TraesCS5D01G296100 chr5A 92.857 56 3 1 642 696 495869990 495869935 3.760000e-11 80.5
16 TraesCS5D01G296100 chr4D 99.111 225 2 0 695 919 497016839 497017063 5.460000e-109 405.0
17 TraesCS5D01G296100 chr6D 98.678 227 3 0 693 919 312766150 312766376 1.960000e-108 403.0
18 TraesCS5D01G296100 chr6D 97.854 233 3 2 687 917 91770570 91770338 7.070000e-108 401.0
19 TraesCS5D01G296100 chr6D 97.321 224 6 0 697 920 453446815 453446592 9.200000e-102 381.0
20 TraesCS5D01G296100 chr6D 96.396 111 2 2 3023 3131 462032645 462032755 1.000000e-41 182.0
21 TraesCS5D01G296100 chr7D 99.095 221 2 0 697 917 575192434 575192214 9.140000e-107 398.0
22 TraesCS5D01G296100 chr7D 91.018 167 12 3 3757 3921 82296540 82296705 5.900000e-54 222.0
23 TraesCS5D01G296100 chr7D 88.024 167 19 1 3761 3926 119897332 119897166 3.580000e-46 196.0
24 TraesCS5D01G296100 chr2D 98.230 226 4 0 695 920 639351672 639351897 3.290000e-106 396.0
25 TraesCS5D01G296100 chr2D 89.286 168 16 2 3761 3928 478820898 478820733 4.600000e-50 209.0
26 TraesCS5D01G296100 chr3D 88.623 167 11 7 3757 3922 339259946 339259787 3.580000e-46 196.0
27 TraesCS5D01G296100 chr1D 87.879 165 20 0 3758 3922 386474024 386474188 1.290000e-45 195.0
28 TraesCS5D01G296100 chr1D 95.690 116 4 1 3018 3132 279934334 279934449 7.750000e-43 185.0
29 TraesCS5D01G296100 chr1D 94.828 116 5 1 3024 3138 314706652 314706767 3.600000e-41 180.0
30 TraesCS5D01G296100 chr4B 95.652 115 5 0 3013 3127 126511455 126511569 7.750000e-43 185.0
31 TraesCS5D01G296100 chrUn 97.248 109 2 1 3025 3132 218382242 218382134 2.790000e-42 183.0
32 TraesCS5D01G296100 chrUn 97.248 109 2 1 3025 3132 218399790 218399682 2.790000e-42 183.0
33 TraesCS5D01G296100 chr3B 95.652 115 4 1 3019 3132 22055104 22054990 2.790000e-42 183.0
34 TraesCS5D01G296100 chr1B 95.652 115 2 3 3026 3138 359907346 359907233 1.000000e-41 182.0
35 TraesCS5D01G296100 chr1B 97.222 108 2 1 3026 3132 624663025 624662918 1.000000e-41 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G296100 chr5D 393803141 393807674 4533 True 8373.0 8373 100.0000 1 4534 1 chr5D.!!$R1 4533
1 TraesCS5D01G296100 chr5B 473639989 473643603 3614 True 1265.1 2968 93.8815 926 4534 4 chr5B.!!$R2 3608
2 TraesCS5D01G296100 chr5B 473647991 473648627 636 True 902.0 902 92.1880 1 640 1 chr5B.!!$R1 639
3 TraesCS5D01G296100 chr5A 495866672 495871052 4380 True 1162.7 2025 93.4788 1 4534 5 chr5A.!!$R1 4533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.040351 ACTAGGAGAGGCTCACTGCA 59.960 55.0 18.26 0.0 45.15 4.41 F
882 1306 0.106719 GTAGGGGGCAGCTTATTGCA 60.107 55.0 0.00 0.0 45.86 4.08 F
1440 1899 0.035056 AGGACGCCCTCTGATTTTGG 60.035 55.0 0.00 0.0 38.86 3.28 F
1730 2213 0.035152 CCCTTGATGCCACAGTAGCA 60.035 55.0 0.00 0.0 45.94 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 1727 0.183731 AGATGGCGATTTCCTTCCCC 59.816 55.0 0.00 0.0 32.42 4.81 R
2158 2647 0.108186 CATCCTCGCTGTAGTGCCAA 60.108 55.0 0.00 0.0 0.00 4.52 R
2948 3454 0.035458 GCTGGAGCACCTAACAGTGT 59.965 55.0 0.71 0.0 40.04 3.55 R
3664 4182 0.798776 GCTGCACCATACTGTGTCAC 59.201 55.0 0.00 0.0 38.52 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 3.444034 GGACGATGGCTATAGCATGACTA 59.556 47.826 25.53 5.44 44.36 2.59
150 151 0.040351 ACTAGGAGAGGCTCACTGCA 59.960 55.000 18.26 0.00 45.15 4.41
194 195 3.044305 GGAGCTCGTTTGTGCGCT 61.044 61.111 9.73 0.00 39.53 5.92
258 259 0.747255 CTCGATTGGGACGACTCCAT 59.253 55.000 0.00 0.00 38.52 3.41
275 276 3.230976 TCCATGCTTCTAGGCTCGAATA 58.769 45.455 1.58 0.00 0.00 1.75
280 281 3.699538 TGCTTCTAGGCTCGAATACTTCA 59.300 43.478 1.58 0.00 0.00 3.02
317 318 3.181495 CGTGAGATGTTGGAGGTCTCTAC 60.181 52.174 0.00 0.00 39.24 2.59
340 341 0.538746 CGGTGGTTTAGCAAGGGGTT 60.539 55.000 0.00 0.00 0.00 4.11
424 425 5.776716 AGGGAAAGAATGAGATGCAAGAAAA 59.223 36.000 0.00 0.00 0.00 2.29
434 435 5.190528 TGAGATGCAAGAAAAGGATAGGTCT 59.809 40.000 0.00 0.00 0.00 3.85
436 437 6.825610 AGATGCAAGAAAAGGATAGGTCTAG 58.174 40.000 0.00 0.00 0.00 2.43
478 479 2.693864 AGGAGGTGGATGCTGGGG 60.694 66.667 0.00 0.00 0.00 4.96
479 480 2.692368 GGAGGTGGATGCTGGGGA 60.692 66.667 0.00 0.00 0.00 4.81
488 489 1.692042 ATGCTGGGGAGCTGCTAGT 60.692 57.895 0.15 0.00 35.49 2.57
517 518 1.725665 CCATCGCGTCGTTCTCCTA 59.274 57.895 5.77 0.00 0.00 2.94
655 1079 4.173256 CACCCGCTTAAATTGGTCATTTC 58.827 43.478 0.00 0.00 36.43 2.17
656 1080 3.194755 ACCCGCTTAAATTGGTCATTTCC 59.805 43.478 0.00 0.00 36.43 3.13
710 1134 5.950544 AAAAAGTTAGGGCCAGTTCTTTT 57.049 34.783 6.18 13.52 36.92 2.27
711 1135 4.937201 AAAGTTAGGGCCAGTTCTTTTG 57.063 40.909 6.18 0.00 0.00 2.44
712 1136 2.239400 AGTTAGGGCCAGTTCTTTTGC 58.761 47.619 6.18 0.00 0.00 3.68
713 1137 2.158460 AGTTAGGGCCAGTTCTTTTGCT 60.158 45.455 6.18 0.00 0.00 3.91
714 1138 3.073946 AGTTAGGGCCAGTTCTTTTGCTA 59.926 43.478 6.18 0.00 0.00 3.49
715 1139 2.206576 AGGGCCAGTTCTTTTGCTAG 57.793 50.000 6.18 0.00 0.00 3.42
716 1140 0.528017 GGGCCAGTTCTTTTGCTAGC 59.472 55.000 8.10 8.10 0.00 3.42
717 1141 1.539157 GGCCAGTTCTTTTGCTAGCT 58.461 50.000 17.23 0.00 0.00 3.32
718 1142 1.889170 GGCCAGTTCTTTTGCTAGCTT 59.111 47.619 17.23 0.00 0.00 3.74
719 1143 2.297315 GGCCAGTTCTTTTGCTAGCTTT 59.703 45.455 17.23 0.00 0.00 3.51
720 1144 3.243873 GGCCAGTTCTTTTGCTAGCTTTT 60.244 43.478 17.23 0.00 0.00 2.27
721 1145 4.371786 GCCAGTTCTTTTGCTAGCTTTTT 58.628 39.130 17.23 0.00 0.00 1.94
741 1165 6.515272 TTTTTGGGCTTCTAGAATAAGCTG 57.485 37.500 13.28 0.00 46.81 4.24
742 1166 3.199880 TGGGCTTCTAGAATAAGCTGC 57.800 47.619 13.28 8.77 46.81 5.25
743 1167 2.158755 TGGGCTTCTAGAATAAGCTGCC 60.159 50.000 18.36 18.36 46.81 4.85
744 1168 2.499197 GGCTTCTAGAATAAGCTGCCC 58.501 52.381 16.58 3.50 46.81 5.36
745 1169 2.499197 GCTTCTAGAATAAGCTGCCCC 58.501 52.381 5.44 0.00 44.75 5.80
746 1170 2.812243 GCTTCTAGAATAAGCTGCCCCC 60.812 54.545 5.44 0.00 44.75 5.40
747 1171 2.496679 TCTAGAATAAGCTGCCCCCT 57.503 50.000 0.00 0.00 0.00 4.79
748 1172 3.630625 TCTAGAATAAGCTGCCCCCTA 57.369 47.619 0.00 0.00 0.00 3.53
749 1173 3.240302 TCTAGAATAAGCTGCCCCCTAC 58.760 50.000 0.00 0.00 0.00 3.18
750 1174 1.141185 AGAATAAGCTGCCCCCTACC 58.859 55.000 0.00 0.00 0.00 3.18
751 1175 0.110678 GAATAAGCTGCCCCCTACCC 59.889 60.000 0.00 0.00 0.00 3.69
752 1176 0.626277 AATAAGCTGCCCCCTACCCA 60.626 55.000 0.00 0.00 0.00 4.51
753 1177 1.062488 ATAAGCTGCCCCCTACCCAG 61.062 60.000 0.00 0.00 0.00 4.45
756 1180 3.017581 CTGCCCCCTACCCAGCTT 61.018 66.667 0.00 0.00 0.00 3.74
757 1181 1.692749 CTGCCCCCTACCCAGCTTA 60.693 63.158 0.00 0.00 0.00 3.09
758 1182 1.005556 TGCCCCCTACCCAGCTTAT 59.994 57.895 0.00 0.00 0.00 1.73
759 1183 0.626277 TGCCCCCTACCCAGCTTATT 60.626 55.000 0.00 0.00 0.00 1.40
760 1184 0.110678 GCCCCCTACCCAGCTTATTC 59.889 60.000 0.00 0.00 0.00 1.75
761 1185 1.821088 CCCCCTACCCAGCTTATTCT 58.179 55.000 0.00 0.00 0.00 2.40
762 1186 2.986050 CCCCCTACCCAGCTTATTCTA 58.014 52.381 0.00 0.00 0.00 2.10
763 1187 2.907042 CCCCCTACCCAGCTTATTCTAG 59.093 54.545 0.00 0.00 0.00 2.43
764 1188 3.439558 CCCCCTACCCAGCTTATTCTAGA 60.440 52.174 0.00 0.00 0.00 2.43
765 1189 4.232091 CCCCTACCCAGCTTATTCTAGAA 58.768 47.826 7.82 7.82 0.00 2.10
766 1190 4.284746 CCCCTACCCAGCTTATTCTAGAAG 59.715 50.000 11.53 0.00 0.00 2.85
775 1199 5.897377 GCTTATTCTAGAAGCCCAAACAA 57.103 39.130 11.53 0.00 42.90 2.83
776 1200 6.267496 GCTTATTCTAGAAGCCCAAACAAA 57.733 37.500 11.53 0.00 42.90 2.83
777 1201 6.687604 GCTTATTCTAGAAGCCCAAACAAAA 58.312 36.000 11.53 0.00 42.90 2.44
778 1202 7.323420 GCTTATTCTAGAAGCCCAAACAAAAT 58.677 34.615 11.53 0.00 42.90 1.82
779 1203 7.819415 GCTTATTCTAGAAGCCCAAACAAAATT 59.181 33.333 11.53 0.00 42.90 1.82
780 1204 9.710900 CTTATTCTAGAAGCCCAAACAAAATTT 57.289 29.630 11.53 0.00 0.00 1.82
782 1206 8.607441 ATTCTAGAAGCCCAAACAAAATTTTC 57.393 30.769 11.53 0.00 0.00 2.29
783 1207 7.360113 TCTAGAAGCCCAAACAAAATTTTCT 57.640 32.000 0.00 0.00 0.00 2.52
784 1208 7.791029 TCTAGAAGCCCAAACAAAATTTTCTT 58.209 30.769 0.00 0.00 0.00 2.52
785 1209 8.264347 TCTAGAAGCCCAAACAAAATTTTCTTT 58.736 29.630 0.00 0.00 0.00 2.52
786 1210 7.701539 AGAAGCCCAAACAAAATTTTCTTTT 57.298 28.000 0.00 1.12 0.00 2.27
787 1211 8.121305 AGAAGCCCAAACAAAATTTTCTTTTT 57.879 26.923 0.00 0.00 0.00 1.94
788 1212 9.237187 AGAAGCCCAAACAAAATTTTCTTTTTA 57.763 25.926 0.00 0.00 0.00 1.52
816 1240 8.826293 AGCCTATTAGTCAAGTCTTAACTACT 57.174 34.615 0.00 0.00 33.48 2.57
817 1241 9.917887 AGCCTATTAGTCAAGTCTTAACTACTA 57.082 33.333 0.00 0.00 33.48 1.82
821 1245 8.826293 ATTAGTCAAGTCTTAACTACTAGGCT 57.174 34.615 0.00 0.00 33.48 4.58
822 1246 8.647256 TTAGTCAAGTCTTAACTACTAGGCTT 57.353 34.615 0.00 0.00 36.80 4.35
823 1247 7.160547 AGTCAAGTCTTAACTACTAGGCTTC 57.839 40.000 0.00 0.00 34.27 3.86
824 1248 6.949463 AGTCAAGTCTTAACTACTAGGCTTCT 59.051 38.462 0.00 0.00 34.27 2.85
825 1249 8.108364 AGTCAAGTCTTAACTACTAGGCTTCTA 58.892 37.037 0.00 0.00 34.27 2.10
826 1250 8.738106 GTCAAGTCTTAACTACTAGGCTTCTAA 58.262 37.037 0.00 0.00 34.27 2.10
827 1251 9.305555 TCAAGTCTTAACTACTAGGCTTCTAAA 57.694 33.333 0.00 0.00 34.27 1.85
828 1252 9.924650 CAAGTCTTAACTACTAGGCTTCTAAAA 57.075 33.333 0.00 0.00 34.27 1.52
830 1254 9.926158 AGTCTTAACTACTAGGCTTCTAAAAAC 57.074 33.333 0.00 0.00 32.59 2.43
831 1255 9.702494 GTCTTAACTACTAGGCTTCTAAAAACA 57.298 33.333 0.00 0.00 0.00 2.83
843 1267 9.271828 AGGCTTCTAAAAACATAAATTTGGTTG 57.728 29.630 0.00 0.00 0.00 3.77
844 1268 8.503196 GGCTTCTAAAAACATAAATTTGGTTGG 58.497 33.333 0.00 0.00 0.00 3.77
845 1269 8.503196 GCTTCTAAAAACATAAATTTGGTTGGG 58.497 33.333 0.00 0.00 0.00 4.12
846 1270 7.971183 TCTAAAAACATAAATTTGGTTGGGC 57.029 32.000 0.00 0.00 0.00 5.36
847 1271 7.740805 TCTAAAAACATAAATTTGGTTGGGCT 58.259 30.769 0.00 0.00 0.00 5.19
848 1272 8.214364 TCTAAAAACATAAATTTGGTTGGGCTT 58.786 29.630 0.00 1.84 0.00 4.35
849 1273 6.875948 AAAACATAAATTTGGTTGGGCTTC 57.124 33.333 0.00 0.00 0.00 3.86
850 1274 5.823861 AACATAAATTTGGTTGGGCTTCT 57.176 34.783 0.00 0.00 0.00 2.85
851 1275 6.926630 AACATAAATTTGGTTGGGCTTCTA 57.073 33.333 0.00 0.00 0.00 2.10
852 1276 6.530019 ACATAAATTTGGTTGGGCTTCTAG 57.470 37.500 0.00 0.00 0.00 2.43
853 1277 6.252995 ACATAAATTTGGTTGGGCTTCTAGA 58.747 36.000 0.00 0.00 0.00 2.43
854 1278 6.723977 ACATAAATTTGGTTGGGCTTCTAGAA 59.276 34.615 4.81 4.81 0.00 2.10
855 1279 7.400052 ACATAAATTTGGTTGGGCTTCTAGAAT 59.600 33.333 5.44 0.00 0.00 2.40
856 1280 8.912988 CATAAATTTGGTTGGGCTTCTAGAATA 58.087 33.333 5.44 0.00 0.00 1.75
857 1281 7.790782 AAATTTGGTTGGGCTTCTAGAATAA 57.209 32.000 5.44 0.00 0.00 1.40
858 1282 7.410120 AATTTGGTTGGGCTTCTAGAATAAG 57.590 36.000 5.44 0.00 0.00 1.73
859 1283 3.886123 TGGTTGGGCTTCTAGAATAAGC 58.114 45.455 5.44 5.98 46.90 3.09
860 1284 3.523564 TGGTTGGGCTTCTAGAATAAGCT 59.476 43.478 13.28 0.00 46.81 3.74
861 1285 4.719773 TGGTTGGGCTTCTAGAATAAGCTA 59.280 41.667 13.28 2.66 46.81 3.32
862 1286 5.163301 TGGTTGGGCTTCTAGAATAAGCTAG 60.163 44.000 13.28 0.00 46.81 3.42
863 1287 5.301555 GTTGGGCTTCTAGAATAAGCTAGG 58.698 45.833 13.28 0.00 46.81 3.02
864 1288 4.557705 TGGGCTTCTAGAATAAGCTAGGT 58.442 43.478 13.28 0.00 46.81 3.08
865 1289 5.712752 TGGGCTTCTAGAATAAGCTAGGTA 58.287 41.667 13.28 0.00 46.81 3.08
866 1290 5.775701 TGGGCTTCTAGAATAAGCTAGGTAG 59.224 44.000 13.28 0.00 46.81 3.18
867 1291 5.186215 GGGCTTCTAGAATAAGCTAGGTAGG 59.814 48.000 13.28 0.00 46.81 3.18
868 1292 5.186215 GGCTTCTAGAATAAGCTAGGTAGGG 59.814 48.000 13.28 0.00 46.81 3.53
869 1293 5.186215 GCTTCTAGAATAAGCTAGGTAGGGG 59.814 48.000 5.44 0.00 44.75 4.79
870 1294 5.272405 TCTAGAATAAGCTAGGTAGGGGG 57.728 47.826 0.00 0.00 38.68 5.40
871 1295 2.622210 AGAATAAGCTAGGTAGGGGGC 58.378 52.381 0.00 0.00 0.00 5.80
872 1296 2.090153 AGAATAAGCTAGGTAGGGGGCA 60.090 50.000 0.00 0.00 0.00 5.36
873 1297 2.031495 ATAAGCTAGGTAGGGGGCAG 57.969 55.000 0.00 0.00 0.00 4.85
874 1298 0.763223 TAAGCTAGGTAGGGGGCAGC 60.763 60.000 0.00 0.00 0.00 5.25
875 1299 2.446802 GCTAGGTAGGGGGCAGCT 60.447 66.667 0.00 0.00 0.00 4.24
876 1300 2.073101 GCTAGGTAGGGGGCAGCTT 61.073 63.158 0.00 0.00 0.00 3.74
877 1301 0.763223 GCTAGGTAGGGGGCAGCTTA 60.763 60.000 0.00 0.00 0.00 3.09
878 1302 2.031495 CTAGGTAGGGGGCAGCTTAT 57.969 55.000 0.00 0.00 0.00 1.73
879 1303 2.339769 CTAGGTAGGGGGCAGCTTATT 58.660 52.381 0.00 0.00 0.00 1.40
880 1304 0.846693 AGGTAGGGGGCAGCTTATTG 59.153 55.000 0.00 0.00 0.00 1.90
881 1305 0.823769 GGTAGGGGGCAGCTTATTGC 60.824 60.000 0.00 0.00 43.34 3.56
882 1306 0.106719 GTAGGGGGCAGCTTATTGCA 60.107 55.000 0.00 0.00 45.86 4.08
883 1307 0.183492 TAGGGGGCAGCTTATTGCAG 59.817 55.000 0.00 0.00 45.86 4.41
905 1329 5.897377 GCTTATTCTAGAAGCCACCAAAA 57.103 39.130 11.53 0.00 42.90 2.44
906 1330 5.884771 GCTTATTCTAGAAGCCACCAAAAG 58.115 41.667 11.53 5.59 42.90 2.27
907 1331 5.648092 GCTTATTCTAGAAGCCACCAAAAGA 59.352 40.000 11.53 0.00 42.90 2.52
908 1332 6.151144 GCTTATTCTAGAAGCCACCAAAAGAA 59.849 38.462 11.53 0.00 42.90 2.52
909 1333 5.966742 ATTCTAGAAGCCACCAAAAGAAC 57.033 39.130 11.53 0.00 0.00 3.01
910 1334 4.706842 TCTAGAAGCCACCAAAAGAACT 57.293 40.909 0.00 0.00 0.00 3.01
911 1335 4.389374 TCTAGAAGCCACCAAAAGAACTG 58.611 43.478 0.00 0.00 0.00 3.16
912 1336 2.310538 AGAAGCCACCAAAAGAACTGG 58.689 47.619 0.00 0.00 40.05 4.00
914 1338 1.367471 GCCACCAAAAGAACTGGCC 59.633 57.895 0.00 0.00 43.01 5.36
915 1339 2.049435 CCACCAAAAGAACTGGCCC 58.951 57.895 0.00 0.00 37.48 5.80
916 1340 0.469892 CCACCAAAAGAACTGGCCCT 60.470 55.000 0.00 0.00 37.48 5.19
917 1341 1.413118 CACCAAAAGAACTGGCCCTT 58.587 50.000 0.00 0.00 37.48 3.95
918 1342 2.593026 CACCAAAAGAACTGGCCCTTA 58.407 47.619 0.00 0.00 37.48 2.69
919 1343 2.962421 CACCAAAAGAACTGGCCCTTAA 59.038 45.455 0.00 0.00 37.48 1.85
920 1344 3.578282 CACCAAAAGAACTGGCCCTTAAT 59.422 43.478 0.00 0.00 37.48 1.40
921 1345 3.832490 ACCAAAAGAACTGGCCCTTAATC 59.168 43.478 0.00 0.00 37.48 1.75
922 1346 4.089361 CCAAAAGAACTGGCCCTTAATCT 58.911 43.478 0.00 0.00 0.00 2.40
923 1347 4.158579 CCAAAAGAACTGGCCCTTAATCTC 59.841 45.833 0.00 0.00 0.00 2.75
924 1348 4.936685 AAAGAACTGGCCCTTAATCTCT 57.063 40.909 0.00 0.00 0.00 3.10
968 1392 1.128809 TTACTGGAAAGTGGGCCCGA 61.129 55.000 19.37 3.06 0.00 5.14
971 1395 4.426313 GGAAAGTGGGCCCGAGGG 62.426 72.222 19.37 3.22 38.57 4.30
976 1400 4.717313 GTGGGCCCGAGGGTTCAC 62.717 72.222 19.37 13.68 37.65 3.18
990 1414 0.895559 GTTCACCCAAAGGCCCAGAG 60.896 60.000 0.00 0.00 36.11 3.35
991 1415 2.036256 CACCCAAAGGCCCAGAGG 59.964 66.667 0.00 0.00 36.11 3.69
1001 1425 2.459086 GCCCAGAGGATGCCCAGAT 61.459 63.158 0.00 0.00 33.47 2.90
1027 1486 4.211794 ACAAGTCACGTAATAAACCCAACG 59.788 41.667 0.00 0.00 40.99 4.10
1142 1601 0.460987 CCAAGGTCAGCTCGATCCAC 60.461 60.000 0.00 0.00 0.00 4.02
1154 1613 0.179045 CGATCCACCCAATCTCCCAC 60.179 60.000 0.00 0.00 0.00 4.61
1177 1636 2.276430 GCGTTTCGATTTCGCCCG 60.276 61.111 15.09 0.00 43.41 6.13
1272 1731 5.105716 TCGCAATTCGATTTATTTTTGGGGA 60.106 36.000 0.00 0.00 43.16 4.81
1308 1767 2.411701 CCGCGGCTAGATTCGTGA 59.588 61.111 14.67 0.00 38.95 4.35
1309 1768 1.226859 CCGCGGCTAGATTCGTGAA 60.227 57.895 14.67 0.00 38.95 3.18
1440 1899 0.035056 AGGACGCCCTCTGATTTTGG 60.035 55.000 0.00 0.00 38.86 3.28
1498 1957 4.269523 TCCTTGCGCTTGTGCCCT 62.270 61.111 9.73 0.00 35.36 5.19
1501 1960 2.359850 TTGCGCTTGTGCCCTAGG 60.360 61.111 9.73 0.06 35.36 3.02
1519 1978 1.082194 AGGTTTGGAGATGGGGAGGTA 59.918 52.381 0.00 0.00 0.00 3.08
1545 2004 3.378861 ACTCTTACCCTAGGTTACGCT 57.621 47.619 8.29 0.00 37.09 5.07
1561 2020 6.321690 AGGTTACGCTTATCTGTCTGTATCTT 59.678 38.462 0.00 0.00 0.00 2.40
1562 2021 6.418226 GGTTACGCTTATCTGTCTGTATCTTG 59.582 42.308 0.00 0.00 0.00 3.02
1563 2022 4.938080 ACGCTTATCTGTCTGTATCTTGG 58.062 43.478 0.00 0.00 0.00 3.61
1564 2023 4.402793 ACGCTTATCTGTCTGTATCTTGGT 59.597 41.667 0.00 0.00 0.00 3.67
1565 2024 5.105310 ACGCTTATCTGTCTGTATCTTGGTT 60.105 40.000 0.00 0.00 0.00 3.67
1566 2025 5.460419 CGCTTATCTGTCTGTATCTTGGTTC 59.540 44.000 0.00 0.00 0.00 3.62
1568 2027 6.478344 GCTTATCTGTCTGTATCTTGGTTCAG 59.522 42.308 0.00 0.00 0.00 3.02
1570 2029 5.392767 TCTGTCTGTATCTTGGTTCAGTC 57.607 43.478 0.00 0.00 0.00 3.51
1571 2030 4.082733 TCTGTCTGTATCTTGGTTCAGTCG 60.083 45.833 0.00 0.00 0.00 4.18
1572 2031 3.056821 TGTCTGTATCTTGGTTCAGTCGG 60.057 47.826 0.00 0.00 0.00 4.79
1573 2032 3.056749 GTCTGTATCTTGGTTCAGTCGGT 60.057 47.826 0.00 0.00 0.00 4.69
1574 2033 4.157289 GTCTGTATCTTGGTTCAGTCGGTA 59.843 45.833 0.00 0.00 0.00 4.02
1587 2065 3.500680 TCAGTCGGTAATTTTTCCAGTGC 59.499 43.478 0.00 0.00 0.00 4.40
1600 2081 2.156098 TCCAGTGCGGAAATTTGTACC 58.844 47.619 0.00 0.00 42.52 3.34
1662 2143 7.609760 TCTGATGCGTTAATTCACTTGTTAT 57.390 32.000 0.00 0.00 0.00 1.89
1663 2144 7.684670 TCTGATGCGTTAATTCACTTGTTATC 58.315 34.615 0.00 0.00 0.00 1.75
1677 2159 4.218635 ACTTGTTATCTTCAGAGTCTGCGA 59.781 41.667 15.72 13.80 0.00 5.10
1703 2185 7.416154 TTTTTCACTGTAAACTCTCATACCG 57.584 36.000 0.00 0.00 0.00 4.02
1706 2188 4.398358 TCACTGTAAACTCTCATACCGAGG 59.602 45.833 0.00 0.00 42.55 4.63
1707 2189 3.130693 ACTGTAAACTCTCATACCGAGGC 59.869 47.826 0.00 0.00 42.55 4.70
1708 2190 2.429610 TGTAAACTCTCATACCGAGGCC 59.570 50.000 0.00 0.00 42.55 5.19
1716 2199 2.375345 ATACCGAGGCCACCCCTTG 61.375 63.158 5.01 0.00 46.60 3.61
1720 2203 2.440980 GAGGCCACCCCTTGATGC 60.441 66.667 5.01 0.00 46.60 3.91
1725 2208 1.679977 CCACCCCTTGATGCCACAG 60.680 63.158 0.00 0.00 0.00 3.66
1730 2213 0.035152 CCCTTGATGCCACAGTAGCA 60.035 55.000 0.00 0.00 45.94 3.49
1731 2214 1.089920 CCTTGATGCCACAGTAGCAC 58.910 55.000 0.00 0.00 44.40 4.40
1732 2215 1.339438 CCTTGATGCCACAGTAGCACT 60.339 52.381 0.00 0.00 44.40 4.40
1733 2216 2.093500 CCTTGATGCCACAGTAGCACTA 60.093 50.000 0.00 0.00 44.40 2.74
1739 2228 2.492088 TGCCACAGTAGCACTAGTGTAG 59.508 50.000 23.44 11.16 45.16 2.74
1745 2234 5.744345 CACAGTAGCACTAGTGTAGTATTGC 59.256 44.000 23.44 7.14 45.16 3.56
1760 2249 7.872993 GTGTAGTATTGCCATGTAGTCATGTAT 59.127 37.037 7.30 1.98 46.99 2.29
1763 2252 6.936900 AGTATTGCCATGTAGTCATGTATTCC 59.063 38.462 7.30 0.00 46.99 3.01
1791 2280 1.548719 TCGAAGTCATGGATCCGTGTT 59.451 47.619 29.10 19.20 34.75 3.32
1838 2327 0.250338 GTCTTCAGTTCGGTGCCCTT 60.250 55.000 0.00 0.00 0.00 3.95
1842 2331 1.966451 CAGTTCGGTGCCCTTGGTC 60.966 63.158 0.00 0.00 0.00 4.02
1889 2378 4.037208 GCTAATCCAACTGTCATGAATGGG 59.963 45.833 14.58 4.64 0.00 4.00
1890 2379 2.512692 TCCAACTGTCATGAATGGGG 57.487 50.000 14.58 9.28 0.00 4.96
1912 2401 2.899900 TCATGTAGTTGGACTGCAGTCT 59.100 45.455 38.17 24.87 43.77 3.24
1923 2412 4.156556 TGGACTGCAGTCTTTTGATAATGC 59.843 41.667 38.17 21.38 44.20 3.56
2029 2518 5.201243 GGTTATTTCTTGGTCCTATGCCTT 58.799 41.667 0.00 0.00 0.00 4.35
2050 2539 2.998279 GCCTTTCTTGCGCCATGCT 61.998 57.895 4.18 0.00 46.63 3.79
2158 2647 1.277557 GTGATCAAGGCAGACACTCCT 59.722 52.381 0.00 0.00 0.00 3.69
2167 2656 1.941668 GCAGACACTCCTTGGCACTAC 60.942 57.143 0.00 0.00 34.40 2.73
2202 2691 3.021695 TCGATCTCGTGGTATGGTCTTT 58.978 45.455 0.00 0.00 40.80 2.52
2210 2699 3.435671 CGTGGTATGGTCTTTTTCTCCAC 59.564 47.826 0.00 0.00 40.13 4.02
2240 2729 7.555914 TGCATTACTCCATTAACTTTAGCATGA 59.444 33.333 0.00 0.00 0.00 3.07
2241 2730 7.857885 GCATTACTCCATTAACTTTAGCATGAC 59.142 37.037 0.00 0.00 0.00 3.06
2282 2771 1.604278 GCAGGGAACGATAATTGGCTC 59.396 52.381 0.00 0.00 0.00 4.70
2613 3110 3.423749 TCTCATGCACATCAAATGGTGT 58.576 40.909 0.00 0.00 37.35 4.16
2801 3299 6.951198 AGTTTCTCCTCTCACATTCTCTCTTA 59.049 38.462 0.00 0.00 0.00 2.10
2997 3503 4.422073 TGTTCATCTTGTCTGAAGGTGT 57.578 40.909 0.00 0.00 33.49 4.16
3017 3523 2.551459 GTCAGCACAATCAACTTCAGCT 59.449 45.455 0.00 0.00 0.00 4.24
3028 3535 8.314751 ACAATCAACTTCAGCTACAGTTATACT 58.685 33.333 8.94 0.00 31.78 2.12
3029 3536 8.812329 CAATCAACTTCAGCTACAGTTATACTC 58.188 37.037 8.94 0.00 31.78 2.59
3030 3537 6.864342 TCAACTTCAGCTACAGTTATACTCC 58.136 40.000 8.94 0.00 31.78 3.85
3031 3538 5.855740 ACTTCAGCTACAGTTATACTCCC 57.144 43.478 0.00 0.00 0.00 4.30
3032 3539 5.520751 ACTTCAGCTACAGTTATACTCCCT 58.479 41.667 0.00 0.00 0.00 4.20
3033 3540 5.595133 ACTTCAGCTACAGTTATACTCCCTC 59.405 44.000 0.00 0.00 0.00 4.30
3034 3541 4.471548 TCAGCTACAGTTATACTCCCTCC 58.528 47.826 0.00 0.00 0.00 4.30
3035 3542 3.253677 CAGCTACAGTTATACTCCCTCCG 59.746 52.174 0.00 0.00 0.00 4.63
3036 3543 3.117587 AGCTACAGTTATACTCCCTCCGT 60.118 47.826 0.00 0.00 0.00 4.69
3037 3544 3.635836 GCTACAGTTATACTCCCTCCGTT 59.364 47.826 0.00 0.00 0.00 4.44
3038 3545 4.261530 GCTACAGTTATACTCCCTCCGTTC 60.262 50.000 0.00 0.00 0.00 3.95
3039 3546 3.029570 ACAGTTATACTCCCTCCGTTCC 58.970 50.000 0.00 0.00 0.00 3.62
3040 3547 3.028850 CAGTTATACTCCCTCCGTTCCA 58.971 50.000 0.00 0.00 0.00 3.53
3041 3548 3.449737 CAGTTATACTCCCTCCGTTCCAA 59.550 47.826 0.00 0.00 0.00 3.53
3042 3549 4.081309 CAGTTATACTCCCTCCGTTCCAAA 60.081 45.833 0.00 0.00 0.00 3.28
3043 3550 4.720273 AGTTATACTCCCTCCGTTCCAAAT 59.280 41.667 0.00 0.00 0.00 2.32
3044 3551 5.191124 AGTTATACTCCCTCCGTTCCAAATT 59.809 40.000 0.00 0.00 0.00 1.82
3045 3552 6.384886 AGTTATACTCCCTCCGTTCCAAATTA 59.615 38.462 0.00 0.00 0.00 1.40
3046 3553 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3047 3554 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3048 3555 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
3049 3556 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
3050 3557 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
3051 3558 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
3052 3559 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
3053 3560 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
3054 3561 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
3055 3562 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
3056 3563 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
3057 3564 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
3058 3565 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
3059 3566 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
3060 3567 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
3061 3568 4.092821 CCAAATTACTCGTCGCTGAAATGA 59.907 41.667 0.00 0.00 0.00 2.57
3062 3569 5.390461 CCAAATTACTCGTCGCTGAAATGAA 60.390 40.000 0.00 0.00 0.00 2.57
3063 3570 6.250819 CAAATTACTCGTCGCTGAAATGAAT 58.749 36.000 0.00 0.00 0.00 2.57
3064 3571 4.840401 TTACTCGTCGCTGAAATGAATG 57.160 40.909 0.00 0.00 0.00 2.67
3065 3572 2.688507 ACTCGTCGCTGAAATGAATGT 58.311 42.857 0.00 0.00 0.00 2.71
3066 3573 3.845178 ACTCGTCGCTGAAATGAATGTA 58.155 40.909 0.00 0.00 0.00 2.29
3067 3574 4.433615 ACTCGTCGCTGAAATGAATGTAT 58.566 39.130 0.00 0.00 0.00 2.29
3068 3575 4.504461 ACTCGTCGCTGAAATGAATGTATC 59.496 41.667 0.00 0.00 0.00 2.24
3069 3576 4.682787 TCGTCGCTGAAATGAATGTATCT 58.317 39.130 0.00 0.00 0.00 1.98
3070 3577 5.827666 TCGTCGCTGAAATGAATGTATCTA 58.172 37.500 0.00 0.00 0.00 1.98
3071 3578 5.915196 TCGTCGCTGAAATGAATGTATCTAG 59.085 40.000 0.00 0.00 0.00 2.43
3072 3579 5.915196 CGTCGCTGAAATGAATGTATCTAGA 59.085 40.000 0.00 0.00 0.00 2.43
3073 3580 6.417930 CGTCGCTGAAATGAATGTATCTAGAA 59.582 38.462 0.00 0.00 0.00 2.10
3074 3581 7.559845 GTCGCTGAAATGAATGTATCTAGAAC 58.440 38.462 0.00 0.00 0.00 3.01
3075 3582 7.436673 GTCGCTGAAATGAATGTATCTAGAACT 59.563 37.037 0.00 0.00 0.00 3.01
3076 3583 8.630037 TCGCTGAAATGAATGTATCTAGAACTA 58.370 33.333 0.00 0.00 0.00 2.24
3077 3584 9.249457 CGCTGAAATGAATGTATCTAGAACTAA 57.751 33.333 0.00 0.00 0.00 2.24
3104 3611 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
3105 3612 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
3106 3613 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
3107 3614 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
3108 3615 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
3109 3616 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
3110 3617 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
3111 3618 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
3112 3619 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
3113 3620 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
3114 3621 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
3115 3622 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
3116 3623 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
3117 3624 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
3118 3625 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
3119 3626 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
3120 3627 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
3121 3628 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
3177 3684 0.826256 GTTTTGAGTTTCGGGGGCCT 60.826 55.000 0.84 0.00 0.00 5.19
3244 3760 7.928167 TGTATCGACATCATTTTTCTAGCAGAT 59.072 33.333 0.00 0.00 0.00 2.90
3251 3767 7.833183 ACATCATTTTTCTAGCAGATTCCTTCT 59.167 33.333 0.00 0.00 33.90 2.85
3266 3782 6.626623 AGATTCCTTCTATTGCACATTTGCAC 60.627 38.462 5.92 0.00 45.67 4.57
3307 3823 5.634020 GTCTAACTAATTTCTGCTGTCACGT 59.366 40.000 0.00 0.00 0.00 4.49
3352 3870 8.341173 GTTGCATGTTTGAAATCACCATAAAAA 58.659 29.630 0.00 0.00 0.00 1.94
3392 3910 8.947115 AGGCGTAATATTTTCCTTATCTATTGC 58.053 33.333 0.00 0.00 0.00 3.56
3404 3922 6.423905 TCCTTATCTATTGCGATGCAGTAAAC 59.576 38.462 0.00 0.00 40.61 2.01
3461 3979 2.411904 CTCGAATCAGCTGCCCTTATC 58.588 52.381 9.47 0.00 0.00 1.75
3664 4182 8.900983 TTTCTTTGAGGATTTTGTAATTTGGG 57.099 30.769 0.00 0.00 0.00 4.12
3678 4196 3.806949 ATTTGGGTGACACAGTATGGT 57.193 42.857 8.08 0.00 43.62 3.55
3702 4220 2.568956 AGCATTAGAGTGCCTTCTGTGA 59.431 45.455 0.00 0.00 46.19 3.58
3712 4230 3.055819 GTGCCTTCTGTGATCCTAGTTGA 60.056 47.826 0.00 0.00 0.00 3.18
3766 4284 5.423015 CATCAACACTTGCATACTACTCCT 58.577 41.667 0.00 0.00 0.00 3.69
3783 4301 8.406730 ACTACTCCTTCCGTTCCTAAATATAG 57.593 38.462 0.00 0.00 0.00 1.31
3828 4348 3.560068 GGACTACATACGGAGCAAAATGG 59.440 47.826 0.00 0.00 0.00 3.16
3898 4418 9.665264 GTTTGTATTGAAATTTCGAAAGAGACT 57.335 29.630 16.80 0.00 43.69 3.24
3900 4420 9.663904 TTGTATTGAAATTTCGAAAGAGACTTG 57.336 29.630 16.80 0.00 43.69 3.16
3912 4435 8.530269 TCGAAAGAGACTTGTATTTAGAAACC 57.470 34.615 0.00 0.00 34.84 3.27
3934 4457 3.884091 CGAGGGAGTAGTATGTGCTAACT 59.116 47.826 0.00 0.00 0.00 2.24
3996 4592 3.253432 GTCAAACAACAAGGGCTCCTAAG 59.747 47.826 0.00 0.00 31.13 2.18
4078 4680 2.687935 GTTGTCAAGCCCTCTGAACAAA 59.312 45.455 0.00 0.00 32.69 2.83
4080 4682 3.565307 TGTCAAGCCCTCTGAACAAAAT 58.435 40.909 0.00 0.00 0.00 1.82
4081 4683 3.318839 TGTCAAGCCCTCTGAACAAAATG 59.681 43.478 0.00 0.00 0.00 2.32
4149 4751 2.493675 CTGCTAGTCTGCTTCAGTACCA 59.506 50.000 0.00 0.00 32.61 3.25
4158 4760 8.023021 AGTCTGCTTCAGTACCATTTATATGA 57.977 34.615 0.00 0.00 31.58 2.15
4159 4761 7.928706 AGTCTGCTTCAGTACCATTTATATGAC 59.071 37.037 0.00 0.00 31.58 3.06
4348 4950 0.404040 CCCAGCCTCACTTAACCCAA 59.596 55.000 0.00 0.00 0.00 4.12
4382 4984 6.882656 TCTCTCTAGATTTGATTGGTTCCAG 58.117 40.000 0.00 0.00 0.00 3.86
4392 4994 0.756294 TTGGTTCCAGAGCGTCTCAA 59.244 50.000 9.09 0.00 32.06 3.02
4451 5053 3.538614 GGCATGGCCGTCTCTCTA 58.461 61.111 8.35 0.00 39.62 2.43
4452 5054 2.053618 GGCATGGCCGTCTCTCTAT 58.946 57.895 8.35 0.00 39.62 1.98
4493 5098 5.474876 GGAATATATCCCTTTTCAGTGCCAG 59.525 44.000 0.00 0.00 43.00 4.85
4506 5111 6.692849 TTCAGTGCCAGGATCATAATCTAT 57.307 37.500 0.00 0.00 32.12 1.98
4528 5133 3.487574 TGCGCTTTTAAAAATGGTTCACG 59.512 39.130 9.73 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.924144 AGCTCACACTTTTTGTTGCAAA 58.076 36.364 0.00 0.00 35.67 3.68
108 109 0.539438 CCGCCTCCTCTAGAGCTCAT 60.539 60.000 17.77 3.63 41.74 2.90
150 151 3.301274 AGCCTTCGCCTCTATTAGACTT 58.699 45.455 0.00 0.00 34.57 3.01
186 187 0.110419 GCACGATTTGTAGCGCACAA 60.110 50.000 11.47 15.41 45.49 3.33
194 195 3.218844 TGCCGAAGCACGATTTGTA 57.781 47.368 4.96 0.00 46.52 2.41
212 213 0.250038 CTCGATTGTGGCCATCGGAT 60.250 55.000 23.28 9.59 38.26 4.18
217 218 0.749454 GCCTTCTCGATTGTGGCCAT 60.749 55.000 9.72 0.00 37.81 4.40
223 224 1.153549 GAGCCGCCTTCTCGATTGT 60.154 57.895 0.00 0.00 0.00 2.71
258 259 4.308899 GAAGTATTCGAGCCTAGAAGCA 57.691 45.455 0.00 0.00 34.17 3.91
275 276 0.683973 CCAGTCCTCTGCACTGAAGT 59.316 55.000 2.98 0.00 43.54 3.01
280 281 2.919856 ACGCCAGTCCTCTGCACT 60.920 61.111 0.00 0.00 40.09 4.40
317 318 0.591170 CCTTGCTAAACCACCGTGTG 59.409 55.000 0.00 0.00 0.00 3.82
383 384 3.714144 TCCCTCTCTCTTTCTCGGATTT 58.286 45.455 0.00 0.00 0.00 2.17
424 425 2.180308 CAAGACCCCCTAGACCTATCCT 59.820 54.545 0.00 0.00 0.00 3.24
434 435 1.794714 GAGATGAGCAAGACCCCCTA 58.205 55.000 0.00 0.00 0.00 3.53
436 437 1.144936 CGAGATGAGCAAGACCCCC 59.855 63.158 0.00 0.00 0.00 5.40
517 518 3.382832 CGTCTCCAACCCCTCGCT 61.383 66.667 0.00 0.00 0.00 4.93
645 1069 5.660533 AGATTTTTAGGGGGAAATGACCAA 58.339 37.500 0.00 0.00 0.00 3.67
655 1079 6.442885 ACCGGATATAGTAGATTTTTAGGGGG 59.557 42.308 9.46 0.00 0.00 5.40
656 1080 7.492077 ACCGGATATAGTAGATTTTTAGGGG 57.508 40.000 9.46 0.00 0.00 4.79
693 1117 2.239400 AGCAAAAGAACTGGCCCTAAC 58.761 47.619 0.00 0.00 0.00 2.34
694 1118 2.675658 AGCAAAAGAACTGGCCCTAA 57.324 45.000 0.00 0.00 0.00 2.69
696 1120 1.888391 GCTAGCAAAAGAACTGGCCCT 60.888 52.381 10.63 0.00 34.61 5.19
698 1122 1.539157 AGCTAGCAAAAGAACTGGCC 58.461 50.000 18.83 0.00 40.92 5.36
699 1123 3.650070 AAAGCTAGCAAAAGAACTGGC 57.350 42.857 18.83 0.00 40.38 4.85
726 1150 2.708325 AGGGGGCAGCTTATTCTAGAAG 59.292 50.000 11.53 0.00 0.00 2.85
727 1151 2.776665 AGGGGGCAGCTTATTCTAGAA 58.223 47.619 7.82 7.82 0.00 2.10
728 1152 2.496679 AGGGGGCAGCTTATTCTAGA 57.503 50.000 0.00 0.00 0.00 2.43
729 1153 2.303311 GGTAGGGGGCAGCTTATTCTAG 59.697 54.545 0.00 0.00 0.00 2.43
730 1154 2.335933 GGTAGGGGGCAGCTTATTCTA 58.664 52.381 0.00 0.00 0.00 2.10
731 1155 1.141185 GGTAGGGGGCAGCTTATTCT 58.859 55.000 0.00 0.00 0.00 2.40
732 1156 0.110678 GGGTAGGGGGCAGCTTATTC 59.889 60.000 0.00 0.00 0.00 1.75
733 1157 0.626277 TGGGTAGGGGGCAGCTTATT 60.626 55.000 0.00 0.00 0.00 1.40
734 1158 1.005556 TGGGTAGGGGGCAGCTTAT 59.994 57.895 0.00 0.00 0.00 1.73
735 1159 1.692749 CTGGGTAGGGGGCAGCTTA 60.693 63.158 0.00 0.00 0.00 3.09
736 1160 3.017581 CTGGGTAGGGGGCAGCTT 61.018 66.667 0.00 0.00 0.00 3.74
739 1163 1.062488 ATAAGCTGGGTAGGGGGCAG 61.062 60.000 0.00 0.00 0.00 4.85
740 1164 0.626277 AATAAGCTGGGTAGGGGGCA 60.626 55.000 0.00 0.00 0.00 5.36
741 1165 0.110678 GAATAAGCTGGGTAGGGGGC 59.889 60.000 0.00 0.00 0.00 5.80
742 1166 1.821088 AGAATAAGCTGGGTAGGGGG 58.179 55.000 0.00 0.00 0.00 5.40
743 1167 3.858135 TCTAGAATAAGCTGGGTAGGGG 58.142 50.000 0.00 0.00 0.00 4.79
744 1168 4.262678 GCTTCTAGAATAAGCTGGGTAGGG 60.263 50.000 5.44 0.00 44.75 3.53
745 1169 4.262678 GGCTTCTAGAATAAGCTGGGTAGG 60.263 50.000 13.28 0.00 46.81 3.18
746 1170 4.262678 GGGCTTCTAGAATAAGCTGGGTAG 60.263 50.000 13.28 0.00 46.81 3.18
747 1171 3.646637 GGGCTTCTAGAATAAGCTGGGTA 59.353 47.826 13.28 0.00 46.81 3.69
748 1172 2.439880 GGGCTTCTAGAATAAGCTGGGT 59.560 50.000 13.28 0.00 46.81 4.51
749 1173 2.439507 TGGGCTTCTAGAATAAGCTGGG 59.560 50.000 13.28 0.00 46.81 4.45
750 1174 3.845781 TGGGCTTCTAGAATAAGCTGG 57.154 47.619 13.28 0.00 46.81 4.85
751 1175 4.943705 TGTTTGGGCTTCTAGAATAAGCTG 59.056 41.667 13.28 0.00 46.81 4.24
752 1176 5.179452 TGTTTGGGCTTCTAGAATAAGCT 57.821 39.130 13.28 0.00 46.81 3.74
753 1177 5.897377 TTGTTTGGGCTTCTAGAATAAGC 57.103 39.130 5.44 5.98 46.90 3.09
754 1178 9.710900 AAATTTTGTTTGGGCTTCTAGAATAAG 57.289 29.630 5.44 0.00 0.00 1.73
756 1180 9.705290 GAAAATTTTGTTTGGGCTTCTAGAATA 57.295 29.630 8.47 0.00 0.00 1.75
757 1181 8.432013 AGAAAATTTTGTTTGGGCTTCTAGAAT 58.568 29.630 8.47 0.00 0.00 2.40
758 1182 7.791029 AGAAAATTTTGTTTGGGCTTCTAGAA 58.209 30.769 8.47 4.81 0.00 2.10
759 1183 7.360113 AGAAAATTTTGTTTGGGCTTCTAGA 57.640 32.000 8.47 0.00 0.00 2.43
760 1184 8.437360 AAAGAAAATTTTGTTTGGGCTTCTAG 57.563 30.769 21.37 0.00 33.13 2.43
761 1185 8.800370 AAAAGAAAATTTTGTTTGGGCTTCTA 57.200 26.923 22.37 0.00 34.41 2.10
762 1186 7.701539 AAAAGAAAATTTTGTTTGGGCTTCT 57.298 28.000 22.37 6.37 34.41 2.85
790 1214 9.257428 AGTAGTTAAGACTTGACTAATAGGCTT 57.743 33.333 18.46 0.00 42.30 4.35
791 1215 8.826293 AGTAGTTAAGACTTGACTAATAGGCT 57.174 34.615 18.46 10.18 34.13 4.58
795 1219 9.917887 AGCCTAGTAGTTAAGACTTGACTAATA 57.082 33.333 18.46 19.22 34.13 0.98
796 1220 8.826293 AGCCTAGTAGTTAAGACTTGACTAAT 57.174 34.615 19.74 19.74 34.13 1.73
797 1221 8.647256 AAGCCTAGTAGTTAAGACTTGACTAA 57.353 34.615 18.46 6.43 34.13 2.24
798 1222 8.108364 AGAAGCCTAGTAGTTAAGACTTGACTA 58.892 37.037 14.15 14.15 37.33 2.59
799 1223 6.949463 AGAAGCCTAGTAGTTAAGACTTGACT 59.051 38.462 16.02 16.02 37.33 3.41
800 1224 7.160547 AGAAGCCTAGTAGTTAAGACTTGAC 57.839 40.000 1.94 1.94 37.33 3.18
801 1225 8.874744 TTAGAAGCCTAGTAGTTAAGACTTGA 57.125 34.615 0.00 0.00 37.33 3.02
802 1226 9.924650 TTTTAGAAGCCTAGTAGTTAAGACTTG 57.075 33.333 0.00 0.00 37.33 3.16
804 1228 9.926158 GTTTTTAGAAGCCTAGTAGTTAAGACT 57.074 33.333 0.00 0.00 39.97 3.24
805 1229 9.702494 TGTTTTTAGAAGCCTAGTAGTTAAGAC 57.298 33.333 0.00 0.00 0.00 3.01
817 1241 9.271828 CAACCAAATTTATGTTTTTAGAAGCCT 57.728 29.630 3.25 0.00 0.00 4.58
818 1242 8.503196 CCAACCAAATTTATGTTTTTAGAAGCC 58.497 33.333 3.25 0.00 0.00 4.35
819 1243 8.503196 CCCAACCAAATTTATGTTTTTAGAAGC 58.497 33.333 3.25 0.00 0.00 3.86
820 1244 8.503196 GCCCAACCAAATTTATGTTTTTAGAAG 58.497 33.333 3.25 0.00 0.00 2.85
821 1245 8.214364 AGCCCAACCAAATTTATGTTTTTAGAA 58.786 29.630 3.25 0.00 0.00 2.10
822 1246 7.740805 AGCCCAACCAAATTTATGTTTTTAGA 58.259 30.769 3.25 0.00 0.00 2.10
823 1247 7.977789 AGCCCAACCAAATTTATGTTTTTAG 57.022 32.000 3.25 0.00 0.00 1.85
824 1248 8.214364 AGAAGCCCAACCAAATTTATGTTTTTA 58.786 29.630 3.25 0.00 0.00 1.52
825 1249 7.059788 AGAAGCCCAACCAAATTTATGTTTTT 58.940 30.769 3.25 0.00 0.00 1.94
826 1250 6.600388 AGAAGCCCAACCAAATTTATGTTTT 58.400 32.000 3.25 0.00 0.00 2.43
827 1251 6.186420 AGAAGCCCAACCAAATTTATGTTT 57.814 33.333 3.25 0.00 0.00 2.83
828 1252 5.823861 AGAAGCCCAACCAAATTTATGTT 57.176 34.783 0.00 0.00 0.00 2.71
829 1253 6.252995 TCTAGAAGCCCAACCAAATTTATGT 58.747 36.000 0.00 0.00 0.00 2.29
830 1254 6.773976 TCTAGAAGCCCAACCAAATTTATG 57.226 37.500 0.00 0.00 0.00 1.90
831 1255 7.978099 ATTCTAGAAGCCCAACCAAATTTAT 57.022 32.000 11.53 0.00 0.00 1.40
832 1256 8.887264 TTATTCTAGAAGCCCAACCAAATTTA 57.113 30.769 11.53 0.00 0.00 1.40
833 1257 7.579531 GCTTATTCTAGAAGCCCAACCAAATTT 60.580 37.037 11.53 0.00 42.90 1.82
834 1258 6.127338 GCTTATTCTAGAAGCCCAACCAAATT 60.127 38.462 11.53 0.00 42.90 1.82
835 1259 5.360999 GCTTATTCTAGAAGCCCAACCAAAT 59.639 40.000 11.53 0.00 42.90 2.32
836 1260 4.705023 GCTTATTCTAGAAGCCCAACCAAA 59.295 41.667 11.53 0.00 42.90 3.28
837 1261 4.270008 GCTTATTCTAGAAGCCCAACCAA 58.730 43.478 11.53 0.00 42.90 3.67
838 1262 3.886123 GCTTATTCTAGAAGCCCAACCA 58.114 45.455 11.53 0.00 42.90 3.67
846 1270 5.717654 CCCCCTACCTAGCTTATTCTAGAAG 59.282 48.000 11.53 0.00 38.61 2.85
847 1271 5.652324 CCCCCTACCTAGCTTATTCTAGAA 58.348 45.833 7.82 7.82 38.61 2.10
848 1272 4.510567 GCCCCCTACCTAGCTTATTCTAGA 60.511 50.000 0.00 0.00 38.61 2.43
849 1273 3.770388 GCCCCCTACCTAGCTTATTCTAG 59.230 52.174 0.00 0.00 36.63 2.43
850 1274 3.143359 TGCCCCCTACCTAGCTTATTCTA 59.857 47.826 0.00 0.00 0.00 2.10
851 1275 2.090153 TGCCCCCTACCTAGCTTATTCT 60.090 50.000 0.00 0.00 0.00 2.40
852 1276 2.303311 CTGCCCCCTACCTAGCTTATTC 59.697 54.545 0.00 0.00 0.00 1.75
853 1277 2.339769 CTGCCCCCTACCTAGCTTATT 58.660 52.381 0.00 0.00 0.00 1.40
854 1278 2.031495 CTGCCCCCTACCTAGCTTAT 57.969 55.000 0.00 0.00 0.00 1.73
855 1279 0.763223 GCTGCCCCCTACCTAGCTTA 60.763 60.000 0.00 0.00 0.00 3.09
856 1280 2.073101 GCTGCCCCCTACCTAGCTT 61.073 63.158 0.00 0.00 0.00 3.74
857 1281 2.446802 GCTGCCCCCTACCTAGCT 60.447 66.667 0.00 0.00 0.00 3.32
858 1282 0.763223 TAAGCTGCCCCCTACCTAGC 60.763 60.000 0.00 0.00 34.71 3.42
859 1283 2.031495 ATAAGCTGCCCCCTACCTAG 57.969 55.000 0.00 0.00 0.00 3.02
860 1284 2.054799 CAATAAGCTGCCCCCTACCTA 58.945 52.381 0.00 0.00 0.00 3.08
861 1285 0.846693 CAATAAGCTGCCCCCTACCT 59.153 55.000 0.00 0.00 0.00 3.08
862 1286 0.823769 GCAATAAGCTGCCCCCTACC 60.824 60.000 0.00 0.00 41.15 3.18
863 1287 0.106719 TGCAATAAGCTGCCCCCTAC 60.107 55.000 0.00 0.00 45.94 3.18
864 1288 0.183492 CTGCAATAAGCTGCCCCCTA 59.817 55.000 0.00 0.00 45.94 3.53
865 1289 1.076485 CTGCAATAAGCTGCCCCCT 60.076 57.895 0.00 0.00 45.94 4.79
866 1290 3.530067 CTGCAATAAGCTGCCCCC 58.470 61.111 0.00 0.00 45.94 5.40
873 1297 6.369799 GCTTCTAGAATAAGCTGCAATAAGC 58.630 40.000 5.44 3.48 44.75 3.09
874 1298 6.484643 TGGCTTCTAGAATAAGCTGCAATAAG 59.515 38.462 13.28 0.00 46.81 1.73
875 1299 6.260936 GTGGCTTCTAGAATAAGCTGCAATAA 59.739 38.462 13.28 0.00 46.81 1.40
876 1300 5.760253 GTGGCTTCTAGAATAAGCTGCAATA 59.240 40.000 13.28 0.00 46.81 1.90
877 1301 4.578105 GTGGCTTCTAGAATAAGCTGCAAT 59.422 41.667 13.28 0.00 46.81 3.56
878 1302 3.941483 GTGGCTTCTAGAATAAGCTGCAA 59.059 43.478 13.28 0.69 46.81 4.08
879 1303 3.535561 GTGGCTTCTAGAATAAGCTGCA 58.464 45.455 13.28 3.14 46.81 4.41
880 1304 2.875317 GGTGGCTTCTAGAATAAGCTGC 59.125 50.000 13.28 8.77 46.81 5.25
881 1305 4.142609 TGGTGGCTTCTAGAATAAGCTG 57.857 45.455 13.28 0.00 46.81 4.24
882 1306 4.844349 TTGGTGGCTTCTAGAATAAGCT 57.156 40.909 13.28 0.00 46.81 3.74
883 1307 5.648092 TCTTTTGGTGGCTTCTAGAATAAGC 59.352 40.000 5.44 5.98 46.90 3.09
884 1308 7.391833 AGTTCTTTTGGTGGCTTCTAGAATAAG 59.608 37.037 5.44 0.00 0.00 1.73
885 1309 7.174946 CAGTTCTTTTGGTGGCTTCTAGAATAA 59.825 37.037 5.44 0.00 0.00 1.40
886 1310 6.655003 CAGTTCTTTTGGTGGCTTCTAGAATA 59.345 38.462 5.44 0.00 0.00 1.75
887 1311 5.474876 CAGTTCTTTTGGTGGCTTCTAGAAT 59.525 40.000 5.44 0.00 0.00 2.40
888 1312 4.821805 CAGTTCTTTTGGTGGCTTCTAGAA 59.178 41.667 4.81 4.81 0.00 2.10
889 1313 4.389374 CAGTTCTTTTGGTGGCTTCTAGA 58.611 43.478 0.00 0.00 0.00 2.43
890 1314 3.503748 CCAGTTCTTTTGGTGGCTTCTAG 59.496 47.826 0.00 0.00 0.00 2.43
891 1315 3.486383 CCAGTTCTTTTGGTGGCTTCTA 58.514 45.455 0.00 0.00 0.00 2.10
892 1316 2.310538 CCAGTTCTTTTGGTGGCTTCT 58.689 47.619 0.00 0.00 0.00 2.85
893 1317 2.800881 CCAGTTCTTTTGGTGGCTTC 57.199 50.000 0.00 0.00 0.00 3.86
897 1321 0.469892 AGGGCCAGTTCTTTTGGTGG 60.470 55.000 6.18 0.00 38.02 4.61
898 1322 1.413118 AAGGGCCAGTTCTTTTGGTG 58.587 50.000 6.18 0.00 38.02 4.17
899 1323 3.322191 TTAAGGGCCAGTTCTTTTGGT 57.678 42.857 6.18 0.00 38.02 3.67
900 1324 4.089361 AGATTAAGGGCCAGTTCTTTTGG 58.911 43.478 6.18 0.00 38.78 3.28
901 1325 5.012893 AGAGATTAAGGGCCAGTTCTTTTG 58.987 41.667 6.18 0.00 0.00 2.44
902 1326 5.012893 CAGAGATTAAGGGCCAGTTCTTTT 58.987 41.667 6.18 0.00 0.00 2.27
903 1327 4.568592 CCAGAGATTAAGGGCCAGTTCTTT 60.569 45.833 6.18 0.00 0.00 2.52
904 1328 3.054065 CCAGAGATTAAGGGCCAGTTCTT 60.054 47.826 6.18 0.29 0.00 2.52
905 1329 2.507471 CCAGAGATTAAGGGCCAGTTCT 59.493 50.000 6.18 1.71 0.00 3.01
906 1330 2.422093 CCCAGAGATTAAGGGCCAGTTC 60.422 54.545 6.18 0.00 35.44 3.01
907 1331 1.566231 CCCAGAGATTAAGGGCCAGTT 59.434 52.381 6.18 0.00 35.44 3.16
908 1332 1.216990 CCCAGAGATTAAGGGCCAGT 58.783 55.000 6.18 0.00 35.44 4.00
913 1337 0.394565 CTCGGCCCAGAGATTAAGGG 59.605 60.000 0.00 0.00 45.68 3.95
914 1338 0.250081 GCTCGGCCCAGAGATTAAGG 60.250 60.000 11.49 0.00 40.57 2.69
915 1339 0.250081 GGCTCGGCCCAGAGATTAAG 60.250 60.000 11.49 0.00 44.06 1.85
916 1340 1.830145 GGCTCGGCCCAGAGATTAA 59.170 57.895 11.49 0.00 44.06 1.40
917 1341 3.550974 GGCTCGGCCCAGAGATTA 58.449 61.111 11.49 0.00 44.06 1.75
971 1395 0.895559 CTCTGGGCCTTTGGGTGAAC 60.896 60.000 4.53 0.00 34.45 3.18
976 1400 1.076485 CATCCTCTGGGCCTTTGGG 60.076 63.158 4.53 1.91 0.00 4.12
990 1414 2.019984 GACTTGTTCATCTGGGCATCC 58.980 52.381 0.00 0.00 0.00 3.51
991 1415 2.421424 GTGACTTGTTCATCTGGGCATC 59.579 50.000 0.00 0.00 36.32 3.91
1001 1425 5.366460 TGGGTTTATTACGTGACTTGTTCA 58.634 37.500 0.00 0.00 0.00 3.18
1142 1601 2.438434 GCGTGGTGGGAGATTGGG 60.438 66.667 0.00 0.00 0.00 4.12
1154 1613 1.857426 GAAATCGAAACGCGCGTGG 60.857 57.895 38.44 27.21 40.61 4.94
1239 1698 2.276680 GAATTGCGAACGCGAGCC 60.277 61.111 15.93 0.00 45.51 4.70
1249 1708 5.105752 TCCCCAAAAATAAATCGAATTGCG 58.894 37.500 0.00 0.00 42.69 4.85
1268 1727 0.183731 AGATGGCGATTTCCTTCCCC 59.816 55.000 0.00 0.00 32.42 4.81
1269 1728 1.141858 AGAGATGGCGATTTCCTTCCC 59.858 52.381 0.00 0.00 32.42 3.97
1272 1731 1.141858 GGGAGAGATGGCGATTTCCTT 59.858 52.381 0.00 0.00 0.00 3.36
1284 1743 0.540830 AATCTAGCCGCGGGAGAGAT 60.541 55.000 29.38 14.75 30.37 2.75
1343 1802 1.580942 CACCACGGCATCCAAACAG 59.419 57.895 0.00 0.00 0.00 3.16
1498 1957 1.082194 ACCTCCCCATCTCCAAACCTA 59.918 52.381 0.00 0.00 0.00 3.08
1501 1960 2.197465 ACTACCTCCCCATCTCCAAAC 58.803 52.381 0.00 0.00 0.00 2.93
1519 1978 6.350528 GCGTAACCTAGGGTAAGAGTTAAACT 60.351 42.308 22.37 0.00 33.12 2.66
1545 2004 7.482169 ACTGAACCAAGATACAGACAGATAA 57.518 36.000 0.00 0.00 34.88 1.75
1561 2020 4.462133 TGGAAAAATTACCGACTGAACCA 58.538 39.130 0.00 0.00 0.00 3.67
1562 2021 4.517832 ACTGGAAAAATTACCGACTGAACC 59.482 41.667 0.00 0.00 0.00 3.62
1563 2022 5.449304 CACTGGAAAAATTACCGACTGAAC 58.551 41.667 0.00 0.00 0.00 3.18
1564 2023 4.023536 GCACTGGAAAAATTACCGACTGAA 60.024 41.667 0.00 0.00 0.00 3.02
1565 2024 3.500680 GCACTGGAAAAATTACCGACTGA 59.499 43.478 0.00 0.00 0.00 3.41
1566 2025 3.666902 CGCACTGGAAAAATTACCGACTG 60.667 47.826 0.00 0.00 0.00 3.51
1568 2027 2.413634 CCGCACTGGAAAAATTACCGAC 60.414 50.000 0.00 0.00 42.00 4.79
1570 2029 1.807742 TCCGCACTGGAAAAATTACCG 59.192 47.619 0.00 0.00 46.38 4.02
1587 2065 3.440173 AGATGCACAGGTACAAATTTCCG 59.560 43.478 0.00 0.00 0.00 4.30
1600 2081 4.700700 TCATTCACAGGATAGATGCACAG 58.299 43.478 0.00 0.00 0.00 3.66
1703 2185 2.440980 GCATCAAGGGGTGGCCTC 60.441 66.667 3.32 0.00 0.00 4.70
1706 2188 3.070576 GTGGCATCAAGGGGTGGC 61.071 66.667 0.00 0.00 40.89 5.01
1707 2189 1.679977 CTGTGGCATCAAGGGGTGG 60.680 63.158 0.00 0.00 0.00 4.61
1708 2190 0.327924 TACTGTGGCATCAAGGGGTG 59.672 55.000 0.00 0.00 0.00 4.61
1716 2199 2.093973 ACACTAGTGCTACTGTGGCATC 60.094 50.000 22.90 14.65 41.86 3.91
1720 2203 6.266323 CAATACTACACTAGTGCTACTGTGG 58.734 44.000 22.90 6.75 39.81 4.17
1725 2208 5.258456 TGGCAATACTACACTAGTGCTAC 57.742 43.478 22.90 4.03 37.75 3.58
1730 2213 6.605995 TGACTACATGGCAATACTACACTAGT 59.394 38.462 0.00 0.00 42.68 2.57
1731 2214 7.039313 TGACTACATGGCAATACTACACTAG 57.961 40.000 0.00 0.00 0.00 2.57
1732 2215 7.433680 CATGACTACATGGCAATACTACACTA 58.566 38.462 0.00 0.00 46.95 2.74
1733 2216 5.932619 TGACTACATGGCAATACTACACT 57.067 39.130 0.00 0.00 0.00 3.55
1745 2234 6.464892 ATCCACAGGAATACATGACTACATGG 60.465 42.308 13.44 0.00 45.31 3.66
1760 2249 3.599343 CATGACTTCGAATCCACAGGAA 58.401 45.455 0.00 0.00 34.34 3.36
1763 2252 3.251479 TCCATGACTTCGAATCCACAG 57.749 47.619 0.00 0.00 0.00 3.66
1838 2327 3.118920 TCAACTCAAAACTCTGACGACCA 60.119 43.478 0.00 0.00 0.00 4.02
1842 2331 4.318404 GCTTCTCAACTCAAAACTCTGACG 60.318 45.833 0.00 0.00 0.00 4.35
1889 2378 2.289694 ACTGCAGTCCAACTACATGACC 60.290 50.000 15.25 0.00 0.00 4.02
1890 2379 2.996621 GACTGCAGTCCAACTACATGAC 59.003 50.000 32.55 6.59 39.07 3.06
1912 2401 3.370104 ACGATTGGGGGCATTATCAAAA 58.630 40.909 0.00 0.00 0.00 2.44
2029 2518 1.902918 ATGGCGCAAGAAAGGCACA 60.903 52.632 10.83 0.00 45.57 4.57
2158 2647 0.108186 CATCCTCGCTGTAGTGCCAA 60.108 55.000 0.00 0.00 0.00 4.52
2167 2656 0.596083 GATCGACACCATCCTCGCTG 60.596 60.000 0.00 0.00 0.00 5.18
2202 2691 4.009675 GGAGTAATGCACATGTGGAGAAA 58.990 43.478 26.55 11.02 33.50 2.52
2210 2699 7.645340 GCTAAAGTTAATGGAGTAATGCACATG 59.355 37.037 0.00 0.00 0.00 3.21
2240 2729 4.545610 CCAACAACAAGCACATATTTCGT 58.454 39.130 0.00 0.00 0.00 3.85
2241 2730 3.364621 GCCAACAACAAGCACATATTTCG 59.635 43.478 0.00 0.00 0.00 3.46
2613 3110 0.679505 GGTGCACACACTGGTCTCTA 59.320 55.000 20.43 0.00 46.57 2.43
2948 3454 0.035458 GCTGGAGCACCTAACAGTGT 59.965 55.000 0.71 0.00 40.04 3.55
2997 3503 2.854963 AGCTGAAGTTGATTGTGCTGA 58.145 42.857 0.00 0.00 0.00 4.26
3017 3523 4.210331 GGAACGGAGGGAGTATAACTGTA 58.790 47.826 0.00 0.00 0.00 2.74
3028 3535 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
3029 3536 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3030 3537 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3031 3538 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3032 3539 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
3033 3540 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
3034 3541 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
3035 3542 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
3036 3543 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
3037 3544 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
3038 3545 4.092821 TCATTTCAGCGACGAGTAATTTGG 59.907 41.667 0.00 0.00 0.00 3.28
3039 3546 5.203358 TCATTTCAGCGACGAGTAATTTG 57.797 39.130 0.00 0.00 0.00 2.32
3040 3547 5.856126 TTCATTTCAGCGACGAGTAATTT 57.144 34.783 0.00 0.00 0.00 1.82
3041 3548 5.351465 ACATTCATTTCAGCGACGAGTAATT 59.649 36.000 0.00 0.00 0.00 1.40
3042 3549 4.870426 ACATTCATTTCAGCGACGAGTAAT 59.130 37.500 0.00 0.00 0.00 1.89
3043 3550 4.242475 ACATTCATTTCAGCGACGAGTAA 58.758 39.130 0.00 0.00 0.00 2.24
3044 3551 3.845178 ACATTCATTTCAGCGACGAGTA 58.155 40.909 0.00 0.00 0.00 2.59
3045 3552 2.688507 ACATTCATTTCAGCGACGAGT 58.311 42.857 0.00 0.00 0.00 4.18
3046 3553 4.742167 AGATACATTCATTTCAGCGACGAG 59.258 41.667 0.00 0.00 0.00 4.18
3047 3554 4.682787 AGATACATTCATTTCAGCGACGA 58.317 39.130 0.00 0.00 0.00 4.20
3048 3555 5.915196 TCTAGATACATTCATTTCAGCGACG 59.085 40.000 0.00 0.00 0.00 5.12
3049 3556 7.436673 AGTTCTAGATACATTCATTTCAGCGAC 59.563 37.037 0.00 0.00 0.00 5.19
3050 3557 7.492524 AGTTCTAGATACATTCATTTCAGCGA 58.507 34.615 0.00 0.00 0.00 4.93
3051 3558 7.706281 AGTTCTAGATACATTCATTTCAGCG 57.294 36.000 0.00 0.00 0.00 5.18
3078 3585 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
3079 3586 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
3080 3587 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
3081 3588 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
3082 3589 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
3083 3590 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
3084 3591 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
3085 3592 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
3086 3593 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
3087 3594 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
3088 3595 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
3089 3596 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
3090 3597 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
3091 3598 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
3092 3599 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
3093 3600 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
3094 3601 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
3095 3602 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
3096 3603 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
3097 3604 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
3098 3605 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
3099 3606 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
3100 3607 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
3101 3608 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
3102 3609 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
3103 3610 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
3104 3611 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
3105 3612 3.582780 ACTCCGTTCCGAATTACTTGTC 58.417 45.455 0.00 0.00 0.00 3.18
3106 3613 3.672767 ACTCCGTTCCGAATTACTTGT 57.327 42.857 0.00 0.00 0.00 3.16
3107 3614 4.741342 ACTACTCCGTTCCGAATTACTTG 58.259 43.478 0.00 0.00 0.00 3.16
3108 3615 5.163612 GGTACTACTCCGTTCCGAATTACTT 60.164 44.000 0.00 0.00 0.00 2.24
3109 3616 4.336713 GGTACTACTCCGTTCCGAATTACT 59.663 45.833 0.00 0.00 0.00 2.24
3110 3617 4.096382 TGGTACTACTCCGTTCCGAATTAC 59.904 45.833 0.00 0.00 0.00 1.89
3111 3618 4.269183 TGGTACTACTCCGTTCCGAATTA 58.731 43.478 0.00 0.00 0.00 1.40
3112 3619 3.091545 TGGTACTACTCCGTTCCGAATT 58.908 45.455 0.00 0.00 0.00 2.17
3113 3620 2.726821 TGGTACTACTCCGTTCCGAAT 58.273 47.619 0.00 0.00 0.00 3.34
3114 3621 2.198827 TGGTACTACTCCGTTCCGAA 57.801 50.000 0.00 0.00 0.00 4.30
3115 3622 2.425143 ATGGTACTACTCCGTTCCGA 57.575 50.000 0.00 0.00 0.00 4.55
3116 3623 3.515330 AAATGGTACTACTCCGTTCCG 57.485 47.619 0.00 0.00 33.64 4.30
3117 3624 4.160252 TGGTAAATGGTACTACTCCGTTCC 59.840 45.833 0.00 0.00 33.64 3.62
3118 3625 5.329035 TGGTAAATGGTACTACTCCGTTC 57.671 43.478 0.00 0.00 33.64 3.95
3119 3626 5.246883 AGTTGGTAAATGGTACTACTCCGTT 59.753 40.000 0.00 0.00 35.94 4.44
3120 3627 4.774200 AGTTGGTAAATGGTACTACTCCGT 59.226 41.667 0.00 0.00 0.00 4.69
3121 3628 5.334724 AGTTGGTAAATGGTACTACTCCG 57.665 43.478 0.00 0.00 0.00 4.63
3122 3629 6.704310 TCAAGTTGGTAAATGGTACTACTCC 58.296 40.000 2.34 0.00 0.00 3.85
3123 3630 8.611654 TTTCAAGTTGGTAAATGGTACTACTC 57.388 34.615 2.34 0.00 0.00 2.59
3124 3631 8.983702 TTTTCAAGTTGGTAAATGGTACTACT 57.016 30.769 2.34 0.00 0.00 2.57
3125 3632 9.059260 TCTTTTCAAGTTGGTAAATGGTACTAC 57.941 33.333 2.34 0.00 0.00 2.73
3126 3633 9.802039 ATCTTTTCAAGTTGGTAAATGGTACTA 57.198 29.630 2.34 0.00 0.00 1.82
3127 3634 8.576442 CATCTTTTCAAGTTGGTAAATGGTACT 58.424 33.333 2.34 0.00 0.00 2.73
3128 3635 7.812669 CCATCTTTTCAAGTTGGTAAATGGTAC 59.187 37.037 2.34 0.00 41.43 3.34
3129 3636 7.524698 GCCATCTTTTCAAGTTGGTAAATGGTA 60.525 37.037 18.14 4.29 45.86 3.25
3130 3637 6.741240 GCCATCTTTTCAAGTTGGTAAATGGT 60.741 38.462 18.14 5.52 45.86 3.55
3131 3638 5.639082 GCCATCTTTTCAAGTTGGTAAATGG 59.361 40.000 12.94 10.86 45.86 3.16
3266 3782 1.827969 AGACATCGGGGAGAAAGACTG 59.172 52.381 0.00 0.00 0.00 3.51
3307 3823 9.844790 CATGCAACAGAGTAAATAAAATTCTGA 57.155 29.630 6.79 0.00 38.81 3.27
3392 3910 3.612423 TCATGTTCTCGTTTACTGCATCG 59.388 43.478 0.00 0.00 0.00 3.84
3404 3922 0.803768 CCCTCGTGCTCATGTTCTCG 60.804 60.000 0.00 0.00 0.00 4.04
3664 4182 0.798776 GCTGCACCATACTGTGTCAC 59.201 55.000 0.00 0.00 38.52 3.67
3678 4196 1.280133 AGAAGGCACTCTAATGCTGCA 59.720 47.619 4.13 4.13 45.38 4.41
3702 4220 3.767309 ACTCAGGAGGTCAACTAGGAT 57.233 47.619 0.83 0.00 0.00 3.24
3798 4318 4.404640 CTCCGTATGTAGTCCCTATTGGA 58.595 47.826 0.00 0.00 42.41 3.53
3799 4319 3.056749 GCTCCGTATGTAGTCCCTATTGG 60.057 52.174 0.00 0.00 0.00 3.16
3800 4320 3.572682 TGCTCCGTATGTAGTCCCTATTG 59.427 47.826 0.00 0.00 0.00 1.90
3801 4321 3.840991 TGCTCCGTATGTAGTCCCTATT 58.159 45.455 0.00 0.00 0.00 1.73
3803 4323 3.301794 TTGCTCCGTATGTAGTCCCTA 57.698 47.619 0.00 0.00 0.00 3.53
3893 4413 5.811100 CCCTCGGTTTCTAAATACAAGTCTC 59.189 44.000 0.00 0.00 0.00 3.36
3898 4418 5.750352 ACTCCCTCGGTTTCTAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
3899 4419 5.954150 ACTACTCCCTCGGTTTCTAAATACA 59.046 40.000 0.00 0.00 0.00 2.29
3900 4420 6.462552 ACTACTCCCTCGGTTTCTAAATAC 57.537 41.667 0.00 0.00 0.00 1.89
3912 4435 3.884091 AGTTAGCACATACTACTCCCTCG 59.116 47.826 0.00 0.00 0.00 4.63
3934 4457 2.431454 TCATAATTGTGCCACGAAGCA 58.569 42.857 0.00 0.00 41.46 3.91
3996 4592 7.762159 TCACTTCAACTTTCCCAAAACATAAAC 59.238 33.333 0.00 0.00 0.00 2.01
4078 4680 5.935789 CAGTTCAATCCAGCCATTTTTCATT 59.064 36.000 0.00 0.00 0.00 2.57
4080 4682 4.588106 TCAGTTCAATCCAGCCATTTTTCA 59.412 37.500 0.00 0.00 0.00 2.69
4081 4683 5.138125 TCAGTTCAATCCAGCCATTTTTC 57.862 39.130 0.00 0.00 0.00 2.29
4149 4751 5.704354 TGGCCTGTGATTGGTCATATAAAT 58.296 37.500 3.32 0.00 33.83 1.40
4158 4760 1.895131 GAAACATGGCCTGTGATTGGT 59.105 47.619 14.47 0.00 38.39 3.67
4159 4761 1.205417 GGAAACATGGCCTGTGATTGG 59.795 52.381 14.47 0.00 38.39 3.16
4236 4838 2.686915 CCAGGCAATCAGATCAAGGAAC 59.313 50.000 0.00 0.00 0.00 3.62
4382 4984 1.658095 GCTCATCAGTTTGAGACGCTC 59.342 52.381 5.67 0.58 44.88 5.03
4392 4994 5.279156 GGGACTTTTCAAATGCTCATCAGTT 60.279 40.000 0.00 0.00 32.54 3.16
4449 5051 3.214697 CTGGCTCGATGCTAGTGATAG 57.785 52.381 10.57 0.00 44.03 2.08
4493 5098 9.677567 TTTTTAAAAGCGCATAGATTATGATCC 57.322 29.630 11.47 0.00 38.45 3.36
4506 5111 3.487574 CGTGAACCATTTTTAAAAGCGCA 59.512 39.130 11.47 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.