AutoCloner

Multiple sequence alignment - TraesCS5D01G295900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G295900	chr5D	100.000	3031	0	0	1	3031	393754158	393751128	0.000000e+00	5598.0
1	TraesCS5D01G295900	chr5D	93.500	400	24	2	2358	2755	437769120	437769519	7.240000e-166	593.0
2	TraesCS5D01G295900	chr5D	82.622	656	81	21	1003	1646	393570174	393569540	1.590000e-152	549.0
3	TraesCS5D01G295900	chr5D	85.604	389	45	8	1258	1646	393608496	393608119	6.090000e-107	398.0
4	TraesCS5D01G295900	chr5D	85.675	363	42	8	1284	1646	393712116	393711764	1.030000e-99	374.0
5	TraesCS5D01G295900	chr5D	95.455	44	2	0	718	761	393753398	393753355	1.510000e-08	71.3
6	TraesCS5D01G295900	chr5D	95.455	44	2	0	761	804	393753441	393753398	1.510000e-08	71.3
7	TraesCS5D01G295900	chr5D	93.478	46	3	0	2220	2265	393751910	393751865	5.420000e-08	69.4
8	TraesCS5D01G295900	chr5D	93.478	46	3	0	2249	2294	393751939	393751894	5.420000e-08	69.4
9	TraesCS5D01G295900	chr5B	92.816	2283	120	14	2	2265	473627081	473624824	0.000000e+00	3267.0
10	TraesCS5D01G295900	chr5B	92.431	872	59	4	1381	2249	473454935	473454068	0.000000e+00	1238.0
11	TraesCS5D01G295900	chr5B	83.892	627	65	23	1032	1646	473292147	473291545	1.580000e-157	566.0
12	TraesCS5D01G295900	chr5B	97.727	44	1	0	718	761	473626336	473626293	3.240000e-10	76.8
13	TraesCS5D01G295900	chr5B	95.455	44	2	0	761	804	473626379	473626336	1.510000e-08	71.3
14	TraesCS5D01G295900	chr5A	91.726	1402	77	19	2	1382	495842199	495840816	0.000000e+00	1910.0
15	TraesCS5D01G295900	chr5A	89.344	976	56	27	1381	2321	495840695	495839733	0.000000e+00	1182.0
16	TraesCS5D01G295900	chr5A	90.171	702	39	11	2358	3031	634055899	634056598	0.000000e+00	887.0
17	TraesCS5D01G295900	chr5A	82.040	657	81	24	996	1642	495340117	495339488	2.680000e-145	525.0
18	TraesCS5D01G295900	chr5A	83.810	525	41	27	1827	2320	495602136	495601625	2.750000e-125	459.0
19	TraesCS5D01G295900	chr5A	82.136	515	49	26	1827	2311	495735552	495735051	4.710000e-108	401.0
20	TraesCS5D01G295900	chr5A	85.025	394	44	6	1258	1646	495359512	495359129	1.320000e-103	387.0
21	TraesCS5D01G295900	chr5A	95.455	44	2	0	718	761	495841440	495841397	1.510000e-08	71.3
22	TraesCS5D01G295900	chr5A	93.478	46	3	0	2249	2294	495601726	495601681	5.420000e-08	69.4
23	TraesCS5D01G295900	chr5A	97.436	39	1	0	766	804	495841478	495841440	1.950000e-07	67.6
24	TraesCS5D01G295900	chr3A	87.291	716	19	10	2360	3031	437664029	437664716	0.000000e+00	752.0
25	TraesCS5D01G295900	chr6D	91.068	571	24	1	2488	3031	429907456	429906886	0.000000e+00	747.0
26	TraesCS5D01G295900	chr1A	89.860	572	52	5	2358	2924	583328609	583329179	0.000000e+00	730.0
27	TraesCS5D01G295900	chr1A	96.491	285	10	0	2747	3031	39634290	39634574	3.540000e-129	472.0
28	TraesCS5D01G295900	chr1B	86.393	610	43	20	2357	2928	56994654	56995261	5.510000e-177	630.0
29	TraesCS5D01G295900	chr1B	83.993	581	61	20	2377	2928	38583801	38584378	2.070000e-146	529.0
30	TraesCS5D01G295900	chr1B	90.463	367	32	3	2357	2722	12677860	12677496	5.880000e-132	481.0
31	TraesCS5D01G295900	chr4B	84.967	612	44	25	2357	2924	132343561	132344168	7.290000e-161	577.0
32	TraesCS5D01G295900	chr2D	91.415	431	10	1	2628	3031	360554194	360554624	1.580000e-157	566.0
33	TraesCS5D01G295900	chr2D	97.552	286	7	0	2746	3031	574116525	574116810	9.770000e-135	490.0
34	TraesCS5D01G295900	chr2D	89.474	380	13	3	2679	3031	618072761	618073140	3.560000e-124	455.0
35	TraesCS5D01G295900	chr1D	91.832	404	27	1	2527	2924	11318846	11318443	2.640000e-155	558.0
36	TraesCS5D01G295900	chr7D	91.268	355	29	2	2356	2708	2532636	2532990	1.630000e-132	483.0
37	TraesCS5D01G295900	chr7D	93.706	286	17	1	2746	3031	2533135	2533419	7.770000e-116	427.0
38	TraesCS5D01G295900	chr3B	82.897	573	37	16	2358	2887	5834723	5834169	2.750000e-125	459.0
39	TraesCS5D01G295900	chr3B	97.500	40	1	0	2716	2755	708394527	708394488	5.420000e-08	69.4
40	TraesCS5D01G295900	chr7B	93.431	274	17	1	2759	3031	698673216	698673489	3.640000e-109	405.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G295900	chr5D	393751128	393754158	3030	True	1175.880000	5598	95.573200	1	3031	5	chr5D.!!$R4	3030
1	TraesCS5D01G295900	chr5D	393569540	393570174	634	True	549.000000	549	82.622000	1003	1646	1	chr5D.!!$R1	643
2	TraesCS5D01G295900	chr5B	473454068	473454935	867	True	1238.000000	1238	92.431000	1381	2249	1	chr5B.!!$R2	868
3	TraesCS5D01G295900	chr5B	473624824	473627081	2257	True	1138.366667	3267	95.332667	2	2265	3	chr5B.!!$R3	2263
4	TraesCS5D01G295900	chr5B	473291545	473292147	602	True	566.000000	566	83.892000	1032	1646	1	chr5B.!!$R1	614
5	TraesCS5D01G295900	chr5A	634055899	634056598	699	False	887.000000	887	90.171000	2358	3031	1	chr5A.!!$F1	673
6	TraesCS5D01G295900	chr5A	495839733	495842199	2466	True	807.725000	1910	93.490250	2	2321	4	chr5A.!!$R5	2319
7	TraesCS5D01G295900	chr5A	495339488	495340117	629	True	525.000000	525	82.040000	996	1642	1	chr5A.!!$R1	646
8	TraesCS5D01G295900	chr5A	495735051	495735552	501	True	401.000000	401	82.136000	1827	2311	1	chr5A.!!$R3	484
9	TraesCS5D01G295900	chr5A	495601625	495602136	511	True	264.200000	459	88.644000	1827	2320	2	chr5A.!!$R4	493
10	TraesCS5D01G295900	chr3A	437664029	437664716	687	False	752.000000	752	87.291000	2360	3031	1	chr3A.!!$F1	671
11	TraesCS5D01G295900	chr6D	429906886	429907456	570	True	747.000000	747	91.068000	2488	3031	1	chr6D.!!$R1	543
12	TraesCS5D01G295900	chr1A	583328609	583329179	570	False	730.000000	730	89.860000	2358	2924	1	chr1A.!!$F2	566
13	TraesCS5D01G295900	chr1B	56994654	56995261	607	False	630.000000	630	86.393000	2357	2928	1	chr1B.!!$F2	571
14	TraesCS5D01G295900	chr1B	38583801	38584378	577	False	529.000000	529	83.993000	2377	2928	1	chr1B.!!$F1	551
15	TraesCS5D01G295900	chr4B	132343561	132344168	607	False	577.000000	577	84.967000	2357	2924	1	chr4B.!!$F1	567
16	TraesCS5D01G295900	chr7D	2532636	2533419	783	False	455.000000	483	92.487000	2356	3031	2	chr7D.!!$F1	675
17	TraesCS5D01G295900	chr3B	5834169	5834723	554	True	459.000000	459	82.897000	2358	2887	1	chr3B.!!$R1	529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
496	501	0.185901	AGGTCCTTGAGCCTGCAAAA	59.814	50.0	0.0	0.0	33.13	2.44	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2332	2563	0.178767	TAGTCTGTCCGCTACCGCTA	59.821	55.0	0.0	0.0	0.0	4.26	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
156	157	3.676873	GCAAGGCCAACAATTATCACAGG	60.677	47.826	5.01	0.00	0.00	4.00
203	204	9.418045	TCTTTTTGAAGTTTTTAGTTTGACAGG	57.582	29.630	0.00	0.00	0.00	4.00
332	337	8.267894	GTCCCCTATATATGCTGTATCACAATT	58.732	37.037	0.00	0.00	0.00	2.32
366	371	3.032459	AGACTTGCCTAGCTACTTACCC	58.968	50.000	0.00	0.00	0.00	3.69
395	400	0.767375	AGGAGCAGCAGAAGGACAAA	59.233	50.000	0.00	0.00	0.00	2.83
398	403	2.617532	GGAGCAGCAGAAGGACAAAGAT	60.618	50.000	0.00	0.00	0.00	2.40
405	410	0.813821	GAAGGACAAAGATGGCAGCC	59.186	55.000	3.66	3.66	35.69	4.85
445	450	4.517815	GGCGCGACGACCCCATTA	62.518	66.667	12.10	0.00	0.00	1.90
460	465	3.012518	CCCATTAATCGGCTGATGGATC	58.987	50.000	9.28	0.00	41.20	3.36
463	468	4.321718	CATTAATCGGCTGATGGATCTGT	58.678	43.478	9.28	0.00	34.24	3.41
496	501	0.185901	AGGTCCTTGAGCCTGCAAAA	59.814	50.000	0.00	0.00	33.13	2.44
575	580	2.594541	GAGCCGATTTAGCTCGTGG	58.405	57.895	0.00	0.00	46.58	4.94
699	704	2.357517	ACTCGCAACGGCTTCCTG	60.358	61.111	0.00	0.00	38.10	3.86
700	705	2.048222	CTCGCAACGGCTTCCTGA	60.048	61.111	0.00	0.00	38.10	3.86
774	789	0.333312	TGGTTGGGTGTGGTTGTTCT	59.667	50.000	0.00	0.00	0.00	3.01
798	813	2.238646	TGTCCGACTTGCCATAGGATTT	59.761	45.455	0.00	0.00	33.15	2.17
830	845	2.710902	CGTGATCCAGGCCGAGTCA	61.711	63.158	0.00	0.00	0.00	3.41
850	865	1.462731	GGTTGCACATGTTCCCTGCA	61.463	55.000	3.97	3.97	39.15	4.41
981	1003	1.752310	CCAGCTCTCGAGAGGCTCA	60.752	63.158	36.65	6.82	42.29	4.26
1260	1320	2.763448	TCTCTCCTTGCTTAGCTCTTCC	59.237	50.000	5.60	0.00	0.00	3.46
1367	1432	4.514577	CGCCCTCCGCCACTACAG	62.515	72.222	0.00	0.00	0.00	2.74
1434	1621	1.738830	CGCGTACGTGGGTTTCCAT	60.739	57.895	20.84	0.00	46.09	3.41
1539	1726	4.338327	GTCACCGACGAGCACTTT	57.662	55.556	0.00	0.00	0.00	2.66
1659	1849	3.988517	GAGAAAACAATCGTCTCTTCGGT	59.011	43.478	0.00	0.00	35.84	4.69
1712	1905	5.626142	TCTCTATCGACAGATAAGAAGCCT	58.374	41.667	0.00	0.00	38.73	4.58
1791	1984	1.261238	CCCTCTTGACGGGAGCTTCT	61.261	60.000	0.00	0.00	44.90	2.85
1989	2188	1.843206	GGGCTCTCTCCTCCTTTGATT	59.157	52.381	0.00	0.00	0.00	2.57
2014	2213	5.414789	TTTCCGTTATCTCATGACAAGGA	57.585	39.130	0.00	0.00	0.00	3.36
2046	2245	4.556699	GCCTTTGACGATAAGCTTGTGTTT	60.557	41.667	9.86	0.00	0.00	2.83
2156	2386	9.833182	GGATTTTGTAAATGTTTTGTTTGTGTT	57.167	25.926	0.00	0.00	0.00	3.32
2212	2442	4.383010	CCAAAAGCTCTTCAAGTTTGGGTT	60.383	41.667	13.71	0.00	0.00	4.11
2305	2536	6.294286	CCCTAAGATAGACTAGCTTTCCTTCG	60.294	46.154	17.57	1.12	35.75	3.79
2321	2552	4.533815	TCCTTCGTAATTCCTAGAGCTGA	58.466	43.478	0.00	0.00	0.00	4.26
2322	2553	4.954202	TCCTTCGTAATTCCTAGAGCTGAA	59.046	41.667	0.00	0.00	0.00	3.02
2323	2554	5.598830	TCCTTCGTAATTCCTAGAGCTGAAT	59.401	40.000	0.00	0.00	32.72	2.57
2324	2555	6.098409	TCCTTCGTAATTCCTAGAGCTGAATT	59.902	38.462	12.71	12.71	42.28	2.17
2325	2556	7.287005	TCCTTCGTAATTCCTAGAGCTGAATTA	59.713	37.037	11.11	11.11	40.60	1.40
2326	2557	7.926555	CCTTCGTAATTCCTAGAGCTGAATTAA	59.073	37.037	14.97	5.26	42.15	1.40
2327	2558	8.644318	TTCGTAATTCCTAGAGCTGAATTAAC	57.356	34.615	14.97	10.30	42.15	2.01
2328	2559	7.778083	TCGTAATTCCTAGAGCTGAATTAACA	58.222	34.615	14.97	5.81	42.15	2.41
2329	2560	7.921214	TCGTAATTCCTAGAGCTGAATTAACAG	59.079	37.037	14.97	11.10	42.15	3.16
2330	2561	7.921214	CGTAATTCCTAGAGCTGAATTAACAGA	59.079	37.037	14.97	0.00	42.15	3.41
2331	2562	9.601217	GTAATTCCTAGAGCTGAATTAACAGAA	57.399	33.333	14.97	0.00	42.15	3.02
2334	2565	9.995003	ATTCCTAGAGCTGAATTAACAGAATAG	57.005	33.333	0.00	0.00	39.94	1.73
2335	2566	7.437748	TCCTAGAGCTGAATTAACAGAATAGC	58.562	38.462	0.00	0.00	39.94	2.97
2336	2567	6.364706	CCTAGAGCTGAATTAACAGAATAGCG	59.635	42.308	0.00	0.00	39.94	4.26
2337	2568	5.053145	AGAGCTGAATTAACAGAATAGCGG	58.947	41.667	0.00	0.00	39.94	5.52
2338	2569	4.770795	AGCTGAATTAACAGAATAGCGGT	58.229	39.130	0.00	0.00	39.94	5.68
2339	2570	5.914033	AGCTGAATTAACAGAATAGCGGTA	58.086	37.500	0.00	0.00	39.94	4.02
2340	2571	5.986135	AGCTGAATTAACAGAATAGCGGTAG	59.014	40.000	0.00	0.00	39.94	3.18
2341	2572	5.333416	GCTGAATTAACAGAATAGCGGTAGC	60.333	44.000	0.00	0.00	40.87	3.58
2342	2573	5.107837	CTGAATTAACAGAATAGCGGTAGCG	60.108	44.000	10.57	10.57	43.26	4.26
2343	2574	7.976351	CTGAATTAACAGAATAGCGGTAGCGG	61.976	46.154	17.08	0.00	43.26	5.52
2351	2582	3.506108	GCGGTAGCGGACAGACTA	58.494	61.111	17.08	0.00	0.00	2.59
2352	2583	1.355916	GCGGTAGCGGACAGACTAG	59.644	63.158	17.08	0.00	0.00	2.57
2353	2584	1.355916	CGGTAGCGGACAGACTAGC	59.644	63.158	6.39	0.00	34.34	3.42
2354	2585	1.355916	GGTAGCGGACAGACTAGCG	59.644	63.158	0.00	0.00	34.34	4.26
2443	2675	3.756783	CCCCTCCTCCTCCCTCGT	61.757	72.222	0.00	0.00	0.00	4.18
2484	2716	2.670934	CGAAGCCCTGCTGTTGCT	60.671	61.111	0.00	0.00	39.62	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
200	201	9.480053	AAAACAACAGATGTCATTTATTTCCTG	57.520	29.630	0.00	0.00	42.99	3.86
252	253	7.617533	AAATGCACTAACGTTTATTTGTGTC	57.382	32.000	5.91	6.01	37.55	3.67
292	293	0.038166	GGGGACATGCTTCCACTGAA	59.962	55.000	4.85	0.00	35.97	3.02
294	295	4.326255	GGGGACATGCTTCCACTG	57.674	61.111	4.85	0.00	35.97	3.66
366	371	2.320587	GCTGCTCCTTGTGTCCACG	61.321	63.158	0.00	0.00	0.00	4.94
445	450	1.269988	CGACAGATCCATCAGCCGATT	60.270	52.381	0.00	0.00	0.00	3.34
460	465	1.135373	ACCTACGTTGATCTGCGACAG	60.135	52.381	14.47	10.71	0.00	3.51
463	468	0.454600	GGACCTACGTTGATCTGCGA	59.545	55.000	14.47	0.94	0.00	5.10
496	501	5.189342	TCCTGAGAAGAGAGAAGATTGCATT	59.811	40.000	0.00	0.00	0.00	3.56
699	704	1.666872	CGTCCCGTCAACCTTGGTC	60.667	63.158	0.00	0.00	0.00	4.02
700	705	2.424302	CGTCCCGTCAACCTTGGT	59.576	61.111	0.00	0.00	0.00	3.67
774	789	0.249120	CTATGGCAAGTCGGACACCA	59.751	55.000	16.56	16.56	34.28	4.17
798	813	4.308458	CACGGACCCGAGCAACCA	62.308	66.667	16.07	0.00	42.83	3.67
830	845	1.181098	GCAGGGAACATGTGCAACCT	61.181	55.000	6.08	0.50	37.16	3.50
850	865	6.546403	ACGTGCGTATATATTAGGGATCAGAT	59.454	38.462	0.00	0.00	0.00	2.90
981	1003	3.753797	GCATCCTCTTCTTTTCTTCCGTT	59.246	43.478	0.00	0.00	0.00	4.44
1159	1185	1.902918	TCAATGCCGGTTGCTTGCT	60.903	52.632	1.90	0.00	42.00	3.91
1173	1199	1.580845	GCTGACAGCAAGGCGTCAAT	61.581	55.000	22.62	0.00	41.89	2.57
1175	1201	2.666190	GCTGACAGCAAGGCGTCA	60.666	61.111	22.62	12.61	41.89	4.35
1186	1212	1.520600	TACTCTTCGGTGCGCTGACA	61.521	55.000	8.67	0.00	0.00	3.58
1260	1320	2.205074	CAGCAATAGGTTAGCGGACTG	58.795	52.381	0.00	0.00	0.00	3.51
1434	1621	2.531428	TGGACCCAGATGTGGCCA	60.531	61.111	0.00	0.00	43.44	5.36
1659	1849	5.235516	GGAAGAGAAACATACGGTGAGAAA	58.764	41.667	0.00	0.00	0.00	2.52
1668	1858	6.424207	AGAGAACAAACGGAAGAGAAACATAC	59.576	38.462	0.00	0.00	0.00	2.39
1712	1905	4.243008	TTCAAGTGGCCGTGGCGA	62.243	61.111	4.53	0.00	43.06	5.54
1791	1984	1.302511	GGCTCTTCTTCCCGCACAA	60.303	57.895	0.00	0.00	0.00	3.33
1999	2198	5.508567	TGGCAAAATCCTTGTCATGAGATA	58.491	37.500	0.00	0.00	0.00	1.98
2014	2213	1.327303	TCGTCAAAGGCTGGCAAAAT	58.673	45.000	3.38	0.00	0.00	1.82
2156	2386	4.365514	TCCTGAAGTGGCAAAGTGATTA	57.634	40.909	0.00	0.00	0.00	1.75
2277	2508	8.002431	AGGAAAGCTAGTCTATCTTAGGGATA	57.998	38.462	0.00	0.00	35.98	2.59
2281	2512	6.263617	ACGAAGGAAAGCTAGTCTATCTTAGG	59.736	42.308	0.00	0.00	0.00	2.69
2305	2536	9.601217	TTCTGTTAATTCAGCTCTAGGAATTAC	57.399	33.333	13.63	10.62	42.51	1.89
2321	2552	4.056050	CCGCTACCGCTATTCTGTTAATT	58.944	43.478	0.00	0.00	0.00	1.40
2322	2553	3.319972	TCCGCTACCGCTATTCTGTTAAT	59.680	43.478	0.00	0.00	0.00	1.40
2323	2554	2.689471	TCCGCTACCGCTATTCTGTTAA	59.311	45.455	0.00	0.00	0.00	2.01
2324	2555	2.033801	GTCCGCTACCGCTATTCTGTTA	59.966	50.000	0.00	0.00	0.00	2.41
2325	2556	1.108776	TCCGCTACCGCTATTCTGTT	58.891	50.000	0.00	0.00	0.00	3.16
2326	2557	0.384669	GTCCGCTACCGCTATTCTGT	59.615	55.000	0.00	0.00	0.00	3.41
2327	2558	0.384309	TGTCCGCTACCGCTATTCTG	59.616	55.000	0.00	0.00	0.00	3.02
2328	2559	0.669077	CTGTCCGCTACCGCTATTCT	59.331	55.000	0.00	0.00	0.00	2.40
2329	2560	0.666913	TCTGTCCGCTACCGCTATTC	59.333	55.000	0.00	0.00	0.00	1.75
2330	2561	0.384669	GTCTGTCCGCTACCGCTATT	59.615	55.000	0.00	0.00	0.00	1.73
2331	2562	0.465824	AGTCTGTCCGCTACCGCTAT	60.466	55.000	0.00	0.00	0.00	2.97
2332	2563	0.178767	TAGTCTGTCCGCTACCGCTA	59.821	55.000	0.00	0.00	0.00	4.26
2333	2564	1.077930	TAGTCTGTCCGCTACCGCT	60.078	57.895	0.00	0.00	0.00	5.52
2334	2565	1.355916	CTAGTCTGTCCGCTACCGC	59.644	63.158	0.00	0.00	0.00	5.68
2335	2566	1.355916	GCTAGTCTGTCCGCTACCG	59.644	63.158	0.00	0.00	0.00	4.02
2336	2567	1.355916	CGCTAGTCTGTCCGCTACC	59.644	63.158	0.00	0.00	0.00	3.18
2337	2568	1.355916	CCGCTAGTCTGTCCGCTAC	59.644	63.158	0.00	0.00	0.00	3.58
2338	2569	1.822613	CCCGCTAGTCTGTCCGCTA	60.823	63.158	0.00	0.00	0.00	4.26
2339	2570	3.141488	CCCGCTAGTCTGTCCGCT	61.141	66.667	0.00	0.00	0.00	5.52
2340	2571	4.874977	GCCCGCTAGTCTGTCCGC	62.875	72.222	0.00	0.00	0.00	5.54
2341	2572	3.127352	GAGCCCGCTAGTCTGTCCG	62.127	68.421	0.00	0.00	0.00	4.79
2342	2573	2.787567	GGAGCCCGCTAGTCTGTCC	61.788	68.421	0.00	0.00	0.00	4.02
2343	2574	2.787567	GGGAGCCCGCTAGTCTGTC	61.788	68.421	0.00	0.00	0.00	3.51
2344	2575	2.760385	GGGAGCCCGCTAGTCTGT	60.760	66.667	0.00	0.00	0.00	3.41
2345	2576	2.443016	AGGGAGCCCGCTAGTCTG	60.443	66.667	0.00	0.00	41.95	3.51
2346	2577	2.123640	GAGGGAGCCCGCTAGTCT	60.124	66.667	1.67	0.00	41.95	3.24
2347	2578	3.228017	GGAGGGAGCCCGCTAGTC	61.228	72.222	9.21	0.00	41.95	2.59
2927	3294	0.114954	AATCAACCTGCCACCACCAT	59.885	50.000	0.00	0.00	0.00	3.55

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.