Multiple sequence alignment - TraesCS5D01G295800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G295800 chr5D 100.000 3521 0 0 1 3521 393740132 393736612 0.000000e+00 6503.0
1 TraesCS5D01G295800 chr5D 90.785 1910 120 17 912 2766 393619554 393617646 0.000000e+00 2501.0
2 TraesCS5D01G295800 chr5D 88.415 1502 170 4 1015 2514 549324008 549325507 0.000000e+00 1807.0
3 TraesCS5D01G295800 chr5D 84.817 876 121 6 1018 1881 549318331 549317456 0.000000e+00 870.0
4 TraesCS5D01G295800 chr5D 93.761 545 32 2 59 602 393739822 393739279 0.000000e+00 817.0
5 TraesCS5D01G295800 chr5D 93.761 545 32 2 311 854 393740074 393739531 0.000000e+00 817.0
6 TraesCS5D01G295800 chr5D 88.158 684 75 6 57 736 393739950 393739269 0.000000e+00 809.0
7 TraesCS5D01G295800 chr5D 88.158 684 75 6 183 864 393740076 393739397 0.000000e+00 809.0
8 TraesCS5D01G295800 chr5D 83.863 409 58 8 3119 3521 393617769 393617363 1.980000e-102 383.0
9 TraesCS5D01G295800 chr5D 90.244 123 11 1 2644 2766 393737014 393736893 3.640000e-35 159.0
10 TraesCS5D01G295800 chr5D 90.244 123 11 1 3119 3240 393737489 393737367 3.640000e-35 159.0
11 TraesCS5D01G295800 chr5D 83.851 161 22 3 2895 3052 451039955 451039796 2.190000e-32 150.0
12 TraesCS5D01G295800 chr5D 84.848 99 11 4 2955 3051 408650387 408650291 2.890000e-16 97.1
13 TraesCS5D01G295800 chr5A 93.521 2732 135 11 14 2708 663335644 663338370 0.000000e+00 4026.0
14 TraesCS5D01G295800 chr5A 92.701 2740 135 18 1 2711 495729798 495727095 0.000000e+00 3892.0
15 TraesCS5D01G295800 chr5A 92.975 2363 129 12 317 2647 495820546 495818189 0.000000e+00 3410.0
16 TraesCS5D01G295800 chr5A 90.249 1887 128 15 923 2754 495397518 495395633 0.000000e+00 2414.0
17 TraesCS5D01G295800 chr5A 89.139 1243 92 9 1 1205 495589115 495587878 0.000000e+00 1507.0
18 TraesCS5D01G295800 chr5A 87.685 674 75 8 60 728 663335826 663336496 0.000000e+00 778.0
19 TraesCS5D01G295800 chr5A 92.125 546 41 2 57 602 495588794 495588251 0.000000e+00 769.0
20 TraesCS5D01G295800 chr5A 87.240 674 80 6 57 728 495588920 495588251 0.000000e+00 763.0
21 TraesCS5D01G295800 chr5A 88.943 615 52 7 1 602 495820614 495820003 0.000000e+00 745.0
22 TraesCS5D01G295800 chr5A 96.198 263 9 1 2449 2711 495586964 495586703 2.510000e-116 429.0
23 TraesCS5D01G295800 chr5A 85.920 348 23 14 2445 2766 495585157 495584810 7.230000e-92 348.0
24 TraesCS5D01G295800 chr5A 80.303 264 46 6 3258 3517 495395423 495395162 9.970000e-46 195.0
25 TraesCS5D01G295800 chr5A 84.768 151 20 2 3119 3268 495395743 495395595 7.870000e-32 148.0
26 TraesCS5D01G295800 chr5A 94.828 58 3 0 3128 3185 495727152 495727095 1.350000e-14 91.6
27 TraesCS5D01G295800 chr5A 96.154 52 2 0 3128 3179 663338316 663338367 6.260000e-13 86.1
28 TraesCS5D01G295800 chr5B 93.585 2619 116 14 920 3520 473610438 473607854 0.000000e+00 3858.0
29 TraesCS5D01G295800 chr5B 90.594 1903 125 16 918 2766 473520254 473518352 0.000000e+00 2473.0
30 TraesCS5D01G295800 chr5B 87.558 1511 169 11 1011 2513 701003451 701001952 0.000000e+00 1731.0
31 TraesCS5D01G295800 chr5B 87.785 483 59 0 2030 2512 700936907 700936425 1.830000e-157 566.0
32 TraesCS5D01G295800 chr5B 89.286 168 16 2 3119 3284 473518475 473518308 3.560000e-50 209.0
33 TraesCS5D01G295800 chr5B 87.805 123 14 1 3119 3240 473608704 473608582 3.660000e-30 143.0
34 TraesCS5D01G295800 chr5B 97.222 36 0 1 1 35 547331175 547331210 3.800000e-05 60.2
35 TraesCS5D01G295800 chr7B 87.684 1291 144 9 1228 2507 559561841 559563127 0.000000e+00 1489.0
36 TraesCS5D01G295800 chr7B 81.529 157 25 4 2897 3051 653985763 653985609 3.690000e-25 126.0
37 TraesCS5D01G295800 chr4A 83.787 1505 217 16 1035 2512 620934088 620932584 0.000000e+00 1402.0
38 TraesCS5D01G295800 chrUn 82.716 162 24 4 3349 3508 126687100 126686941 1.320000e-29 141.0
39 TraesCS5D01G295800 chr4B 83.803 142 17 5 2878 3015 616278979 616279118 2.850000e-26 130.0
40 TraesCS5D01G295800 chr2B 83.333 132 19 3 2920 3050 171109978 171110107 6.170000e-23 119.0
41 TraesCS5D01G295800 chr2B 78.322 143 22 8 2913 3051 504325481 504325618 2.250000e-12 84.2
42 TraesCS5D01G295800 chr1D 77.720 193 38 5 2915 3105 377030399 377030588 2.870000e-21 113.0
43 TraesCS5D01G295800 chr1D 84.946 93 8 4 2897 2985 424909864 424909774 4.840000e-14 89.8
44 TraesCS5D01G295800 chr3A 78.571 168 30 5 2921 3086 696279843 696279680 4.810000e-19 106.0
45 TraesCS5D01G295800 chr6D 76.271 177 33 8 3313 3484 451164361 451164189 6.260000e-13 86.1
46 TraesCS5D01G295800 chr6B 73.936 188 44 5 3300 3484 591083020 591082835 1.750000e-08 71.3
47 TraesCS5D01G295800 chr3B 84.058 69 9 2 3352 3419 117724685 117724752 8.160000e-07 65.8
48 TraesCS5D01G295800 chr1A 97.222 36 0 1 1 35 262015902 262015937 3.800000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G295800 chr5D 393736612 393740132 3520 True 1439.000000 6503 92.046571 1 3521 7 chr5D.!!$R5 3520
1 TraesCS5D01G295800 chr5D 549324008 549325507 1499 False 1807.000000 1807 88.415000 1015 2514 1 chr5D.!!$F1 1499
2 TraesCS5D01G295800 chr5D 393617363 393619554 2191 True 1442.000000 2501 87.324000 912 3521 2 chr5D.!!$R4 2609
3 TraesCS5D01G295800 chr5D 549317456 549318331 875 True 870.000000 870 84.817000 1018 1881 1 chr5D.!!$R3 863
4 TraesCS5D01G295800 chr5A 495818189 495820614 2425 True 2077.500000 3410 90.959000 1 2647 2 chr5A.!!$R4 2646
5 TraesCS5D01G295800 chr5A 495727095 495729798 2703 True 1991.800000 3892 93.764500 1 3185 2 chr5A.!!$R3 3184
6 TraesCS5D01G295800 chr5A 663335644 663338370 2726 False 1630.033333 4026 92.453333 14 3179 3 chr5A.!!$F1 3165
7 TraesCS5D01G295800 chr5A 495395162 495397518 2356 True 919.000000 2414 85.106667 923 3517 3 chr5A.!!$R1 2594
8 TraesCS5D01G295800 chr5A 495584810 495589115 4305 True 763.200000 1507 90.124400 1 2766 5 chr5A.!!$R2 2765
9 TraesCS5D01G295800 chr5B 473607854 473610438 2584 True 2000.500000 3858 90.695000 920 3520 2 chr5B.!!$R4 2600
10 TraesCS5D01G295800 chr5B 701001952 701003451 1499 True 1731.000000 1731 87.558000 1011 2513 1 chr5B.!!$R2 1502
11 TraesCS5D01G295800 chr5B 473518308 473520254 1946 True 1341.000000 2473 89.940000 918 3284 2 chr5B.!!$R3 2366
12 TraesCS5D01G295800 chr7B 559561841 559563127 1286 False 1489.000000 1489 87.684000 1228 2507 1 chr7B.!!$F1 1279
13 TraesCS5D01G295800 chr4A 620932584 620934088 1504 True 1402.000000 1402 83.787000 1035 2512 1 chr4A.!!$R1 1477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 886 0.104356 TCTCCACCCCCAACCTGTTA 60.104 55.0 0.00 0.0 0.00 2.41 F
870 1150 0.325577 CCCTCCCAATTTTCAGGGGG 60.326 60.0 4.87 0.0 45.73 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2403 3.665190 GGTCTCTTTGACGACCATCTTT 58.335 45.455 3.72 0.0 46.98 2.52 R
2818 5048 0.740868 CTGAGATCGAGGGCGCAAAA 60.741 55.000 10.83 0.0 37.46 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.870588 CCAATTTTTGGCATTAAACCAATTG 57.129 32.000 12.62 13.11 46.25 2.32
47 48 4.337264 AAACCAATTGGCCTCCTAATCT 57.663 40.909 24.79 0.00 39.32 2.40
104 124 1.490910 CTAATCTCCACCCCCAACCTC 59.509 57.143 0.00 0.00 0.00 3.85
129 149 3.184178 GTGTGATTGGCAACGAAAATTGG 59.816 43.478 0.00 0.00 42.51 3.16
161 181 6.375455 ACCAATCTCTAGCCAACATTTAACAG 59.625 38.462 0.00 0.00 0.00 3.16
175 195 7.856145 ACATTTAACAGTTGCCAAAATTTGA 57.144 28.000 7.37 0.00 0.00 2.69
177 197 5.957910 TTAACAGTTGCCAAAATTTGACG 57.042 34.783 7.37 0.00 0.00 4.35
181 201 1.260297 GTTGCCAAAATTTGACGTGCC 59.740 47.619 7.37 0.00 0.00 5.01
188 208 5.576895 CCAAAATTTGACGTGCCAATTTTT 58.423 33.333 7.37 13.69 38.78 1.94
217 237 6.357367 TCAAACCAATTAGCCTCCTAATCTC 58.643 40.000 0.00 0.00 42.09 2.75
218 238 6.158695 TCAAACCAATTAGCCTCCTAATCTCT 59.841 38.462 0.00 0.00 42.09 3.10
222 242 5.544176 CCAATTAGCCTCCTAATCTCTACCA 59.456 44.000 0.00 0.00 42.09 3.25
224 244 2.965562 AGCCTCCTAATCTCTACCACC 58.034 52.381 0.00 0.00 0.00 4.61
227 247 3.648545 GCCTCCTAATCTCTACCACCAAT 59.351 47.826 0.00 0.00 0.00 3.16
259 533 6.071896 TGTGATTGGCAACGAAAATTGGTATA 60.072 34.615 0.00 0.00 42.51 1.47
287 561 6.719370 ACCATTCTCTAGCCAACATTTAACAA 59.281 34.615 0.00 0.00 0.00 2.83
309 583 2.469058 CCAAAATTTGGCATGCCGG 58.531 52.632 30.87 19.95 45.17 6.13
332 606 6.859420 GTTTTTGGCATCAAACCAATTAGT 57.141 33.333 10.33 0.00 46.25 2.24
353 627 2.021042 TCTCCTAATCTCCACCCCCAAT 60.021 50.000 0.00 0.00 0.00 3.16
359 633 2.352561 TCTCCACCCCCAATCTGTTA 57.647 50.000 0.00 0.00 0.00 2.41
379 653 6.219473 TGTTATGTGATTGGCAACGAAAATT 58.781 32.000 0.00 0.00 42.51 1.82
381 655 3.388308 TGTGATTGGCAACGAAAATTGG 58.612 40.909 0.00 0.00 42.51 3.16
410 684 6.350110 GCAACCAATCTCTAGCCAACATTTAA 60.350 38.462 0.00 0.00 0.00 1.52
458 732 5.938438 TTTTTGGCATCAAACCAATTAGC 57.062 34.783 0.00 0.00 46.25 3.09
476 750 2.909217 AGCATCCTAATCTCTACCCCC 58.091 52.381 0.00 0.00 0.00 5.40
481 755 5.458215 GCATCCTAATCTCTACCCCCAATTT 60.458 44.000 0.00 0.00 0.00 1.82
540 814 9.886132 ACGAATCTCTAACCAACATTTAATAGT 57.114 29.630 0.00 0.00 0.00 2.12
555 829 9.553064 ACATTTAATAGTTGTCAAAATTTGGCA 57.447 25.926 9.14 9.14 44.76 4.92
559 833 4.816786 AGTTGTCAAAATTTGGCATTGC 57.183 36.364 14.09 7.71 45.87 3.56
560 834 3.565063 AGTTGTCAAAATTTGGCATTGCC 59.435 39.130 21.12 21.12 45.87 4.52
575 849 5.359716 GCATTGCCAATTTTTGACATGAA 57.640 34.783 0.00 0.00 0.00 2.57
576 850 5.759963 GCATTGCCAATTTTTGACATGAAA 58.240 33.333 0.00 0.00 0.00 2.69
577 851 5.626132 GCATTGCCAATTTTTGACATGAAAC 59.374 36.000 0.00 0.00 0.00 2.78
578 852 5.747951 TTGCCAATTTTTGACATGAAACC 57.252 34.783 0.00 0.00 0.00 3.27
579 853 4.774124 TGCCAATTTTTGACATGAAACCA 58.226 34.783 0.00 0.00 0.00 3.67
580 854 5.188434 TGCCAATTTTTGACATGAAACCAA 58.812 33.333 0.00 0.00 0.00 3.67
581 855 5.826737 TGCCAATTTTTGACATGAAACCAAT 59.173 32.000 0.00 0.00 0.00 3.16
582 856 6.320672 TGCCAATTTTTGACATGAAACCAATT 59.679 30.769 0.00 0.00 0.00 2.32
583 857 7.500227 TGCCAATTTTTGACATGAAACCAATTA 59.500 29.630 0.00 0.00 0.00 1.40
584 858 8.016801 GCCAATTTTTGACATGAAACCAATTAG 58.983 33.333 0.00 0.00 0.00 1.73
585 859 8.016801 CCAATTTTTGACATGAAACCAATTAGC 58.983 33.333 0.00 0.00 0.00 3.09
586 860 8.776470 CAATTTTTGACATGAAACCAATTAGCT 58.224 29.630 0.00 0.00 0.00 3.32
587 861 8.907222 ATTTTTGACATGAAACCAATTAGCTT 57.093 26.923 0.00 0.00 0.00 3.74
588 862 7.945033 TTTTGACATGAAACCAATTAGCTTC 57.055 32.000 0.00 0.00 0.00 3.86
589 863 5.643379 TGACATGAAACCAATTAGCTTCC 57.357 39.130 0.00 0.00 0.00 3.46
590 864 5.324409 TGACATGAAACCAATTAGCTTCCT 58.676 37.500 0.00 0.00 0.00 3.36
591 865 6.480763 TGACATGAAACCAATTAGCTTCCTA 58.519 36.000 0.00 0.00 0.00 2.94
592 866 6.945435 TGACATGAAACCAATTAGCTTCCTAA 59.055 34.615 0.00 0.00 37.90 2.69
593 867 7.615365 TGACATGAAACCAATTAGCTTCCTAAT 59.385 33.333 0.00 0.00 44.19 1.73
594 868 8.000780 ACATGAAACCAATTAGCTTCCTAATC 57.999 34.615 0.00 0.00 42.09 1.75
595 869 7.836183 ACATGAAACCAATTAGCTTCCTAATCT 59.164 33.333 0.00 0.00 42.09 2.40
596 870 7.865706 TGAAACCAATTAGCTTCCTAATCTC 57.134 36.000 0.00 0.00 42.09 2.75
597 871 6.828785 TGAAACCAATTAGCTTCCTAATCTCC 59.171 38.462 0.00 0.00 42.09 3.71
598 872 5.975988 ACCAATTAGCTTCCTAATCTCCA 57.024 39.130 0.00 0.00 42.09 3.86
612 886 0.104356 TCTCCACCCCCAACCTGTTA 60.104 55.000 0.00 0.00 0.00 2.41
621 895 2.760092 CCCCAACCTGTTATGTGATTGG 59.240 50.000 0.00 0.00 37.03 3.16
632 906 6.219473 TGTTATGTGATTGGCAACGAAAATT 58.781 32.000 0.00 0.00 42.51 1.82
680 954 7.856145 ACATTTAACAGTTGCCAAAATTTGA 57.144 28.000 7.37 0.00 0.00 2.69
681 955 8.449251 ACATTTAACAGTTGCCAAAATTTGAT 57.551 26.923 7.37 0.00 0.00 2.57
723 997 6.772716 TCAAACCAATTAGCATCCTAATCTCC 59.227 38.462 0.00 0.00 42.09 3.71
729 1003 0.402121 GCATCCTAATCTCCACCCCC 59.598 60.000 0.00 0.00 0.00 5.40
733 1008 2.871796 TCCTAATCTCCACCCCCATTT 58.128 47.619 0.00 0.00 0.00 2.32
789 1064 7.681939 AACGAATCTCTAGCCAACATTTAAA 57.318 32.000 0.00 0.00 0.00 1.52
857 1132 2.050918 CTTCCTAATCTCCACCCTCCC 58.949 57.143 0.00 0.00 0.00 4.30
858 1133 1.023719 TCCTAATCTCCACCCTCCCA 58.976 55.000 0.00 0.00 0.00 4.37
859 1134 1.368203 TCCTAATCTCCACCCTCCCAA 59.632 52.381 0.00 0.00 0.00 4.12
860 1135 2.021042 TCCTAATCTCCACCCTCCCAAT 60.021 50.000 0.00 0.00 0.00 3.16
861 1136 2.785857 CCTAATCTCCACCCTCCCAATT 59.214 50.000 0.00 0.00 0.00 2.32
862 1137 3.205282 CCTAATCTCCACCCTCCCAATTT 59.795 47.826 0.00 0.00 0.00 1.82
864 1139 2.899303 TCTCCACCCTCCCAATTTTC 57.101 50.000 0.00 0.00 0.00 2.29
865 1140 2.069775 TCTCCACCCTCCCAATTTTCA 58.930 47.619 0.00 0.00 0.00 2.69
870 1150 0.325577 CCCTCCCAATTTTCAGGGGG 60.326 60.000 4.87 0.00 45.73 5.40
915 1209 1.885887 TCCAATCAAAAGGTCCTTGCG 59.114 47.619 4.45 0.00 0.00 4.85
939 1233 2.093553 TCACTTTATAAACCCCCGACGG 60.094 50.000 6.99 6.99 0.00 4.79
942 1236 1.981951 TTATAAACCCCCGACGGCCC 61.982 60.000 8.86 0.00 0.00 5.80
1028 1338 1.854280 CTCACTACCCCTCCTCCTAGT 59.146 57.143 0.00 0.00 0.00 2.57
2061 2403 0.323999 TGCCGAAGCTGACCTACCTA 60.324 55.000 0.00 0.00 40.80 3.08
2754 4984 6.018669 GGGACTATGATTGATTCGAAACAGAC 60.019 42.308 8.19 7.41 0.00 3.51
2780 5010 6.824305 AAAAAGAATGGGACTGACTATGTG 57.176 37.500 0.00 0.00 0.00 3.21
2781 5011 5.505181 AAAGAATGGGACTGACTATGTGT 57.495 39.130 0.00 0.00 0.00 3.72
2782 5012 4.744795 AGAATGGGACTGACTATGTGTC 57.255 45.455 0.00 0.00 45.54 3.67
2797 5027 7.865706 ACTATGTGTCAGTCCATTTAAATCC 57.134 36.000 0.00 0.00 0.00 3.01
2798 5028 6.828785 ACTATGTGTCAGTCCATTTAAATCCC 59.171 38.462 0.00 0.00 0.00 3.85
2799 5029 4.991776 TGTGTCAGTCCATTTAAATCCCA 58.008 39.130 0.00 0.00 0.00 4.37
2800 5030 5.389520 TGTGTCAGTCCATTTAAATCCCAA 58.610 37.500 0.00 0.00 0.00 4.12
2801 5031 6.015918 TGTGTCAGTCCATTTAAATCCCAAT 58.984 36.000 0.00 0.00 0.00 3.16
2802 5032 6.496565 TGTGTCAGTCCATTTAAATCCCAATT 59.503 34.615 0.00 0.00 0.00 2.32
2803 5033 7.016072 TGTGTCAGTCCATTTAAATCCCAATTT 59.984 33.333 0.00 0.00 38.61 1.82
2804 5034 7.331687 GTGTCAGTCCATTTAAATCCCAATTTG 59.668 37.037 0.00 0.00 35.84 2.32
2805 5035 6.818142 GTCAGTCCATTTAAATCCCAATTTGG 59.182 38.462 8.56 8.56 35.84 3.28
2806 5036 6.728164 TCAGTCCATTTAAATCCCAATTTGGA 59.272 34.615 17.24 0.00 40.96 3.53
2808 5038 7.712205 CAGTCCATTTAAATCCCAATTTGGATC 59.288 37.037 17.24 0.00 44.49 3.36
2809 5039 7.402650 AGTCCATTTAAATCCCAATTTGGATCA 59.597 33.333 17.24 0.82 44.49 2.92
2810 5040 7.712205 GTCCATTTAAATCCCAATTTGGATCAG 59.288 37.037 17.24 0.04 44.49 2.90
2811 5041 7.402650 TCCATTTAAATCCCAATTTGGATCAGT 59.597 33.333 17.24 3.67 44.49 3.41
2812 5042 7.712205 CCATTTAAATCCCAATTTGGATCAGTC 59.288 37.037 17.24 0.00 44.49 3.51
2813 5043 7.789202 TTTAAATCCCAATTTGGATCAGTCA 57.211 32.000 17.24 0.00 44.49 3.41
2814 5044 7.789202 TTAAATCCCAATTTGGATCAGTCAA 57.211 32.000 17.24 0.37 44.49 3.18
2815 5045 6.879367 AAATCCCAATTTGGATCAGTCAAT 57.121 33.333 17.24 0.00 44.49 2.57
2816 5046 6.475596 AATCCCAATTTGGATCAGTCAATC 57.524 37.500 17.24 0.00 44.49 2.67
2817 5047 3.947196 TCCCAATTTGGATCAGTCAATCG 59.053 43.478 17.24 0.00 40.96 3.34
2818 5048 3.696051 CCCAATTTGGATCAGTCAATCGT 59.304 43.478 17.24 0.00 40.96 3.73
2819 5049 4.158394 CCCAATTTGGATCAGTCAATCGTT 59.842 41.667 17.24 0.00 40.96 3.85
2820 5050 5.336690 CCCAATTTGGATCAGTCAATCGTTT 60.337 40.000 17.24 0.00 40.96 3.60
2821 5051 6.158598 CCAATTTGGATCAGTCAATCGTTTT 58.841 36.000 10.03 0.00 40.96 2.43
2822 5052 6.089820 CCAATTTGGATCAGTCAATCGTTTTG 59.910 38.462 10.03 0.00 40.96 2.44
2823 5053 3.829886 TGGATCAGTCAATCGTTTTGC 57.170 42.857 0.00 0.00 0.00 3.68
2824 5054 2.159430 TGGATCAGTCAATCGTTTTGCG 59.841 45.455 0.00 0.00 43.01 4.85
2825 5055 2.169179 GATCAGTCAATCGTTTTGCGC 58.831 47.619 0.00 0.00 41.07 6.09
2826 5056 0.237235 TCAGTCAATCGTTTTGCGCC 59.763 50.000 4.18 0.00 41.07 6.53
2827 5057 0.729140 CAGTCAATCGTTTTGCGCCC 60.729 55.000 4.18 0.00 41.07 6.13
2828 5058 0.889186 AGTCAATCGTTTTGCGCCCT 60.889 50.000 4.18 0.00 41.07 5.19
2829 5059 0.454452 GTCAATCGTTTTGCGCCCTC 60.454 55.000 4.18 0.00 41.07 4.30
2830 5060 1.511887 CAATCGTTTTGCGCCCTCG 60.512 57.895 4.18 4.91 41.07 4.63
2831 5061 1.669760 AATCGTTTTGCGCCCTCGA 60.670 52.632 4.18 10.70 41.07 4.04
2832 5062 1.024579 AATCGTTTTGCGCCCTCGAT 61.025 50.000 16.60 16.60 41.82 3.59
2833 5063 1.429148 ATCGTTTTGCGCCCTCGATC 61.429 55.000 16.60 0.00 41.07 3.69
2834 5064 2.100631 CGTTTTGCGCCCTCGATCT 61.101 57.895 4.18 0.00 38.10 2.75
2835 5065 1.716172 GTTTTGCGCCCTCGATCTC 59.284 57.895 4.18 0.00 38.10 2.75
2836 5066 1.019278 GTTTTGCGCCCTCGATCTCA 61.019 55.000 4.18 0.00 38.10 3.27
2837 5067 0.740868 TTTTGCGCCCTCGATCTCAG 60.741 55.000 4.18 0.00 38.10 3.35
2838 5068 1.604147 TTTGCGCCCTCGATCTCAGA 61.604 55.000 4.18 0.00 38.10 3.27
2839 5069 1.395045 TTGCGCCCTCGATCTCAGAT 61.395 55.000 4.18 0.00 38.10 2.90
2840 5070 1.080839 GCGCCCTCGATCTCAGATC 60.081 63.158 4.35 4.35 38.10 2.75
2841 5071 1.523154 GCGCCCTCGATCTCAGATCT 61.523 60.000 12.98 0.00 38.10 2.75
2842 5072 1.814793 CGCCCTCGATCTCAGATCTA 58.185 55.000 12.98 0.64 38.10 1.98
2843 5073 2.155279 CGCCCTCGATCTCAGATCTAA 58.845 52.381 12.98 0.13 38.10 2.10
2844 5074 2.095466 CGCCCTCGATCTCAGATCTAAC 60.095 54.545 12.98 0.00 38.10 2.34
2845 5075 2.095466 GCCCTCGATCTCAGATCTAACG 60.095 54.545 12.98 0.05 0.00 3.18
2846 5076 2.486203 CCCTCGATCTCAGATCTAACGG 59.514 54.545 12.98 7.15 0.00 4.44
2847 5077 2.095466 CCTCGATCTCAGATCTAACGGC 60.095 54.545 12.98 0.00 0.00 5.68
2848 5078 2.811431 CTCGATCTCAGATCTAACGGCT 59.189 50.000 12.98 0.00 0.00 5.52
2849 5079 2.809119 TCGATCTCAGATCTAACGGCTC 59.191 50.000 12.98 0.00 0.00 4.70
2850 5080 2.095466 CGATCTCAGATCTAACGGCTCC 60.095 54.545 12.98 0.00 0.00 4.70
2851 5081 2.738587 TCTCAGATCTAACGGCTCCT 57.261 50.000 0.00 0.00 0.00 3.69
2852 5082 3.859061 TCTCAGATCTAACGGCTCCTA 57.141 47.619 0.00 0.00 0.00 2.94
2853 5083 4.166246 TCTCAGATCTAACGGCTCCTAA 57.834 45.455 0.00 0.00 0.00 2.69
2854 5084 4.138290 TCTCAGATCTAACGGCTCCTAAG 58.862 47.826 0.00 0.00 0.00 2.18
2855 5085 3.886505 CTCAGATCTAACGGCTCCTAAGT 59.113 47.826 0.00 0.00 0.00 2.24
2856 5086 3.884091 TCAGATCTAACGGCTCCTAAGTC 59.116 47.826 0.00 0.00 0.00 3.01
2857 5087 3.632604 CAGATCTAACGGCTCCTAAGTCA 59.367 47.826 0.00 0.00 0.00 3.41
2858 5088 4.279671 CAGATCTAACGGCTCCTAAGTCAT 59.720 45.833 0.00 0.00 0.00 3.06
2859 5089 4.896482 AGATCTAACGGCTCCTAAGTCATT 59.104 41.667 0.00 0.00 0.00 2.57
2860 5090 5.364157 AGATCTAACGGCTCCTAAGTCATTT 59.636 40.000 0.00 0.00 0.00 2.32
2861 5091 5.007385 TCTAACGGCTCCTAAGTCATTTC 57.993 43.478 0.00 0.00 0.00 2.17
2862 5092 2.693267 ACGGCTCCTAAGTCATTTCC 57.307 50.000 0.00 0.00 0.00 3.13
2863 5093 1.209747 ACGGCTCCTAAGTCATTTCCC 59.790 52.381 0.00 0.00 0.00 3.97
2864 5094 1.209504 CGGCTCCTAAGTCATTTCCCA 59.790 52.381 0.00 0.00 0.00 4.37
2865 5095 2.644676 GGCTCCTAAGTCATTTCCCAC 58.355 52.381 0.00 0.00 0.00 4.61
2866 5096 2.644676 GCTCCTAAGTCATTTCCCACC 58.355 52.381 0.00 0.00 0.00 4.61
2867 5097 2.239907 GCTCCTAAGTCATTTCCCACCT 59.760 50.000 0.00 0.00 0.00 4.00
2868 5098 3.682999 GCTCCTAAGTCATTTCCCACCTC 60.683 52.174 0.00 0.00 0.00 3.85
2869 5099 2.844348 TCCTAAGTCATTTCCCACCTCC 59.156 50.000 0.00 0.00 0.00 4.30
2870 5100 2.092375 CCTAAGTCATTTCCCACCTCCC 60.092 54.545 0.00 0.00 0.00 4.30
2871 5101 1.455822 AAGTCATTTCCCACCTCCCA 58.544 50.000 0.00 0.00 0.00 4.37
2872 5102 1.455822 AGTCATTTCCCACCTCCCAA 58.544 50.000 0.00 0.00 0.00 4.12
2873 5103 2.003072 AGTCATTTCCCACCTCCCAAT 58.997 47.619 0.00 0.00 0.00 3.16
2874 5104 2.102578 GTCATTTCCCACCTCCCAATG 58.897 52.381 0.00 0.00 0.00 2.82
2875 5105 1.715931 TCATTTCCCACCTCCCAATGT 59.284 47.619 0.00 0.00 0.00 2.71
2876 5106 2.111613 TCATTTCCCACCTCCCAATGTT 59.888 45.455 0.00 0.00 0.00 2.71
2877 5107 2.785357 TTTCCCACCTCCCAATGTTT 57.215 45.000 0.00 0.00 0.00 2.83
2878 5108 2.785357 TTCCCACCTCCCAATGTTTT 57.215 45.000 0.00 0.00 0.00 2.43
2879 5109 2.302587 TCCCACCTCCCAATGTTTTC 57.697 50.000 0.00 0.00 0.00 2.29
2880 5110 1.786441 TCCCACCTCCCAATGTTTTCT 59.214 47.619 0.00 0.00 0.00 2.52
2881 5111 2.178984 TCCCACCTCCCAATGTTTTCTT 59.821 45.455 0.00 0.00 0.00 2.52
2882 5112 2.562738 CCCACCTCCCAATGTTTTCTTC 59.437 50.000 0.00 0.00 0.00 2.87
2883 5113 2.562738 CCACCTCCCAATGTTTTCTTCC 59.437 50.000 0.00 0.00 0.00 3.46
2884 5114 3.500343 CACCTCCCAATGTTTTCTTCCT 58.500 45.455 0.00 0.00 0.00 3.36
2885 5115 3.507622 CACCTCCCAATGTTTTCTTCCTC 59.492 47.826 0.00 0.00 0.00 3.71
2886 5116 3.092301 CCTCCCAATGTTTTCTTCCTCC 58.908 50.000 0.00 0.00 0.00 4.30
2887 5117 3.245407 CCTCCCAATGTTTTCTTCCTCCT 60.245 47.826 0.00 0.00 0.00 3.69
2888 5118 3.760684 CTCCCAATGTTTTCTTCCTCCTG 59.239 47.826 0.00 0.00 0.00 3.86
2889 5119 3.397618 TCCCAATGTTTTCTTCCTCCTGA 59.602 43.478 0.00 0.00 0.00 3.86
2890 5120 3.507622 CCCAATGTTTTCTTCCTCCTGAC 59.492 47.826 0.00 0.00 0.00 3.51
2891 5121 3.189287 CCAATGTTTTCTTCCTCCTGACG 59.811 47.826 0.00 0.00 0.00 4.35
2892 5122 1.878953 TGTTTTCTTCCTCCTGACGC 58.121 50.000 0.00 0.00 0.00 5.19
2893 5123 1.140052 TGTTTTCTTCCTCCTGACGCA 59.860 47.619 0.00 0.00 0.00 5.24
2894 5124 1.531578 GTTTTCTTCCTCCTGACGCAC 59.468 52.381 0.00 0.00 0.00 5.34
2895 5125 0.756294 TTTCTTCCTCCTGACGCACA 59.244 50.000 0.00 0.00 0.00 4.57
2896 5126 0.976641 TTCTTCCTCCTGACGCACAT 59.023 50.000 0.00 0.00 0.00 3.21
2897 5127 0.532573 TCTTCCTCCTGACGCACATC 59.467 55.000 0.00 0.00 0.00 3.06
2898 5128 0.534412 CTTCCTCCTGACGCACATCT 59.466 55.000 0.00 0.00 0.00 2.90
2899 5129 0.976641 TTCCTCCTGACGCACATCTT 59.023 50.000 0.00 0.00 0.00 2.40
2900 5130 0.532573 TCCTCCTGACGCACATCTTC 59.467 55.000 0.00 0.00 0.00 2.87
2901 5131 0.534412 CCTCCTGACGCACATCTTCT 59.466 55.000 0.00 0.00 0.00 2.85
2902 5132 1.066573 CCTCCTGACGCACATCTTCTT 60.067 52.381 0.00 0.00 0.00 2.52
2903 5133 2.266554 CTCCTGACGCACATCTTCTTC 58.733 52.381 0.00 0.00 0.00 2.87
2904 5134 1.066858 TCCTGACGCACATCTTCTTCC 60.067 52.381 0.00 0.00 0.00 3.46
2905 5135 1.338105 CCTGACGCACATCTTCTTCCA 60.338 52.381 0.00 0.00 0.00 3.53
2906 5136 2.416747 CTGACGCACATCTTCTTCCAA 58.583 47.619 0.00 0.00 0.00 3.53
2907 5137 2.143122 TGACGCACATCTTCTTCCAAC 58.857 47.619 0.00 0.00 0.00 3.77
2908 5138 1.464997 GACGCACATCTTCTTCCAACC 59.535 52.381 0.00 0.00 0.00 3.77
2909 5139 1.202758 ACGCACATCTTCTTCCAACCA 60.203 47.619 0.00 0.00 0.00 3.67
2910 5140 2.086869 CGCACATCTTCTTCCAACCAT 58.913 47.619 0.00 0.00 0.00 3.55
2911 5141 2.096496 CGCACATCTTCTTCCAACCATC 59.904 50.000 0.00 0.00 0.00 3.51
2912 5142 2.424956 GCACATCTTCTTCCAACCATCC 59.575 50.000 0.00 0.00 0.00 3.51
2913 5143 3.019564 CACATCTTCTTCCAACCATCCC 58.980 50.000 0.00 0.00 0.00 3.85
2914 5144 2.024941 ACATCTTCTTCCAACCATCCCC 60.025 50.000 0.00 0.00 0.00 4.81
2915 5145 1.753903 TCTTCTTCCAACCATCCCCA 58.246 50.000 0.00 0.00 0.00 4.96
2916 5146 1.354368 TCTTCTTCCAACCATCCCCAC 59.646 52.381 0.00 0.00 0.00 4.61
2917 5147 0.037590 TTCTTCCAACCATCCCCACG 59.962 55.000 0.00 0.00 0.00 4.94
2918 5148 1.378514 CTTCCAACCATCCCCACGG 60.379 63.158 0.00 0.00 0.00 4.94
2919 5149 1.847798 CTTCCAACCATCCCCACGGA 61.848 60.000 0.00 0.00 44.33 4.69
2920 5150 2.045340 CCAACCATCCCCACGGAC 60.045 66.667 0.00 0.00 42.48 4.79
2921 5151 2.045340 CAACCATCCCCACGGACC 60.045 66.667 0.00 0.00 42.48 4.46
2922 5152 2.530661 AACCATCCCCACGGACCA 60.531 61.111 0.00 0.00 42.48 4.02
2923 5153 2.902457 AACCATCCCCACGGACCAC 61.902 63.158 0.00 0.00 42.48 4.16
2924 5154 4.109675 CCATCCCCACGGACCACC 62.110 72.222 0.00 0.00 42.48 4.61
3003 5233 4.468689 CGCCCTCCCCGAAACCTC 62.469 72.222 0.00 0.00 0.00 3.85
3004 5234 4.111053 GCCCTCCCCGAAACCTCC 62.111 72.222 0.00 0.00 0.00 4.30
3005 5235 2.285442 CCCTCCCCGAAACCTCCT 60.285 66.667 0.00 0.00 0.00 3.69
3006 5236 2.368011 CCCTCCCCGAAACCTCCTC 61.368 68.421 0.00 0.00 0.00 3.71
3007 5237 2.368011 CCTCCCCGAAACCTCCTCC 61.368 68.421 0.00 0.00 0.00 4.30
3008 5238 2.285144 TCCCCGAAACCTCCTCCC 60.285 66.667 0.00 0.00 0.00 4.30
3009 5239 2.609610 CCCCGAAACCTCCTCCCA 60.610 66.667 0.00 0.00 0.00 4.37
3010 5240 2.669240 CCCGAAACCTCCTCCCAC 59.331 66.667 0.00 0.00 0.00 4.61
3011 5241 2.669240 CCGAAACCTCCTCCCACC 59.331 66.667 0.00 0.00 0.00 4.61
3012 5242 2.264794 CGAAACCTCCTCCCACCG 59.735 66.667 0.00 0.00 0.00 4.94
3013 5243 2.580601 CGAAACCTCCTCCCACCGT 61.581 63.158 0.00 0.00 0.00 4.83
3014 5244 1.295746 GAAACCTCCTCCCACCGTC 59.704 63.158 0.00 0.00 0.00 4.79
3015 5245 2.502692 GAAACCTCCTCCCACCGTCG 62.503 65.000 0.00 0.00 0.00 5.12
3016 5246 3.822636 AACCTCCTCCCACCGTCGT 62.823 63.158 0.00 0.00 0.00 4.34
3017 5247 3.760035 CCTCCTCCCACCGTCGTG 61.760 72.222 0.00 0.00 39.91 4.35
3018 5248 4.436998 CTCCTCCCACCGTCGTGC 62.437 72.222 0.00 0.00 38.79 5.34
3019 5249 4.988716 TCCTCCCACCGTCGTGCT 62.989 66.667 0.00 0.00 38.79 4.40
3020 5250 3.066190 CCTCCCACCGTCGTGCTA 61.066 66.667 0.00 0.00 38.79 3.49
3021 5251 2.181021 CTCCCACCGTCGTGCTAC 59.819 66.667 0.00 0.00 38.79 3.58
3022 5252 3.352338 CTCCCACCGTCGTGCTACC 62.352 68.421 0.00 0.00 38.79 3.18
3023 5253 4.789075 CCCACCGTCGTGCTACCG 62.789 72.222 0.00 0.00 38.79 4.02
3024 5254 3.740397 CCACCGTCGTGCTACCGA 61.740 66.667 0.00 0.00 38.79 4.69
3030 5260 2.753043 TCGTGCTACCGACTCCCC 60.753 66.667 0.00 0.00 30.63 4.81
3031 5261 3.834799 CGTGCTACCGACTCCCCC 61.835 72.222 0.00 0.00 0.00 5.40
3032 5262 3.834799 GTGCTACCGACTCCCCCG 61.835 72.222 0.00 0.00 0.00 5.73
3033 5263 4.051167 TGCTACCGACTCCCCCGA 62.051 66.667 0.00 0.00 0.00 5.14
3034 5264 2.521224 GCTACCGACTCCCCCGAT 60.521 66.667 0.00 0.00 0.00 4.18
3035 5265 2.562876 GCTACCGACTCCCCCGATC 61.563 68.421 0.00 0.00 0.00 3.69
3036 5266 1.152819 CTACCGACTCCCCCGATCA 60.153 63.158 0.00 0.00 0.00 2.92
3037 5267 0.539901 CTACCGACTCCCCCGATCAT 60.540 60.000 0.00 0.00 0.00 2.45
3038 5268 0.538977 TACCGACTCCCCCGATCATC 60.539 60.000 0.00 0.00 0.00 2.92
3039 5269 2.574955 CCGACTCCCCCGATCATCC 61.575 68.421 0.00 0.00 0.00 3.51
3040 5270 2.574955 CGACTCCCCCGATCATCCC 61.575 68.421 0.00 0.00 0.00 3.85
3041 5271 1.152226 GACTCCCCCGATCATCCCT 60.152 63.158 0.00 0.00 0.00 4.20
3042 5272 1.152226 ACTCCCCCGATCATCCCTC 60.152 63.158 0.00 0.00 0.00 4.30
3043 5273 1.157276 CTCCCCCGATCATCCCTCT 59.843 63.158 0.00 0.00 0.00 3.69
3044 5274 0.409876 CTCCCCCGATCATCCCTCTA 59.590 60.000 0.00 0.00 0.00 2.43
3045 5275 0.409876 TCCCCCGATCATCCCTCTAG 59.590 60.000 0.00 0.00 0.00 2.43
3046 5276 1.261238 CCCCCGATCATCCCTCTAGC 61.261 65.000 0.00 0.00 0.00 3.42
3047 5277 1.261238 CCCCGATCATCCCTCTAGCC 61.261 65.000 0.00 0.00 0.00 3.93
3048 5278 1.261238 CCCGATCATCCCTCTAGCCC 61.261 65.000 0.00 0.00 0.00 5.19
3049 5279 1.261238 CCGATCATCCCTCTAGCCCC 61.261 65.000 0.00 0.00 0.00 5.80
3050 5280 1.599606 CGATCATCCCTCTAGCCCCG 61.600 65.000 0.00 0.00 0.00 5.73
3051 5281 1.229336 ATCATCCCTCTAGCCCCGG 60.229 63.158 0.00 0.00 0.00 5.73
3052 5282 2.037304 ATCATCCCTCTAGCCCCGGT 62.037 60.000 0.00 0.00 0.00 5.28
3053 5283 2.122813 ATCCCTCTAGCCCCGGTG 60.123 66.667 0.00 0.00 0.00 4.94
3058 5288 4.853142 TCTAGCCCCGGTGCCGAT 62.853 66.667 12.71 0.00 42.83 4.18
3059 5289 4.609018 CTAGCCCCGGTGCCGATG 62.609 72.222 12.71 3.74 42.83 3.84
3062 5292 3.936203 GCCCCGGTGCCGATGATA 61.936 66.667 12.71 0.00 42.83 2.15
3063 5293 3.068881 CCCCGGTGCCGATGATAT 58.931 61.111 12.71 0.00 42.83 1.63
3064 5294 1.374947 CCCCGGTGCCGATGATATT 59.625 57.895 12.71 0.00 42.83 1.28
3065 5295 0.250727 CCCCGGTGCCGATGATATTT 60.251 55.000 12.71 0.00 42.83 1.40
3066 5296 1.156736 CCCGGTGCCGATGATATTTC 58.843 55.000 12.71 0.00 42.83 2.17
3067 5297 1.156736 CCGGTGCCGATGATATTTCC 58.843 55.000 12.71 0.00 42.83 3.13
3068 5298 1.156736 CGGTGCCGATGATATTTCCC 58.843 55.000 4.35 0.00 42.83 3.97
3069 5299 1.534729 GGTGCCGATGATATTTCCCC 58.465 55.000 0.00 0.00 0.00 4.81
3070 5300 1.534729 GTGCCGATGATATTTCCCCC 58.465 55.000 0.00 0.00 0.00 5.40
3071 5301 0.036164 TGCCGATGATATTTCCCCCG 59.964 55.000 0.00 0.00 0.00 5.73
3072 5302 0.676782 GCCGATGATATTTCCCCCGG 60.677 60.000 0.00 0.00 38.58 5.73
3073 5303 0.981183 CCGATGATATTTCCCCCGGA 59.019 55.000 0.73 0.00 37.87 5.14
3074 5304 1.338769 CCGATGATATTTCCCCCGGAC 60.339 57.143 0.73 0.00 37.87 4.79
3075 5305 1.671850 CGATGATATTTCCCCCGGACG 60.672 57.143 0.73 0.00 0.00 4.79
3076 5306 1.621814 GATGATATTTCCCCCGGACGA 59.378 52.381 0.73 0.00 0.00 4.20
3077 5307 1.498264 TGATATTTCCCCCGGACGAA 58.502 50.000 0.73 0.00 0.00 3.85
3078 5308 1.139455 TGATATTTCCCCCGGACGAAC 59.861 52.381 0.73 0.00 0.00 3.95
3079 5309 1.415289 GATATTTCCCCCGGACGAACT 59.585 52.381 0.73 0.48 0.00 3.01
3080 5310 1.278537 TATTTCCCCCGGACGAACTT 58.721 50.000 0.73 0.00 0.00 2.66
3081 5311 0.322187 ATTTCCCCCGGACGAACTTG 60.322 55.000 0.73 0.00 0.00 3.16
3082 5312 3.540367 TTCCCCCGGACGAACTTGC 62.540 63.158 0.73 0.00 0.00 4.01
3083 5313 4.323477 CCCCCGGACGAACTTGCA 62.323 66.667 0.73 0.00 0.00 4.08
3084 5314 3.047877 CCCCGGACGAACTTGCAC 61.048 66.667 0.73 0.00 0.00 4.57
3085 5315 3.047877 CCCGGACGAACTTGCACC 61.048 66.667 0.73 0.00 0.00 5.01
3086 5316 3.411351 CCGGACGAACTTGCACCG 61.411 66.667 0.00 2.86 42.67 4.94
3087 5317 4.072088 CGGACGAACTTGCACCGC 62.072 66.667 0.00 0.00 37.32 5.68
3088 5318 3.723348 GGACGAACTTGCACCGCC 61.723 66.667 0.00 0.00 0.00 6.13
3089 5319 2.970324 GACGAACTTGCACCGCCA 60.970 61.111 0.00 0.00 0.00 5.69
3090 5320 2.954753 GACGAACTTGCACCGCCAG 61.955 63.158 0.00 0.00 0.00 4.85
3091 5321 4.389576 CGAACTTGCACCGCCAGC 62.390 66.667 0.00 0.00 0.00 4.85
3092 5322 4.389576 GAACTTGCACCGCCAGCG 62.390 66.667 4.75 4.75 39.44 5.18
3117 5347 2.274104 GGCCCTGGTGCCGATTTA 59.726 61.111 9.92 0.00 42.54 1.40
3118 5348 1.379309 GGCCCTGGTGCCGATTTAA 60.379 57.895 9.92 0.00 42.54 1.52
3119 5349 0.968393 GGCCCTGGTGCCGATTTAAA 60.968 55.000 9.92 0.00 42.54 1.52
3120 5350 1.111277 GCCCTGGTGCCGATTTAAAT 58.889 50.000 0.00 0.00 0.00 1.40
3121 5351 1.480545 GCCCTGGTGCCGATTTAAATT 59.519 47.619 1.43 0.00 0.00 1.82
3122 5352 2.691011 GCCCTGGTGCCGATTTAAATTA 59.309 45.455 1.43 0.00 0.00 1.40
3123 5353 3.243401 GCCCTGGTGCCGATTTAAATTAG 60.243 47.826 1.43 0.27 0.00 1.73
3124 5354 3.951680 CCCTGGTGCCGATTTAAATTAGT 59.048 43.478 1.43 0.00 0.00 2.24
3125 5355 4.036380 CCCTGGTGCCGATTTAAATTAGTC 59.964 45.833 1.43 0.00 0.00 2.59
3126 5356 4.036380 CCTGGTGCCGATTTAAATTAGTCC 59.964 45.833 1.43 3.42 0.00 3.85
3127 5357 4.850680 TGGTGCCGATTTAAATTAGTCCT 58.149 39.130 1.43 0.00 0.00 3.85
3128 5358 5.258051 TGGTGCCGATTTAAATTAGTCCTT 58.742 37.500 1.43 0.00 0.00 3.36
3129 5359 5.712917 TGGTGCCGATTTAAATTAGTCCTTT 59.287 36.000 1.43 0.00 0.00 3.11
3130 5360 6.209788 TGGTGCCGATTTAAATTAGTCCTTTT 59.790 34.615 1.43 0.00 0.00 2.27
3131 5361 7.393796 TGGTGCCGATTTAAATTAGTCCTTTTA 59.606 33.333 1.43 0.00 0.00 1.52
3132 5362 8.410912 GGTGCCGATTTAAATTAGTCCTTTTAT 58.589 33.333 1.43 0.00 0.00 1.40
3133 5363 9.797556 GTGCCGATTTAAATTAGTCCTTTTATT 57.202 29.630 1.43 0.00 0.00 1.40
3170 5400 6.265577 GCACAAATTTGCTCCGAGTTTATAT 58.734 36.000 18.12 0.00 39.59 0.86
3233 5463 6.241207 TGATTGATTCGAAACAGAGGAAAC 57.759 37.500 8.19 0.00 0.00 2.78
3278 5690 7.352739 GGCGTGTTAAATTAATATGACTCCAG 58.647 38.462 5.99 0.00 0.00 3.86
3298 5710 6.387465 TCCAGTAAAAGTCTAACGTCAGATG 58.613 40.000 0.00 0.00 0.00 2.90
3302 5714 8.004344 CAGTAAAAGTCTAACGTCAGATGTTTG 58.996 37.037 13.35 11.45 0.00 2.93
3310 5722 7.950496 GTCTAACGTCAGATGTTTGACAATAAC 59.050 37.037 29.94 13.38 46.11 1.89
3446 5860 6.255887 CGTAAACTAGATTTGTCATCCTCACC 59.744 42.308 0.00 0.00 0.00 4.02
3448 5862 4.366267 ACTAGATTTGTCATCCTCACCCT 58.634 43.478 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.908508 GGGGGAGATTAGGAGGCC 58.091 66.667 0.00 0.00 0.00 5.19
104 124 2.772568 TTCGTTGCCAATCACACAAG 57.227 45.000 0.00 0.00 0.00 3.16
129 149 3.808728 TGGCTAGAGATTGGTTGCATAC 58.191 45.455 0.00 0.00 0.00 2.39
148 168 6.616774 ATTTTGGCAACTGTTAAATGTTGG 57.383 33.333 17.81 5.86 42.48 3.77
149 169 8.180267 TCAAATTTTGGCAACTGTTAAATGTTG 58.820 29.630 0.00 14.08 44.33 3.33
161 181 1.260297 GGCACGTCAAATTTTGGCAAC 59.740 47.619 13.70 2.58 34.15 4.17
188 208 2.760092 GAGGCTAATTGGTTTGATGCCA 59.240 45.455 0.00 0.00 41.12 4.92
199 219 6.459923 GTGGTAGAGATTAGGAGGCTAATTG 58.540 44.000 0.00 0.00 30.47 2.32
259 533 3.788227 TGTTGGCTAGAGAATGGTTGT 57.212 42.857 0.00 0.00 0.00 3.32
272 546 4.348863 TGGCAATTGTTAAATGTTGGCT 57.651 36.364 7.40 0.00 44.50 4.75
332 606 1.023719 TGGGGGTGGAGATTAGGAGA 58.976 55.000 0.00 0.00 0.00 3.71
353 627 3.669536 TCGTTGCCAATCACATAACAGA 58.330 40.909 0.00 0.00 0.00 3.41
359 633 3.995705 CCAATTTTCGTTGCCAATCACAT 59.004 39.130 0.00 0.00 0.00 3.21
369 643 4.901866 GGTTGCATACCAATTTTCGTTG 57.098 40.909 11.69 0.00 46.92 4.10
381 655 3.808728 TGGCTAGAGATTGGTTGCATAC 58.191 45.455 0.00 0.00 0.00 2.39
458 732 5.850046 AATTGGGGGTAGAGATTAGGATG 57.150 43.478 0.00 0.00 0.00 3.51
481 755 7.588143 AATTTTCGTTGTCAATCACACAAAA 57.412 28.000 0.00 0.00 35.53 2.44
558 832 5.747951 TTGGTTTCATGTCAAAAATTGGC 57.252 34.783 0.00 0.00 35.37 4.52
559 833 8.016801 GCTAATTGGTTTCATGTCAAAAATTGG 58.983 33.333 0.00 0.00 0.00 3.16
560 834 8.776470 AGCTAATTGGTTTCATGTCAAAAATTG 58.224 29.630 0.00 0.00 0.00 2.32
561 835 8.907222 AGCTAATTGGTTTCATGTCAAAAATT 57.093 26.923 0.00 0.00 0.00 1.82
562 836 8.907222 AAGCTAATTGGTTTCATGTCAAAAAT 57.093 26.923 0.00 0.00 31.57 1.82
563 837 7.440856 GGAAGCTAATTGGTTTCATGTCAAAAA 59.559 33.333 17.73 0.00 36.40 1.94
564 838 6.928492 GGAAGCTAATTGGTTTCATGTCAAAA 59.072 34.615 17.73 0.00 36.40 2.44
565 839 6.267471 AGGAAGCTAATTGGTTTCATGTCAAA 59.733 34.615 17.73 0.00 36.40 2.69
566 840 5.774690 AGGAAGCTAATTGGTTTCATGTCAA 59.225 36.000 17.73 0.00 36.40 3.18
567 841 5.324409 AGGAAGCTAATTGGTTTCATGTCA 58.676 37.500 17.73 0.00 36.40 3.58
568 842 5.904362 AGGAAGCTAATTGGTTTCATGTC 57.096 39.130 17.73 3.30 36.40 3.06
569 843 7.836183 AGATTAGGAAGCTAATTGGTTTCATGT 59.164 33.333 17.73 6.61 36.40 3.21
570 844 8.230472 AGATTAGGAAGCTAATTGGTTTCATG 57.770 34.615 17.73 0.00 36.40 3.07
571 845 7.503902 GGAGATTAGGAAGCTAATTGGTTTCAT 59.496 37.037 17.73 14.04 36.40 2.57
572 846 6.828785 GGAGATTAGGAAGCTAATTGGTTTCA 59.171 38.462 17.73 1.02 36.40 2.69
573 847 6.828785 TGGAGATTAGGAAGCTAATTGGTTTC 59.171 38.462 9.48 9.48 36.40 2.78
574 848 6.603599 GTGGAGATTAGGAAGCTAATTGGTTT 59.396 38.462 0.00 0.00 36.40 3.27
575 849 6.122964 GTGGAGATTAGGAAGCTAATTGGTT 58.877 40.000 0.00 0.00 39.32 3.67
576 850 5.398012 GGTGGAGATTAGGAAGCTAATTGGT 60.398 44.000 0.00 0.00 30.47 3.67
577 851 5.066593 GGTGGAGATTAGGAAGCTAATTGG 58.933 45.833 0.00 0.00 30.47 3.16
578 852 5.066593 GGGTGGAGATTAGGAAGCTAATTG 58.933 45.833 0.00 0.00 30.47 2.32
579 853 4.104897 GGGGTGGAGATTAGGAAGCTAATT 59.895 45.833 0.00 0.00 30.47 1.40
580 854 3.653352 GGGGTGGAGATTAGGAAGCTAAT 59.347 47.826 0.00 0.00 32.74 1.73
581 855 3.046374 GGGGTGGAGATTAGGAAGCTAA 58.954 50.000 0.00 0.00 0.00 3.09
582 856 2.690840 GGGGTGGAGATTAGGAAGCTA 58.309 52.381 0.00 0.00 0.00 3.32
583 857 1.512735 GGGGTGGAGATTAGGAAGCT 58.487 55.000 0.00 0.00 0.00 3.74
584 858 0.474614 GGGGGTGGAGATTAGGAAGC 59.525 60.000 0.00 0.00 0.00 3.86
585 859 1.893315 TGGGGGTGGAGATTAGGAAG 58.107 55.000 0.00 0.00 0.00 3.46
586 860 1.920351 GTTGGGGGTGGAGATTAGGAA 59.080 52.381 0.00 0.00 0.00 3.36
587 861 1.591768 GTTGGGGGTGGAGATTAGGA 58.408 55.000 0.00 0.00 0.00 2.94
588 862 0.551396 GGTTGGGGGTGGAGATTAGG 59.449 60.000 0.00 0.00 0.00 2.69
589 863 1.212935 CAGGTTGGGGGTGGAGATTAG 59.787 57.143 0.00 0.00 0.00 1.73
590 864 1.295020 CAGGTTGGGGGTGGAGATTA 58.705 55.000 0.00 0.00 0.00 1.75
591 865 0.776080 ACAGGTTGGGGGTGGAGATT 60.776 55.000 0.00 0.00 0.00 2.40
592 866 0.776080 AACAGGTTGGGGGTGGAGAT 60.776 55.000 0.00 0.00 0.00 2.75
593 867 0.104356 TAACAGGTTGGGGGTGGAGA 60.104 55.000 0.00 0.00 0.00 3.71
594 868 0.999712 ATAACAGGTTGGGGGTGGAG 59.000 55.000 0.00 0.00 0.00 3.86
595 869 0.701731 CATAACAGGTTGGGGGTGGA 59.298 55.000 0.00 0.00 0.00 4.02
596 870 0.407918 ACATAACAGGTTGGGGGTGG 59.592 55.000 0.00 0.00 0.00 4.61
597 871 1.074727 TCACATAACAGGTTGGGGGTG 59.925 52.381 0.00 0.00 0.00 4.61
598 872 1.451449 TCACATAACAGGTTGGGGGT 58.549 50.000 0.00 0.00 0.00 4.95
612 886 3.995705 CCAATTTTCGTTGCCAATCACAT 59.004 39.130 0.00 0.00 0.00 3.21
621 895 3.122780 GGTTGCATACCAATTTTCGTTGC 59.877 43.478 11.69 0.00 46.92 4.17
733 1008 7.588143 AATTTTCGTTGTCAATCACACAAAA 57.412 28.000 0.00 0.00 35.53 2.44
811 1086 8.016801 GCTAATTGGTTTCATGTCAAAAATTGG 58.983 33.333 0.00 0.00 0.00 3.16
825 1100 6.828785 TGGAGATTAGGAAGCTAATTGGTTTC 59.171 38.462 9.48 9.48 36.40 2.78
857 1132 0.975887 CCCACACCCCCTGAAAATTG 59.024 55.000 0.00 0.00 0.00 2.32
858 1133 0.835971 GCCCACACCCCCTGAAAATT 60.836 55.000 0.00 0.00 0.00 1.82
859 1134 1.229177 GCCCACACCCCCTGAAAAT 60.229 57.895 0.00 0.00 0.00 1.82
860 1135 2.200092 GCCCACACCCCCTGAAAA 59.800 61.111 0.00 0.00 0.00 2.29
861 1136 3.909651 GGCCCACACCCCCTGAAA 61.910 66.667 0.00 0.00 0.00 2.69
870 1150 3.268103 AATGACGAGGGGCCCACAC 62.268 63.158 27.72 15.69 0.00 3.82
915 1209 4.186926 GTCGGGGGTTTATAAAGTGACTC 58.813 47.826 0.00 0.00 0.00 3.36
1028 1338 3.233980 CGGGGATGAGGATGCCGA 61.234 66.667 0.00 0.00 41.05 5.54
2061 2403 3.665190 GGTCTCTTTGACGACCATCTTT 58.335 45.455 3.72 0.00 46.98 2.52
2578 2966 6.943981 TCATTTGTTCAACTAACTTCACTCG 58.056 36.000 0.00 0.00 38.99 4.18
2655 3047 7.894376 ATTTGTGCTGGAATTCAAAACATAG 57.106 32.000 7.93 0.00 34.32 2.23
2773 5003 6.828785 GGGATTTAAATGGACTGACACATAGT 59.171 38.462 5.17 0.00 0.00 2.12
2774 5004 6.828273 TGGGATTTAAATGGACTGACACATAG 59.172 38.462 5.17 0.00 0.00 2.23
2775 5005 6.726379 TGGGATTTAAATGGACTGACACATA 58.274 36.000 5.17 0.00 0.00 2.29
2776 5006 5.579047 TGGGATTTAAATGGACTGACACAT 58.421 37.500 5.17 0.00 0.00 3.21
2777 5007 4.991776 TGGGATTTAAATGGACTGACACA 58.008 39.130 5.17 0.00 0.00 3.72
2778 5008 5.975693 TTGGGATTTAAATGGACTGACAC 57.024 39.130 5.17 0.00 0.00 3.67
2779 5009 7.385267 CAAATTGGGATTTAAATGGACTGACA 58.615 34.615 5.17 0.00 33.78 3.58
2780 5010 6.818142 CCAAATTGGGATTTAAATGGACTGAC 59.182 38.462 5.17 0.00 33.78 3.51
2781 5011 6.728164 TCCAAATTGGGATTTAAATGGACTGA 59.272 34.615 12.67 0.00 38.32 3.41
2782 5012 6.945218 TCCAAATTGGGATTTAAATGGACTG 58.055 36.000 12.67 0.00 38.32 3.51
2783 5013 7.754091 ATCCAAATTGGGATTTAAATGGACT 57.246 32.000 8.73 0.00 45.42 3.85
2795 5025 3.947196 CGATTGACTGATCCAAATTGGGA 59.053 43.478 12.67 3.37 42.21 4.37
2796 5026 3.696051 ACGATTGACTGATCCAAATTGGG 59.304 43.478 12.67 0.00 38.32 4.12
2797 5027 4.970662 ACGATTGACTGATCCAAATTGG 57.029 40.909 5.48 5.48 39.43 3.16
2798 5028 6.400303 GCAAAACGATTGACTGATCCAAATTG 60.400 38.462 9.35 0.00 0.00 2.32
2799 5029 5.634859 GCAAAACGATTGACTGATCCAAATT 59.365 36.000 9.35 0.00 0.00 1.82
2800 5030 5.163513 GCAAAACGATTGACTGATCCAAAT 58.836 37.500 9.35 0.00 0.00 2.32
2801 5031 4.545610 GCAAAACGATTGACTGATCCAAA 58.454 39.130 9.35 0.00 0.00 3.28
2802 5032 4.159377 GCAAAACGATTGACTGATCCAA 57.841 40.909 9.35 0.00 0.00 3.53
2803 5033 3.829886 GCAAAACGATTGACTGATCCA 57.170 42.857 9.35 0.00 0.00 3.41
2817 5047 1.019278 TGAGATCGAGGGCGCAAAAC 61.019 55.000 10.83 0.00 37.46 2.43
2818 5048 0.740868 CTGAGATCGAGGGCGCAAAA 60.741 55.000 10.83 0.00 37.46 2.44
2819 5049 1.153568 CTGAGATCGAGGGCGCAAA 60.154 57.895 10.83 0.00 37.46 3.68
2820 5050 1.395045 ATCTGAGATCGAGGGCGCAA 61.395 55.000 10.83 0.00 37.46 4.85
2821 5051 1.800283 GATCTGAGATCGAGGGCGCA 61.800 60.000 10.83 0.00 37.46 6.09
2822 5052 1.080839 GATCTGAGATCGAGGGCGC 60.081 63.158 6.70 0.00 37.46 6.53
2823 5053 1.814793 TAGATCTGAGATCGAGGGCG 58.185 55.000 16.12 0.00 39.35 6.13
2824 5054 2.095466 CGTTAGATCTGAGATCGAGGGC 60.095 54.545 16.12 6.23 0.00 5.19
2825 5055 2.486203 CCGTTAGATCTGAGATCGAGGG 59.514 54.545 16.12 17.74 0.00 4.30
2826 5056 2.095466 GCCGTTAGATCTGAGATCGAGG 60.095 54.545 16.12 17.01 0.00 4.63
2827 5057 2.811431 AGCCGTTAGATCTGAGATCGAG 59.189 50.000 16.12 9.07 0.00 4.04
2828 5058 2.809119 GAGCCGTTAGATCTGAGATCGA 59.191 50.000 16.12 8.95 0.00 3.59
2829 5059 2.095466 GGAGCCGTTAGATCTGAGATCG 60.095 54.545 16.12 5.62 0.00 3.69
2830 5060 3.153919 AGGAGCCGTTAGATCTGAGATC 58.846 50.000 14.47 14.47 0.00 2.75
2831 5061 3.237268 AGGAGCCGTTAGATCTGAGAT 57.763 47.619 5.18 0.00 0.00 2.75
2832 5062 2.738587 AGGAGCCGTTAGATCTGAGA 57.261 50.000 5.18 0.00 0.00 3.27
2833 5063 3.886505 ACTTAGGAGCCGTTAGATCTGAG 59.113 47.826 5.18 0.00 0.00 3.35
2834 5064 3.884091 GACTTAGGAGCCGTTAGATCTGA 59.116 47.826 5.18 0.00 0.00 3.27
2835 5065 3.632604 TGACTTAGGAGCCGTTAGATCTG 59.367 47.826 5.18 0.00 0.00 2.90
2836 5066 3.899726 TGACTTAGGAGCCGTTAGATCT 58.100 45.455 0.00 0.00 0.00 2.75
2837 5067 4.857509 ATGACTTAGGAGCCGTTAGATC 57.142 45.455 0.00 0.00 0.00 2.75
2838 5068 5.453480 GGAAATGACTTAGGAGCCGTTAGAT 60.453 44.000 0.00 0.00 0.00 1.98
2839 5069 4.142004 GGAAATGACTTAGGAGCCGTTAGA 60.142 45.833 0.00 0.00 0.00 2.10
2840 5070 4.120589 GGAAATGACTTAGGAGCCGTTAG 58.879 47.826 0.00 0.00 0.00 2.34
2841 5071 3.118519 GGGAAATGACTTAGGAGCCGTTA 60.119 47.826 0.00 0.00 0.00 3.18
2842 5072 2.355818 GGGAAATGACTTAGGAGCCGTT 60.356 50.000 0.00 0.00 0.00 4.44
2843 5073 1.209747 GGGAAATGACTTAGGAGCCGT 59.790 52.381 0.00 0.00 0.00 5.68
2844 5074 1.209504 TGGGAAATGACTTAGGAGCCG 59.790 52.381 0.00 0.00 0.00 5.52
2845 5075 2.644676 GTGGGAAATGACTTAGGAGCC 58.355 52.381 0.00 0.00 0.00 4.70
2846 5076 2.239907 AGGTGGGAAATGACTTAGGAGC 59.760 50.000 0.00 0.00 0.00 4.70
2847 5077 3.118223 GGAGGTGGGAAATGACTTAGGAG 60.118 52.174 0.00 0.00 0.00 3.69
2848 5078 2.844348 GGAGGTGGGAAATGACTTAGGA 59.156 50.000 0.00 0.00 0.00 2.94
2849 5079 2.092375 GGGAGGTGGGAAATGACTTAGG 60.092 54.545 0.00 0.00 0.00 2.69
2850 5080 2.576191 TGGGAGGTGGGAAATGACTTAG 59.424 50.000 0.00 0.00 0.00 2.18
2851 5081 2.638325 TGGGAGGTGGGAAATGACTTA 58.362 47.619 0.00 0.00 0.00 2.24
2852 5082 1.455822 TGGGAGGTGGGAAATGACTT 58.544 50.000 0.00 0.00 0.00 3.01
2853 5083 1.455822 TTGGGAGGTGGGAAATGACT 58.544 50.000 0.00 0.00 0.00 3.41
2854 5084 2.102578 CATTGGGAGGTGGGAAATGAC 58.897 52.381 0.00 0.00 31.34 3.06
2855 5085 1.715931 ACATTGGGAGGTGGGAAATGA 59.284 47.619 0.00 0.00 33.47 2.57
2856 5086 2.236489 ACATTGGGAGGTGGGAAATG 57.764 50.000 0.00 0.00 34.99 2.32
2857 5087 3.274281 AAACATTGGGAGGTGGGAAAT 57.726 42.857 0.00 0.00 0.00 2.17
2858 5088 2.785357 AAACATTGGGAGGTGGGAAA 57.215 45.000 0.00 0.00 0.00 3.13
2859 5089 2.178984 AGAAAACATTGGGAGGTGGGAA 59.821 45.455 0.00 0.00 0.00 3.97
2860 5090 1.786441 AGAAAACATTGGGAGGTGGGA 59.214 47.619 0.00 0.00 0.00 4.37
2861 5091 2.309136 AGAAAACATTGGGAGGTGGG 57.691 50.000 0.00 0.00 0.00 4.61
2862 5092 2.562738 GGAAGAAAACATTGGGAGGTGG 59.437 50.000 0.00 0.00 0.00 4.61
2863 5093 3.500343 AGGAAGAAAACATTGGGAGGTG 58.500 45.455 0.00 0.00 0.00 4.00
2864 5094 3.500471 GGAGGAAGAAAACATTGGGAGGT 60.500 47.826 0.00 0.00 0.00 3.85
2865 5095 3.092301 GGAGGAAGAAAACATTGGGAGG 58.908 50.000 0.00 0.00 0.00 4.30
2866 5096 3.760684 CAGGAGGAAGAAAACATTGGGAG 59.239 47.826 0.00 0.00 0.00 4.30
2867 5097 3.397618 TCAGGAGGAAGAAAACATTGGGA 59.602 43.478 0.00 0.00 0.00 4.37
2868 5098 3.507622 GTCAGGAGGAAGAAAACATTGGG 59.492 47.826 0.00 0.00 0.00 4.12
2869 5099 3.189287 CGTCAGGAGGAAGAAAACATTGG 59.811 47.826 0.00 0.00 0.00 3.16
2870 5100 3.365364 GCGTCAGGAGGAAGAAAACATTG 60.365 47.826 0.00 0.00 0.00 2.82
2871 5101 2.814336 GCGTCAGGAGGAAGAAAACATT 59.186 45.455 0.00 0.00 0.00 2.71
2872 5102 2.224523 TGCGTCAGGAGGAAGAAAACAT 60.225 45.455 0.00 0.00 0.00 2.71
2873 5103 1.140052 TGCGTCAGGAGGAAGAAAACA 59.860 47.619 0.00 0.00 0.00 2.83
2874 5104 1.531578 GTGCGTCAGGAGGAAGAAAAC 59.468 52.381 0.00 0.00 0.00 2.43
2875 5105 1.140052 TGTGCGTCAGGAGGAAGAAAA 59.860 47.619 0.00 0.00 0.00 2.29
2876 5106 0.756294 TGTGCGTCAGGAGGAAGAAA 59.244 50.000 0.00 0.00 0.00 2.52
2877 5107 0.976641 ATGTGCGTCAGGAGGAAGAA 59.023 50.000 0.00 0.00 0.00 2.52
2878 5108 0.532573 GATGTGCGTCAGGAGGAAGA 59.467 55.000 0.00 0.00 0.00 2.87
2879 5109 0.534412 AGATGTGCGTCAGGAGGAAG 59.466 55.000 0.00 0.00 0.00 3.46
2880 5110 0.976641 AAGATGTGCGTCAGGAGGAA 59.023 50.000 0.00 0.00 0.00 3.36
2881 5111 0.532573 GAAGATGTGCGTCAGGAGGA 59.467 55.000 0.00 0.00 0.00 3.71
2882 5112 0.534412 AGAAGATGTGCGTCAGGAGG 59.466 55.000 0.00 0.00 0.00 4.30
2883 5113 2.266554 GAAGAAGATGTGCGTCAGGAG 58.733 52.381 0.00 0.00 0.00 3.69
2884 5114 1.066858 GGAAGAAGATGTGCGTCAGGA 60.067 52.381 0.00 0.00 0.00 3.86
2885 5115 1.338105 TGGAAGAAGATGTGCGTCAGG 60.338 52.381 0.00 0.00 0.00 3.86
2886 5116 2.084610 TGGAAGAAGATGTGCGTCAG 57.915 50.000 0.00 0.00 0.00 3.51
2887 5117 2.143122 GTTGGAAGAAGATGTGCGTCA 58.857 47.619 0.00 0.00 0.00 4.35
2888 5118 1.464997 GGTTGGAAGAAGATGTGCGTC 59.535 52.381 0.00 0.00 0.00 5.19
2889 5119 1.202758 TGGTTGGAAGAAGATGTGCGT 60.203 47.619 0.00 0.00 0.00 5.24
2890 5120 1.522668 TGGTTGGAAGAAGATGTGCG 58.477 50.000 0.00 0.00 0.00 5.34
2891 5121 2.424956 GGATGGTTGGAAGAAGATGTGC 59.575 50.000 0.00 0.00 0.00 4.57
2892 5122 3.019564 GGGATGGTTGGAAGAAGATGTG 58.980 50.000 0.00 0.00 0.00 3.21
2893 5123 2.024941 GGGGATGGTTGGAAGAAGATGT 60.025 50.000 0.00 0.00 0.00 3.06
2894 5124 2.025037 TGGGGATGGTTGGAAGAAGATG 60.025 50.000 0.00 0.00 0.00 2.90
2895 5125 2.024941 GTGGGGATGGTTGGAAGAAGAT 60.025 50.000 0.00 0.00 0.00 2.40
2896 5126 1.354368 GTGGGGATGGTTGGAAGAAGA 59.646 52.381 0.00 0.00 0.00 2.87
2897 5127 1.839424 GTGGGGATGGTTGGAAGAAG 58.161 55.000 0.00 0.00 0.00 2.85
2898 5128 0.037590 CGTGGGGATGGTTGGAAGAA 59.962 55.000 0.00 0.00 0.00 2.52
2899 5129 1.682849 CGTGGGGATGGTTGGAAGA 59.317 57.895 0.00 0.00 0.00 2.87
2900 5130 1.378514 CCGTGGGGATGGTTGGAAG 60.379 63.158 0.00 0.00 34.06 3.46
2901 5131 1.848431 TCCGTGGGGATGGTTGGAA 60.848 57.895 0.00 0.00 37.43 3.53
2902 5132 2.204013 TCCGTGGGGATGGTTGGA 60.204 61.111 0.00 0.00 37.43 3.53
2903 5133 2.045340 GTCCGTGGGGATGGTTGG 60.045 66.667 0.00 0.00 46.14 3.77
2904 5134 2.045340 GGTCCGTGGGGATGGTTG 60.045 66.667 0.00 0.00 46.14 3.77
2905 5135 2.530661 TGGTCCGTGGGGATGGTT 60.531 61.111 0.00 0.00 46.14 3.67
2906 5136 3.327404 GTGGTCCGTGGGGATGGT 61.327 66.667 0.00 0.00 46.14 3.55
2907 5137 4.109675 GGTGGTCCGTGGGGATGG 62.110 72.222 0.00 0.00 46.14 3.51
2986 5216 4.468689 GAGGTTTCGGGGAGGGCG 62.469 72.222 0.00 0.00 0.00 6.13
2987 5217 4.111053 GGAGGTTTCGGGGAGGGC 62.111 72.222 0.00 0.00 0.00 5.19
2988 5218 2.285442 AGGAGGTTTCGGGGAGGG 60.285 66.667 0.00 0.00 0.00 4.30
2989 5219 2.368011 GGAGGAGGTTTCGGGGAGG 61.368 68.421 0.00 0.00 0.00 4.30
2990 5220 2.368011 GGGAGGAGGTTTCGGGGAG 61.368 68.421 0.00 0.00 0.00 4.30
2991 5221 2.285144 GGGAGGAGGTTTCGGGGA 60.285 66.667 0.00 0.00 0.00 4.81
2992 5222 2.609610 TGGGAGGAGGTTTCGGGG 60.610 66.667 0.00 0.00 0.00 5.73
2993 5223 2.669240 GTGGGAGGAGGTTTCGGG 59.331 66.667 0.00 0.00 0.00 5.14
2994 5224 2.669240 GGTGGGAGGAGGTTTCGG 59.331 66.667 0.00 0.00 0.00 4.30
2995 5225 2.264794 CGGTGGGAGGAGGTTTCG 59.735 66.667 0.00 0.00 0.00 3.46
2996 5226 1.295746 GACGGTGGGAGGAGGTTTC 59.704 63.158 0.00 0.00 0.00 2.78
2997 5227 2.580601 CGACGGTGGGAGGAGGTTT 61.581 63.158 0.00 0.00 0.00 3.27
2998 5228 2.995574 CGACGGTGGGAGGAGGTT 60.996 66.667 0.00 0.00 0.00 3.50
2999 5229 4.296729 ACGACGGTGGGAGGAGGT 62.297 66.667 0.00 0.00 0.00 3.85
3000 5230 3.760035 CACGACGGTGGGAGGAGG 61.760 72.222 0.00 0.00 40.58 4.30
3001 5231 4.436998 GCACGACGGTGGGAGGAG 62.437 72.222 0.00 0.00 44.54 3.69
3002 5232 3.572447 TAGCACGACGGTGGGAGGA 62.572 63.158 0.00 0.00 44.54 3.71
3003 5233 3.066190 TAGCACGACGGTGGGAGG 61.066 66.667 0.00 0.00 44.54 4.30
3004 5234 2.181021 GTAGCACGACGGTGGGAG 59.819 66.667 0.00 0.00 44.54 4.30
3005 5235 3.376078 GGTAGCACGACGGTGGGA 61.376 66.667 0.00 0.00 44.54 4.37
3006 5236 4.789075 CGGTAGCACGACGGTGGG 62.789 72.222 0.00 0.00 44.54 4.61
3007 5237 3.740397 TCGGTAGCACGACGGTGG 61.740 66.667 0.00 0.00 44.54 4.61
3013 5243 2.753043 GGGGAGTCGGTAGCACGA 60.753 66.667 0.00 0.00 41.13 4.35
3014 5244 3.834799 GGGGGAGTCGGTAGCACG 61.835 72.222 0.00 0.00 0.00 5.34
3015 5245 3.834799 CGGGGGAGTCGGTAGCAC 61.835 72.222 0.00 0.00 0.00 4.40
3016 5246 3.369410 ATCGGGGGAGTCGGTAGCA 62.369 63.158 0.00 0.00 0.00 3.49
3017 5247 2.521224 ATCGGGGGAGTCGGTAGC 60.521 66.667 0.00 0.00 0.00 3.58
3018 5248 0.539901 ATGATCGGGGGAGTCGGTAG 60.540 60.000 0.00 0.00 0.00 3.18
3019 5249 0.538977 GATGATCGGGGGAGTCGGTA 60.539 60.000 0.00 0.00 0.00 4.02
3020 5250 1.833049 GATGATCGGGGGAGTCGGT 60.833 63.158 0.00 0.00 0.00 4.69
3021 5251 2.574955 GGATGATCGGGGGAGTCGG 61.575 68.421 0.00 0.00 0.00 4.79
3022 5252 2.574955 GGGATGATCGGGGGAGTCG 61.575 68.421 0.00 0.00 0.00 4.18
3023 5253 1.152226 AGGGATGATCGGGGGAGTC 60.152 63.158 0.00 0.00 0.00 3.36
3024 5254 1.152226 GAGGGATGATCGGGGGAGT 60.152 63.158 0.00 0.00 0.00 3.85
3025 5255 0.409876 TAGAGGGATGATCGGGGGAG 59.590 60.000 0.00 0.00 0.00 4.30
3026 5256 0.409876 CTAGAGGGATGATCGGGGGA 59.590 60.000 0.00 0.00 0.00 4.81
3027 5257 1.261238 GCTAGAGGGATGATCGGGGG 61.261 65.000 0.00 0.00 0.00 5.40
3028 5258 1.261238 GGCTAGAGGGATGATCGGGG 61.261 65.000 0.00 0.00 0.00 5.73
3029 5259 1.261238 GGGCTAGAGGGATGATCGGG 61.261 65.000 0.00 0.00 0.00 5.14
3030 5260 1.261238 GGGGCTAGAGGGATGATCGG 61.261 65.000 0.00 0.00 0.00 4.18
3031 5261 1.599606 CGGGGCTAGAGGGATGATCG 61.600 65.000 0.00 0.00 0.00 3.69
3032 5262 1.261238 CCGGGGCTAGAGGGATGATC 61.261 65.000 0.00 0.00 0.00 2.92
3033 5263 1.229336 CCGGGGCTAGAGGGATGAT 60.229 63.158 0.00 0.00 0.00 2.45
3034 5264 2.201490 CCGGGGCTAGAGGGATGA 59.799 66.667 0.00 0.00 0.00 2.92
3035 5265 2.122813 ACCGGGGCTAGAGGGATG 60.123 66.667 6.32 0.00 0.00 3.51
3036 5266 2.122813 CACCGGGGCTAGAGGGAT 60.123 66.667 6.32 0.00 0.00 3.85
3041 5271 4.853142 ATCGGCACCGGGGCTAGA 62.853 66.667 31.11 27.48 40.61 2.43
3042 5272 4.609018 CATCGGCACCGGGGCTAG 62.609 72.222 31.11 22.99 40.61 3.42
3045 5275 2.748058 AATATCATCGGCACCGGGGC 62.748 60.000 24.13 24.13 40.25 5.80
3046 5276 0.250727 AAATATCATCGGCACCGGGG 60.251 55.000 6.32 0.84 40.25 5.73
3047 5277 1.156736 GAAATATCATCGGCACCGGG 58.843 55.000 6.32 2.28 40.25 5.73
3048 5278 1.156736 GGAAATATCATCGGCACCGG 58.843 55.000 9.58 0.00 40.25 5.28
3049 5279 1.156736 GGGAAATATCATCGGCACCG 58.843 55.000 1.73 1.73 41.35 4.94
3050 5280 1.534729 GGGGAAATATCATCGGCACC 58.465 55.000 0.00 0.00 0.00 5.01
3051 5281 1.534729 GGGGGAAATATCATCGGCAC 58.465 55.000 0.00 0.00 0.00 5.01
3052 5282 0.036164 CGGGGGAAATATCATCGGCA 59.964 55.000 0.00 0.00 0.00 5.69
3053 5283 0.676782 CCGGGGGAAATATCATCGGC 60.677 60.000 0.00 0.00 31.06 5.54
3054 5284 0.981183 TCCGGGGGAAATATCATCGG 59.019 55.000 0.00 0.00 36.16 4.18
3055 5285 1.671850 CGTCCGGGGGAAATATCATCG 60.672 57.143 0.00 0.00 31.38 3.84
3056 5286 1.621814 TCGTCCGGGGGAAATATCATC 59.378 52.381 0.00 0.00 31.38 2.92
3057 5287 1.724545 TCGTCCGGGGGAAATATCAT 58.275 50.000 0.00 0.00 31.38 2.45
3058 5288 1.139455 GTTCGTCCGGGGGAAATATCA 59.861 52.381 0.00 0.00 31.38 2.15
3059 5289 1.415289 AGTTCGTCCGGGGGAAATATC 59.585 52.381 0.00 0.00 31.38 1.63
3060 5290 1.503800 AGTTCGTCCGGGGGAAATAT 58.496 50.000 0.00 0.00 31.38 1.28
3061 5291 1.065998 CAAGTTCGTCCGGGGGAAATA 60.066 52.381 0.00 0.00 31.38 1.40
3062 5292 0.322187 CAAGTTCGTCCGGGGGAAAT 60.322 55.000 0.00 1.62 31.38 2.17
3063 5293 1.071814 CAAGTTCGTCCGGGGGAAA 59.928 57.895 0.00 0.00 31.38 3.13
3064 5294 2.745037 CAAGTTCGTCCGGGGGAA 59.255 61.111 0.00 2.33 31.38 3.97
3065 5295 4.011517 GCAAGTTCGTCCGGGGGA 62.012 66.667 0.00 0.00 0.00 4.81
3066 5296 4.323477 TGCAAGTTCGTCCGGGGG 62.323 66.667 0.00 0.00 0.00 5.40
3067 5297 3.047877 GTGCAAGTTCGTCCGGGG 61.048 66.667 0.00 0.00 0.00 5.73
3068 5298 3.047877 GGTGCAAGTTCGTCCGGG 61.048 66.667 0.00 0.00 0.00 5.73
3069 5299 3.411351 CGGTGCAAGTTCGTCCGG 61.411 66.667 0.00 0.00 37.92 5.14
3070 5300 4.072088 GCGGTGCAAGTTCGTCCG 62.072 66.667 5.37 5.37 43.37 4.79
3071 5301 3.723348 GGCGGTGCAAGTTCGTCC 61.723 66.667 0.00 0.00 0.00 4.79
3072 5302 2.954753 CTGGCGGTGCAAGTTCGTC 61.955 63.158 0.00 0.00 0.00 4.20
3073 5303 2.972505 CTGGCGGTGCAAGTTCGT 60.973 61.111 0.00 0.00 0.00 3.85
3074 5304 4.389576 GCTGGCGGTGCAAGTTCG 62.390 66.667 0.00 0.00 31.11 3.95
3075 5305 4.389576 CGCTGGCGGTGCAAGTTC 62.390 66.667 7.12 0.00 31.11 3.01
3101 5331 1.111277 ATTTAAATCGGCACCAGGGC 58.889 50.000 0.00 0.00 39.06 5.19
3102 5332 3.951680 ACTAATTTAAATCGGCACCAGGG 59.048 43.478 0.10 0.00 0.00 4.45
3103 5333 4.036380 GGACTAATTTAAATCGGCACCAGG 59.964 45.833 0.10 0.00 0.00 4.45
3104 5334 4.881850 AGGACTAATTTAAATCGGCACCAG 59.118 41.667 0.10 0.00 0.00 4.00
3105 5335 4.850680 AGGACTAATTTAAATCGGCACCA 58.149 39.130 0.10 0.00 0.00 4.17
3106 5336 5.830000 AAGGACTAATTTAAATCGGCACC 57.170 39.130 0.10 2.84 0.00 5.01
3107 5337 9.797556 AATAAAAGGACTAATTTAAATCGGCAC 57.202 29.630 0.10 0.00 0.00 5.01
3133 5363 5.163774 GCAAATTTGTGCTGGAACTCAAAAA 60.164 36.000 19.03 0.00 41.51 1.94
3161 5391 6.208994 ACTCACAGGACCCGATATATAAACTC 59.791 42.308 0.00 0.00 0.00 3.01
3170 5400 3.705051 ACTTTACTCACAGGACCCGATA 58.295 45.455 0.00 0.00 0.00 2.92
3202 5432 4.937015 TGTTTCGAATCAATCATGCTCTCA 59.063 37.500 6.45 0.00 0.00 3.27
3204 5434 5.181009 TCTGTTTCGAATCAATCATGCTCT 58.819 37.500 10.00 0.00 0.00 4.09
3208 5438 6.426980 TTCCTCTGTTTCGAATCAATCATG 57.573 37.500 10.00 0.00 0.00 3.07
3278 5690 8.002665 GTCAAACATCTGACGTTAGACTTTTAC 58.997 37.037 12.76 10.47 36.64 2.01
3298 5710 7.597643 TCGTTCGATTTTGTTATTGTCAAAC 57.402 32.000 0.00 0.00 35.05 2.93
3329 5743 2.223688 CCTCCGCAAACACAAATTGTCA 60.224 45.455 0.00 0.00 37.51 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.