Multiple sequence alignment - TraesCS5D01G295600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G295600 chr5D 100.000 3177 0 0 1 3177 393609783 393606607 0.000000e+00 5867.0
1 TraesCS5D01G295600 chr5D 89.323 1049 76 15 1216 2244 393569984 393568952 0.000000e+00 1284.0
2 TraesCS5D01G295600 chr5D 89.792 578 52 4 1274 1847 393712153 393711579 0.000000e+00 734.0
3 TraesCS5D01G295600 chr5D 85.604 389 45 8 1288 1665 393752901 393752513 6.390000e-107 398.0
4 TraesCS5D01G295600 chr5D 89.744 312 29 1 322 630 393636740 393636429 2.300000e-106 396.0
5 TraesCS5D01G295600 chr5D 82.917 240 20 7 8 247 393638112 393637894 2.500000e-46 196.0
6 TraesCS5D01G295600 chr5A 94.622 2510 70 24 257 2730 495360560 495358080 0.000000e+00 3827.0
7 TraesCS5D01G295600 chr5A 90.789 988 71 11 1270 2244 495339880 495338900 0.000000e+00 1303.0
8 TraesCS5D01G295600 chr5A 86.892 473 22 15 2727 3177 503687520 503687066 7.920000e-136 494.0
9 TraesCS5D01G295600 chr5A 96.538 260 7 2 4 263 495361093 495360836 2.260000e-116 429.0
10 TraesCS5D01G295600 chr5A 88.715 319 27 6 322 633 495399913 495399597 6.430000e-102 381.0
11 TraesCS5D01G295600 chr5A 84.074 270 34 7 1407 1667 495840695 495840426 5.260000e-63 252.0
12 TraesCS5D01G295600 chr5A 84.766 256 27 7 4 259 495577321 495577078 2.450000e-61 246.0
13 TraesCS5D01G295600 chr5B 90.864 1007 64 12 1273 2251 473291941 473290935 0.000000e+00 1325.0
14 TraesCS5D01G295600 chr5B 88.015 1093 82 21 1180 2252 473448690 473447627 0.000000e+00 1247.0
15 TraesCS5D01G295600 chr5B 87.936 1061 88 20 1180 2228 473468051 473467019 0.000000e+00 1214.0
16 TraesCS5D01G295600 chr5B 86.687 969 59 37 258 1183 473449688 473448747 0.000000e+00 1011.0
17 TraesCS5D01G295600 chr5B 85.818 966 51 42 257 1183 473469026 473468108 0.000000e+00 946.0
18 TraesCS5D01G295600 chr5B 86.118 389 43 8 1288 1665 473625833 473625445 2.950000e-110 409.0
19 TraesCS5D01G295600 chr5B 86.090 266 30 5 1407 1665 473454935 473454670 2.410000e-71 279.0
20 TraesCS5D01G295600 chr5B 86.719 256 23 5 4 259 473508044 473507800 1.120000e-69 274.0
21 TraesCS5D01G295600 chr5B 88.966 145 9 2 49 193 473450004 473449867 4.210000e-39 172.0
22 TraesCS5D01G295600 chr1B 90.693 462 27 4 2731 3177 292420337 292420797 4.530000e-168 601.0
23 TraesCS5D01G295600 chr1B 93.074 231 8 4 2955 3177 292346272 292346502 6.570000e-87 331.0
24 TraesCS5D01G295600 chr1B 91.111 45 4 0 2803 2847 259972310 259972266 9.520000e-06 62.1
25 TraesCS5D01G295600 chr4B 90.393 458 33 4 2731 3177 161491215 161490758 2.730000e-165 592.0
26 TraesCS5D01G295600 chr4B 88.889 54 6 0 2728 2781 476486991 476486938 2.050000e-07 67.6
27 TraesCS5D01G295600 chrUn 91.489 329 21 4 2731 3052 49591279 49590951 2.250000e-121 446.0
28 TraesCS5D01G295600 chrUn 95.302 149 5 2 3029 3177 49590943 49590797 5.300000e-58 235.0
29 TraesCS5D01G295600 chr4A 88.983 354 21 5 2827 3177 99779904 99779566 3.790000e-114 422.0
30 TraesCS5D01G295600 chr3A 92.617 149 10 1 3029 3177 555514379 555514232 2.480000e-51 213.0
31 TraesCS5D01G295600 chr1A 84.181 177 26 1 2252 2428 503464948 503465122 1.520000e-38 171.0
32 TraesCS5D01G295600 chr4D 76.737 331 57 9 2253 2580 366690084 366689771 1.960000e-37 167.0
33 TraesCS5D01G295600 chr2D 82.803 157 18 2 2580 2730 524464768 524464921 7.150000e-27 132.0
34 TraesCS5D01G295600 chr2B 80.982 163 22 5 2573 2729 677317626 677317467 1.550000e-23 121.0
35 TraesCS5D01G295600 chr2B 82.418 91 16 0 2321 2411 397609833 397609743 2.630000e-11 80.5
36 TraesCS5D01G295600 chr2B 77.049 122 24 4 2731 2850 108526286 108526167 2.050000e-07 67.6
37 TraesCS5D01G295600 chr3B 76.860 121 26 2 2731 2850 668466394 668466275 2.050000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G295600 chr5D 393606607 393609783 3176 True 5867 5867 100.000000 1 3177 1 chr5D.!!$R2 3176
1 TraesCS5D01G295600 chr5D 393568952 393569984 1032 True 1284 1284 89.323000 1216 2244 1 chr5D.!!$R1 1028
2 TraesCS5D01G295600 chr5D 393711579 393712153 574 True 734 734 89.792000 1274 1847 1 chr5D.!!$R3 573
3 TraesCS5D01G295600 chr5D 393636429 393638112 1683 True 296 396 86.330500 8 630 2 chr5D.!!$R5 622
4 TraesCS5D01G295600 chr5A 495358080 495361093 3013 True 2128 3827 95.580000 4 2730 2 chr5A.!!$R6 2726
5 TraesCS5D01G295600 chr5A 495338900 495339880 980 True 1303 1303 90.789000 1270 2244 1 chr5A.!!$R1 974
6 TraesCS5D01G295600 chr5B 473290935 473291941 1006 True 1325 1325 90.864000 1273 2251 1 chr5B.!!$R1 978
7 TraesCS5D01G295600 chr5B 473467019 473469026 2007 True 1080 1214 86.877000 257 2228 2 chr5B.!!$R6 1971
8 TraesCS5D01G295600 chr5B 473447627 473450004 2377 True 810 1247 87.889333 49 2252 3 chr5B.!!$R5 2203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 1830 2.113774 CCTGGTTCACCTGCTGCA 59.886 61.111 0.88 0.88 36.82 4.41 F
1488 2887 0.888619 CTAGGTCCACGTCAGCTTCA 59.111 55.000 1.27 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 2889 0.179127 CGATCTTCTTCCTGCGAGCA 60.179 55.0 0.0 0.0 0.0 4.26 R
2994 4473 0.034059 CGGGCCAGTGGATGTCTATC 59.966 60.0 15.2 0.0 0.0 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 3.493129 TGTTGTGCTTCTTTGCTAGTACG 59.507 43.478 0.00 0.00 30.72 3.67
217 218 3.939740 AACACCATGACTCCTATGCAT 57.060 42.857 3.79 3.79 0.00 3.96
470 1720 4.059459 GCAGTTGTCGTCGCCGTG 62.059 66.667 0.00 0.00 35.01 4.94
472 1722 3.908081 AGTTGTCGTCGCCGTGGT 61.908 61.111 0.00 0.00 35.01 4.16
580 1830 2.113774 CCTGGTTCACCTGCTGCA 59.886 61.111 0.88 0.88 36.82 4.41
822 2096 2.703798 TATATAGACGCGGCGGGCC 61.704 63.158 27.37 13.78 38.94 5.80
948 2248 4.812476 TGTCAGAATCGGGCCGCG 62.812 66.667 23.83 0.00 0.00 6.46
949 2249 4.814294 GTCAGAATCGGGCCGCGT 62.814 66.667 23.83 11.53 0.00 6.01
1089 2404 1.795768 TTGCACGCTCTCGATCTTTT 58.204 45.000 0.00 0.00 39.41 2.27
1260 2646 3.812053 CCTTGCTCGCTTATAATCAGCTT 59.188 43.478 10.27 0.00 34.88 3.74
1336 2729 3.183793 TGGTGATGTCTGGATCGATTG 57.816 47.619 0.00 0.00 0.00 2.67
1488 2887 0.888619 CTAGGTCCACGTCAGCTTCA 59.111 55.000 1.27 0.00 0.00 3.02
1490 2889 0.687354 AGGTCCACGTCAGCTTCATT 59.313 50.000 0.00 0.00 0.00 2.57
1592 2991 2.057830 CTACAGCCACCACCACTCA 58.942 57.895 0.00 0.00 0.00 3.41
1753 3176 5.067954 ACGCCTATCCTAACTTGTGTTTTT 58.932 37.500 0.00 0.00 37.59 1.94
1866 3289 1.371183 CCACTTGACGGGAGCTTCA 59.629 57.895 0.00 0.00 0.00 3.02
1911 3334 1.564348 ACGAAGGCCAGGGTTTCATAT 59.436 47.619 5.01 0.00 0.00 1.78
1936 3359 2.364324 TCACGAACCTGCTTGAGTTACT 59.636 45.455 0.00 0.00 0.00 2.24
2141 3614 4.553547 GCTAGCGAGAAGTTAATGCAATGG 60.554 45.833 0.00 0.00 0.00 3.16
2150 3623 8.133024 AGAAGTTAATGCAATGGGTTCAATTA 57.867 30.769 0.00 0.00 0.00 1.40
2190 3663 3.815809 TGTATGGTAATAGCAAGGCCAC 58.184 45.455 5.01 0.00 31.47 5.01
2201 3676 1.645034 CAAGGCCACGTATCAGACTG 58.355 55.000 5.01 0.00 0.00 3.51
2202 3677 1.204704 CAAGGCCACGTATCAGACTGA 59.795 52.381 7.80 7.80 0.00 3.41
2203 3678 0.818296 AGGCCACGTATCAGACTGAC 59.182 55.000 7.47 0.00 0.00 3.51
2253 3732 9.620660 ATTAAACTTGCGACAACCTTTTATAAG 57.379 29.630 0.00 0.00 0.00 1.73
2288 3767 1.080366 ACCACTTTCGCGCGTCATA 60.080 52.632 30.98 7.39 0.00 2.15
2299 3778 1.545759 CGCGTCATAGCTCTCGAAAA 58.454 50.000 0.00 0.00 34.40 2.29
2312 3791 5.940470 AGCTCTCGAAAAACCATCACTTTAT 59.060 36.000 0.00 0.00 0.00 1.40
2333 3812 7.630470 TTATAAAACTTGACATTTTGCACCG 57.370 32.000 0.00 0.00 31.79 4.94
2452 3931 2.329379 CGCTATCGCCCATTAACTCTC 58.671 52.381 0.00 0.00 0.00 3.20
2464 3943 0.167470 TAACTCTCGTGTCCGAAGCG 59.833 55.000 0.00 0.00 43.69 4.68
2526 4005 4.058731 TCTCCCTCTATCCCTCTTCTCTT 58.941 47.826 0.00 0.00 0.00 2.85
2533 4012 2.161486 CCCTCTTCTCTTTCGCGCG 61.161 63.158 26.76 26.76 0.00 6.86
2574 4053 2.917751 GGATCCATCGGCGAGGGA 60.918 66.667 40.28 40.28 46.60 4.20
2575 4054 2.653702 GATCCATCGGCGAGGGAG 59.346 66.667 40.24 18.98 45.75 4.30
2576 4055 2.123251 ATCCATCGGCGAGGGAGT 60.123 61.111 40.24 27.64 45.75 3.85
2577 4056 2.427540 GATCCATCGGCGAGGGAGTG 62.428 65.000 40.24 22.55 45.75 3.51
2578 4057 4.227134 CCATCGGCGAGGGAGTGG 62.227 72.222 34.87 22.69 35.26 4.00
2596 4075 1.303317 GTCGACAAACTGGCCCCAT 60.303 57.895 11.55 0.00 0.00 4.00
2603 4082 2.497792 AAACTGGCCCCATGATGCGA 62.498 55.000 0.00 0.00 0.00 5.10
2650 4129 0.532862 CTTGTGCGTGTCTCCACCTT 60.533 55.000 0.00 0.00 38.41 3.50
2651 4130 0.531974 TTGTGCGTGTCTCCACCTTC 60.532 55.000 0.00 0.00 38.41 3.46
2652 4131 1.069090 GTGCGTGTCTCCACCTTCA 59.931 57.895 0.00 0.00 38.41 3.02
2653 4132 0.320771 GTGCGTGTCTCCACCTTCAT 60.321 55.000 0.00 0.00 38.41 2.57
2654 4133 0.396435 TGCGTGTCTCCACCTTCATT 59.604 50.000 0.00 0.00 38.41 2.57
2655 4134 1.202758 TGCGTGTCTCCACCTTCATTT 60.203 47.619 0.00 0.00 38.41 2.32
2656 4135 1.197721 GCGTGTCTCCACCTTCATTTG 59.802 52.381 0.00 0.00 38.41 2.32
2657 4136 2.494059 CGTGTCTCCACCTTCATTTGT 58.506 47.619 0.00 0.00 38.41 2.83
2658 4137 2.878406 CGTGTCTCCACCTTCATTTGTT 59.122 45.455 0.00 0.00 38.41 2.83
2659 4138 3.303990 CGTGTCTCCACCTTCATTTGTTG 60.304 47.826 0.00 0.00 38.41 3.33
2660 4139 2.622942 TGTCTCCACCTTCATTTGTTGC 59.377 45.455 0.00 0.00 0.00 4.17
2661 4140 2.887152 GTCTCCACCTTCATTTGTTGCT 59.113 45.455 0.00 0.00 0.00 3.91
2671 4150 2.297880 TCATTTGTTGCTGCATCTGCTT 59.702 40.909 1.84 0.00 42.66 3.91
2738 4217 4.447138 AGACTCCATCTCCCACTACTAG 57.553 50.000 0.00 0.00 28.16 2.57
2739 4218 3.139397 AGACTCCATCTCCCACTACTAGG 59.861 52.174 0.00 0.00 28.16 3.02
2740 4219 3.132056 ACTCCATCTCCCACTACTAGGA 58.868 50.000 0.00 0.00 0.00 2.94
2741 4220 3.532232 ACTCCATCTCCCACTACTAGGAA 59.468 47.826 0.00 0.00 0.00 3.36
2742 4221 4.016479 ACTCCATCTCCCACTACTAGGAAA 60.016 45.833 0.00 0.00 0.00 3.13
2743 4222 4.955335 TCCATCTCCCACTACTAGGAAAA 58.045 43.478 0.00 0.00 0.00 2.29
2744 4223 4.715297 TCCATCTCCCACTACTAGGAAAAC 59.285 45.833 0.00 0.00 0.00 2.43
2745 4224 4.441634 CCATCTCCCACTACTAGGAAAACG 60.442 50.000 0.00 0.00 0.00 3.60
2746 4225 2.494870 TCTCCCACTACTAGGAAAACGC 59.505 50.000 0.00 0.00 0.00 4.84
2747 4226 2.496470 CTCCCACTACTAGGAAAACGCT 59.504 50.000 0.00 0.00 0.00 5.07
2748 4227 2.901839 TCCCACTACTAGGAAAACGCTT 59.098 45.455 0.00 0.00 0.00 4.68
2749 4228 4.088634 TCCCACTACTAGGAAAACGCTTA 58.911 43.478 0.00 0.00 0.00 3.09
2750 4229 4.713321 TCCCACTACTAGGAAAACGCTTAT 59.287 41.667 0.00 0.00 0.00 1.73
2751 4230 5.893255 TCCCACTACTAGGAAAACGCTTATA 59.107 40.000 0.00 0.00 0.00 0.98
2752 4231 6.040166 TCCCACTACTAGGAAAACGCTTATAG 59.960 42.308 0.00 0.00 0.00 1.31
2753 4232 6.040166 CCCACTACTAGGAAAACGCTTATAGA 59.960 42.308 0.00 0.00 0.00 1.98
2754 4233 7.255871 CCCACTACTAGGAAAACGCTTATAGAT 60.256 40.741 0.00 0.00 0.00 1.98
2755 4234 8.790718 CCACTACTAGGAAAACGCTTATAGATA 58.209 37.037 0.00 0.00 0.00 1.98
2786 4265 3.545366 AGTAGGGCTAGTTTAAGCAGC 57.455 47.619 0.00 5.57 44.64 5.25
2787 4266 2.838202 AGTAGGGCTAGTTTAAGCAGCA 59.162 45.455 12.92 0.00 44.64 4.41
2788 4267 2.409948 AGGGCTAGTTTAAGCAGCAG 57.590 50.000 12.92 0.56 44.64 4.24
2789 4268 0.735471 GGGCTAGTTTAAGCAGCAGC 59.265 55.000 12.92 0.00 44.64 5.25
2805 4284 1.841450 CAGCGCTACTGCTAAGTACC 58.159 55.000 10.99 0.00 45.23 3.34
2806 4285 1.134367 CAGCGCTACTGCTAAGTACCA 59.866 52.381 10.99 0.00 45.23 3.25
2807 4286 1.405821 AGCGCTACTGCTAAGTACCAG 59.594 52.381 8.99 0.00 45.14 4.00
2808 4287 1.134560 GCGCTACTGCTAAGTACCAGT 59.865 52.381 0.00 7.51 44.02 4.00
2809 4288 2.357009 GCGCTACTGCTAAGTACCAGTA 59.643 50.000 0.00 8.74 42.02 2.74
2813 4292 1.134560 ACTGCTAAGTACCAGTAGCGC 59.865 52.381 0.00 0.00 44.70 5.92
2814 4293 1.405821 CTGCTAAGTACCAGTAGCGCT 59.594 52.381 17.26 17.26 44.70 5.92
2815 4294 1.134367 TGCTAAGTACCAGTAGCGCTG 59.866 52.381 22.90 5.37 44.70 5.18
2824 4303 2.309528 CAGTAGCGCTGGGAATAACA 57.690 50.000 22.90 0.00 41.42 2.41
2825 4304 2.627945 CAGTAGCGCTGGGAATAACAA 58.372 47.619 22.90 0.00 41.42 2.83
2826 4305 2.609459 CAGTAGCGCTGGGAATAACAAG 59.391 50.000 22.90 1.22 41.42 3.16
2827 4306 1.330829 GTAGCGCTGGGAATAACAAGC 59.669 52.381 22.90 0.00 0.00 4.01
2828 4307 1.062525 GCGCTGGGAATAACAAGCG 59.937 57.895 10.38 10.38 46.69 4.68
2829 4308 1.062525 CGCTGGGAATAACAAGCGC 59.937 57.895 0.00 0.00 38.87 5.92
2830 4309 1.369091 CGCTGGGAATAACAAGCGCT 61.369 55.000 2.64 2.64 38.87 5.92
2831 4310 1.663695 GCTGGGAATAACAAGCGCTA 58.336 50.000 12.05 0.00 0.00 4.26
2832 4311 1.330829 GCTGGGAATAACAAGCGCTAC 59.669 52.381 12.05 0.00 0.00 3.58
2833 4312 2.906354 CTGGGAATAACAAGCGCTACT 58.094 47.619 12.05 0.00 0.00 2.57
2834 4313 2.609459 CTGGGAATAACAAGCGCTACTG 59.391 50.000 12.05 9.38 0.00 2.74
2835 4314 1.330829 GGGAATAACAAGCGCTACTGC 59.669 52.381 12.05 0.00 0.00 4.40
2837 4316 3.454375 GGAATAACAAGCGCTACTGCTA 58.546 45.455 12.05 1.88 46.60 3.49
2838 4317 3.245519 GGAATAACAAGCGCTACTGCTAC 59.754 47.826 12.05 0.49 46.60 3.58
2839 4318 3.520290 ATAACAAGCGCTACTGCTACA 57.480 42.857 12.05 0.00 46.60 2.74
2840 4319 2.163818 AACAAGCGCTACTGCTACAA 57.836 45.000 12.05 0.00 46.60 2.41
2841 4320 2.386661 ACAAGCGCTACTGCTACAAT 57.613 45.000 12.05 0.00 46.60 2.71
2842 4321 2.699954 ACAAGCGCTACTGCTACAATT 58.300 42.857 12.05 0.00 46.60 2.32
2843 4322 3.074412 ACAAGCGCTACTGCTACAATTT 58.926 40.909 12.05 0.00 46.60 1.82
2844 4323 4.250464 ACAAGCGCTACTGCTACAATTTA 58.750 39.130 12.05 0.00 46.60 1.40
2845 4324 4.330074 ACAAGCGCTACTGCTACAATTTAG 59.670 41.667 12.05 0.00 46.60 1.85
2846 4325 2.866762 AGCGCTACTGCTACAATTTAGC 59.133 45.455 8.99 10.77 45.14 3.09
2847 4326 2.607635 GCGCTACTGCTACAATTTAGCA 59.392 45.455 16.36 16.36 47.00 3.49
2852 4331 1.737838 TGCTACAATTTAGCAGCGCT 58.262 45.000 2.64 2.64 44.65 5.92
2853 4332 1.398041 TGCTACAATTTAGCAGCGCTG 59.602 47.619 32.83 32.83 44.65 5.18
2854 4333 1.268234 GCTACAATTTAGCAGCGCTGG 60.268 52.381 36.47 21.03 40.10 4.85
2855 4334 2.009774 CTACAATTTAGCAGCGCTGGT 58.990 47.619 39.99 39.99 40.10 4.00
2856 4335 1.247567 ACAATTTAGCAGCGCTGGTT 58.752 45.000 42.66 25.46 40.10 3.67
2857 4336 2.432444 ACAATTTAGCAGCGCTGGTTA 58.568 42.857 42.66 32.99 40.10 2.85
2858 4337 2.420022 ACAATTTAGCAGCGCTGGTTAG 59.580 45.455 42.66 28.43 40.10 2.34
2859 4338 1.668419 ATTTAGCAGCGCTGGTTAGG 58.332 50.000 42.66 16.69 40.10 2.69
2860 4339 0.392461 TTTAGCAGCGCTGGTTAGGG 60.392 55.000 42.66 15.90 40.10 3.53
2861 4340 1.550130 TTAGCAGCGCTGGTTAGGGT 61.550 55.000 42.66 22.22 40.10 4.34
2862 4341 2.238847 TAGCAGCGCTGGTTAGGGTG 62.239 60.000 42.66 15.21 40.10 4.61
2863 4342 2.436646 CAGCGCTGGTTAGGGTGG 60.437 66.667 29.88 0.00 38.97 4.61
2864 4343 2.606519 AGCGCTGGTTAGGGTGGA 60.607 61.111 10.39 0.00 38.97 4.02
2865 4344 2.436115 GCGCTGGTTAGGGTGGAC 60.436 66.667 0.00 0.00 38.97 4.02
2866 4345 2.125673 CGCTGGTTAGGGTGGACG 60.126 66.667 0.00 0.00 32.59 4.79
2867 4346 2.267961 GCTGGTTAGGGTGGACGG 59.732 66.667 0.00 0.00 0.00 4.79
2868 4347 2.267961 CTGGTTAGGGTGGACGGC 59.732 66.667 0.00 0.00 0.00 5.68
2869 4348 3.659089 CTGGTTAGGGTGGACGGCG 62.659 68.421 4.80 4.80 0.00 6.46
2871 4350 4.078516 GTTAGGGTGGACGGCGCT 62.079 66.667 6.90 0.00 0.00 5.92
2872 4351 2.362760 TTAGGGTGGACGGCGCTA 60.363 61.111 6.90 0.00 0.00 4.26
2873 4352 2.713967 TTAGGGTGGACGGCGCTAC 61.714 63.158 6.90 8.08 32.35 3.58
2874 4353 3.650298 TAGGGTGGACGGCGCTACT 62.650 63.158 6.90 0.00 0.00 2.57
2875 4354 4.814294 GGGTGGACGGCGCTACTG 62.814 72.222 6.90 0.00 0.00 2.74
2876 4355 4.065281 GGTGGACGGCGCTACTGT 62.065 66.667 6.90 0.34 42.04 3.55
2877 4356 2.048503 GTGGACGGCGCTACTGTT 60.049 61.111 6.90 0.00 38.28 3.16
2878 4357 1.213537 GTGGACGGCGCTACTGTTA 59.786 57.895 6.90 0.00 38.28 2.41
2879 4358 0.801067 GTGGACGGCGCTACTGTTAG 60.801 60.000 6.90 0.00 38.28 2.34
2880 4359 0.961857 TGGACGGCGCTACTGTTAGA 60.962 55.000 6.90 0.00 38.28 2.10
2881 4360 0.384669 GGACGGCGCTACTGTTAGAT 59.615 55.000 6.90 0.00 38.28 1.98
2882 4361 1.478137 GACGGCGCTACTGTTAGATG 58.522 55.000 6.90 0.00 38.28 2.90
2883 4362 0.815734 ACGGCGCTACTGTTAGATGT 59.184 50.000 6.90 0.00 32.29 3.06
2884 4363 1.200483 CGGCGCTACTGTTAGATGTG 58.800 55.000 7.64 0.00 0.00 3.21
2885 4364 0.931005 GGCGCTACTGTTAGATGTGC 59.069 55.000 7.64 0.00 0.00 4.57
2886 4365 0.931005 GCGCTACTGTTAGATGTGCC 59.069 55.000 0.00 0.00 0.00 5.01
2887 4366 1.739035 GCGCTACTGTTAGATGTGCCA 60.739 52.381 0.00 0.00 0.00 4.92
2888 4367 1.927174 CGCTACTGTTAGATGTGCCAC 59.073 52.381 0.00 0.00 0.00 5.01
2889 4368 2.673893 CGCTACTGTTAGATGTGCCACA 60.674 50.000 0.00 0.00 0.00 4.17
2890 4369 2.673368 GCTACTGTTAGATGTGCCACAC 59.327 50.000 0.00 0.00 34.56 3.82
2891 4370 2.185004 ACTGTTAGATGTGCCACACC 57.815 50.000 0.00 0.00 32.73 4.16
2892 4371 1.419762 ACTGTTAGATGTGCCACACCA 59.580 47.619 0.00 0.00 32.73 4.17
2893 4372 1.806542 CTGTTAGATGTGCCACACCAC 59.193 52.381 0.00 0.00 32.73 4.16
2894 4373 1.419762 TGTTAGATGTGCCACACCACT 59.580 47.619 0.00 2.97 36.68 4.00
2895 4374 2.076863 GTTAGATGTGCCACACCACTC 58.923 52.381 0.00 0.00 36.68 3.51
2896 4375 0.246360 TAGATGTGCCACACCACTCG 59.754 55.000 0.00 0.00 36.68 4.18
2897 4376 2.032528 ATGTGCCACACCACTCGG 59.967 61.111 0.00 0.00 36.68 4.63
2898 4377 4.927782 TGTGCCACACCACTCGGC 62.928 66.667 0.00 0.00 46.43 5.54
2902 4381 4.704833 CCACACCACTCGGCCAGG 62.705 72.222 2.24 0.52 34.57 4.45
2903 4382 3.941188 CACACCACTCGGCCAGGT 61.941 66.667 2.24 1.28 35.65 4.00
2904 4383 3.626924 ACACCACTCGGCCAGGTC 61.627 66.667 2.24 0.00 32.15 3.85
2905 4384 3.625897 CACCACTCGGCCAGGTCA 61.626 66.667 2.24 0.00 32.15 4.02
2906 4385 2.847234 ACCACTCGGCCAGGTCAA 60.847 61.111 2.24 0.00 34.57 3.18
2907 4386 2.046892 CCACTCGGCCAGGTCAAG 60.047 66.667 2.24 0.00 0.00 3.02
2908 4387 2.046892 CACTCGGCCAGGTCAAGG 60.047 66.667 2.24 0.00 0.00 3.61
2909 4388 3.322466 ACTCGGCCAGGTCAAGGG 61.322 66.667 2.24 0.00 0.00 3.95
2910 4389 3.003173 CTCGGCCAGGTCAAGGGA 61.003 66.667 2.24 0.00 0.00 4.20
2911 4390 2.285368 TCGGCCAGGTCAAGGGAT 60.285 61.111 2.24 0.00 0.00 3.85
2912 4391 1.002403 TCGGCCAGGTCAAGGGATA 59.998 57.895 2.24 0.00 0.00 2.59
2913 4392 1.146263 CGGCCAGGTCAAGGGATAC 59.854 63.158 2.24 0.00 0.00 2.24
2914 4393 1.338136 CGGCCAGGTCAAGGGATACT 61.338 60.000 2.24 0.00 0.00 2.12
2915 4394 1.802553 GGCCAGGTCAAGGGATACTA 58.197 55.000 0.00 0.00 0.00 1.82
2916 4395 1.694696 GGCCAGGTCAAGGGATACTAG 59.305 57.143 0.00 0.00 0.00 2.57
2917 4396 1.070914 GCCAGGTCAAGGGATACTAGC 59.929 57.143 0.00 0.00 0.00 3.42
2918 4397 2.398588 CCAGGTCAAGGGATACTAGCA 58.601 52.381 0.00 0.00 0.00 3.49
2919 4398 2.366916 CCAGGTCAAGGGATACTAGCAG 59.633 54.545 0.00 0.00 0.00 4.24
2920 4399 2.043227 AGGTCAAGGGATACTAGCAGC 58.957 52.381 0.00 0.00 0.00 5.25
2921 4400 1.269831 GGTCAAGGGATACTAGCAGCG 60.270 57.143 0.00 0.00 0.00 5.18
2922 4401 0.389391 TCAAGGGATACTAGCAGCGC 59.611 55.000 0.00 0.00 0.00 5.92
2923 4402 0.390860 CAAGGGATACTAGCAGCGCT 59.609 55.000 2.64 2.64 43.41 5.92
2924 4403 1.123928 AAGGGATACTAGCAGCGCTT 58.876 50.000 7.50 4.79 40.44 4.68
2925 4404 0.390860 AGGGATACTAGCAGCGCTTG 59.609 55.000 7.50 4.59 40.44 4.01
2926 4405 0.601311 GGGATACTAGCAGCGCTTGG 60.601 60.000 7.50 0.00 40.44 3.61
2927 4406 0.389391 GGATACTAGCAGCGCTTGGA 59.611 55.000 7.50 4.12 40.44 3.53
2928 4407 1.202533 GGATACTAGCAGCGCTTGGAA 60.203 52.381 7.50 0.00 40.44 3.53
2929 4408 1.861575 GATACTAGCAGCGCTTGGAAC 59.138 52.381 7.50 0.00 40.44 3.62
2930 4409 0.108329 TACTAGCAGCGCTTGGAACC 60.108 55.000 7.50 0.00 40.44 3.62
2931 4410 1.078848 CTAGCAGCGCTTGGAACCT 60.079 57.895 7.50 0.00 40.44 3.50
2932 4411 0.175760 CTAGCAGCGCTTGGAACCTA 59.824 55.000 7.50 0.92 40.44 3.08
2933 4412 0.108329 TAGCAGCGCTTGGAACCTAC 60.108 55.000 7.50 0.00 40.44 3.18
2934 4413 2.740714 GCAGCGCTTGGAACCTACG 61.741 63.158 7.50 0.00 0.00 3.51
2937 4416 3.474806 CGCTTGGAACCTACGCAG 58.525 61.111 0.00 0.00 0.00 5.18
2938 4417 2.740714 CGCTTGGAACCTACGCAGC 61.741 63.158 0.00 0.00 0.00 5.25
2939 4418 2.740714 GCTTGGAACCTACGCAGCG 61.741 63.158 14.82 14.82 0.00 5.18
2940 4419 2.740714 CTTGGAACCTACGCAGCGC 61.741 63.158 16.61 0.00 0.00 5.92
2941 4420 3.234630 TTGGAACCTACGCAGCGCT 62.235 57.895 16.61 2.64 0.00 5.92
2942 4421 1.879737 TTGGAACCTACGCAGCGCTA 61.880 55.000 16.61 5.83 0.00 4.26
2943 4422 1.877165 GGAACCTACGCAGCGCTAC 60.877 63.158 16.61 2.42 0.00 3.58
2944 4423 1.153901 GAACCTACGCAGCGCTACA 60.154 57.895 16.61 0.00 0.00 2.74
2945 4424 0.734942 GAACCTACGCAGCGCTACAA 60.735 55.000 16.61 0.00 0.00 2.41
2946 4425 1.012486 AACCTACGCAGCGCTACAAC 61.012 55.000 16.61 0.00 0.00 3.32
2947 4426 1.153823 CCTACGCAGCGCTACAACT 60.154 57.895 16.61 0.00 0.00 3.16
2948 4427 0.099968 CCTACGCAGCGCTACAACTA 59.900 55.000 16.61 0.00 0.00 2.24
2949 4428 1.468565 CCTACGCAGCGCTACAACTAA 60.469 52.381 16.61 0.00 0.00 2.24
2950 4429 2.256174 CTACGCAGCGCTACAACTAAA 58.744 47.619 16.61 0.00 0.00 1.85
2951 4430 1.068474 ACGCAGCGCTACAACTAAAG 58.932 50.000 16.61 0.00 0.00 1.85
2952 4431 0.247301 CGCAGCGCTACAACTAAAGC 60.247 55.000 10.99 4.83 35.33 3.51
2953 4432 0.796312 GCAGCGCTACAACTAAAGCA 59.204 50.000 10.99 0.00 38.70 3.91
2954 4433 1.196808 GCAGCGCTACAACTAAAGCAA 59.803 47.619 10.99 0.00 38.70 3.91
2955 4434 2.159517 GCAGCGCTACAACTAAAGCAAT 60.160 45.455 10.99 0.00 38.70 3.56
2956 4435 3.063452 GCAGCGCTACAACTAAAGCAATA 59.937 43.478 10.99 0.00 38.70 1.90
2957 4436 4.783450 GCAGCGCTACAACTAAAGCAATAG 60.783 45.833 10.99 0.00 38.70 1.73
2958 4437 3.309954 AGCGCTACAACTAAAGCAATAGC 59.690 43.478 8.99 0.00 38.70 2.97
2959 4438 3.063452 GCGCTACAACTAAAGCAATAGCA 59.937 43.478 0.00 0.00 45.49 3.49
2960 4439 4.578601 CGCTACAACTAAAGCAATAGCAC 58.421 43.478 0.00 0.00 45.49 4.40
2961 4440 4.330074 CGCTACAACTAAAGCAATAGCACT 59.670 41.667 0.00 0.00 45.49 4.40
2962 4441 5.518847 CGCTACAACTAAAGCAATAGCACTA 59.481 40.000 0.00 0.00 45.49 2.74
2963 4442 6.035650 CGCTACAACTAAAGCAATAGCACTAA 59.964 38.462 0.00 0.00 45.49 2.24
2964 4443 7.180748 GCTACAACTAAAGCAATAGCACTAAC 58.819 38.462 0.00 0.00 45.49 2.34
2965 4444 6.165659 ACAACTAAAGCAATAGCACTAACG 57.834 37.500 0.00 0.00 45.49 3.18
2966 4445 4.859629 ACTAAAGCAATAGCACTAACGC 57.140 40.909 0.00 0.00 45.49 4.84
2967 4446 4.504858 ACTAAAGCAATAGCACTAACGCT 58.495 39.130 0.00 0.00 45.49 5.07
2968 4447 3.747099 AAAGCAATAGCACTAACGCTG 57.253 42.857 5.31 0.00 43.68 5.18
2969 4448 2.386661 AGCAATAGCACTAACGCTGT 57.613 45.000 4.04 0.00 43.68 4.40
2970 4449 2.699954 AGCAATAGCACTAACGCTGTT 58.300 42.857 4.04 0.00 43.22 3.16
2971 4450 3.074412 AGCAATAGCACTAACGCTGTTT 58.926 40.909 4.04 0.00 40.85 2.83
2972 4451 3.120199 AGCAATAGCACTAACGCTGTTTG 60.120 43.478 4.04 0.00 40.85 2.93
2973 4452 3.364964 GCAATAGCACTAACGCTGTTTGT 60.365 43.478 0.00 1.81 40.85 2.83
2974 4453 4.394795 CAATAGCACTAACGCTGTTTGTC 58.605 43.478 5.80 3.25 40.85 3.18
2975 4454 0.859232 AGCACTAACGCTGTTTGTCG 59.141 50.000 5.80 0.00 41.85 4.35
2976 4455 0.721483 GCACTAACGCTGTTTGTCGC 60.721 55.000 5.80 8.80 0.00 5.19
2977 4456 0.110823 CACTAACGCTGTTTGTCGCC 60.111 55.000 5.80 0.00 0.00 5.54
2978 4457 1.226030 ACTAACGCTGTTTGTCGCCC 61.226 55.000 0.00 0.00 0.00 6.13
2979 4458 1.908066 CTAACGCTGTTTGTCGCCCC 61.908 60.000 0.00 0.00 0.00 5.80
2995 4474 4.435436 CCGCGCTACAGCTGTGGA 62.435 66.667 31.87 11.83 43.01 4.02
2996 4475 2.202797 CGCGCTACAGCTGTGGAT 60.203 61.111 31.87 7.12 39.32 3.41
2997 4476 1.065764 CGCGCTACAGCTGTGGATA 59.934 57.895 31.87 10.66 39.32 2.59
2998 4477 0.936764 CGCGCTACAGCTGTGGATAG 60.937 60.000 31.87 20.53 39.32 2.08
2999 4478 0.385751 GCGCTACAGCTGTGGATAGA 59.614 55.000 31.87 9.49 39.32 1.98
3000 4479 1.866063 GCGCTACAGCTGTGGATAGAC 60.866 57.143 31.87 13.69 39.32 2.59
3001 4480 1.405463 CGCTACAGCTGTGGATAGACA 59.595 52.381 31.87 7.95 39.32 3.41
3002 4481 2.035193 CGCTACAGCTGTGGATAGACAT 59.965 50.000 31.87 2.78 39.32 3.06
3003 4482 3.648009 GCTACAGCTGTGGATAGACATC 58.352 50.000 31.87 9.22 38.21 3.06
3004 4483 3.553922 GCTACAGCTGTGGATAGACATCC 60.554 52.174 31.87 8.51 43.56 3.51
3005 4484 6.009010 GCTACAGCTGTGGATAGACATCCA 62.009 50.000 31.87 5.68 46.92 3.41
3013 4492 0.034059 GATAGACATCCACTGGCCCG 59.966 60.000 0.00 0.00 30.62 6.13
3014 4493 0.398522 ATAGACATCCACTGGCCCGA 60.399 55.000 0.00 0.00 30.62 5.14
3015 4494 1.327690 TAGACATCCACTGGCCCGAC 61.328 60.000 0.00 0.00 30.62 4.79
3016 4495 2.607750 ACATCCACTGGCCCGACT 60.608 61.111 0.00 0.00 0.00 4.18
3017 4496 2.124983 CATCCACTGGCCCGACTG 60.125 66.667 0.00 0.00 0.00 3.51
3018 4497 3.402681 ATCCACTGGCCCGACTGG 61.403 66.667 0.00 0.00 37.09 4.00
3027 4506 3.775654 CCCGACTGGCCTCCTCAC 61.776 72.222 3.32 0.00 0.00 3.51
3028 4507 3.775654 CCGACTGGCCTCCTCACC 61.776 72.222 3.32 0.00 0.00 4.02
3029 4508 2.681778 CGACTGGCCTCCTCACCT 60.682 66.667 3.32 0.00 0.00 4.00
3030 4509 2.716017 CGACTGGCCTCCTCACCTC 61.716 68.421 3.32 0.00 0.00 3.85
3031 4510 1.305718 GACTGGCCTCCTCACCTCT 60.306 63.158 3.32 0.00 0.00 3.69
3032 4511 1.305718 ACTGGCCTCCTCACCTCTC 60.306 63.158 3.32 0.00 0.00 3.20
3033 4512 1.001503 CTGGCCTCCTCACCTCTCT 59.998 63.158 3.32 0.00 0.00 3.10
3034 4513 1.000993 TGGCCTCCTCACCTCTCTC 59.999 63.158 3.32 0.00 0.00 3.20
3035 4514 1.309688 GGCCTCCTCACCTCTCTCT 59.690 63.158 0.00 0.00 0.00 3.10
3036 4515 0.755327 GGCCTCCTCACCTCTCTCTC 60.755 65.000 0.00 0.00 0.00 3.20
3037 4516 0.258774 GCCTCCTCACCTCTCTCTCT 59.741 60.000 0.00 0.00 0.00 3.10
3038 4517 1.750682 GCCTCCTCACCTCTCTCTCTC 60.751 61.905 0.00 0.00 0.00 3.20
3039 4518 1.563879 CCTCCTCACCTCTCTCTCTCA 59.436 57.143 0.00 0.00 0.00 3.27
3040 4519 2.175499 CCTCCTCACCTCTCTCTCTCAT 59.825 54.545 0.00 0.00 0.00 2.90
3041 4520 3.373001 CCTCCTCACCTCTCTCTCTCATT 60.373 52.174 0.00 0.00 0.00 2.57
3042 4521 4.280819 CTCCTCACCTCTCTCTCTCATTT 58.719 47.826 0.00 0.00 0.00 2.32
3043 4522 4.277476 TCCTCACCTCTCTCTCTCATTTC 58.723 47.826 0.00 0.00 0.00 2.17
3044 4523 4.017591 TCCTCACCTCTCTCTCTCATTTCT 60.018 45.833 0.00 0.00 0.00 2.52
3045 4524 4.339247 CCTCACCTCTCTCTCTCATTTCTC 59.661 50.000 0.00 0.00 0.00 2.87
3046 4525 5.191727 TCACCTCTCTCTCTCATTTCTCT 57.808 43.478 0.00 0.00 0.00 3.10
3047 4526 5.192927 TCACCTCTCTCTCTCATTTCTCTC 58.807 45.833 0.00 0.00 0.00 3.20
3048 4527 5.044919 TCACCTCTCTCTCTCATTTCTCTCT 60.045 44.000 0.00 0.00 0.00 3.10
3049 4528 5.297776 CACCTCTCTCTCTCATTTCTCTCTC 59.702 48.000 0.00 0.00 0.00 3.20
3050 4529 5.192522 ACCTCTCTCTCTCATTTCTCTCTCT 59.807 44.000 0.00 0.00 0.00 3.10
3051 4530 5.762218 CCTCTCTCTCTCATTTCTCTCTCTC 59.238 48.000 0.00 0.00 0.00 3.20
3052 4531 5.684704 TCTCTCTCTCATTTCTCTCTCTCC 58.315 45.833 0.00 0.00 0.00 3.71
3053 4532 4.792068 TCTCTCTCATTTCTCTCTCTCCC 58.208 47.826 0.00 0.00 0.00 4.30
3054 4533 4.229353 TCTCTCTCATTTCTCTCTCTCCCA 59.771 45.833 0.00 0.00 0.00 4.37
3055 4534 4.277476 TCTCTCATTTCTCTCTCTCCCAC 58.723 47.826 0.00 0.00 0.00 4.61
3056 4535 3.020274 TCTCATTTCTCTCTCTCCCACG 58.980 50.000 0.00 0.00 0.00 4.94
3057 4536 1.478510 TCATTTCTCTCTCTCCCACGC 59.521 52.381 0.00 0.00 0.00 5.34
3058 4537 0.457851 ATTTCTCTCTCTCCCACGCG 59.542 55.000 3.53 3.53 0.00 6.01
3059 4538 0.608308 TTTCTCTCTCTCCCACGCGA 60.608 55.000 15.93 0.00 0.00 5.87
3060 4539 0.394488 TTCTCTCTCTCCCACGCGAT 60.394 55.000 15.93 0.00 0.00 4.58
3061 4540 0.816018 TCTCTCTCTCCCACGCGATC 60.816 60.000 15.93 0.00 0.00 3.69
3062 4541 1.791103 CTCTCTCTCCCACGCGATCC 61.791 65.000 15.93 0.00 0.00 3.36
3063 4542 2.833582 TCTCTCCCACGCGATCCC 60.834 66.667 15.93 0.00 0.00 3.85
3064 4543 3.917760 CTCTCCCACGCGATCCCC 61.918 72.222 15.93 0.00 0.00 4.81
3065 4544 4.770362 TCTCCCACGCGATCCCCA 62.770 66.667 15.93 0.00 0.00 4.96
3066 4545 3.781307 CTCCCACGCGATCCCCAA 61.781 66.667 15.93 0.00 0.00 4.12
3067 4546 3.323286 TCCCACGCGATCCCCAAA 61.323 61.111 15.93 0.00 0.00 3.28
3068 4547 2.124320 CCCACGCGATCCCCAAAT 60.124 61.111 15.93 0.00 0.00 2.32
3069 4548 2.186826 CCCACGCGATCCCCAAATC 61.187 63.158 15.93 0.00 0.00 2.17
3074 4553 3.649986 CGATCCCCAAATCGCCGC 61.650 66.667 0.00 0.00 41.71 6.53
3075 4554 3.287520 GATCCCCAAATCGCCGCC 61.288 66.667 0.00 0.00 0.00 6.13
3076 4555 4.894896 ATCCCCAAATCGCCGCCC 62.895 66.667 0.00 0.00 0.00 6.13
3103 4582 4.432741 GCCTCCCCTGCCAACTCC 62.433 72.222 0.00 0.00 0.00 3.85
3104 4583 4.101448 CCTCCCCTGCCAACTCCG 62.101 72.222 0.00 0.00 0.00 4.63
3105 4584 4.101448 CTCCCCTGCCAACTCCGG 62.101 72.222 0.00 0.00 0.00 5.14
3113 4592 3.764466 CCAACTCCGGCGAGCTCT 61.764 66.667 9.30 0.00 40.03 4.09
3114 4593 2.507992 CAACTCCGGCGAGCTCTG 60.508 66.667 9.30 6.68 40.03 3.35
3115 4594 3.764466 AACTCCGGCGAGCTCTGG 61.764 66.667 9.30 10.95 40.03 3.86
3129 4608 4.529219 CTGGCGCCGTCCAGCATA 62.529 66.667 23.90 0.00 46.11 3.14
3130 4609 4.830765 TGGCGCCGTCCAGCATAC 62.831 66.667 23.90 0.00 34.54 2.39
3133 4612 4.155733 CGCCGTCCAGCATACCCA 62.156 66.667 0.00 0.00 0.00 4.51
3134 4613 2.513897 GCCGTCCAGCATACCCAC 60.514 66.667 0.00 0.00 0.00 4.61
3135 4614 2.202878 CCGTCCAGCATACCCACG 60.203 66.667 0.00 0.00 0.00 4.94
3136 4615 2.202878 CGTCCAGCATACCCACGG 60.203 66.667 0.00 0.00 0.00 4.94
3137 4616 2.513897 GTCCAGCATACCCACGGC 60.514 66.667 0.00 0.00 0.00 5.68
3138 4617 2.687200 TCCAGCATACCCACGGCT 60.687 61.111 0.00 0.00 38.70 5.52
3139 4618 2.203070 CCAGCATACCCACGGCTC 60.203 66.667 0.00 0.00 35.27 4.70
3140 4619 2.203070 CAGCATACCCACGGCTCC 60.203 66.667 0.00 0.00 35.27 4.70
3141 4620 3.480133 AGCATACCCACGGCTCCC 61.480 66.667 0.00 0.00 30.74 4.30
3142 4621 4.564110 GCATACCCACGGCTCCCC 62.564 72.222 0.00 0.00 0.00 4.81
3143 4622 3.873812 CATACCCACGGCTCCCCC 61.874 72.222 0.00 0.00 0.00 5.40
3144 4623 4.103928 ATACCCACGGCTCCCCCT 62.104 66.667 0.00 0.00 0.00 4.79
3145 4624 4.791069 TACCCACGGCTCCCCCTC 62.791 72.222 0.00 0.00 0.00 4.30
3154 4633 3.151022 CTCCCCCTCACCGAGCTC 61.151 72.222 2.73 2.73 0.00 4.09
3155 4634 3.670629 CTCCCCCTCACCGAGCTCT 62.671 68.421 12.85 0.00 0.00 4.09
3156 4635 2.279073 CCCCCTCACCGAGCTCTA 59.721 66.667 12.85 0.00 0.00 2.43
3157 4636 2.128507 CCCCCTCACCGAGCTCTAC 61.129 68.421 12.85 0.00 0.00 2.59
3158 4637 2.128507 CCCCTCACCGAGCTCTACC 61.129 68.421 12.85 0.00 0.00 3.18
3159 4638 1.076632 CCCTCACCGAGCTCTACCT 60.077 63.158 12.85 0.00 0.00 3.08
3160 4639 1.388065 CCCTCACCGAGCTCTACCTG 61.388 65.000 12.85 1.50 0.00 4.00
3161 4640 1.435515 CTCACCGAGCTCTACCTGC 59.564 63.158 12.85 0.00 0.00 4.85
3162 4641 1.000771 TCACCGAGCTCTACCTGCT 60.001 57.895 12.85 0.00 44.24 4.24
3167 4646 4.042251 AGCTCTACCTGCTCCACC 57.958 61.111 0.00 0.00 35.67 4.61
3168 4647 1.390125 AGCTCTACCTGCTCCACCT 59.610 57.895 0.00 0.00 35.67 4.00
3169 4648 0.686112 AGCTCTACCTGCTCCACCTC 60.686 60.000 0.00 0.00 35.67 3.85
3170 4649 0.686112 GCTCTACCTGCTCCACCTCT 60.686 60.000 0.00 0.00 0.00 3.69
3171 4650 1.859302 CTCTACCTGCTCCACCTCTT 58.141 55.000 0.00 0.00 0.00 2.85
3172 4651 1.754226 CTCTACCTGCTCCACCTCTTC 59.246 57.143 0.00 0.00 0.00 2.87
3173 4652 0.457851 CTACCTGCTCCACCTCTTCG 59.542 60.000 0.00 0.00 0.00 3.79
3174 4653 0.039180 TACCTGCTCCACCTCTTCGA 59.961 55.000 0.00 0.00 0.00 3.71
3175 4654 0.616111 ACCTGCTCCACCTCTTCGAT 60.616 55.000 0.00 0.00 0.00 3.59
3176 4655 0.103937 CCTGCTCCACCTCTTCGATC 59.896 60.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.175760 CCGACGGTCATGGAATCTGT 59.824 55.000 5.48 0.00 0.00 3.41
1 2 1.154205 GCCGACGGTCATGGAATCTG 61.154 60.000 16.73 0.00 0.00 2.90
2 3 1.144057 GCCGACGGTCATGGAATCT 59.856 57.895 16.73 0.00 0.00 2.40
235 680 5.593679 TTCTATACCAAAGAACCTCTCCG 57.406 43.478 0.00 0.00 0.00 4.63
675 1943 1.035932 CCATGGGGAGCAAGAGCAAG 61.036 60.000 2.85 0.00 45.49 4.01
921 2221 1.854743 CGATTCTGACATGTACCGCTG 59.145 52.381 0.00 0.00 0.00 5.18
948 2248 0.107459 GATGGAAGCAGGGGAGACAC 60.107 60.000 0.00 0.00 0.00 3.67
949 2249 0.252881 AGATGGAAGCAGGGGAGACA 60.253 55.000 0.00 0.00 0.00 3.41
1017 2327 3.803778 TGTAACGCTATCGATCGTCTACA 59.196 43.478 15.94 16.35 38.03 2.74
1068 2378 1.565305 AAGATCGAGAGCGTGCAATC 58.435 50.000 0.00 0.00 38.98 2.67
1471 2870 0.687354 AATGAAGCTGACGTGGACCT 59.313 50.000 0.00 0.00 0.00 3.85
1488 2887 2.559440 GATCTTCTTCCTGCGAGCAAT 58.441 47.619 0.00 0.00 0.00 3.56
1490 2889 0.179127 CGATCTTCTTCCTGCGAGCA 60.179 55.000 0.00 0.00 0.00 4.26
1771 3194 1.071019 GCGCGACGATTTCTCTGTCA 61.071 55.000 12.10 0.00 32.91 3.58
1772 3195 1.071019 TGCGCGACGATTTCTCTGTC 61.071 55.000 12.10 0.00 0.00 3.51
1866 3289 0.537143 TGGCACTTCTTTCCGCACAT 60.537 50.000 0.00 0.00 0.00 3.21
1911 3334 4.002906 ACTCAAGCAGGTTCGTGAAATA 57.997 40.909 0.00 0.00 0.00 1.40
1936 3359 2.282110 CCGTGGGGCATGTGAACA 60.282 61.111 0.00 0.00 0.00 3.18
1964 3387 3.207669 GCTGCATCCTCCTTGCCG 61.208 66.667 0.00 0.00 39.39 5.69
2141 3614 8.755018 CACTCTTCATTGTGTTTTAATTGAACC 58.245 33.333 0.00 0.00 0.00 3.62
2150 3623 7.231317 ACCATACATCACTCTTCATTGTGTTTT 59.769 33.333 0.00 0.00 35.82 2.43
2190 3663 6.587990 ACTTCAAAATCTGTCAGTCTGATACG 59.412 38.462 5.68 0.00 34.94 3.06
2201 3676 8.939929 TCTCATACATCAACTTCAAAATCTGTC 58.060 33.333 0.00 0.00 0.00 3.51
2202 3677 8.853077 TCTCATACATCAACTTCAAAATCTGT 57.147 30.769 0.00 0.00 0.00 3.41
2253 3732 8.173130 CGAAAGTGGTGGTTCTATGTATTTTAC 58.827 37.037 0.00 0.00 0.00 2.01
2260 3739 2.423577 GCGAAAGTGGTGGTTCTATGT 58.576 47.619 0.00 0.00 0.00 2.29
2288 3767 3.409026 AGTGATGGTTTTTCGAGAGCT 57.591 42.857 0.00 0.00 0.00 4.09
2312 3791 3.799420 GCGGTGCAAAATGTCAAGTTTTA 59.201 39.130 0.00 0.00 0.00 1.52
2324 3803 3.532896 TTTTTGGTGCGGTGCAAAA 57.467 42.105 0.00 0.00 41.47 2.44
2437 3916 0.892755 ACACGAGAGTTAATGGGCGA 59.107 50.000 0.00 0.00 46.40 5.54
2452 3931 2.452813 CCCAATCGCTTCGGACACG 61.453 63.158 0.00 0.00 42.74 4.49
2464 3943 2.514824 GTGAGAGCCGGCCCAATC 60.515 66.667 26.15 14.78 0.00 2.67
2476 3955 1.323271 GGTGAGCGATGGGAGTGAGA 61.323 60.000 0.00 0.00 0.00 3.27
2545 4024 3.474570 GGATCCGGAGCTGCCACT 61.475 66.667 20.86 0.00 35.94 4.00
2574 4053 1.227853 GGCCAGTTTGTCGACCACT 60.228 57.895 14.12 12.25 0.00 4.00
2575 4054 2.258726 GGGCCAGTTTGTCGACCAC 61.259 63.158 14.12 9.97 0.00 4.16
2576 4055 2.112297 GGGCCAGTTTGTCGACCA 59.888 61.111 14.12 0.00 0.00 4.02
2577 4056 2.671963 GGGGCCAGTTTGTCGACC 60.672 66.667 14.12 0.00 0.00 4.79
2578 4057 1.303317 ATGGGGCCAGTTTGTCGAC 60.303 57.895 9.11 9.11 0.00 4.20
2596 4075 1.081892 GAAGAAGCAGCTTCGCATCA 58.918 50.000 26.14 0.00 44.34 3.07
2603 4082 3.072184 TGAGGAGAAAGAAGAAGCAGCTT 59.928 43.478 7.60 7.60 0.00 3.74
2607 4086 3.008813 AGCATGAGGAGAAAGAAGAAGCA 59.991 43.478 0.00 0.00 0.00 3.91
2617 4096 1.817357 CACAAGCAGCATGAGGAGAA 58.183 50.000 4.23 0.00 39.69 2.87
2618 4097 0.675837 GCACAAGCAGCATGAGGAGA 60.676 55.000 4.23 0.00 39.69 3.71
2619 4098 1.801332 GCACAAGCAGCATGAGGAG 59.199 57.895 4.23 0.00 39.69 3.69
2650 4129 1.890489 AGCAGATGCAGCAACAAATGA 59.110 42.857 4.07 0.00 45.16 2.57
2651 4130 2.363788 AGCAGATGCAGCAACAAATG 57.636 45.000 4.07 0.00 45.16 2.32
2652 4131 2.561419 AGAAGCAGATGCAGCAACAAAT 59.439 40.909 4.07 0.00 45.16 2.32
2653 4132 1.958579 AGAAGCAGATGCAGCAACAAA 59.041 42.857 4.07 0.00 45.16 2.83
2654 4133 1.538512 GAGAAGCAGATGCAGCAACAA 59.461 47.619 4.07 0.00 45.16 2.83
2655 4134 1.162698 GAGAAGCAGATGCAGCAACA 58.837 50.000 4.07 0.00 45.16 3.33
2656 4135 0.450983 GGAGAAGCAGATGCAGCAAC 59.549 55.000 4.07 0.00 45.16 4.17
2657 4136 0.037160 TGGAGAAGCAGATGCAGCAA 59.963 50.000 4.07 0.00 45.16 3.91
2658 4137 0.255033 ATGGAGAAGCAGATGCAGCA 59.745 50.000 4.07 0.00 45.16 4.41
2659 4138 0.945813 GATGGAGAAGCAGATGCAGC 59.054 55.000 7.68 0.00 45.16 5.25
2660 4139 2.214347 CAGATGGAGAAGCAGATGCAG 58.786 52.381 7.68 0.00 45.16 4.41
2661 4140 1.134189 CCAGATGGAGAAGCAGATGCA 60.134 52.381 7.68 0.00 39.84 3.96
2671 4150 0.413434 TGAGACACCCCAGATGGAGA 59.587 55.000 0.00 0.00 37.39 3.71
2765 4244 4.028131 TGCTGCTTAAACTAGCCCTACTA 58.972 43.478 0.00 0.00 40.49 1.82
2766 4245 2.838202 TGCTGCTTAAACTAGCCCTACT 59.162 45.455 0.00 0.00 40.49 2.57
2767 4246 3.198872 CTGCTGCTTAAACTAGCCCTAC 58.801 50.000 0.00 0.00 40.49 3.18
2768 4247 2.420129 GCTGCTGCTTAAACTAGCCCTA 60.420 50.000 8.53 0.00 40.49 3.53
2769 4248 1.680249 GCTGCTGCTTAAACTAGCCCT 60.680 52.381 8.53 0.00 40.49 5.19
2770 4249 0.735471 GCTGCTGCTTAAACTAGCCC 59.265 55.000 8.53 0.00 40.49 5.19
2771 4250 0.375106 CGCTGCTGCTTAAACTAGCC 59.625 55.000 14.03 0.00 40.49 3.93
2772 4251 0.247854 GCGCTGCTGCTTAAACTAGC 60.248 55.000 14.03 3.20 41.59 3.42
2773 4252 1.363744 AGCGCTGCTGCTTAAACTAG 58.636 50.000 10.39 0.00 44.46 2.57
2774 4253 2.268298 GTAGCGCTGCTGCTTAAACTA 58.732 47.619 22.90 4.87 44.46 2.24
2775 4254 1.079503 GTAGCGCTGCTGCTTAAACT 58.920 50.000 22.90 5.75 44.46 2.66
2776 4255 3.587838 GTAGCGCTGCTGCTTAAAC 57.412 52.632 22.90 2.18 44.46 2.01
2795 4274 1.134367 CAGCGCTACTGGTACTTAGCA 59.866 52.381 10.99 0.00 43.19 3.49
2796 4275 1.841450 CAGCGCTACTGGTACTTAGC 58.159 55.000 10.99 10.08 43.19 3.09
2805 4284 2.309528 TGTTATTCCCAGCGCTACTG 57.690 50.000 10.99 0.78 46.77 2.74
2806 4285 2.906354 CTTGTTATTCCCAGCGCTACT 58.094 47.619 10.99 0.00 0.00 2.57
2807 4286 1.330829 GCTTGTTATTCCCAGCGCTAC 59.669 52.381 10.99 2.83 0.00 3.58
2808 4287 1.663695 GCTTGTTATTCCCAGCGCTA 58.336 50.000 10.99 0.00 0.00 4.26
2809 4288 1.369091 CGCTTGTTATTCCCAGCGCT 61.369 55.000 2.64 2.64 38.87 5.92
2810 4289 1.062525 CGCTTGTTATTCCCAGCGC 59.937 57.895 0.00 0.00 38.87 5.92
2811 4290 1.062525 GCGCTTGTTATTCCCAGCG 59.937 57.895 0.00 8.01 46.69 5.18
2812 4291 1.330829 GTAGCGCTTGTTATTCCCAGC 59.669 52.381 18.68 0.00 0.00 4.85
2813 4292 2.609459 CAGTAGCGCTTGTTATTCCCAG 59.391 50.000 18.68 0.00 0.00 4.45
2814 4293 2.627945 CAGTAGCGCTTGTTATTCCCA 58.372 47.619 18.68 0.00 0.00 4.37
2815 4294 1.330829 GCAGTAGCGCTTGTTATTCCC 59.669 52.381 18.68 0.00 0.00 3.97
2816 4295 2.739293 GCAGTAGCGCTTGTTATTCC 57.261 50.000 18.68 0.00 0.00 3.01
2823 4302 7.143571 TGCTAAATTGTAGCAGTAGCGCTTG 62.144 44.000 18.68 10.60 44.65 4.01
2824 4303 5.156001 TGCTAAATTGTAGCAGTAGCGCTT 61.156 41.667 18.68 0.00 44.65 4.68
2825 4304 3.678806 TGCTAAATTGTAGCAGTAGCGCT 60.679 43.478 17.26 17.26 44.65 5.92
2826 4305 2.607635 TGCTAAATTGTAGCAGTAGCGC 59.392 45.455 4.35 0.00 44.65 5.92
2833 4312 1.398041 CAGCGCTGCTAAATTGTAGCA 59.602 47.619 26.68 8.27 47.00 3.49
2834 4313 1.268234 CCAGCGCTGCTAAATTGTAGC 60.268 52.381 31.96 0.00 41.24 3.58
2835 4314 2.009774 ACCAGCGCTGCTAAATTGTAG 58.990 47.619 31.96 15.94 36.40 2.74
2836 4315 2.107950 ACCAGCGCTGCTAAATTGTA 57.892 45.000 31.96 0.00 36.40 2.41
2837 4316 1.247567 AACCAGCGCTGCTAAATTGT 58.752 45.000 31.96 18.85 36.40 2.71
2838 4317 2.223340 CCTAACCAGCGCTGCTAAATTG 60.223 50.000 31.96 18.16 36.40 2.32
2839 4318 2.017049 CCTAACCAGCGCTGCTAAATT 58.983 47.619 31.96 19.96 36.40 1.82
2840 4319 1.668419 CCTAACCAGCGCTGCTAAAT 58.332 50.000 31.96 16.37 36.40 1.40
2841 4320 0.392461 CCCTAACCAGCGCTGCTAAA 60.392 55.000 31.96 14.92 36.40 1.85
2842 4321 1.220749 CCCTAACCAGCGCTGCTAA 59.779 57.895 31.96 16.71 36.40 3.09
2843 4322 1.987855 ACCCTAACCAGCGCTGCTA 60.988 57.895 31.96 21.91 36.40 3.49
2844 4323 3.322466 ACCCTAACCAGCGCTGCT 61.322 61.111 31.96 21.97 40.77 4.24
2845 4324 3.127533 CACCCTAACCAGCGCTGC 61.128 66.667 31.96 0.00 0.00 5.25
2846 4325 2.436646 CCACCCTAACCAGCGCTG 60.437 66.667 30.52 30.52 0.00 5.18
2847 4326 2.606519 TCCACCCTAACCAGCGCT 60.607 61.111 2.64 2.64 0.00 5.92
2848 4327 2.436115 GTCCACCCTAACCAGCGC 60.436 66.667 0.00 0.00 0.00 5.92
2849 4328 2.125673 CGTCCACCCTAACCAGCG 60.126 66.667 0.00 0.00 0.00 5.18
2850 4329 2.267961 CCGTCCACCCTAACCAGC 59.732 66.667 0.00 0.00 0.00 4.85
2851 4330 2.267961 GCCGTCCACCCTAACCAG 59.732 66.667 0.00 0.00 0.00 4.00
2852 4331 3.697747 CGCCGTCCACCCTAACCA 61.698 66.667 0.00 0.00 0.00 3.67
2854 4333 2.713967 TAGCGCCGTCCACCCTAAC 61.714 63.158 2.29 0.00 0.00 2.34
2855 4334 2.362760 TAGCGCCGTCCACCCTAA 60.363 61.111 2.29 0.00 0.00 2.69
2856 4335 3.142838 GTAGCGCCGTCCACCCTA 61.143 66.667 2.29 0.00 0.00 3.53
2858 4337 4.814294 CAGTAGCGCCGTCCACCC 62.814 72.222 2.29 0.00 0.00 4.61
2859 4338 2.216750 TAACAGTAGCGCCGTCCACC 62.217 60.000 2.29 0.00 0.00 4.61
2860 4339 0.801067 CTAACAGTAGCGCCGTCCAC 60.801 60.000 2.29 0.00 0.00 4.02
2861 4340 0.961857 TCTAACAGTAGCGCCGTCCA 60.962 55.000 2.29 0.00 0.00 4.02
2862 4341 0.384669 ATCTAACAGTAGCGCCGTCC 59.615 55.000 2.29 0.00 0.00 4.79
2863 4342 1.202268 ACATCTAACAGTAGCGCCGTC 60.202 52.381 2.29 0.00 0.00 4.79
2864 4343 0.815734 ACATCTAACAGTAGCGCCGT 59.184 50.000 2.29 0.00 0.00 5.68
2865 4344 1.200483 CACATCTAACAGTAGCGCCG 58.800 55.000 2.29 0.00 0.00 6.46
2866 4345 0.931005 GCACATCTAACAGTAGCGCC 59.069 55.000 2.29 0.00 0.00 6.53
2867 4346 0.931005 GGCACATCTAACAGTAGCGC 59.069 55.000 0.00 0.00 0.00 5.92
2868 4347 1.927174 GTGGCACATCTAACAGTAGCG 59.073 52.381 13.86 0.00 44.52 4.26
2869 4348 2.673368 GTGTGGCACATCTAACAGTAGC 59.327 50.000 24.95 1.92 44.52 3.58
2870 4349 3.262420 GGTGTGGCACATCTAACAGTAG 58.738 50.000 24.95 0.00 44.52 2.57
2871 4350 2.635427 TGGTGTGGCACATCTAACAGTA 59.365 45.455 29.32 6.59 44.52 2.74
2872 4351 1.419762 TGGTGTGGCACATCTAACAGT 59.580 47.619 29.32 0.00 44.52 3.55
2873 4352 1.806542 GTGGTGTGGCACATCTAACAG 59.193 52.381 29.32 0.00 44.52 3.16
2874 4353 1.419762 AGTGGTGTGGCACATCTAACA 59.580 47.619 29.32 17.36 44.52 2.41
2875 4354 2.076863 GAGTGGTGTGGCACATCTAAC 58.923 52.381 29.32 20.50 44.52 2.34
2876 4355 1.337728 CGAGTGGTGTGGCACATCTAA 60.338 52.381 29.32 9.63 44.52 2.10
2877 4356 0.246360 CGAGTGGTGTGGCACATCTA 59.754 55.000 29.32 15.61 44.52 1.98
2878 4357 1.004560 CGAGTGGTGTGGCACATCT 60.005 57.895 29.32 22.96 44.52 2.90
2879 4358 2.034879 CCGAGTGGTGTGGCACATC 61.035 63.158 24.95 24.33 44.52 3.06
2880 4359 2.032528 CCGAGTGGTGTGGCACAT 59.967 61.111 24.95 7.49 44.52 3.21
2885 4364 4.704833 CCTGGCCGAGTGGTGTGG 62.705 72.222 0.00 0.00 37.67 4.17
2886 4365 3.883744 GACCTGGCCGAGTGGTGTG 62.884 68.421 13.15 0.00 37.67 3.82
2887 4366 3.626924 GACCTGGCCGAGTGGTGT 61.627 66.667 13.15 0.00 37.67 4.16
2888 4367 3.177194 TTGACCTGGCCGAGTGGTG 62.177 63.158 13.15 0.00 37.67 4.17
2889 4368 2.847234 TTGACCTGGCCGAGTGGT 60.847 61.111 8.92 8.92 37.67 4.16
2890 4369 2.046892 CTTGACCTGGCCGAGTGG 60.047 66.667 1.54 2.29 38.77 4.00
2891 4370 2.046892 CCTTGACCTGGCCGAGTG 60.047 66.667 1.54 0.00 0.00 3.51
2892 4371 3.322466 CCCTTGACCTGGCCGAGT 61.322 66.667 0.00 0.00 0.00 4.18
2893 4372 1.048724 TATCCCTTGACCTGGCCGAG 61.049 60.000 0.00 0.00 0.00 4.63
2894 4373 1.002403 TATCCCTTGACCTGGCCGA 59.998 57.895 0.00 0.00 0.00 5.54
2895 4374 1.146263 GTATCCCTTGACCTGGCCG 59.854 63.158 0.00 0.00 0.00 6.13
2896 4375 1.694696 CTAGTATCCCTTGACCTGGCC 59.305 57.143 0.00 0.00 0.00 5.36
2897 4376 1.070914 GCTAGTATCCCTTGACCTGGC 59.929 57.143 0.00 0.00 0.00 4.85
2898 4377 2.366916 CTGCTAGTATCCCTTGACCTGG 59.633 54.545 0.00 0.00 0.00 4.45
2899 4378 2.224161 GCTGCTAGTATCCCTTGACCTG 60.224 54.545 0.00 0.00 0.00 4.00
2900 4379 2.043227 GCTGCTAGTATCCCTTGACCT 58.957 52.381 0.00 0.00 0.00 3.85
2901 4380 1.269831 CGCTGCTAGTATCCCTTGACC 60.270 57.143 0.00 0.00 0.00 4.02
2902 4381 1.870167 GCGCTGCTAGTATCCCTTGAC 60.870 57.143 0.00 0.00 0.00 3.18
2903 4382 0.389391 GCGCTGCTAGTATCCCTTGA 59.611 55.000 0.00 0.00 0.00 3.02
2904 4383 0.390860 AGCGCTGCTAGTATCCCTTG 59.609 55.000 10.39 0.00 36.99 3.61
2905 4384 1.123928 AAGCGCTGCTAGTATCCCTT 58.876 50.000 12.58 0.00 38.25 3.95
2906 4385 0.390860 CAAGCGCTGCTAGTATCCCT 59.609 55.000 12.58 0.00 38.25 4.20
2907 4386 0.601311 CCAAGCGCTGCTAGTATCCC 60.601 60.000 12.58 0.00 38.25 3.85
2908 4387 0.389391 TCCAAGCGCTGCTAGTATCC 59.611 55.000 12.58 0.00 38.25 2.59
2909 4388 1.861575 GTTCCAAGCGCTGCTAGTATC 59.138 52.381 12.58 0.00 38.25 2.24
2910 4389 1.473434 GGTTCCAAGCGCTGCTAGTAT 60.473 52.381 12.58 0.00 38.25 2.12
2911 4390 0.108329 GGTTCCAAGCGCTGCTAGTA 60.108 55.000 12.58 0.00 38.25 1.82
2912 4391 1.376037 GGTTCCAAGCGCTGCTAGT 60.376 57.895 12.58 0.00 38.25 2.57
2913 4392 0.175760 TAGGTTCCAAGCGCTGCTAG 59.824 55.000 12.58 0.87 38.25 3.42
2914 4393 0.108329 GTAGGTTCCAAGCGCTGCTA 60.108 55.000 12.58 0.00 38.25 3.49
2915 4394 1.376037 GTAGGTTCCAAGCGCTGCT 60.376 57.895 12.58 0.00 42.56 4.24
2916 4395 2.740714 CGTAGGTTCCAAGCGCTGC 61.741 63.158 12.58 0.00 0.00 5.25
2917 4396 2.740714 GCGTAGGTTCCAAGCGCTG 61.741 63.158 12.58 5.12 44.00 5.18
2918 4397 2.434359 GCGTAGGTTCCAAGCGCT 60.434 61.111 2.64 2.64 44.00 5.92
2919 4398 2.740714 CTGCGTAGGTTCCAAGCGC 61.741 63.158 0.00 0.00 47.00 5.92
2920 4399 2.740714 GCTGCGTAGGTTCCAAGCG 61.741 63.158 1.76 0.00 0.00 4.68
2921 4400 2.740714 CGCTGCGTAGGTTCCAAGC 61.741 63.158 14.93 0.00 0.00 4.01
2922 4401 2.740714 GCGCTGCGTAGGTTCCAAG 61.741 63.158 24.04 0.00 0.00 3.61
2923 4402 1.879737 TAGCGCTGCGTAGGTTCCAA 61.880 55.000 22.90 0.00 0.00 3.53
2924 4403 2.344981 TAGCGCTGCGTAGGTTCCA 61.345 57.895 22.90 0.00 0.00 3.53
2925 4404 1.877165 GTAGCGCTGCGTAGGTTCC 60.877 63.158 22.90 4.63 0.00 3.62
2926 4405 0.734942 TTGTAGCGCTGCGTAGGTTC 60.735 55.000 22.90 5.41 0.00 3.62
2927 4406 1.012486 GTTGTAGCGCTGCGTAGGTT 61.012 55.000 22.90 7.09 0.00 3.50
2928 4407 1.445582 GTTGTAGCGCTGCGTAGGT 60.446 57.895 22.90 8.59 0.00 3.08
2929 4408 0.099968 TAGTTGTAGCGCTGCGTAGG 59.900 55.000 22.90 0.00 0.00 3.18
2930 4409 1.904144 TTAGTTGTAGCGCTGCGTAG 58.096 50.000 22.90 0.00 0.00 3.51
2931 4410 2.256174 CTTTAGTTGTAGCGCTGCGTA 58.744 47.619 22.90 8.23 0.00 4.42
2932 4411 1.068474 CTTTAGTTGTAGCGCTGCGT 58.932 50.000 22.90 10.16 0.00 5.24
2933 4412 0.247301 GCTTTAGTTGTAGCGCTGCG 60.247 55.000 22.90 19.17 0.00 5.18
2934 4413 0.796312 TGCTTTAGTTGTAGCGCTGC 59.204 50.000 22.90 21.06 40.26 5.25
2935 4414 3.747099 ATTGCTTTAGTTGTAGCGCTG 57.253 42.857 22.90 0.00 40.26 5.18
2936 4415 3.309954 GCTATTGCTTTAGTTGTAGCGCT 59.690 43.478 17.26 17.26 40.26 5.92
2937 4416 3.063452 TGCTATTGCTTTAGTTGTAGCGC 59.937 43.478 0.00 0.00 40.26 5.92
2938 4417 4.330074 AGTGCTATTGCTTTAGTTGTAGCG 59.670 41.667 0.00 0.00 40.26 4.26
2939 4418 5.803020 AGTGCTATTGCTTTAGTTGTAGC 57.197 39.130 0.00 0.00 40.48 3.58
2940 4419 7.391786 CGTTAGTGCTATTGCTTTAGTTGTAG 58.608 38.462 0.00 0.00 40.48 2.74
2941 4420 6.183360 GCGTTAGTGCTATTGCTTTAGTTGTA 60.183 38.462 0.00 0.00 40.48 2.41
2942 4421 5.390567 GCGTTAGTGCTATTGCTTTAGTTGT 60.391 40.000 0.00 0.00 40.48 3.32
2943 4422 5.022021 GCGTTAGTGCTATTGCTTTAGTTG 58.978 41.667 0.00 0.00 40.48 3.16
2944 4423 4.935808 AGCGTTAGTGCTATTGCTTTAGTT 59.064 37.500 0.00 0.00 45.14 2.24
2945 4424 4.330074 CAGCGTTAGTGCTATTGCTTTAGT 59.670 41.667 0.00 0.00 45.23 2.24
2946 4425 4.330074 ACAGCGTTAGTGCTATTGCTTTAG 59.670 41.667 0.00 0.00 45.23 1.85
2947 4426 4.250464 ACAGCGTTAGTGCTATTGCTTTA 58.750 39.130 0.00 0.00 45.23 1.85
2948 4427 3.074412 ACAGCGTTAGTGCTATTGCTTT 58.926 40.909 0.00 0.00 45.23 3.51
2949 4428 2.699954 ACAGCGTTAGTGCTATTGCTT 58.300 42.857 0.00 0.00 45.23 3.91
2950 4429 2.386661 ACAGCGTTAGTGCTATTGCT 57.613 45.000 0.00 1.48 45.23 3.91
2951 4430 3.163594 CAAACAGCGTTAGTGCTATTGC 58.836 45.455 0.00 0.00 45.23 3.56
2952 4431 4.394795 GACAAACAGCGTTAGTGCTATTG 58.605 43.478 10.19 10.19 45.23 1.90
2953 4432 3.122948 CGACAAACAGCGTTAGTGCTATT 59.877 43.478 0.00 0.00 45.23 1.73
2954 4433 2.666508 CGACAAACAGCGTTAGTGCTAT 59.333 45.455 0.00 0.00 45.23 2.97
2955 4434 2.055838 CGACAAACAGCGTTAGTGCTA 58.944 47.619 0.00 0.00 45.23 3.49
2957 4436 0.721483 GCGACAAACAGCGTTAGTGC 60.721 55.000 0.00 0.00 0.00 4.40
2958 4437 0.110823 GGCGACAAACAGCGTTAGTG 60.111 55.000 0.00 0.00 0.00 2.74
2959 4438 1.226030 GGGCGACAAACAGCGTTAGT 61.226 55.000 0.00 0.00 0.00 2.24
2960 4439 1.495951 GGGCGACAAACAGCGTTAG 59.504 57.895 0.00 0.00 0.00 2.34
2961 4440 1.962306 GGGGCGACAAACAGCGTTA 60.962 57.895 0.00 0.00 0.00 3.18
2962 4441 3.284449 GGGGCGACAAACAGCGTT 61.284 61.111 0.00 0.00 0.00 4.84
2982 4461 3.648009 GATGTCTATCCACAGCTGTAGC 58.352 50.000 21.20 9.93 42.49 3.58
2994 4473 0.034059 CGGGCCAGTGGATGTCTATC 59.966 60.000 15.20 0.00 0.00 2.08
2995 4474 0.398522 TCGGGCCAGTGGATGTCTAT 60.399 55.000 15.20 0.00 0.00 1.98
2996 4475 1.001120 TCGGGCCAGTGGATGTCTA 59.999 57.895 15.20 0.00 0.00 2.59
2997 4476 2.284625 TCGGGCCAGTGGATGTCT 60.285 61.111 15.20 0.00 0.00 3.41
2998 4477 2.125106 GTCGGGCCAGTGGATGTC 60.125 66.667 15.20 0.00 0.00 3.06
2999 4478 2.607750 AGTCGGGCCAGTGGATGT 60.608 61.111 15.20 0.00 0.00 3.06
3000 4479 2.124983 CAGTCGGGCCAGTGGATG 60.125 66.667 15.20 0.80 0.00 3.51
3001 4480 3.402681 CCAGTCGGGCCAGTGGAT 61.403 66.667 15.20 0.00 39.02 3.41
3010 4489 3.775654 GTGAGGAGGCCAGTCGGG 61.776 72.222 5.01 0.00 40.85 5.14
3011 4490 3.775654 GGTGAGGAGGCCAGTCGG 61.776 72.222 5.01 0.00 0.00 4.79
3012 4491 2.681778 AGGTGAGGAGGCCAGTCG 60.682 66.667 5.01 0.00 0.00 4.18
3013 4492 1.305718 AGAGGTGAGGAGGCCAGTC 60.306 63.158 5.01 0.00 0.00 3.51
3014 4493 1.305718 GAGAGGTGAGGAGGCCAGT 60.306 63.158 5.01 0.00 0.00 4.00
3015 4494 1.001503 AGAGAGGTGAGGAGGCCAG 59.998 63.158 5.01 0.00 0.00 4.85
3016 4495 1.000993 GAGAGAGGTGAGGAGGCCA 59.999 63.158 5.01 0.00 0.00 5.36
3017 4496 0.755327 GAGAGAGAGGTGAGGAGGCC 60.755 65.000 0.00 0.00 0.00 5.19
3018 4497 0.258774 AGAGAGAGAGGTGAGGAGGC 59.741 60.000 0.00 0.00 0.00 4.70
3019 4498 1.563879 TGAGAGAGAGAGGTGAGGAGG 59.436 57.143 0.00 0.00 0.00 4.30
3020 4499 3.582998 ATGAGAGAGAGAGGTGAGGAG 57.417 52.381 0.00 0.00 0.00 3.69
3021 4500 4.017591 AGAAATGAGAGAGAGAGGTGAGGA 60.018 45.833 0.00 0.00 0.00 3.71
3022 4501 4.280819 AGAAATGAGAGAGAGAGGTGAGG 58.719 47.826 0.00 0.00 0.00 3.86
3023 4502 5.195940 AGAGAAATGAGAGAGAGAGGTGAG 58.804 45.833 0.00 0.00 0.00 3.51
3024 4503 5.044919 AGAGAGAAATGAGAGAGAGAGGTGA 60.045 44.000 0.00 0.00 0.00 4.02
3025 4504 5.195940 AGAGAGAAATGAGAGAGAGAGGTG 58.804 45.833 0.00 0.00 0.00 4.00
3026 4505 5.192522 AGAGAGAGAAATGAGAGAGAGAGGT 59.807 44.000 0.00 0.00 0.00 3.85
3027 4506 5.688807 AGAGAGAGAAATGAGAGAGAGAGG 58.311 45.833 0.00 0.00 0.00 3.69
3028 4507 5.762218 GGAGAGAGAGAAATGAGAGAGAGAG 59.238 48.000 0.00 0.00 0.00 3.20
3029 4508 5.397899 GGGAGAGAGAGAAATGAGAGAGAGA 60.398 48.000 0.00 0.00 0.00 3.10
3030 4509 4.823989 GGGAGAGAGAGAAATGAGAGAGAG 59.176 50.000 0.00 0.00 0.00 3.20
3031 4510 4.229353 TGGGAGAGAGAGAAATGAGAGAGA 59.771 45.833 0.00 0.00 0.00 3.10
3032 4511 4.339247 GTGGGAGAGAGAGAAATGAGAGAG 59.661 50.000 0.00 0.00 0.00 3.20
3033 4512 4.277476 GTGGGAGAGAGAGAAATGAGAGA 58.723 47.826 0.00 0.00 0.00 3.10
3034 4513 3.066621 CGTGGGAGAGAGAGAAATGAGAG 59.933 52.174 0.00 0.00 0.00 3.20
3035 4514 3.020274 CGTGGGAGAGAGAGAAATGAGA 58.980 50.000 0.00 0.00 0.00 3.27
3036 4515 2.481104 GCGTGGGAGAGAGAGAAATGAG 60.481 54.545 0.00 0.00 0.00 2.90
3037 4516 1.478510 GCGTGGGAGAGAGAGAAATGA 59.521 52.381 0.00 0.00 0.00 2.57
3038 4517 1.800655 CGCGTGGGAGAGAGAGAAATG 60.801 57.143 0.00 0.00 0.00 2.32
3039 4518 0.457851 CGCGTGGGAGAGAGAGAAAT 59.542 55.000 0.00 0.00 0.00 2.17
3040 4519 0.608308 TCGCGTGGGAGAGAGAGAAA 60.608 55.000 5.77 0.00 0.00 2.52
3041 4520 0.394488 ATCGCGTGGGAGAGAGAGAA 60.394 55.000 5.77 0.00 0.00 2.87
3042 4521 0.816018 GATCGCGTGGGAGAGAGAGA 60.816 60.000 5.77 0.00 0.00 3.10
3043 4522 1.652012 GATCGCGTGGGAGAGAGAG 59.348 63.158 5.77 0.00 0.00 3.20
3044 4523 1.824329 GGATCGCGTGGGAGAGAGA 60.824 63.158 5.77 0.00 0.00 3.10
3045 4524 2.725008 GGATCGCGTGGGAGAGAG 59.275 66.667 5.77 0.00 0.00 3.20
3046 4525 2.833582 GGGATCGCGTGGGAGAGA 60.834 66.667 5.77 0.00 0.00 3.10
3047 4526 3.917760 GGGGATCGCGTGGGAGAG 61.918 72.222 5.77 0.00 0.00 3.20
3048 4527 4.770362 TGGGGATCGCGTGGGAGA 62.770 66.667 5.77 0.00 0.00 3.71
3049 4528 2.608970 ATTTGGGGATCGCGTGGGAG 62.609 60.000 5.77 0.00 0.00 4.30
3050 4529 2.602746 GATTTGGGGATCGCGTGGGA 62.603 60.000 5.77 0.00 0.00 4.37
3051 4530 2.124320 ATTTGGGGATCGCGTGGG 60.124 61.111 5.77 0.00 0.00 4.61
3052 4531 2.534019 CGATTTGGGGATCGCGTGG 61.534 63.158 5.77 0.00 41.90 4.94
3053 4532 3.014036 CGATTTGGGGATCGCGTG 58.986 61.111 5.77 0.00 41.90 5.34
3058 4537 3.287520 GGCGGCGATTTGGGGATC 61.288 66.667 12.98 0.00 0.00 3.36
3059 4538 4.894896 GGGCGGCGATTTGGGGAT 62.895 66.667 12.98 0.00 0.00 3.85
3086 4565 4.432741 GGAGTTGGCAGGGGAGGC 62.433 72.222 0.00 0.00 0.00 4.70
3087 4566 4.101448 CGGAGTTGGCAGGGGAGG 62.101 72.222 0.00 0.00 0.00 4.30
3088 4567 4.101448 CCGGAGTTGGCAGGGGAG 62.101 72.222 0.00 0.00 0.00 4.30
3096 4575 3.764466 AGAGCTCGCCGGAGTTGG 61.764 66.667 5.05 0.00 42.53 3.77
3097 4576 2.507992 CAGAGCTCGCCGGAGTTG 60.508 66.667 5.05 0.36 42.53 3.16
3098 4577 3.764466 CCAGAGCTCGCCGGAGTT 61.764 66.667 5.05 0.00 42.53 3.01
3113 4592 4.830765 GTATGCTGGACGGCGCCA 62.831 66.667 28.98 19.17 36.30 5.69
3116 4595 4.155733 TGGGTATGCTGGACGGCG 62.156 66.667 4.80 4.80 34.52 6.46
3117 4596 2.513897 GTGGGTATGCTGGACGGC 60.514 66.667 0.00 0.00 0.00 5.68
3118 4597 2.202878 CGTGGGTATGCTGGACGG 60.203 66.667 0.00 0.00 0.00 4.79
3119 4598 2.202878 CCGTGGGTATGCTGGACG 60.203 66.667 0.00 0.00 0.00 4.79
3120 4599 2.513897 GCCGTGGGTATGCTGGAC 60.514 66.667 0.00 0.00 0.00 4.02
3121 4600 2.687200 AGCCGTGGGTATGCTGGA 60.687 61.111 0.00 0.00 33.23 3.86
3122 4601 2.203070 GAGCCGTGGGTATGCTGG 60.203 66.667 0.00 0.00 34.99 4.85
3123 4602 2.203070 GGAGCCGTGGGTATGCTG 60.203 66.667 0.00 0.00 34.99 4.41
3124 4603 3.480133 GGGAGCCGTGGGTATGCT 61.480 66.667 0.00 0.00 38.24 3.79
3125 4604 4.564110 GGGGAGCCGTGGGTATGC 62.564 72.222 0.00 0.00 0.00 3.14
3126 4605 3.873812 GGGGGAGCCGTGGGTATG 61.874 72.222 0.00 0.00 0.00 2.39
3127 4606 4.103928 AGGGGGAGCCGTGGGTAT 62.104 66.667 0.00 0.00 0.00 2.73
3128 4607 4.791069 GAGGGGGAGCCGTGGGTA 62.791 72.222 0.00 0.00 0.00 3.69
3137 4616 2.285889 TAGAGCTCGGTGAGGGGGAG 62.286 65.000 8.37 0.00 0.00 4.30
3138 4617 2.314215 TAGAGCTCGGTGAGGGGGA 61.314 63.158 8.37 0.00 0.00 4.81
3139 4618 2.128507 GTAGAGCTCGGTGAGGGGG 61.129 68.421 8.37 0.00 0.00 5.40
3140 4619 2.128507 GGTAGAGCTCGGTGAGGGG 61.129 68.421 8.37 0.00 0.00 4.79
3141 4620 1.076632 AGGTAGAGCTCGGTGAGGG 60.077 63.158 8.37 0.00 0.00 4.30
3142 4621 2.010582 GCAGGTAGAGCTCGGTGAGG 62.011 65.000 8.37 0.00 0.00 3.86
3143 4622 1.034838 AGCAGGTAGAGCTCGGTGAG 61.035 60.000 8.37 1.04 38.01 3.51
3144 4623 1.000771 AGCAGGTAGAGCTCGGTGA 60.001 57.895 8.37 0.00 38.01 4.02
3145 4624 3.609703 AGCAGGTAGAGCTCGGTG 58.390 61.111 8.37 5.73 38.01 4.94
3150 4629 0.686112 GAGGTGGAGCAGGTAGAGCT 60.686 60.000 0.00 0.00 46.82 4.09
3151 4630 0.686112 AGAGGTGGAGCAGGTAGAGC 60.686 60.000 0.00 0.00 0.00 4.09
3152 4631 1.754226 GAAGAGGTGGAGCAGGTAGAG 59.246 57.143 0.00 0.00 0.00 2.43
3153 4632 1.853963 GAAGAGGTGGAGCAGGTAGA 58.146 55.000 0.00 0.00 0.00 2.59
3154 4633 0.457851 CGAAGAGGTGGAGCAGGTAG 59.542 60.000 0.00 0.00 0.00 3.18
3155 4634 0.039180 TCGAAGAGGTGGAGCAGGTA 59.961 55.000 0.00 0.00 0.00 3.08
3156 4635 0.616111 ATCGAAGAGGTGGAGCAGGT 60.616 55.000 0.00 0.00 43.63 4.00
3157 4636 0.103937 GATCGAAGAGGTGGAGCAGG 59.896 60.000 0.00 0.00 43.63 4.85
3158 4637 3.657956 GATCGAAGAGGTGGAGCAG 57.342 57.895 0.00 0.00 43.63 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.