Multiple sequence alignment - TraesCS5D01G295400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G295400 chr5D 100.000 3597 0 0 1 3597 393554056 393557652 0.000000e+00 6643.0
1 TraesCS5D01G295400 chr5D 91.569 1198 100 1 1419 2615 390707454 390708651 0.000000e+00 1652.0
2 TraesCS5D01G295400 chr5D 82.905 1866 280 27 1027 2872 393849294 393847448 0.000000e+00 1642.0
3 TraesCS5D01G295400 chr5D 91.414 1188 100 2 1419 2605 381564933 381566119 0.000000e+00 1628.0
4 TraesCS5D01G295400 chr5D 84.800 375 54 1 1024 1395 390707089 390707463 1.220000e-99 374.0
5 TraesCS5D01G295400 chr5A 93.895 1900 96 8 1024 2913 495327203 495329092 0.000000e+00 2848.0
6 TraesCS5D01G295400 chr5A 83.441 1866 276 23 1027 2872 495879802 495877950 0.000000e+00 1703.0
7 TraesCS5D01G295400 chr5A 89.784 1018 101 3 9 1025 506344124 506343109 0.000000e+00 1301.0
8 TraesCS5D01G295400 chr5B 95.762 1699 67 2 1024 2717 473193030 473194728 0.000000e+00 2734.0
9 TraesCS5D01G295400 chr5B 91.997 1187 95 0 1419 2605 457396485 457397671 0.000000e+00 1666.0
10 TraesCS5D01G295400 chr5B 82.783 1847 277 25 1024 2845 473665023 473663193 0.000000e+00 1611.0
11 TraesCS5D01G295400 chr5B 91.419 874 75 0 1419 2292 471135001 471135874 0.000000e+00 1199.0
12 TraesCS5D01G295400 chr5B 78.722 1612 294 35 1025 2601 473284908 473286505 0.000000e+00 1031.0
13 TraesCS5D01G295400 chr5B 92.145 331 26 0 2285 2615 471136608 471136938 5.440000e-128 468.0
14 TraesCS5D01G295400 chr5B 84.533 375 55 1 1024 1395 471134636 471135010 5.670000e-98 368.0
15 TraesCS5D01G295400 chr5B 85.879 347 46 1 1024 1367 457396120 457396466 2.040000e-97 366.0
16 TraesCS5D01G295400 chr5B 90.909 231 19 1 2826 3056 473195056 473195284 3.490000e-80 309.0
17 TraesCS5D01G295400 chr5B 79.618 157 26 5 2262 2415 450611760 450611607 1.370000e-19 108.0
18 TraesCS5D01G295400 chr5B 94.118 68 2 2 3053 3119 483969371 483969437 6.350000e-18 102.0
19 TraesCS5D01G295400 chr5B 89.552 67 4 3 3057 3120 2810050 2809984 8.280000e-12 82.4
20 TraesCS5D01G295400 chr3A 92.878 1025 71 1 1 1025 682576418 682575396 0.000000e+00 1487.0
21 TraesCS5D01G295400 chr3A 91.131 1026 89 2 1 1025 19773586 19772562 0.000000e+00 1389.0
22 TraesCS5D01G295400 chr3A 85.405 185 27 0 3385 3569 144327003 144326819 3.660000e-45 193.0
23 TraesCS5D01G295400 chr7B 92.827 948 67 1 78 1025 744014548 744015494 0.000000e+00 1373.0
24 TraesCS5D01G295400 chr7B 90.638 940 86 2 3 942 678292918 678293855 0.000000e+00 1247.0
25 TraesCS5D01G295400 chr7B 87.793 1024 123 2 3 1025 43250905 43251927 0.000000e+00 1197.0
26 TraesCS5D01G295400 chr7B 85.878 262 28 8 3103 3358 510763501 510763243 1.650000e-68 270.0
27 TraesCS5D01G295400 chr7B 87.500 64 7 1 3057 3119 622614054 622613991 4.980000e-09 73.1
28 TraesCS5D01G295400 chrUn 89.941 1024 101 2 3 1025 42168195 42169217 0.000000e+00 1319.0
29 TraesCS5D01G295400 chrUn 86.742 264 21 9 3103 3364 24941281 24941030 7.600000e-72 281.0
30 TraesCS5D01G295400 chr1B 89.345 1023 109 0 3 1025 41365071 41364049 0.000000e+00 1286.0
31 TraesCS5D01G295400 chr2B 88.184 1024 119 2 3 1025 9037001 9038023 0.000000e+00 1219.0
32 TraesCS5D01G295400 chr2B 85.938 192 22 4 3385 3574 165109940 165110128 2.190000e-47 200.0
33 TraesCS5D01G295400 chr2B 84.492 187 28 1 3385 3571 13061141 13061326 2.210000e-42 183.0
34 TraesCS5D01G295400 chr2B 84.409 186 29 0 3385 3570 49483889 49484074 2.210000e-42 183.0
35 TraesCS5D01G295400 chr2D 90.114 263 21 5 3103 3362 30359405 30359665 1.600000e-88 337.0
36 TraesCS5D01G295400 chr2D 88.235 187 21 1 3385 3571 114542447 114542632 4.670000e-54 222.0
37 TraesCS5D01G295400 chr2D 82.474 194 34 0 3385 3578 43977306 43977113 1.720000e-38 171.0
38 TraesCS5D01G295400 chr2D 85.075 67 8 2 3054 3118 423863985 423863919 2.320000e-07 67.6
39 TraesCS5D01G295400 chr7A 89.844 256 21 5 3103 3355 694919228 694919481 1.250000e-84 324.0
40 TraesCS5D01G295400 chr7A 89.057 265 24 5 3103 3364 694959397 694959659 1.250000e-84 324.0
41 TraesCS5D01G295400 chr7A 88.973 263 24 5 3103 3362 694781640 694781900 1.610000e-83 320.0
42 TraesCS5D01G295400 chr7A 89.855 69 5 2 3053 3119 275174684 275174752 1.780000e-13 87.9
43 TraesCS5D01G295400 chr6A 88.973 263 22 6 3103 3360 115336827 115337087 5.800000e-83 318.0
44 TraesCS5D01G295400 chr3B 86.719 256 20 9 3102 3355 684296032 684295789 4.580000e-69 272.0
45 TraesCS5D01G295400 chr3B 84.817 191 27 2 3385 3574 187884873 187884684 1.320000e-44 191.0
46 TraesCS5D01G295400 chr3B 87.500 64 6 2 3057 3119 655440632 655440570 4.980000e-09 73.1
47 TraesCS5D01G295400 chr3D 85.246 244 28 8 3103 3342 108838331 108838092 9.980000e-61 244.0
48 TraesCS5D01G295400 chr3D 87.500 64 7 1 3057 3119 603524011 603524074 4.980000e-09 73.1
49 TraesCS5D01G295400 chr7D 83.957 187 29 1 3385 3570 601689700 601689886 1.030000e-40 178.0
50 TraesCS5D01G295400 chr1D 82.632 190 33 0 3385 3574 362513341 362513530 6.180000e-38 169.0
51 TraesCS5D01G295400 chr2A 92.188 64 4 1 3057 3119 184536620 184536683 4.950000e-14 89.8
52 TraesCS5D01G295400 chr6B 86.667 75 5 5 3048 3119 686826629 686826701 1.070000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G295400 chr5D 393554056 393557652 3596 False 6643.000000 6643 100.000000 1 3597 1 chr5D.!!$F2 3596
1 TraesCS5D01G295400 chr5D 393847448 393849294 1846 True 1642.000000 1642 82.905000 1027 2872 1 chr5D.!!$R1 1845
2 TraesCS5D01G295400 chr5D 381564933 381566119 1186 False 1628.000000 1628 91.414000 1419 2605 1 chr5D.!!$F1 1186
3 TraesCS5D01G295400 chr5D 390707089 390708651 1562 False 1013.000000 1652 88.184500 1024 2615 2 chr5D.!!$F3 1591
4 TraesCS5D01G295400 chr5A 495327203 495329092 1889 False 2848.000000 2848 93.895000 1024 2913 1 chr5A.!!$F1 1889
5 TraesCS5D01G295400 chr5A 495877950 495879802 1852 True 1703.000000 1703 83.441000 1027 2872 1 chr5A.!!$R1 1845
6 TraesCS5D01G295400 chr5A 506343109 506344124 1015 True 1301.000000 1301 89.784000 9 1025 1 chr5A.!!$R2 1016
7 TraesCS5D01G295400 chr5B 473663193 473665023 1830 True 1611.000000 1611 82.783000 1024 2845 1 chr5B.!!$R3 1821
8 TraesCS5D01G295400 chr5B 473193030 473195284 2254 False 1521.500000 2734 93.335500 1024 3056 2 chr5B.!!$F5 2032
9 TraesCS5D01G295400 chr5B 473284908 473286505 1597 False 1031.000000 1031 78.722000 1025 2601 1 chr5B.!!$F1 1576
10 TraesCS5D01G295400 chr5B 457396120 457397671 1551 False 1016.000000 1666 88.938000 1024 2605 2 chr5B.!!$F3 1581
11 TraesCS5D01G295400 chr5B 471134636 471136938 2302 False 678.333333 1199 89.365667 1024 2615 3 chr5B.!!$F4 1591
12 TraesCS5D01G295400 chr3A 682575396 682576418 1022 True 1487.000000 1487 92.878000 1 1025 1 chr3A.!!$R3 1024
13 TraesCS5D01G295400 chr3A 19772562 19773586 1024 True 1389.000000 1389 91.131000 1 1025 1 chr3A.!!$R1 1024
14 TraesCS5D01G295400 chr7B 744014548 744015494 946 False 1373.000000 1373 92.827000 78 1025 1 chr7B.!!$F3 947
15 TraesCS5D01G295400 chr7B 678292918 678293855 937 False 1247.000000 1247 90.638000 3 942 1 chr7B.!!$F2 939
16 TraesCS5D01G295400 chr7B 43250905 43251927 1022 False 1197.000000 1197 87.793000 3 1025 1 chr7B.!!$F1 1022
17 TraesCS5D01G295400 chrUn 42168195 42169217 1022 False 1319.000000 1319 89.941000 3 1025 1 chrUn.!!$F1 1022
18 TraesCS5D01G295400 chr1B 41364049 41365071 1022 True 1286.000000 1286 89.345000 3 1025 1 chr1B.!!$R1 1022
19 TraesCS5D01G295400 chr2B 9037001 9038023 1022 False 1219.000000 1219 88.184000 3 1025 1 chr2B.!!$F1 1022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 782 0.107703 CAGACATGGCATACGTGGGT 60.108 55.0 0.00 0.0 40.51 4.51 F
1005 1010 1.806496 TCATCCTCGGGGACATGAAT 58.194 50.0 5.91 0.0 45.43 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2577 3369 0.973632 TCACAGAGCATAACACCGGT 59.026 50.0 0.00 0.00 0.00 5.28 R
2958 3973 0.833287 AACTGTAGATGGCCGCAGAT 59.167 50.0 14.87 3.89 33.57 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 159 2.362369 GGCACAGCCTAGGCAGAGA 61.362 63.158 34.70 0.00 46.69 3.10
322 324 0.539438 GCATGGTGGTGTGGGAGAAA 60.539 55.000 0.00 0.00 0.00 2.52
414 416 3.681835 ACCGACGGAGACACTGGC 61.682 66.667 23.38 0.00 0.00 4.85
778 782 0.107703 CAGACATGGCATACGTGGGT 60.108 55.000 0.00 0.00 40.51 4.51
844 849 4.687215 AGAAGCTGAGCGCGCCAA 62.687 61.111 30.33 15.93 45.59 4.52
945 950 2.483889 CGAGGTAGATTTGAGGGAAGCC 60.484 54.545 0.00 0.00 0.00 4.35
1005 1010 1.806496 TCATCCTCGGGGACATGAAT 58.194 50.000 5.91 0.00 45.43 2.57
1378 1386 2.238898 ACTCAACCTTGTAGTATGGCCC 59.761 50.000 0.00 0.00 0.00 5.80
1683 1691 4.457496 GCTGCAGCGGCTCAGGTA 62.457 66.667 25.23 4.54 41.91 3.08
1741 1752 5.074102 AGAGATCAATGCCCCAAATATCTCA 59.926 40.000 10.93 0.00 40.06 3.27
1818 1829 6.169094 AGATGAAGTACCTGATGTTGAACAG 58.831 40.000 3.74 0.00 0.00 3.16
1882 1893 3.002759 GTGTGCCAAAAGTTGAGACTCTC 59.997 47.826 3.68 0.00 34.21 3.20
1958 1973 6.767524 ATAAGAGTAGCCATATCTCGGAAG 57.232 41.667 0.00 0.00 33.96 3.46
2123 2138 2.218603 GACGCTTCTCCTTTGTTGGAA 58.781 47.619 0.00 0.00 35.43 3.53
2137 2152 6.090763 CCTTTGTTGGAAAAGTTTGTCTTGTC 59.909 38.462 0.00 0.00 39.12 3.18
2195 2242 9.752961 CTAATTGCCATGTTTGAATCATGAATA 57.247 29.630 15.74 3.26 43.47 1.75
2392 3184 2.674852 TCTTGAGAATGCAACATCGCTC 59.325 45.455 0.00 0.00 0.00 5.03
2399 3191 2.097038 GCAACATCGCTCGAGTGCT 61.097 57.895 21.17 9.01 31.71 4.40
2519 3311 3.331478 AATCACTCTTGGCTGTGAGAG 57.669 47.619 8.46 7.35 44.85 3.20
2559 3351 6.099159 AGTTCCCTCTACAGTCAAGTTAAC 57.901 41.667 0.00 0.00 0.00 2.01
2577 3369 2.763215 CCTACCAGGGCCTTGCAA 59.237 61.111 9.90 0.00 0.00 4.08
2666 3459 0.307453 TAGCTGTGTTGTGCTTTGCG 59.693 50.000 0.00 0.00 40.35 4.85
2703 3496 7.857404 ATATATAGCTGTCTAGTGTTTGGGT 57.143 36.000 0.00 0.00 0.00 4.51
2704 3497 2.841442 AGCTGTCTAGTGTTTGGGTC 57.159 50.000 0.00 0.00 0.00 4.46
2705 3498 1.348036 AGCTGTCTAGTGTTTGGGTCC 59.652 52.381 0.00 0.00 0.00 4.46
2706 3499 1.939838 GCTGTCTAGTGTTTGGGTCCG 60.940 57.143 0.00 0.00 0.00 4.79
2709 3502 1.342174 GTCTAGTGTTTGGGTCCGTGA 59.658 52.381 0.00 0.00 0.00 4.35
2710 3503 2.028385 GTCTAGTGTTTGGGTCCGTGAT 60.028 50.000 0.00 0.00 0.00 3.06
2715 3615 3.056322 AGTGTTTGGGTCCGTGATAGTAC 60.056 47.826 0.00 0.00 0.00 2.73
2723 3623 5.716228 TGGGTCCGTGATAGTACTTTCTTTA 59.284 40.000 13.52 0.00 0.00 1.85
2724 3624 6.211184 TGGGTCCGTGATAGTACTTTCTTTAA 59.789 38.462 13.52 0.00 0.00 1.52
2778 3685 1.251251 ACTGAATTCACAGCCCTTGC 58.749 50.000 3.38 0.00 41.06 4.01
2793 3700 2.629617 CCCTTGCTGTGGATTGAGTTTT 59.370 45.455 0.00 0.00 0.00 2.43
2820 3730 1.603456 TGCTTGAAGTCATGCCGAAA 58.397 45.000 14.50 0.00 43.75 3.46
2830 3845 3.119849 AGTCATGCCGAAAAGTTGTATGC 60.120 43.478 0.00 0.00 0.00 3.14
2846 3861 8.589335 AGTTGTATGCGATAATGTAAACTAGG 57.411 34.615 0.00 0.00 0.00 3.02
2875 3890 3.638160 TGAAGAAACTCTGGCAAATGCTT 59.362 39.130 5.25 0.00 41.70 3.91
2923 3938 2.350895 CCATGCGGTCTTGGTGGA 59.649 61.111 0.00 0.00 33.97 4.02
2943 3958 2.045536 GAGCTCACCTGCCCCTTG 60.046 66.667 9.40 0.00 0.00 3.61
2945 3960 3.971702 GCTCACCTGCCCCTTGGT 61.972 66.667 0.00 0.00 36.96 3.67
2958 3973 1.638589 CCCTTGGTCCCCAATTCTGTA 59.361 52.381 0.00 0.00 43.07 2.74
2967 3982 0.947244 CCAATTCTGTATCTGCGGCC 59.053 55.000 0.00 0.00 0.00 6.13
2968 3983 1.667236 CAATTCTGTATCTGCGGCCA 58.333 50.000 2.24 0.00 0.00 5.36
2970 3985 2.175878 ATTCTGTATCTGCGGCCATC 57.824 50.000 2.24 0.00 0.00 3.51
2971 3986 1.123077 TTCTGTATCTGCGGCCATCT 58.877 50.000 2.24 0.00 0.00 2.90
2974 3989 1.341209 CTGTATCTGCGGCCATCTACA 59.659 52.381 2.24 2.11 0.00 2.74
2975 3990 1.341209 TGTATCTGCGGCCATCTACAG 59.659 52.381 2.24 1.72 0.00 2.74
3030 4045 6.055231 AGAGTCTTCGATTCAATCTCTACG 57.945 41.667 0.00 0.00 0.00 3.51
3037 4052 5.763088 TCGATTCAATCTCTACGGATGAAG 58.237 41.667 0.00 0.00 0.00 3.02
3059 4074 2.170738 GCGTTGTGCATCTTAGGCA 58.829 52.632 0.00 0.00 45.45 4.75
3060 4075 0.734889 GCGTTGTGCATCTTAGGCAT 59.265 50.000 0.00 0.00 44.11 4.40
3061 4076 1.133025 GCGTTGTGCATCTTAGGCATT 59.867 47.619 0.00 0.00 44.11 3.56
3062 4077 2.415893 GCGTTGTGCATCTTAGGCATTT 60.416 45.455 0.00 0.00 44.11 2.32
3063 4078 3.429085 CGTTGTGCATCTTAGGCATTTC 58.571 45.455 0.00 0.00 44.11 2.17
3064 4079 3.127548 CGTTGTGCATCTTAGGCATTTCT 59.872 43.478 0.00 0.00 44.11 2.52
3065 4080 4.332543 CGTTGTGCATCTTAGGCATTTCTA 59.667 41.667 0.00 0.00 44.11 2.10
3066 4081 5.163764 CGTTGTGCATCTTAGGCATTTCTAA 60.164 40.000 0.00 0.00 44.11 2.10
3067 4082 5.818136 TGTGCATCTTAGGCATTTCTAAC 57.182 39.130 0.00 0.00 44.11 2.34
3068 4083 4.640201 TGTGCATCTTAGGCATTTCTAACC 59.360 41.667 0.00 0.00 44.11 2.85
3069 4084 3.876914 TGCATCTTAGGCATTTCTAACCG 59.123 43.478 0.00 0.00 36.11 4.44
3070 4085 4.127171 GCATCTTAGGCATTTCTAACCGA 58.873 43.478 0.00 0.00 0.00 4.69
3071 4086 4.757149 GCATCTTAGGCATTTCTAACCGAT 59.243 41.667 0.00 0.00 0.00 4.18
3072 4087 5.106908 GCATCTTAGGCATTTCTAACCGATC 60.107 44.000 0.00 0.00 0.00 3.69
3073 4088 4.957296 TCTTAGGCATTTCTAACCGATCC 58.043 43.478 0.00 0.00 0.00 3.36
3074 4089 2.640316 AGGCATTTCTAACCGATCCC 57.360 50.000 0.00 0.00 0.00 3.85
3075 4090 1.143073 AGGCATTTCTAACCGATCCCC 59.857 52.381 0.00 0.00 0.00 4.81
3076 4091 1.143073 GGCATTTCTAACCGATCCCCT 59.857 52.381 0.00 0.00 0.00 4.79
3077 4092 2.370849 GGCATTTCTAACCGATCCCCTA 59.629 50.000 0.00 0.00 0.00 3.53
3078 4093 3.181448 GGCATTTCTAACCGATCCCCTAA 60.181 47.826 0.00 0.00 0.00 2.69
3079 4094 4.457466 GCATTTCTAACCGATCCCCTAAA 58.543 43.478 0.00 0.00 0.00 1.85
3080 4095 4.885325 GCATTTCTAACCGATCCCCTAAAA 59.115 41.667 0.00 0.00 0.00 1.52
3081 4096 5.358725 GCATTTCTAACCGATCCCCTAAAAA 59.641 40.000 0.00 0.00 0.00 1.94
3082 4097 6.040504 GCATTTCTAACCGATCCCCTAAAAAT 59.959 38.462 0.00 0.00 0.00 1.82
3083 4098 7.229907 GCATTTCTAACCGATCCCCTAAAAATA 59.770 37.037 0.00 0.00 0.00 1.40
3084 4099 8.784043 CATTTCTAACCGATCCCCTAAAAATAG 58.216 37.037 0.00 0.00 0.00 1.73
3085 4100 5.861727 TCTAACCGATCCCCTAAAAATAGC 58.138 41.667 0.00 0.00 0.00 2.97
3086 4101 3.121738 ACCGATCCCCTAAAAATAGCG 57.878 47.619 0.00 0.00 0.00 4.26
3087 4102 2.224450 ACCGATCCCCTAAAAATAGCGG 60.224 50.000 0.00 0.00 41.72 5.52
3088 4103 2.038033 CCGATCCCCTAAAAATAGCGGA 59.962 50.000 0.00 0.00 38.57 5.54
3089 4104 3.326747 CGATCCCCTAAAAATAGCGGAG 58.673 50.000 0.00 0.00 28.56 4.63
3090 4105 3.244112 CGATCCCCTAAAAATAGCGGAGT 60.244 47.826 0.00 0.00 28.56 3.85
3091 4106 4.021719 CGATCCCCTAAAAATAGCGGAGTA 60.022 45.833 0.00 0.00 28.56 2.59
3092 4107 5.337330 CGATCCCCTAAAAATAGCGGAGTAT 60.337 44.000 0.00 0.00 28.56 2.12
3093 4108 5.479124 TCCCCTAAAAATAGCGGAGTATC 57.521 43.478 0.00 0.00 0.00 2.24
3112 4127 8.620116 GAGTATCCGTCCTAGTAAATCTTAGT 57.380 38.462 0.00 0.00 0.00 2.24
3113 4128 8.393671 AGTATCCGTCCTAGTAAATCTTAGTG 57.606 38.462 0.00 0.00 0.00 2.74
3114 4129 6.651975 ATCCGTCCTAGTAAATCTTAGTGG 57.348 41.667 0.00 0.00 0.00 4.00
3115 4130 5.759059 TCCGTCCTAGTAAATCTTAGTGGA 58.241 41.667 0.00 0.00 0.00 4.02
3116 4131 5.826737 TCCGTCCTAGTAAATCTTAGTGGAG 59.173 44.000 0.00 0.00 0.00 3.86
3117 4132 5.593502 CCGTCCTAGTAAATCTTAGTGGAGT 59.406 44.000 0.00 0.00 0.00 3.85
3118 4133 6.769822 CCGTCCTAGTAAATCTTAGTGGAGTA 59.230 42.308 0.00 0.00 0.00 2.59
3119 4134 7.284034 CCGTCCTAGTAAATCTTAGTGGAGTAA 59.716 40.741 0.00 0.00 0.00 2.24
3120 4135 8.680903 CGTCCTAGTAAATCTTAGTGGAGTAAA 58.319 37.037 0.00 0.00 0.00 2.01
3133 4148 8.785468 TTAGTGGAGTAAAAACGTAAATTTGC 57.215 30.769 0.00 0.00 0.00 3.68
3134 4149 6.797454 AGTGGAGTAAAAACGTAAATTTGCA 58.203 32.000 7.07 0.00 0.00 4.08
3135 4150 7.430441 AGTGGAGTAAAAACGTAAATTTGCAT 58.570 30.769 7.07 0.00 0.00 3.96
3136 4151 8.569641 AGTGGAGTAAAAACGTAAATTTGCATA 58.430 29.630 7.07 0.00 0.00 3.14
3137 4152 9.182933 GTGGAGTAAAAACGTAAATTTGCATAA 57.817 29.630 7.07 0.00 0.00 1.90
3138 4153 9.745880 TGGAGTAAAAACGTAAATTTGCATAAA 57.254 25.926 7.07 0.00 0.00 1.40
3157 4172 9.299963 TGCATAAATTCAATCTAATTTCAACCG 57.700 29.630 0.00 0.00 39.27 4.44
3158 4173 9.515020 GCATAAATTCAATCTAATTTCAACCGA 57.485 29.630 0.00 0.00 39.27 4.69
3170 4185 2.808523 TCAACCGAAATTTGCATGCA 57.191 40.000 18.46 18.46 0.00 3.96
3171 4186 3.316071 TCAACCGAAATTTGCATGCAT 57.684 38.095 23.37 6.15 0.00 3.96
3172 4187 3.661944 TCAACCGAAATTTGCATGCATT 58.338 36.364 23.37 13.42 0.00 3.56
3173 4188 4.063689 TCAACCGAAATTTGCATGCATTT 58.936 34.783 23.37 19.72 0.00 2.32
3174 4189 5.233225 TCAACCGAAATTTGCATGCATTTA 58.767 33.333 23.37 10.66 0.00 1.40
3175 4190 5.698089 TCAACCGAAATTTGCATGCATTTAA 59.302 32.000 23.37 13.77 0.00 1.52
3176 4191 5.529014 ACCGAAATTTGCATGCATTTAAC 57.471 34.783 23.37 12.26 0.00 2.01
3177 4192 4.993584 ACCGAAATTTGCATGCATTTAACA 59.006 33.333 23.37 1.46 0.00 2.41
3178 4193 5.642919 ACCGAAATTTGCATGCATTTAACAT 59.357 32.000 23.37 5.48 0.00 2.71
3179 4194 6.815641 ACCGAAATTTGCATGCATTTAACATA 59.184 30.769 23.37 0.00 0.00 2.29
3180 4195 7.332926 ACCGAAATTTGCATGCATTTAACATAA 59.667 29.630 23.37 10.54 0.00 1.90
3181 4196 7.847078 CCGAAATTTGCATGCATTTAACATAAG 59.153 33.333 23.37 6.37 0.00 1.73
3182 4197 8.382130 CGAAATTTGCATGCATTTAACATAAGT 58.618 29.630 23.37 6.41 0.00 2.24
3188 4203 9.481340 TTGCATGCATTTAACATAAGTTTAACA 57.519 25.926 23.37 0.00 39.15 2.41
3189 4204 9.650539 TGCATGCATTTAACATAAGTTTAACAT 57.349 25.926 18.46 0.00 39.15 2.71
3211 4226 9.686683 AACATAGATAGTCTTTACAAGCCAAAT 57.313 29.630 0.00 0.00 0.00 2.32
3212 4227 9.686683 ACATAGATAGTCTTTACAAGCCAAATT 57.313 29.630 0.00 0.00 0.00 1.82
3221 4236 9.908152 GTCTTTACAAGCCAAATTAAACATAGT 57.092 29.630 0.00 0.00 0.00 2.12
3226 4241 8.587952 ACAAGCCAAATTAAACATAGTTCAAC 57.412 30.769 0.00 0.00 0.00 3.18
3227 4242 8.200792 ACAAGCCAAATTAAACATAGTTCAACA 58.799 29.630 0.00 0.00 0.00 3.33
3228 4243 9.206870 CAAGCCAAATTAAACATAGTTCAACAT 57.793 29.630 0.00 0.00 0.00 2.71
3276 4291 8.126700 ACACTAAAAACTACTCAAATTCAACGG 58.873 33.333 0.00 0.00 0.00 4.44
3277 4292 8.126700 CACTAAAAACTACTCAAATTCAACGGT 58.873 33.333 0.00 0.00 0.00 4.83
3278 4293 8.340443 ACTAAAAACTACTCAAATTCAACGGTC 58.660 33.333 0.00 0.00 0.00 4.79
3279 4294 4.985044 AACTACTCAAATTCAACGGTCG 57.015 40.909 0.00 0.00 0.00 4.79
3280 4295 4.247267 ACTACTCAAATTCAACGGTCGA 57.753 40.909 0.00 0.00 0.00 4.20
3281 4296 4.624015 ACTACTCAAATTCAACGGTCGAA 58.376 39.130 0.00 0.00 0.00 3.71
3282 4297 4.684703 ACTACTCAAATTCAACGGTCGAAG 59.315 41.667 0.00 0.00 0.00 3.79
3283 4298 3.463944 ACTCAAATTCAACGGTCGAAGT 58.536 40.909 0.00 0.00 0.00 3.01
3284 4299 3.247648 ACTCAAATTCAACGGTCGAAGTG 59.752 43.478 0.00 0.00 0.00 3.16
3285 4300 2.546368 TCAAATTCAACGGTCGAAGTGG 59.454 45.455 0.00 0.00 0.00 4.00
3286 4301 2.536761 AATTCAACGGTCGAAGTGGA 57.463 45.000 0.00 0.00 0.00 4.02
3287 4302 2.080286 ATTCAACGGTCGAAGTGGAG 57.920 50.000 0.00 0.00 0.00 3.86
3288 4303 0.032952 TTCAACGGTCGAAGTGGAGG 59.967 55.000 0.00 0.00 0.00 4.30
3289 4304 1.111116 TCAACGGTCGAAGTGGAGGT 61.111 55.000 0.00 0.00 0.00 3.85
3290 4305 0.666577 CAACGGTCGAAGTGGAGGTC 60.667 60.000 0.00 0.00 0.00 3.85
3291 4306 2.138656 AACGGTCGAAGTGGAGGTCG 62.139 60.000 0.00 0.00 38.62 4.79
3292 4307 2.330372 CGGTCGAAGTGGAGGTCGA 61.330 63.158 0.00 0.00 43.61 4.20
3293 4308 1.507174 GGTCGAAGTGGAGGTCGAG 59.493 63.158 0.00 0.00 46.18 4.04
3294 4309 1.153997 GTCGAAGTGGAGGTCGAGC 60.154 63.158 6.48 6.48 46.18 5.03
3295 4310 2.182030 CGAAGTGGAGGTCGAGCC 59.818 66.667 11.73 3.31 39.64 4.70
3296 4311 2.636412 CGAAGTGGAGGTCGAGCCA 61.636 63.158 11.73 4.11 39.64 4.75
3297 4312 1.671742 GAAGTGGAGGTCGAGCCAA 59.328 57.895 11.73 0.00 40.61 4.52
3298 4313 0.250513 GAAGTGGAGGTCGAGCCAAT 59.749 55.000 11.73 3.41 40.61 3.16
3299 4314 0.250513 AAGTGGAGGTCGAGCCAATC 59.749 55.000 11.73 2.14 40.61 2.67
3300 4315 1.153349 GTGGAGGTCGAGCCAATCC 60.153 63.158 11.73 12.47 40.61 3.01
3301 4316 1.306141 TGGAGGTCGAGCCAATCCT 60.306 57.895 18.68 6.35 40.61 3.24
3302 4317 0.909610 TGGAGGTCGAGCCAATCCTT 60.910 55.000 18.68 0.00 40.61 3.36
3303 4318 0.179070 GGAGGTCGAGCCAATCCTTC 60.179 60.000 11.73 0.00 40.61 3.46
3304 4319 0.179070 GAGGTCGAGCCAATCCTTCC 60.179 60.000 11.73 0.00 40.61 3.46
3305 4320 0.618968 AGGTCGAGCCAATCCTTCCT 60.619 55.000 11.73 0.00 40.61 3.36
3306 4321 0.179070 GGTCGAGCCAATCCTTCCTC 60.179 60.000 2.39 0.00 37.17 3.71
3307 4322 0.528684 GTCGAGCCAATCCTTCCTCG 60.529 60.000 2.78 2.78 46.11 4.63
3308 4323 0.970937 TCGAGCCAATCCTTCCTCGT 60.971 55.000 8.48 0.00 45.27 4.18
3309 4324 0.528684 CGAGCCAATCCTTCCTCGTC 60.529 60.000 0.00 0.00 41.47 4.20
3310 4325 0.537188 GAGCCAATCCTTCCTCGTCA 59.463 55.000 0.00 0.00 0.00 4.35
3311 4326 0.539051 AGCCAATCCTTCCTCGTCAG 59.461 55.000 0.00 0.00 0.00 3.51
3312 4327 0.462759 GCCAATCCTTCCTCGTCAGG 60.463 60.000 0.00 0.00 42.01 3.86
3313 4328 0.462759 CCAATCCTTCCTCGTCAGGC 60.463 60.000 0.00 0.00 40.12 4.85
3314 4329 0.462759 CAATCCTTCCTCGTCAGGCC 60.463 60.000 0.00 0.00 40.12 5.19
3315 4330 0.909610 AATCCTTCCTCGTCAGGCCA 60.910 55.000 5.01 0.00 40.12 5.36
3316 4331 1.617947 ATCCTTCCTCGTCAGGCCAC 61.618 60.000 5.01 0.00 40.12 5.01
3317 4332 2.266055 CTTCCTCGTCAGGCCACC 59.734 66.667 5.01 0.00 40.12 4.61
3318 4333 3.316573 CTTCCTCGTCAGGCCACCC 62.317 68.421 5.01 0.00 40.12 4.61
3319 4334 3.846405 TTCCTCGTCAGGCCACCCT 62.846 63.158 5.01 0.00 44.25 4.34
3320 4335 3.322466 CCTCGTCAGGCCACCCTT 61.322 66.667 5.01 0.00 40.33 3.95
3321 4336 2.046892 CTCGTCAGGCCACCCTTG 60.047 66.667 5.01 0.00 40.33 3.61
3323 4338 3.953775 CGTCAGGCCACCCTTGGT 61.954 66.667 5.01 0.00 45.98 3.67
3332 4347 3.488423 ACCCTTGGTGAGAGCTGG 58.512 61.111 0.00 0.00 32.98 4.85
3333 4348 2.227036 ACCCTTGGTGAGAGCTGGG 61.227 63.158 0.00 0.00 36.60 4.45
3334 4349 2.227036 CCCTTGGTGAGAGCTGGGT 61.227 63.158 0.00 0.00 0.00 4.51
3335 4350 1.298014 CCTTGGTGAGAGCTGGGTC 59.702 63.158 0.00 0.00 0.00 4.46
3336 4351 1.298014 CTTGGTGAGAGCTGGGTCC 59.702 63.158 0.00 0.00 0.00 4.46
3337 4352 2.513026 CTTGGTGAGAGCTGGGTCCG 62.513 65.000 0.00 0.00 0.00 4.79
3338 4353 3.775654 GGTGAGAGCTGGGTCCGG 61.776 72.222 0.00 0.00 0.00 5.14
3339 4354 3.775654 GTGAGAGCTGGGTCCGGG 61.776 72.222 0.00 0.00 0.00 5.73
3358 4373 4.771356 CGGTGCCATCGTCGTCGT 62.771 66.667 1.33 0.00 38.33 4.34
3359 4374 2.879462 GGTGCCATCGTCGTCGTC 60.879 66.667 1.33 0.00 38.33 4.20
3360 4375 3.238241 GTGCCATCGTCGTCGTCG 61.238 66.667 5.50 5.50 38.33 5.12
3366 4381 3.792047 TCGTCGTCGTCGCCGATT 61.792 61.111 3.81 0.00 46.30 3.34
3367 4382 3.594827 CGTCGTCGTCGCCGATTG 61.595 66.667 0.29 0.00 46.30 2.67
3368 4383 2.202388 GTCGTCGTCGCCGATTGA 60.202 61.111 0.29 0.00 46.30 2.57
3369 4384 2.202388 TCGTCGTCGCCGATTGAC 60.202 61.111 11.11 11.11 46.30 3.18
3381 4396 2.837337 CGATTGACGGCGAATATCAC 57.163 50.000 16.62 0.00 38.46 3.06
3382 4397 1.455786 CGATTGACGGCGAATATCACC 59.544 52.381 16.62 0.44 38.46 4.02
3383 4398 1.798813 GATTGACGGCGAATATCACCC 59.201 52.381 16.62 0.00 0.00 4.61
3384 4399 0.528901 TTGACGGCGAATATCACCCG 60.529 55.000 16.62 6.40 45.80 5.28
3385 4400 2.279918 ACGGCGAATATCACCCGC 60.280 61.111 16.62 0.00 44.29 6.13
3388 4403 3.952811 GCGAATATCACCCGCTCC 58.047 61.111 0.00 0.00 44.83 4.70
3389 4404 2.022129 GCGAATATCACCCGCTCCG 61.022 63.158 0.00 0.00 44.83 4.63
3411 4426 4.154347 CTGCCAGCGGAGGTCCTC 62.154 72.222 10.78 10.78 33.74 3.71
3421 4436 1.442148 GAGGTCCTCCATGTACGCC 59.558 63.158 7.78 0.00 35.89 5.68
3422 4437 1.001760 AGGTCCTCCATGTACGCCT 59.998 57.895 0.00 0.00 35.89 5.52
3423 4438 1.043673 AGGTCCTCCATGTACGCCTC 61.044 60.000 0.00 0.00 35.89 4.70
3424 4439 1.327690 GGTCCTCCATGTACGCCTCA 61.328 60.000 0.00 0.00 0.00 3.86
3425 4440 0.753262 GTCCTCCATGTACGCCTCAT 59.247 55.000 0.00 0.00 0.00 2.90
3426 4441 1.040646 TCCTCCATGTACGCCTCATC 58.959 55.000 0.00 0.00 0.00 2.92
3427 4442 0.319040 CCTCCATGTACGCCTCATCG 60.319 60.000 0.00 0.00 0.00 3.84
3428 4443 0.319040 CTCCATGTACGCCTCATCGG 60.319 60.000 0.00 0.00 0.00 4.18
3465 4480 3.213402 CTCCCTCGCCTCTCGGTC 61.213 72.222 0.00 0.00 39.05 4.79
3466 4481 4.816984 TCCCTCGCCTCTCGGTCC 62.817 72.222 0.00 0.00 39.05 4.46
3467 4482 4.824515 CCCTCGCCTCTCGGTCCT 62.825 72.222 0.00 0.00 39.05 3.85
3468 4483 3.522731 CCTCGCCTCTCGGTCCTG 61.523 72.222 0.00 0.00 39.05 3.86
3469 4484 4.200283 CTCGCCTCTCGGTCCTGC 62.200 72.222 0.00 0.00 39.05 4.85
3488 4503 2.817834 GTGCCATCGCCGTGCTAA 60.818 61.111 0.00 0.00 0.00 3.09
3489 4504 2.817834 TGCCATCGCCGTGCTAAC 60.818 61.111 0.00 0.00 0.00 2.34
3490 4505 3.573491 GCCATCGCCGTGCTAACC 61.573 66.667 0.00 0.00 0.00 2.85
3491 4506 2.125310 CCATCGCCGTGCTAACCA 60.125 61.111 0.00 0.00 0.00 3.67
3492 4507 2.461110 CCATCGCCGTGCTAACCAC 61.461 63.158 0.00 0.00 41.15 4.16
3493 4508 2.125269 ATCGCCGTGCTAACCACC 60.125 61.111 0.00 0.00 41.53 4.61
3494 4509 3.675619 ATCGCCGTGCTAACCACCC 62.676 63.158 0.00 0.00 41.53 4.61
3495 4510 4.388499 CGCCGTGCTAACCACCCT 62.388 66.667 0.00 0.00 41.53 4.34
3496 4511 2.436115 GCCGTGCTAACCACCCTC 60.436 66.667 0.00 0.00 41.53 4.30
3497 4512 2.125673 CCGTGCTAACCACCCTCG 60.126 66.667 0.00 0.00 41.53 4.63
3498 4513 2.125673 CGTGCTAACCACCCTCGG 60.126 66.667 0.00 0.00 41.53 4.63
3499 4514 2.436115 GTGCTAACCACCCTCGGC 60.436 66.667 0.00 0.00 38.55 5.54
3500 4515 2.606519 TGCTAACCACCCTCGGCT 60.607 61.111 0.00 0.00 0.00 5.52
3501 4516 2.221299 TGCTAACCACCCTCGGCTT 61.221 57.895 0.00 0.00 0.00 4.35
3502 4517 1.002502 GCTAACCACCCTCGGCTTT 60.003 57.895 0.00 0.00 0.00 3.51
3503 4518 1.305930 GCTAACCACCCTCGGCTTTG 61.306 60.000 0.00 0.00 0.00 2.77
3504 4519 0.676782 CTAACCACCCTCGGCTTTGG 60.677 60.000 0.00 0.00 35.06 3.28
3505 4520 2.757980 TAACCACCCTCGGCTTTGGC 62.758 60.000 0.00 0.00 31.76 4.52
3523 4538 4.035843 GGGACGAGGTGGATCAGT 57.964 61.111 0.00 0.00 0.00 3.41
3524 4539 1.517832 GGGACGAGGTGGATCAGTG 59.482 63.158 0.00 0.00 0.00 3.66
3525 4540 1.153549 GGACGAGGTGGATCAGTGC 60.154 63.158 0.00 0.00 0.00 4.40
3526 4541 1.608717 GGACGAGGTGGATCAGTGCT 61.609 60.000 0.00 0.00 0.00 4.40
3527 4542 0.459237 GACGAGGTGGATCAGTGCTG 60.459 60.000 0.00 0.00 0.00 4.41
3528 4543 1.188219 ACGAGGTGGATCAGTGCTGT 61.188 55.000 0.00 0.00 0.00 4.40
3529 4544 0.459237 CGAGGTGGATCAGTGCTGTC 60.459 60.000 0.00 0.00 0.00 3.51
3530 4545 0.107945 GAGGTGGATCAGTGCTGTCC 60.108 60.000 11.33 11.33 33.97 4.02
3531 4546 1.078143 GGTGGATCAGTGCTGTCCC 60.078 63.158 13.95 10.17 33.08 4.46
3532 4547 1.448540 GTGGATCAGTGCTGTCCCG 60.449 63.158 13.95 0.00 33.08 5.14
3533 4548 1.609210 TGGATCAGTGCTGTCCCGA 60.609 57.895 13.95 0.00 33.08 5.14
3534 4549 1.191489 TGGATCAGTGCTGTCCCGAA 61.191 55.000 13.95 0.05 33.08 4.30
3535 4550 0.460987 GGATCAGTGCTGTCCCGAAG 60.461 60.000 0.00 0.00 0.00 3.79
3549 4564 2.763651 CGAAGGGGAAGTTTAGCCG 58.236 57.895 0.00 0.00 0.00 5.52
3550 4565 0.743345 CGAAGGGGAAGTTTAGCCGG 60.743 60.000 0.00 0.00 0.00 6.13
3551 4566 0.393944 GAAGGGGAAGTTTAGCCGGG 60.394 60.000 2.18 0.00 0.00 5.73
3552 4567 2.439701 GGGGAAGTTTAGCCGGGC 60.440 66.667 12.11 12.11 0.00 6.13
3553 4568 2.822701 GGGAAGTTTAGCCGGGCG 60.823 66.667 14.39 0.00 0.00 6.13
3554 4569 2.822701 GGAAGTTTAGCCGGGCGG 60.823 66.667 14.39 0.00 38.57 6.13
3575 4590 4.705519 CGCCGTGGTACCGAACGT 62.706 66.667 19.85 0.00 38.11 3.99
3576 4591 2.566010 GCCGTGGTACCGAACGTA 59.434 61.111 19.85 0.00 38.11 3.57
3577 4592 1.801512 GCCGTGGTACCGAACGTAC 60.802 63.158 19.85 10.43 45.76 3.67
3578 4593 1.875963 CCGTGGTACCGAACGTACT 59.124 57.895 19.85 0.00 45.76 2.73
3579 4594 0.179189 CCGTGGTACCGAACGTACTC 60.179 60.000 19.85 0.00 45.76 2.59
3580 4595 0.179189 CGTGGTACCGAACGTACTCC 60.179 60.000 14.88 0.00 45.76 3.85
3581 4596 0.881118 GTGGTACCGAACGTACTCCA 59.119 55.000 7.57 0.00 45.76 3.86
3582 4597 1.474077 GTGGTACCGAACGTACTCCAT 59.526 52.381 7.57 0.00 45.76 3.41
3583 4598 1.473677 TGGTACCGAACGTACTCCATG 59.526 52.381 7.57 0.00 45.76 3.66
3584 4599 1.202336 GGTACCGAACGTACTCCATGG 60.202 57.143 4.97 4.97 45.76 3.66
3585 4600 0.457035 TACCGAACGTACTCCATGGC 59.543 55.000 6.96 0.00 0.00 4.40
3586 4601 1.520787 CCGAACGTACTCCATGGCC 60.521 63.158 6.96 0.00 0.00 5.36
3587 4602 1.876714 CGAACGTACTCCATGGCCG 60.877 63.158 6.96 9.02 0.00 6.13
3588 4603 2.125269 AACGTACTCCATGGCCGC 60.125 61.111 6.96 0.00 0.00 6.53
3589 4604 4.508128 ACGTACTCCATGGCCGCG 62.508 66.667 6.96 11.20 0.00 6.46
3590 4605 4.201679 CGTACTCCATGGCCGCGA 62.202 66.667 8.23 0.00 0.00 5.87
3591 4606 2.279517 GTACTCCATGGCCGCGAG 60.280 66.667 8.23 11.01 0.00 5.03
3592 4607 4.221422 TACTCCATGGCCGCGAGC 62.221 66.667 8.23 9.71 42.60 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
322 324 1.333636 CCGTCCAGATGAGCTCCCTT 61.334 60.000 12.15 0.00 0.00 3.95
414 416 2.126071 CTGTGTACAGGGCGGTCG 60.126 66.667 0.00 0.00 40.20 4.79
511 513 2.203422 CGCTGGGTTTGGGGTGAA 60.203 61.111 0.00 0.00 0.00 3.18
844 849 1.152943 TGAGCGCTATCTCTCCGGT 60.153 57.895 11.50 0.00 34.29 5.28
945 950 4.601794 TGGGCTGCTGTGTTGGGG 62.602 66.667 0.00 0.00 0.00 4.96
975 980 0.309302 CGAGGATGATCTTCGCGAGT 59.691 55.000 13.89 0.00 39.05 4.18
1279 1284 7.407393 TGATTTTGCATCATAAGGAACATGA 57.593 32.000 0.00 0.00 36.86 3.07
1280 1285 9.923143 ATATGATTTTGCATCATAAGGAACATG 57.077 29.630 11.48 0.00 42.27 3.21
1378 1386 4.922692 TGCGAAATAAATGTTGCCTCTTTG 59.077 37.500 0.00 0.00 0.00 2.77
1741 1752 9.574516 ACATTAAAATCTATTAAGCGGGATCTT 57.425 29.630 0.00 0.00 0.00 2.40
1792 1803 6.998074 TGTTCAACATCAGGTACTTCATCTTT 59.002 34.615 0.00 0.00 34.60 2.52
1818 1829 4.437239 AGCATAACTGATGACACAGCTAC 58.563 43.478 0.00 0.00 41.06 3.58
1958 1973 9.109393 TGCATAAAGATGACTCAGGTTAATTAC 57.891 33.333 0.00 0.00 34.73 1.89
2123 2138 6.879458 AGTGACTTACAGACAAGACAAACTTT 59.121 34.615 0.00 0.00 36.61 2.66
2137 2152 3.393800 CAGGGTGAACAGTGACTTACAG 58.606 50.000 0.00 0.00 0.00 2.74
2195 2242 5.041191 AGATCAAAGGCCGAGACATTTAT 57.959 39.130 0.00 0.00 0.00 1.40
2205 2255 2.691409 TACCTGAAGATCAAAGGCCG 57.309 50.000 0.00 0.00 34.18 6.13
2392 3184 2.159627 GGTGTCCAATGTAAAGCACTCG 59.840 50.000 0.00 0.00 0.00 4.18
2399 3191 3.750371 CAGGAGTGGTGTCCAATGTAAA 58.250 45.455 0.00 0.00 39.34 2.01
2519 3311 1.935933 ACTTTCCCGTCGATGTATGC 58.064 50.000 3.52 0.00 0.00 3.14
2577 3369 0.973632 TCACAGAGCATAACACCGGT 59.026 50.000 0.00 0.00 0.00 5.28
2723 3623 7.472334 AATTGGATTGTCTGCTGATAAGTTT 57.528 32.000 8.62 0.00 0.00 2.66
2724 3624 7.472334 AAATTGGATTGTCTGCTGATAAGTT 57.528 32.000 8.62 0.00 0.00 2.66
2772 3672 1.915141 AACTCAATCCACAGCAAGGG 58.085 50.000 0.00 0.00 0.00 3.95
2801 3711 1.603456 TTTCGGCATGACTTCAAGCA 58.397 45.000 8.57 0.00 41.83 3.91
2807 3717 4.615912 GCATACAACTTTTCGGCATGACTT 60.616 41.667 0.00 0.00 0.00 3.01
2820 3730 9.042008 CCTAGTTTACATTATCGCATACAACTT 57.958 33.333 0.00 0.00 0.00 2.66
2830 3845 8.642908 TCATCACAACCTAGTTTACATTATCG 57.357 34.615 0.00 0.00 0.00 2.92
2845 3860 3.057946 GCCAGAGTTTCTTCATCACAACC 60.058 47.826 0.00 0.00 0.00 3.77
2846 3861 3.565482 TGCCAGAGTTTCTTCATCACAAC 59.435 43.478 0.00 0.00 0.00 3.32
2875 3890 6.671190 CAGATTCAGCATTGTTGAACAGTTA 58.329 36.000 16.75 0.00 37.38 2.24
2913 3928 2.079925 GTGAGCTCATTCCACCAAGAC 58.920 52.381 21.47 0.00 0.00 3.01
2923 3938 1.504275 AAGGGGCAGGTGAGCTCATT 61.504 55.000 21.47 8.86 36.47 2.57
2945 3960 1.140852 CCGCAGATACAGAATTGGGGA 59.859 52.381 0.64 0.00 43.93 4.81
2958 3973 0.833287 AACTGTAGATGGCCGCAGAT 59.167 50.000 14.87 3.89 33.57 2.90
2967 3982 3.340814 AGGTTCCAGCAACTGTAGATG 57.659 47.619 0.00 0.00 35.06 2.90
2968 3983 4.074970 CAAAGGTTCCAGCAACTGTAGAT 58.925 43.478 0.00 0.00 35.06 1.98
2970 3985 2.554032 CCAAAGGTTCCAGCAACTGTAG 59.446 50.000 0.00 0.00 35.06 2.74
2971 3986 2.173782 TCCAAAGGTTCCAGCAACTGTA 59.826 45.455 0.00 0.00 35.06 2.74
2974 3989 2.310538 CTTCCAAAGGTTCCAGCAACT 58.689 47.619 0.00 0.00 35.06 3.16
2975 3990 1.341209 CCTTCCAAAGGTTCCAGCAAC 59.659 52.381 0.00 0.00 43.95 4.17
2999 4014 5.713792 TGAATCGAAGACTCTTCTGTTCT 57.286 39.130 21.43 5.58 42.51 3.01
3030 4045 1.503542 CACAACGCCAGCTTCATCC 59.496 57.895 0.00 0.00 0.00 3.51
3037 4052 0.097674 CTAAGATGCACAACGCCAGC 59.902 55.000 0.00 0.00 41.33 4.85
3056 4071 1.143073 AGGGGATCGGTTAGAAATGCC 59.857 52.381 0.00 0.00 0.00 4.40
3057 4072 2.640316 AGGGGATCGGTTAGAAATGC 57.360 50.000 0.00 0.00 0.00 3.56
3058 4073 7.582667 ATTTTTAGGGGATCGGTTAGAAATG 57.417 36.000 0.00 0.00 0.00 2.32
3059 4074 7.447545 GCTATTTTTAGGGGATCGGTTAGAAAT 59.552 37.037 0.00 0.00 0.00 2.17
3060 4075 6.769341 GCTATTTTTAGGGGATCGGTTAGAAA 59.231 38.462 0.00 0.00 0.00 2.52
3061 4076 6.293698 GCTATTTTTAGGGGATCGGTTAGAA 58.706 40.000 0.00 0.00 0.00 2.10
3062 4077 5.510179 CGCTATTTTTAGGGGATCGGTTAGA 60.510 44.000 0.00 0.00 0.00 2.10
3063 4078 4.689345 CGCTATTTTTAGGGGATCGGTTAG 59.311 45.833 0.00 0.00 0.00 2.34
3064 4079 4.634199 CGCTATTTTTAGGGGATCGGTTA 58.366 43.478 0.00 0.00 0.00 2.85
3065 4080 3.473625 CGCTATTTTTAGGGGATCGGTT 58.526 45.455 0.00 0.00 0.00 4.44
3066 4081 3.121738 CGCTATTTTTAGGGGATCGGT 57.878 47.619 0.00 0.00 0.00 4.69
3086 4101 6.897706 AAGATTTACTAGGACGGATACTCC 57.102 41.667 0.00 0.00 35.03 3.85
3087 4102 8.505625 CACTAAGATTTACTAGGACGGATACTC 58.494 40.741 0.00 0.00 0.00 2.59
3088 4103 7.447853 CCACTAAGATTTACTAGGACGGATACT 59.552 40.741 0.00 0.00 0.00 2.12
3089 4104 7.446625 TCCACTAAGATTTACTAGGACGGATAC 59.553 40.741 0.00 0.00 0.00 2.24
3090 4105 7.520798 TCCACTAAGATTTACTAGGACGGATA 58.479 38.462 0.00 0.00 0.00 2.59
3091 4106 6.371278 TCCACTAAGATTTACTAGGACGGAT 58.629 40.000 0.00 0.00 0.00 4.18
3092 4107 5.759059 TCCACTAAGATTTACTAGGACGGA 58.241 41.667 0.00 0.00 0.00 4.69
3093 4108 5.593502 ACTCCACTAAGATTTACTAGGACGG 59.406 44.000 0.00 0.00 0.00 4.79
3094 4109 6.696441 ACTCCACTAAGATTTACTAGGACG 57.304 41.667 0.00 0.00 0.00 4.79
3107 4122 8.898792 GCAAATTTACGTTTTTACTCCACTAAG 58.101 33.333 0.00 0.00 0.00 2.18
3108 4123 8.404000 TGCAAATTTACGTTTTTACTCCACTAA 58.596 29.630 0.00 0.00 0.00 2.24
3109 4124 7.928103 TGCAAATTTACGTTTTTACTCCACTA 58.072 30.769 0.00 0.00 0.00 2.74
3110 4125 6.797454 TGCAAATTTACGTTTTTACTCCACT 58.203 32.000 0.00 0.00 0.00 4.00
3111 4126 7.631915 ATGCAAATTTACGTTTTTACTCCAC 57.368 32.000 0.00 0.00 0.00 4.02
3112 4127 9.745880 TTTATGCAAATTTACGTTTTTACTCCA 57.254 25.926 0.00 0.00 0.00 3.86
3131 4146 9.299963 CGGTTGAAATTAGATTGAATTTATGCA 57.700 29.630 0.00 0.00 38.76 3.96
3132 4147 9.515020 TCGGTTGAAATTAGATTGAATTTATGC 57.485 29.630 0.00 0.00 38.76 3.14
3150 4165 3.103447 TGCATGCAAATTTCGGTTGAA 57.897 38.095 20.30 0.00 0.00 2.69
3151 4166 2.808523 TGCATGCAAATTTCGGTTGA 57.191 40.000 20.30 0.00 0.00 3.18
3152 4167 4.407496 AAATGCATGCAAATTTCGGTTG 57.593 36.364 26.68 0.00 0.00 3.77
3153 4168 5.468072 TGTTAAATGCATGCAAATTTCGGTT 59.532 32.000 26.68 8.90 0.00 4.44
3154 4169 4.993584 TGTTAAATGCATGCAAATTTCGGT 59.006 33.333 26.68 1.67 0.00 4.69
3155 4170 5.527511 TGTTAAATGCATGCAAATTTCGG 57.472 34.783 26.68 0.00 0.00 4.30
3156 4171 8.382130 ACTTATGTTAAATGCATGCAAATTTCG 58.618 29.630 26.68 8.75 0.00 3.46
3162 4177 9.481340 TGTTAAACTTATGTTAAATGCATGCAA 57.519 25.926 26.68 7.30 34.96 4.08
3163 4178 9.650539 ATGTTAAACTTATGTTAAATGCATGCA 57.349 25.926 25.04 25.04 34.96 3.96
3200 4215 9.685828 GTTGAACTATGTTTAATTTGGCTTGTA 57.314 29.630 0.00 0.00 0.00 2.41
3201 4216 8.200792 TGTTGAACTATGTTTAATTTGGCTTGT 58.799 29.630 0.00 0.00 0.00 3.16
3202 4217 8.586570 TGTTGAACTATGTTTAATTTGGCTTG 57.413 30.769 0.00 0.00 0.00 4.01
3250 4265 8.126700 CCGTTGAATTTGAGTAGTTTTTAGTGT 58.873 33.333 0.00 0.00 0.00 3.55
3251 4266 8.126700 ACCGTTGAATTTGAGTAGTTTTTAGTG 58.873 33.333 0.00 0.00 0.00 2.74
3252 4267 8.217131 ACCGTTGAATTTGAGTAGTTTTTAGT 57.783 30.769 0.00 0.00 0.00 2.24
3253 4268 7.529519 CGACCGTTGAATTTGAGTAGTTTTTAG 59.470 37.037 0.00 0.00 0.00 1.85
3254 4269 7.224362 TCGACCGTTGAATTTGAGTAGTTTTTA 59.776 33.333 0.00 0.00 0.00 1.52
3255 4270 6.037391 TCGACCGTTGAATTTGAGTAGTTTTT 59.963 34.615 0.00 0.00 0.00 1.94
3256 4271 5.524646 TCGACCGTTGAATTTGAGTAGTTTT 59.475 36.000 0.00 0.00 0.00 2.43
3257 4272 5.051816 TCGACCGTTGAATTTGAGTAGTTT 58.948 37.500 0.00 0.00 0.00 2.66
3258 4273 4.624015 TCGACCGTTGAATTTGAGTAGTT 58.376 39.130 0.00 0.00 0.00 2.24
3259 4274 4.247267 TCGACCGTTGAATTTGAGTAGT 57.753 40.909 0.00 0.00 0.00 2.73
3260 4275 4.684703 ACTTCGACCGTTGAATTTGAGTAG 59.315 41.667 1.50 0.00 0.00 2.57
3261 4276 4.446385 CACTTCGACCGTTGAATTTGAGTA 59.554 41.667 1.50 0.00 0.00 2.59
3262 4277 3.247648 CACTTCGACCGTTGAATTTGAGT 59.752 43.478 1.50 0.00 0.00 3.41
3263 4278 3.363970 CCACTTCGACCGTTGAATTTGAG 60.364 47.826 1.50 0.00 0.00 3.02
3264 4279 2.546368 CCACTTCGACCGTTGAATTTGA 59.454 45.455 1.50 0.00 0.00 2.69
3265 4280 2.546368 TCCACTTCGACCGTTGAATTTG 59.454 45.455 1.50 3.18 0.00 2.32
3266 4281 2.806244 CTCCACTTCGACCGTTGAATTT 59.194 45.455 1.50 0.00 0.00 1.82
3267 4282 2.413837 CTCCACTTCGACCGTTGAATT 58.586 47.619 1.50 0.00 0.00 2.17
3268 4283 1.337823 CCTCCACTTCGACCGTTGAAT 60.338 52.381 1.50 0.00 0.00 2.57
3269 4284 0.032952 CCTCCACTTCGACCGTTGAA 59.967 55.000 1.17 1.17 0.00 2.69
3270 4285 1.111116 ACCTCCACTTCGACCGTTGA 61.111 55.000 0.00 0.00 0.00 3.18
3271 4286 0.666577 GACCTCCACTTCGACCGTTG 60.667 60.000 0.00 0.00 0.00 4.10
3272 4287 1.664306 GACCTCCACTTCGACCGTT 59.336 57.895 0.00 0.00 0.00 4.44
3273 4288 2.623915 CGACCTCCACTTCGACCGT 61.624 63.158 0.00 0.00 37.43 4.83
3274 4289 2.178521 CGACCTCCACTTCGACCG 59.821 66.667 0.00 0.00 37.43 4.79
3275 4290 1.507174 CTCGACCTCCACTTCGACC 59.493 63.158 0.00 0.00 39.29 4.79
3276 4291 1.153997 GCTCGACCTCCACTTCGAC 60.154 63.158 0.00 0.00 39.29 4.20
3277 4292 2.341101 GGCTCGACCTCCACTTCGA 61.341 63.158 0.00 0.00 41.83 3.71
3278 4293 2.154798 TTGGCTCGACCTCCACTTCG 62.155 60.000 5.77 0.00 40.22 3.79
3279 4294 0.250513 ATTGGCTCGACCTCCACTTC 59.749 55.000 5.77 0.00 40.22 3.01
3280 4295 0.250513 GATTGGCTCGACCTCCACTT 59.749 55.000 5.77 0.00 40.22 3.16
3281 4296 1.617947 GGATTGGCTCGACCTCCACT 61.618 60.000 5.77 0.00 40.22 4.00
3282 4297 1.153349 GGATTGGCTCGACCTCCAC 60.153 63.158 5.77 0.00 40.22 4.02
3283 4298 0.909610 AAGGATTGGCTCGACCTCCA 60.910 55.000 11.96 4.36 35.58 3.86
3284 4299 0.179070 GAAGGATTGGCTCGACCTCC 60.179 60.000 5.77 5.33 40.22 4.30
3285 4300 0.179070 GGAAGGATTGGCTCGACCTC 60.179 60.000 5.77 0.00 40.22 3.85
3286 4301 0.618968 AGGAAGGATTGGCTCGACCT 60.619 55.000 5.77 0.00 40.22 3.85
3287 4302 0.179070 GAGGAAGGATTGGCTCGACC 60.179 60.000 0.00 0.00 39.84 4.79
3288 4303 0.528684 CGAGGAAGGATTGGCTCGAC 60.529 60.000 0.00 0.00 36.57 4.20
3289 4304 0.970937 ACGAGGAAGGATTGGCTCGA 60.971 55.000 0.00 0.00 37.69 4.04
3290 4305 0.528684 GACGAGGAAGGATTGGCTCG 60.529 60.000 0.00 0.00 39.77 5.03
3291 4306 0.537188 TGACGAGGAAGGATTGGCTC 59.463 55.000 0.00 0.00 0.00 4.70
3292 4307 0.539051 CTGACGAGGAAGGATTGGCT 59.461 55.000 0.00 0.00 0.00 4.75
3293 4308 0.462759 CCTGACGAGGAAGGATTGGC 60.463 60.000 0.00 0.00 42.93 4.52
3294 4309 0.462759 GCCTGACGAGGAAGGATTGG 60.463 60.000 0.00 0.00 42.93 3.16
3295 4310 0.462759 GGCCTGACGAGGAAGGATTG 60.463 60.000 0.00 0.00 42.93 2.67
3296 4311 0.909610 TGGCCTGACGAGGAAGGATT 60.910 55.000 3.32 0.00 42.93 3.01
3297 4312 1.306141 TGGCCTGACGAGGAAGGAT 60.306 57.895 3.32 0.00 42.93 3.24
3298 4313 2.119611 TGGCCTGACGAGGAAGGA 59.880 61.111 3.32 0.00 42.93 3.36
3299 4314 2.266055 GTGGCCTGACGAGGAAGG 59.734 66.667 3.32 0.00 42.93 3.46
3300 4315 2.266055 GGTGGCCTGACGAGGAAG 59.734 66.667 3.32 0.00 42.93 3.46
3301 4316 3.319198 GGGTGGCCTGACGAGGAA 61.319 66.667 3.32 0.00 42.93 3.36
3302 4317 3.846405 AAGGGTGGCCTGACGAGGA 62.846 63.158 3.32 0.00 42.93 3.71
3303 4318 3.322466 AAGGGTGGCCTGACGAGG 61.322 66.667 3.32 0.00 43.19 4.63
3304 4319 2.046892 CAAGGGTGGCCTGACGAG 60.047 66.667 3.32 0.00 0.00 4.18
3305 4320 3.636231 CCAAGGGTGGCCTGACGA 61.636 66.667 3.32 0.00 38.35 4.20
3315 4330 2.227036 CCCAGCTCTCACCAAGGGT 61.227 63.158 0.00 0.00 35.62 4.34
3316 4331 2.190488 GACCCAGCTCTCACCAAGGG 62.190 65.000 0.04 0.04 42.07 3.95
3317 4332 1.298014 GACCCAGCTCTCACCAAGG 59.702 63.158 0.00 0.00 0.00 3.61
3318 4333 1.298014 GGACCCAGCTCTCACCAAG 59.702 63.158 0.00 0.00 0.00 3.61
3319 4334 2.583441 CGGACCCAGCTCTCACCAA 61.583 63.158 0.00 0.00 0.00 3.67
3320 4335 2.997315 CGGACCCAGCTCTCACCA 60.997 66.667 0.00 0.00 0.00 4.17
3321 4336 3.775654 CCGGACCCAGCTCTCACC 61.776 72.222 0.00 0.00 0.00 4.02
3322 4337 3.775654 CCCGGACCCAGCTCTCAC 61.776 72.222 0.73 0.00 0.00 3.51
3341 4356 4.771356 ACGACGACGATGGCACCG 62.771 66.667 15.32 0.00 42.66 4.94
3342 4357 2.879462 GACGACGACGATGGCACC 60.879 66.667 15.32 0.00 42.66 5.01
3343 4358 3.238241 CGACGACGACGATGGCAC 61.238 66.667 15.32 0.00 42.66 5.01
3362 4377 1.455786 GGTGATATTCGCCGTCAATCG 59.544 52.381 0.00 0.00 37.29 3.34
3372 4387 1.372997 CCGGAGCGGGTGATATTCG 60.373 63.158 0.00 0.00 44.15 3.34
3373 4388 4.675404 CCGGAGCGGGTGATATTC 57.325 61.111 0.00 0.00 44.15 1.75
3394 4409 4.154347 GAGGACCTCCGCTGGCAG 62.154 72.222 10.94 10.94 42.08 4.85
3403 4418 1.043673 AGGCGTACATGGAGGACCTC 61.044 60.000 13.60 13.60 37.04 3.85
3404 4419 1.001760 AGGCGTACATGGAGGACCT 59.998 57.895 0.00 3.90 37.04 3.85
3405 4420 1.327690 TGAGGCGTACATGGAGGACC 61.328 60.000 0.00 1.47 0.00 4.46
3406 4421 0.753262 ATGAGGCGTACATGGAGGAC 59.247 55.000 0.65 0.00 0.00 3.85
3407 4422 1.040646 GATGAGGCGTACATGGAGGA 58.959 55.000 0.65 0.00 0.00 3.71
3408 4423 0.319040 CGATGAGGCGTACATGGAGG 60.319 60.000 0.00 0.00 0.00 4.30
3409 4424 0.319040 CCGATGAGGCGTACATGGAG 60.319 60.000 0.00 0.00 0.00 3.86
3410 4425 1.739667 CCGATGAGGCGTACATGGA 59.260 57.895 0.00 0.00 0.00 3.41
3411 4426 4.343581 CCGATGAGGCGTACATGG 57.656 61.111 0.00 0.00 0.00 3.66
3471 4486 2.817834 TTAGCACGGCGATGGCAC 60.818 61.111 16.62 0.00 42.47 5.01
3472 4487 2.817834 GTTAGCACGGCGATGGCA 60.818 61.111 16.62 0.00 42.47 4.92
3473 4488 3.573491 GGTTAGCACGGCGATGGC 61.573 66.667 16.62 14.50 38.90 4.40
3474 4489 2.125310 TGGTTAGCACGGCGATGG 60.125 61.111 16.62 3.42 0.00 3.51
3475 4490 2.461110 GGTGGTTAGCACGGCGATG 61.461 63.158 16.62 9.66 0.00 3.84
3476 4491 2.125269 GGTGGTTAGCACGGCGAT 60.125 61.111 16.62 0.86 0.00 4.58
3477 4492 4.382320 GGGTGGTTAGCACGGCGA 62.382 66.667 16.62 0.00 0.00 5.54
3478 4493 4.388499 AGGGTGGTTAGCACGGCG 62.388 66.667 4.80 4.80 0.00 6.46
3479 4494 2.436115 GAGGGTGGTTAGCACGGC 60.436 66.667 8.49 0.00 0.00 5.68
3480 4495 2.125673 CGAGGGTGGTTAGCACGG 60.126 66.667 8.49 0.00 0.00 4.94
3481 4496 2.125673 CCGAGGGTGGTTAGCACG 60.126 66.667 8.49 0.00 0.00 5.34
3482 4497 2.436115 GCCGAGGGTGGTTAGCAC 60.436 66.667 5.94 5.94 0.00 4.40
3483 4498 1.774894 AAAGCCGAGGGTGGTTAGCA 61.775 55.000 0.00 0.00 0.00 3.49
3484 4499 1.002502 AAAGCCGAGGGTGGTTAGC 60.003 57.895 0.00 0.00 0.00 3.09
3485 4500 0.676782 CCAAAGCCGAGGGTGGTTAG 60.677 60.000 0.00 0.00 0.00 2.34
3486 4501 1.377229 CCAAAGCCGAGGGTGGTTA 59.623 57.895 0.00 0.00 0.00 2.85
3487 4502 2.115266 CCAAAGCCGAGGGTGGTT 59.885 61.111 0.00 0.00 0.00 3.67
3488 4503 4.660938 GCCAAAGCCGAGGGTGGT 62.661 66.667 0.00 0.00 33.43 4.16
3498 4513 4.699522 ACCTCGTCCCGCCAAAGC 62.700 66.667 0.00 0.00 0.00 3.51
3499 4514 2.742372 CACCTCGTCCCGCCAAAG 60.742 66.667 0.00 0.00 0.00 2.77
3500 4515 4.323477 CCACCTCGTCCCGCCAAA 62.323 66.667 0.00 0.00 0.00 3.28
3503 4518 4.222847 GATCCACCTCGTCCCGCC 62.223 72.222 0.00 0.00 0.00 6.13
3504 4519 3.432051 CTGATCCACCTCGTCCCGC 62.432 68.421 0.00 0.00 0.00 6.13
3505 4520 2.052690 ACTGATCCACCTCGTCCCG 61.053 63.158 0.00 0.00 0.00 5.14
3506 4521 1.517832 CACTGATCCACCTCGTCCC 59.482 63.158 0.00 0.00 0.00 4.46
3507 4522 1.153549 GCACTGATCCACCTCGTCC 60.154 63.158 0.00 0.00 0.00 4.79
3508 4523 0.459237 CAGCACTGATCCACCTCGTC 60.459 60.000 0.00 0.00 0.00 4.20
3509 4524 1.188219 ACAGCACTGATCCACCTCGT 61.188 55.000 4.31 0.00 0.00 4.18
3510 4525 0.459237 GACAGCACTGATCCACCTCG 60.459 60.000 4.31 0.00 0.00 4.63
3511 4526 0.107945 GGACAGCACTGATCCACCTC 60.108 60.000 4.31 0.00 33.74 3.85
3512 4527 1.557269 GGGACAGCACTGATCCACCT 61.557 60.000 16.13 0.00 34.58 4.00
3513 4528 1.078143 GGGACAGCACTGATCCACC 60.078 63.158 16.13 7.40 34.58 4.61
3514 4529 1.448540 CGGGACAGCACTGATCCAC 60.449 63.158 16.13 8.45 34.58 4.02
3515 4530 1.191489 TTCGGGACAGCACTGATCCA 61.191 55.000 16.13 0.93 34.58 3.41
3516 4531 0.460987 CTTCGGGACAGCACTGATCC 60.461 60.000 4.31 7.56 33.19 3.36
3517 4532 0.460987 CCTTCGGGACAGCACTGATC 60.461 60.000 4.31 0.00 37.25 2.92
3518 4533 1.599047 CCTTCGGGACAGCACTGAT 59.401 57.895 4.31 0.00 37.25 2.90
3519 4534 3.059982 CCTTCGGGACAGCACTGA 58.940 61.111 4.31 0.00 37.25 3.41
3530 4545 0.743345 CGGCTAAACTTCCCCTTCGG 60.743 60.000 0.00 0.00 0.00 4.30
3531 4546 0.743345 CCGGCTAAACTTCCCCTTCG 60.743 60.000 0.00 0.00 0.00 3.79
3532 4547 0.393944 CCCGGCTAAACTTCCCCTTC 60.394 60.000 0.00 0.00 0.00 3.46
3533 4548 1.689412 CCCGGCTAAACTTCCCCTT 59.311 57.895 0.00 0.00 0.00 3.95
3534 4549 2.980177 GCCCGGCTAAACTTCCCCT 61.980 63.158 0.71 0.00 0.00 4.79
3535 4550 2.439701 GCCCGGCTAAACTTCCCC 60.440 66.667 0.71 0.00 0.00 4.81
3536 4551 2.822701 CGCCCGGCTAAACTTCCC 60.823 66.667 8.05 0.00 0.00 3.97
3537 4552 2.822701 CCGCCCGGCTAAACTTCC 60.823 66.667 8.05 0.00 0.00 3.46
3558 4573 3.321315 TACGTTCGGTACCACGGCG 62.321 63.158 23.89 17.82 40.84 6.46
3559 4574 1.801512 GTACGTTCGGTACCACGGC 60.802 63.158 23.89 14.68 44.72 5.68
3560 4575 4.458164 GTACGTTCGGTACCACGG 57.542 61.111 23.89 8.37 44.72 4.94
3566 4581 0.457035 GCCATGGAGTACGTTCGGTA 59.543 55.000 18.40 0.00 0.00 4.02
3567 4582 1.217244 GCCATGGAGTACGTTCGGT 59.783 57.895 18.40 0.00 0.00 4.69
3568 4583 1.520787 GGCCATGGAGTACGTTCGG 60.521 63.158 18.40 0.00 0.00 4.30
3569 4584 1.876714 CGGCCATGGAGTACGTTCG 60.877 63.158 18.40 1.59 0.00 3.95
3570 4585 2.171725 GCGGCCATGGAGTACGTTC 61.172 63.158 18.40 0.00 0.00 3.95
3571 4586 2.125269 GCGGCCATGGAGTACGTT 60.125 61.111 18.40 0.00 0.00 3.99
3572 4587 4.508128 CGCGGCCATGGAGTACGT 62.508 66.667 18.40 0.00 0.00 3.57
3573 4588 4.201679 TCGCGGCCATGGAGTACG 62.202 66.667 18.40 14.61 0.00 3.67
3574 4589 2.279517 CTCGCGGCCATGGAGTAC 60.280 66.667 18.40 0.59 0.00 2.73
3575 4590 4.221422 GCTCGCGGCCATGGAGTA 62.221 66.667 18.40 0.59 34.27 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.