Multiple sequence alignment - TraesCS5D01G295300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G295300 chr5D 100.000 5109 0 0 1 5109 393454467 393459575 0.000000e+00 9435.0
1 TraesCS5D01G295300 chr5D 95.210 167 8 0 2461 2627 92111547 92111713 1.090000e-66 265.0
2 TraesCS5D01G295300 chr5B 96.506 3806 102 17 918 4707 473175198 473178988 0.000000e+00 6263.0
3 TraesCS5D01G295300 chr5B 95.297 978 29 8 1 970 473174234 473175202 0.000000e+00 1535.0
4 TraesCS5D01G295300 chr5B 100.000 33 0 0 4708 4740 473181934 473181966 1.540000e-05 62.1
5 TraesCS5D01G295300 chr5A 95.925 1595 52 9 896 2482 495319272 495320861 0.000000e+00 2573.0
6 TraesCS5D01G295300 chr5A 93.642 1038 63 3 2600 3636 495320922 495321957 0.000000e+00 1548.0
7 TraesCS5D01G295300 chr5A 90.742 1091 54 24 3698 4752 495321963 495323042 0.000000e+00 1411.0
8 TraesCS5D01G295300 chr5A 89.110 753 35 18 23 763 495318482 495319199 0.000000e+00 893.0
9 TraesCS5D01G295300 chr5A 96.296 54 2 0 4602 4655 495322948 495323001 7.050000e-14 89.8
10 TraesCS5D01G295300 chr1A 84.851 1142 125 31 908 2016 499635298 499634172 0.000000e+00 1107.0
11 TraesCS5D01G295300 chr1A 81.458 933 135 27 2629 3550 499633647 499632742 0.000000e+00 730.0
12 TraesCS5D01G295300 chr1A 77.914 489 53 29 3835 4281 499632480 499632005 2.360000e-63 254.0
13 TraesCS5D01G295300 chr1A 78.436 422 62 17 2050 2459 499634058 499633654 1.100000e-61 248.0
14 TraesCS5D01G295300 chr1A 89.474 57 6 0 840 896 467545112 467545056 7.100000e-09 73.1
15 TraesCS5D01G295300 chr1D 84.867 1130 124 29 915 2016 404062678 404061568 0.000000e+00 1096.0
16 TraesCS5D01G295300 chr1D 81.350 933 130 28 2629 3550 404061015 404060116 0.000000e+00 719.0
17 TraesCS5D01G295300 chr1D 78.867 459 42 28 3835 4247 404059851 404059402 5.070000e-65 259.0
18 TraesCS5D01G295300 chr1D 90.957 188 12 5 2452 2638 39871989 39871806 1.100000e-61 248.0
19 TraesCS5D01G295300 chr1D 83.264 239 36 4 2050 2285 404061422 404061185 3.100000e-52 217.0
20 TraesCS5D01G295300 chr1B 82.798 1151 118 47 908 2016 543477136 543476024 0.000000e+00 955.0
21 TraesCS5D01G295300 chr1B 81.711 935 128 30 2629 3550 543475514 543474610 0.000000e+00 739.0
22 TraesCS5D01G295300 chr1B 95.000 120 6 0 3837 3956 543474345 543474226 6.750000e-44 189.0
23 TraesCS5D01G295300 chr1B 81.172 239 41 4 2050 2285 543475910 543475673 6.750000e-44 189.0
24 TraesCS5D01G295300 chr1B 76.901 355 41 24 3990 4322 543474168 543473833 4.090000e-36 163.0
25 TraesCS5D01G295300 chr3B 91.706 422 27 4 1600 2016 758332956 758333374 3.430000e-161 579.0
26 TraesCS5D01G295300 chr3B 88.462 312 35 1 2626 2937 758333886 758334196 4.830000e-100 375.0
27 TraesCS5D01G295300 chr3B 80.000 460 51 14 2014 2464 758333460 758333887 8.310000e-78 302.0
28 TraesCS5D01G295300 chr6A 91.627 418 26 4 1602 2016 580184995 580185406 2.060000e-158 569.0
29 TraesCS5D01G295300 chr6A 91.388 418 26 6 1602 2016 333828397 333828807 9.600000e-157 564.0
30 TraesCS5D01G295300 chr6A 90.064 312 30 1 2626 2937 580185866 580186176 2.220000e-108 403.0
31 TraesCS5D01G295300 chr6A 89.103 312 32 2 2626 2937 333829253 333829562 2.230000e-103 387.0
32 TraesCS5D01G295300 chr6A 87.387 222 21 4 2014 2232 333828880 333829097 1.100000e-61 248.0
33 TraesCS5D01G295300 chr6A 86.996 223 21 4 2014 2232 580185492 580185710 1.420000e-60 244.0
34 TraesCS5D01G295300 chr7A 88.963 299 32 1 2630 2928 684490667 684490370 8.080000e-98 368.0
35 TraesCS5D01G295300 chr7A 90.980 255 15 4 1768 2016 684491383 684491131 2.280000e-88 337.0
36 TraesCS5D01G295300 chr7A 95.349 86 4 0 1602 1687 684509096 684509011 2.480000e-28 137.0
37 TraesCS5D01G295300 chr7A 97.561 41 1 0 835 875 105360832 105360792 2.550000e-08 71.3
38 TraesCS5D01G295300 chr4D 95.783 166 7 0 2462 2627 22589302 22589467 8.430000e-68 268.0
39 TraesCS5D01G295300 chr4D 95.758 165 7 0 2463 2627 175797981 175798145 3.030000e-67 267.0
40 TraesCS5D01G295300 chr4B 94.643 168 9 0 2462 2629 113961116 113961283 1.410000e-65 261.0
41 TraesCS5D01G295300 chr3D 92.778 180 13 0 2448 2627 400790373 400790194 1.410000e-65 261.0
42 TraesCS5D01G295300 chr3D 82.639 144 12 1 4748 4878 428244178 428244035 1.160000e-21 115.0
43 TraesCS5D01G295300 chr3D 100.000 31 0 0 872 902 504037317 504037347 1.990000e-04 58.4
44 TraesCS5D01G295300 chr4A 94.118 170 10 0 2458 2627 362068080 362067911 5.070000e-65 259.0
45 TraesCS5D01G295300 chr2D 91.444 187 14 2 2443 2627 161906830 161907016 6.560000e-64 255.0
46 TraesCS5D01G295300 chr2D 89.796 49 4 1 826 874 23335800 23335847 1.540000e-05 62.1
47 TraesCS5D01G295300 chr7B 100.000 32 0 0 872 903 261955106 261955075 5.520000e-05 60.2
48 TraesCS5D01G295300 chr7B 97.059 34 1 0 872 905 245070418 245070451 1.990000e-04 58.4
49 TraesCS5D01G295300 chr3A 100.000 32 0 0 872 903 71515893 71515862 5.520000e-05 60.2
50 TraesCS5D01G295300 chr2A 94.872 39 0 2 866 902 756898315 756898277 5.520000e-05 60.2
51 TraesCS5D01G295300 chr2A 100.000 31 0 0 872 902 756876630 756876600 1.990000e-04 58.4
52 TraesCS5D01G295300 chr2B 92.683 41 1 2 866 904 742462202 742462162 1.990000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G295300 chr5D 393454467 393459575 5108 False 9435.000000 9435 100.000000 1 5109 1 chr5D.!!$F2 5108
1 TraesCS5D01G295300 chr5B 473174234 473181966 7732 False 2620.033333 6263 97.267667 1 4740 3 chr5B.!!$F1 4739
2 TraesCS5D01G295300 chr5A 495318482 495323042 4560 False 1302.960000 2573 93.143000 23 4752 5 chr5A.!!$F1 4729
3 TraesCS5D01G295300 chr1A 499632005 499635298 3293 True 584.750000 1107 80.664750 908 4281 4 chr1A.!!$R2 3373
4 TraesCS5D01G295300 chr1D 404059402 404062678 3276 True 572.750000 1096 82.087000 915 4247 4 chr1D.!!$R2 3332
5 TraesCS5D01G295300 chr1B 543473833 543477136 3303 True 447.000000 955 83.516400 908 4322 5 chr1B.!!$R1 3414
6 TraesCS5D01G295300 chr3B 758332956 758334196 1240 False 418.666667 579 86.722667 1600 2937 3 chr3B.!!$F1 1337
7 TraesCS5D01G295300 chr6A 580184995 580186176 1181 False 405.333333 569 89.562333 1602 2937 3 chr6A.!!$F2 1335
8 TraesCS5D01G295300 chr6A 333828397 333829562 1165 False 399.666667 564 89.292667 1602 2937 3 chr6A.!!$F1 1335
9 TraesCS5D01G295300 chr7A 684490370 684491383 1013 True 352.500000 368 89.971500 1768 2928 2 chr7A.!!$R3 1160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 392 0.173708 CTCCTTCCACGTAGCAGGTC 59.826 60.000 0.00 0.00 0.00 3.85 F
469 477 0.263172 TTTCTCTTGTTGGGGGCCAA 59.737 50.000 4.39 0.00 41.69 4.52 F
791 809 0.466189 CACCAGGTGTCTTGCAACCT 60.466 55.000 11.99 1.76 34.70 3.50 F
1633 1745 1.601412 GCAAAGTCAGAAGCAGCCAAC 60.601 52.381 0.00 0.00 0.00 3.77 F
1830 1951 4.285292 GCAGACAACATGTTCTTGTTCAG 58.715 43.478 8.48 0.00 37.73 3.02 F
2807 3090 0.251634 TGCCATGACGCCAGATACAA 59.748 50.000 0.00 0.00 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1402 0.608640 CTCCACACCCTACAGACCAC 59.391 60.000 0.00 0.00 0.00 4.16 R
1469 1580 2.074576 CATGACAGAGAACACTGCAGG 58.925 52.381 19.93 9.66 41.06 4.85 R
1830 1951 2.312390 TGTTTAGGGCAACAACCTTCC 58.688 47.619 0.00 0.00 39.54 3.46 R
2451 2731 3.709653 ACGGAGGGAGTATGAAATAAGCA 59.290 43.478 0.00 0.00 0.00 3.91 R
3634 3950 0.400213 TCCCAACTACTGGCCAAGTG 59.600 55.000 10.88 0.00 44.90 3.16 R
4791 8150 0.034896 ACAACGGAGCGGAGAAACAT 59.965 50.000 0.00 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.119096 GGCCTCCGCGAAGACAAC 61.119 66.667 8.23 0.00 35.02 3.32
63 64 2.048127 GCCTCCGCGAAGACAACT 60.048 61.111 8.23 0.00 0.00 3.16
64 65 1.214589 GCCTCCGCGAAGACAACTA 59.785 57.895 8.23 0.00 0.00 2.24
65 66 1.077089 GCCTCCGCGAAGACAACTAC 61.077 60.000 8.23 0.00 0.00 2.73
66 67 0.526662 CCTCCGCGAAGACAACTACT 59.473 55.000 8.23 0.00 0.00 2.57
226 228 2.335933 CCTTATCCATACCCCCGTCTT 58.664 52.381 0.00 0.00 0.00 3.01
325 333 2.599139 ATCCGATCGAACCCTCCCCA 62.599 60.000 18.66 0.00 0.00 4.96
329 337 1.382695 ATCGAACCCTCCCCATCGT 60.383 57.895 0.00 0.00 36.70 3.73
336 344 3.770040 CTCCCCATCGTGACGGCA 61.770 66.667 4.70 0.00 0.00 5.69
384 392 0.173708 CTCCTTCCACGTAGCAGGTC 59.826 60.000 0.00 0.00 0.00 3.85
394 402 1.199327 CGTAGCAGGTCTTCTTCGTCA 59.801 52.381 0.00 0.00 0.00 4.35
395 403 2.597520 GTAGCAGGTCTTCTTCGTCAC 58.402 52.381 0.00 0.00 0.00 3.67
423 431 4.008933 GCTGGACTGGCGTGGAGT 62.009 66.667 0.00 0.00 0.00 3.85
460 468 4.081586 GGACCCTAGTCGATTTCTCTTGTT 60.082 45.833 0.00 0.00 44.54 2.83
469 477 0.263172 TTTCTCTTGTTGGGGGCCAA 59.737 50.000 4.39 0.00 41.69 4.52
705 723 2.474816 CGTAGGCAGGTAGCTTCATTC 58.525 52.381 0.00 0.00 44.79 2.67
791 809 0.466189 CACCAGGTGTCTTGCAACCT 60.466 55.000 11.99 1.76 34.70 3.50
819 845 7.122501 TCAAAATGCCTTGCAGTCTGAATAATA 59.877 33.333 3.32 0.00 43.65 0.98
981 1056 5.964758 AGACGACTATATAGACGGTCTAGG 58.035 45.833 29.09 13.70 43.69 3.02
1138 1223 3.054361 TCTCTCCACTATTTTCTTGGCCC 60.054 47.826 0.00 0.00 0.00 5.80
1469 1580 7.212976 AGGTTGATATGTGAGTGACATGTATC 58.787 38.462 5.38 2.33 45.43 2.24
1633 1745 1.601412 GCAAAGTCAGAAGCAGCCAAC 60.601 52.381 0.00 0.00 0.00 3.77
1830 1951 4.285292 GCAGACAACATGTTCTTGTTCAG 58.715 43.478 8.48 0.00 37.73 3.02
2045 2296 5.650266 TGACCAGACAACTTTGTTTACATGT 59.350 36.000 2.69 2.69 42.43 3.21
2071 2322 4.877823 TCATGGATTAAGATGTGCAGTGTC 59.122 41.667 0.00 0.00 0.00 3.67
2097 2348 9.383519 CTCTTTTAACAGCATTAGATCCAGTTA 57.616 33.333 0.00 0.00 0.00 2.24
2451 2731 8.042515 CCATTTCATACTCAATGGGTGAAAAAT 58.957 33.333 0.00 0.00 44.05 1.82
2489 2769 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2627 2907 4.098894 ACATTTAGGAACGGAGGGAGTAA 58.901 43.478 0.00 0.00 0.00 2.24
2712 2993 7.962964 TTGCTACATATATGAGTTAGGCAAC 57.037 36.000 19.63 0.00 32.31 4.17
2807 3090 0.251634 TGCCATGACGCCAGATACAA 59.748 50.000 0.00 0.00 0.00 2.41
3109 3394 5.635280 AGATTATGGACGAGCATCATTTACG 59.365 40.000 0.00 0.00 33.17 3.18
3261 3548 6.620877 AGTCAGTAATCCATGTAGTTTCCA 57.379 37.500 0.00 0.00 0.00 3.53
3537 3824 4.413520 AGGTTGCCAAGATGTATGTCCTAT 59.586 41.667 0.00 0.00 0.00 2.57
3564 3873 8.359875 TCTTTTGCCATATTTATCACCTGAAA 57.640 30.769 0.00 0.00 0.00 2.69
3619 3935 2.733227 GCCATGTACTCATGTTTGCTGC 60.733 50.000 7.30 0.00 46.99 5.25
3620 3936 2.159338 CCATGTACTCATGTTTGCTGCC 60.159 50.000 0.00 0.00 46.99 4.85
3630 3946 1.303561 TTTGCTGCCGCCTGAAGAT 60.304 52.632 0.00 0.00 34.43 2.40
3631 3947 1.588824 TTTGCTGCCGCCTGAAGATG 61.589 55.000 0.00 0.00 34.43 2.90
3632 3948 3.207669 GCTGCCGCCTGAAGATGG 61.208 66.667 0.00 0.00 0.00 3.51
3721 4037 5.105064 TGGTAGTTTAGTCATAAGGAGGCAC 60.105 44.000 0.00 0.00 0.00 5.01
3767 4085 4.077300 TGCTATCCTTGGTGTCATGATC 57.923 45.455 0.00 0.00 0.00 2.92
3799 4117 2.294233 AGCAGTAGTTGTGGTTGCAATG 59.706 45.455 0.59 0.00 37.24 2.82
3808 4126 2.627221 TGTGGTTGCAATGCTGTATGTT 59.373 40.909 6.82 0.00 0.00 2.71
3809 4127 2.988493 GTGGTTGCAATGCTGTATGTTG 59.012 45.455 6.82 0.00 0.00 3.33
3827 4145 7.720074 TGTATGTTGGTTGGTGTACTCAAAATA 59.280 33.333 0.00 0.00 0.00 1.40
3828 4146 6.627395 TGTTGGTTGGTGTACTCAAAATAG 57.373 37.500 0.00 0.00 0.00 1.73
4125 4497 2.384029 ACTAAGAAGAGACCCTGGTCCT 59.616 50.000 12.66 7.04 45.59 3.85
4167 4541 5.048852 GTGTAATAGAGATACAGGACCGGTC 60.049 48.000 27.04 27.04 34.14 4.79
4170 4544 1.143277 AGAGATACAGGACCGGTCGAT 59.857 52.381 27.68 16.46 0.00 3.59
4268 4654 0.322636 TGTCGTGTTGTTTGGGTGGT 60.323 50.000 0.00 0.00 0.00 4.16
4327 4713 6.653320 TGTTGGTCGCACTTAATCTTCTATTT 59.347 34.615 0.00 0.00 0.00 1.40
4373 4759 5.809001 TGTCTTGATTTATCTGCCACTTCT 58.191 37.500 0.00 0.00 0.00 2.85
4518 4904 6.848451 TCCCGTATAAAAGCAAGATTTTGAC 58.152 36.000 6.32 4.01 36.36 3.18
4527 4913 4.127171 AGCAAGATTTTGACACGTACTGT 58.873 39.130 0.00 0.00 36.36 3.55
4570 4983 6.837048 AGTCTCTCTAGATCCCCTAAAACTTC 59.163 42.308 0.00 0.00 33.30 3.01
4578 4991 9.243105 CTAGATCCCCTAAAACTTCAATTTGAA 57.757 33.333 11.19 11.19 34.79 2.69
4597 5010 6.552859 TTGAAGAGCAAACGTGATATTTGA 57.447 33.333 1.17 0.00 39.01 2.69
4600 5013 4.256920 AGAGCAAACGTGATATTTGAGCT 58.743 39.130 1.17 0.00 39.01 4.09
4623 5037 0.464554 GAGCCAACTAGCACATCCCC 60.465 60.000 0.00 0.00 34.23 4.81
4627 5041 2.356741 GCCAACTAGCACATCCCCTAAA 60.357 50.000 0.00 0.00 0.00 1.85
4630 5044 1.844497 ACTAGCACATCCCCTAAACCC 59.156 52.381 0.00 0.00 0.00 4.11
4634 5048 2.158234 AGCACATCCCCTAAACCCAAAA 60.158 45.455 0.00 0.00 0.00 2.44
4635 5049 2.028476 GCACATCCCCTAAACCCAAAAC 60.028 50.000 0.00 0.00 0.00 2.43
4637 5051 3.901222 CACATCCCCTAAACCCAAAACTT 59.099 43.478 0.00 0.00 0.00 2.66
4638 5052 3.901222 ACATCCCCTAAACCCAAAACTTG 59.099 43.478 0.00 0.00 0.00 3.16
4646 5060 2.082140 ACCCAAAACTTGACCCCTTC 57.918 50.000 0.00 0.00 0.00 3.46
4655 5069 1.258445 TTGACCCCTTCGCTCTCTCC 61.258 60.000 0.00 0.00 0.00 3.71
4658 5072 2.756283 CCCTTCGCTCTCTCCGGT 60.756 66.667 0.00 0.00 0.00 5.28
4681 5095 2.015736 AAGAGCCAACTAGCACATCG 57.984 50.000 0.00 0.00 34.23 3.84
4700 5116 2.950975 TCGTAAACCCAAAACTTGACCC 59.049 45.455 0.00 0.00 0.00 4.46
4702 8059 2.255770 AAACCCAAAACTTGACCCCA 57.744 45.000 0.00 0.00 0.00 4.96
4743 8102 3.819564 ATTTAGTATGTGGCTGCTCGA 57.180 42.857 0.00 0.00 0.00 4.04
4752 8111 1.929836 GTGGCTGCTCGATTGACTAAG 59.070 52.381 0.00 0.00 0.00 2.18
4753 8112 1.550524 TGGCTGCTCGATTGACTAAGT 59.449 47.619 0.00 0.00 0.00 2.24
4754 8113 1.929836 GGCTGCTCGATTGACTAAGTG 59.070 52.381 0.00 0.00 0.00 3.16
4755 8114 1.325943 GCTGCTCGATTGACTAAGTGC 59.674 52.381 0.00 0.00 0.00 4.40
4756 8115 1.929836 CTGCTCGATTGACTAAGTGCC 59.070 52.381 0.00 0.00 0.00 5.01
4757 8116 1.550524 TGCTCGATTGACTAAGTGCCT 59.449 47.619 0.00 0.00 0.00 4.75
4758 8117 1.929836 GCTCGATTGACTAAGTGCCTG 59.070 52.381 0.00 0.00 0.00 4.85
4759 8118 2.675317 GCTCGATTGACTAAGTGCCTGT 60.675 50.000 0.00 0.00 0.00 4.00
4760 8119 3.589988 CTCGATTGACTAAGTGCCTGTT 58.410 45.455 0.00 0.00 0.00 3.16
4761 8120 3.585862 TCGATTGACTAAGTGCCTGTTC 58.414 45.455 0.00 0.00 0.00 3.18
4762 8121 2.345641 CGATTGACTAAGTGCCTGTTCG 59.654 50.000 0.00 0.00 0.00 3.95
4763 8122 2.163818 TTGACTAAGTGCCTGTTCGG 57.836 50.000 0.00 0.00 0.00 4.30
4773 8132 3.241493 CCTGTTCGGCAATACACCA 57.759 52.632 0.00 0.00 0.00 4.17
4774 8133 0.802494 CCTGTTCGGCAATACACCAC 59.198 55.000 0.00 0.00 0.00 4.16
4775 8134 1.610624 CCTGTTCGGCAATACACCACT 60.611 52.381 0.00 0.00 0.00 4.00
4776 8135 1.732259 CTGTTCGGCAATACACCACTC 59.268 52.381 0.00 0.00 0.00 3.51
4777 8136 1.346395 TGTTCGGCAATACACCACTCT 59.654 47.619 0.00 0.00 0.00 3.24
4778 8137 1.732259 GTTCGGCAATACACCACTCTG 59.268 52.381 0.00 0.00 0.00 3.35
4779 8138 1.262417 TCGGCAATACACCACTCTGA 58.738 50.000 0.00 0.00 0.00 3.27
4780 8139 1.204704 TCGGCAATACACCACTCTGAG 59.795 52.381 2.45 2.45 0.00 3.35
4781 8140 1.204704 CGGCAATACACCACTCTGAGA 59.795 52.381 12.44 0.00 0.00 3.27
4782 8141 2.353704 CGGCAATACACCACTCTGAGAA 60.354 50.000 12.44 0.00 0.00 2.87
4783 8142 3.674997 GGCAATACACCACTCTGAGAAA 58.325 45.455 12.44 0.00 0.00 2.52
4784 8143 4.265073 GGCAATACACCACTCTGAGAAAT 58.735 43.478 12.44 0.00 0.00 2.17
4785 8144 5.428253 GGCAATACACCACTCTGAGAAATA 58.572 41.667 12.44 0.00 0.00 1.40
4786 8145 5.294552 GGCAATACACCACTCTGAGAAATAC 59.705 44.000 12.44 0.00 0.00 1.89
4787 8146 5.005779 GCAATACACCACTCTGAGAAATACG 59.994 44.000 12.44 0.00 0.00 3.06
4788 8147 6.330278 CAATACACCACTCTGAGAAATACGA 58.670 40.000 12.44 0.00 0.00 3.43
4789 8148 4.442375 ACACCACTCTGAGAAATACGAG 57.558 45.455 12.44 0.00 0.00 4.18
4790 8149 4.079970 ACACCACTCTGAGAAATACGAGA 58.920 43.478 12.44 0.00 0.00 4.04
4791 8150 4.523173 ACACCACTCTGAGAAATACGAGAA 59.477 41.667 12.44 0.00 0.00 2.87
4792 8151 5.186021 ACACCACTCTGAGAAATACGAGAAT 59.814 40.000 12.44 0.00 0.00 2.40
4793 8152 5.518128 CACCACTCTGAGAAATACGAGAATG 59.482 44.000 12.44 0.00 0.00 2.67
4794 8153 5.186021 ACCACTCTGAGAAATACGAGAATGT 59.814 40.000 12.44 0.00 0.00 2.71
4795 8154 6.102663 CCACTCTGAGAAATACGAGAATGTT 58.897 40.000 12.44 0.00 0.00 2.71
4796 8155 6.591834 CCACTCTGAGAAATACGAGAATGTTT 59.408 38.462 12.44 0.00 0.00 2.83
4797 8156 7.201478 CCACTCTGAGAAATACGAGAATGTTTC 60.201 40.741 12.44 0.00 31.73 2.78
4798 8157 7.543868 CACTCTGAGAAATACGAGAATGTTTCT 59.456 37.037 12.44 0.00 41.22 2.52
4806 8165 3.442996 AGAATGTTTCTCCGCTCCG 57.557 52.632 0.00 0.00 34.07 4.63
4807 8166 0.608640 AGAATGTTTCTCCGCTCCGT 59.391 50.000 0.00 0.00 34.07 4.69
4808 8167 1.002087 AGAATGTTTCTCCGCTCCGTT 59.998 47.619 0.00 0.00 34.07 4.44
4809 8168 1.128692 GAATGTTTCTCCGCTCCGTTG 59.871 52.381 0.00 0.00 0.00 4.10
4810 8169 0.034896 ATGTTTCTCCGCTCCGTTGT 59.965 50.000 0.00 0.00 0.00 3.32
4811 8170 0.179067 TGTTTCTCCGCTCCGTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
4812 8171 0.942252 GTTTCTCCGCTCCGTTGTTT 59.058 50.000 0.00 0.00 0.00 2.83
4813 8172 1.332686 GTTTCTCCGCTCCGTTGTTTT 59.667 47.619 0.00 0.00 0.00 2.43
4814 8173 1.223187 TTCTCCGCTCCGTTGTTTTC 58.777 50.000 0.00 0.00 0.00 2.29
4815 8174 0.105224 TCTCCGCTCCGTTGTTTTCA 59.895 50.000 0.00 0.00 0.00 2.69
4816 8175 0.941542 CTCCGCTCCGTTGTTTTCAA 59.058 50.000 0.00 0.00 37.48 2.69
4827 8186 3.691049 TTGTTTTCAACTGAAGCTCCG 57.309 42.857 0.00 0.00 35.21 4.63
4828 8187 1.333619 TGTTTTCAACTGAAGCTCCGC 59.666 47.619 0.00 0.00 35.21 5.54
4829 8188 1.604278 GTTTTCAACTGAAGCTCCGCT 59.396 47.619 0.00 0.00 42.56 5.52
4830 8189 1.512926 TTTCAACTGAAGCTCCGCTC 58.487 50.000 0.00 0.00 38.25 5.03
4831 8190 0.667487 TTCAACTGAAGCTCCGCTCG 60.667 55.000 0.00 0.00 38.25 5.03
4832 8191 2.433318 AACTGAAGCTCCGCTCGC 60.433 61.111 0.00 0.00 38.25 5.03
4833 8192 2.936912 AACTGAAGCTCCGCTCGCT 61.937 57.895 0.00 0.00 38.25 4.93
4834 8193 2.581953 CTGAAGCTCCGCTCGCTC 60.582 66.667 0.00 0.00 38.25 5.03
4835 8194 4.135153 TGAAGCTCCGCTCGCTCC 62.135 66.667 0.00 0.00 38.25 4.70
4836 8195 4.135153 GAAGCTCCGCTCGCTCCA 62.135 66.667 0.00 0.00 38.25 3.86
4837 8196 4.140599 AAGCTCCGCTCGCTCCAG 62.141 66.667 0.00 0.00 38.25 3.86
4840 8199 3.898509 CTCCGCTCGCTCCAGGAG 61.899 72.222 12.81 12.81 43.43 3.69
4849 8208 2.752238 CTCCAGGAGCGGAGTCGT 60.752 66.667 2.60 0.00 46.48 4.34
4850 8209 3.057547 CTCCAGGAGCGGAGTCGTG 62.058 68.421 2.60 0.00 46.48 4.35
4851 8210 4.135153 CCAGGAGCGGAGTCGTGG 62.135 72.222 5.48 5.48 43.96 4.94
4852 8211 3.062466 CAGGAGCGGAGTCGTGGA 61.062 66.667 0.00 0.00 38.89 4.02
4853 8212 2.752238 AGGAGCGGAGTCGTGGAG 60.752 66.667 0.00 0.00 38.89 3.86
4854 8213 3.063084 GGAGCGGAGTCGTGGAGT 61.063 66.667 0.00 0.00 38.89 3.85
4855 8214 2.179517 GAGCGGAGTCGTGGAGTG 59.820 66.667 0.00 0.00 38.89 3.51
4856 8215 3.343788 GAGCGGAGTCGTGGAGTGG 62.344 68.421 0.00 0.00 38.89 4.00
4858 8217 4.778415 CGGAGTCGTGGAGTGGCG 62.778 72.222 0.00 0.00 0.00 5.69
4859 8218 3.371063 GGAGTCGTGGAGTGGCGA 61.371 66.667 0.00 0.00 34.54 5.54
4860 8219 2.179517 GAGTCGTGGAGTGGCGAG 59.820 66.667 0.00 0.00 37.82 5.03
4861 8220 2.282251 AGTCGTGGAGTGGCGAGA 60.282 61.111 0.00 0.00 37.82 4.04
4862 8221 1.863662 GAGTCGTGGAGTGGCGAGAA 61.864 60.000 0.00 0.00 37.82 2.87
4863 8222 1.215647 GTCGTGGAGTGGCGAGAAT 59.784 57.895 0.00 0.00 37.82 2.40
4864 8223 0.802607 GTCGTGGAGTGGCGAGAATC 60.803 60.000 0.00 0.00 37.82 2.52
4865 8224 1.519455 CGTGGAGTGGCGAGAATCC 60.519 63.158 0.00 0.00 0.00 3.01
4866 8225 1.519455 GTGGAGTGGCGAGAATCCG 60.519 63.158 0.00 0.00 34.39 4.18
4867 8226 1.680989 TGGAGTGGCGAGAATCCGA 60.681 57.895 0.00 0.00 34.39 4.55
4868 8227 1.254975 TGGAGTGGCGAGAATCCGAA 61.255 55.000 0.00 0.00 34.39 4.30
4869 8228 0.806492 GGAGTGGCGAGAATCCGAAC 60.806 60.000 0.00 0.00 0.00 3.95
4870 8229 0.108804 GAGTGGCGAGAATCCGAACA 60.109 55.000 0.00 0.00 0.00 3.18
4871 8230 0.320374 AGTGGCGAGAATCCGAACAA 59.680 50.000 0.00 0.00 0.00 2.83
4872 8231 0.721718 GTGGCGAGAATCCGAACAAG 59.278 55.000 0.00 0.00 0.00 3.16
4873 8232 1.019278 TGGCGAGAATCCGAACAAGC 61.019 55.000 0.00 0.00 0.00 4.01
4874 8233 1.706287 GGCGAGAATCCGAACAAGCC 61.706 60.000 0.00 0.00 36.32 4.35
4875 8234 1.706287 GCGAGAATCCGAACAAGCCC 61.706 60.000 0.00 0.00 0.00 5.19
4876 8235 0.108138 CGAGAATCCGAACAAGCCCT 60.108 55.000 0.00 0.00 0.00 5.19
4877 8236 1.136305 CGAGAATCCGAACAAGCCCTA 59.864 52.381 0.00 0.00 0.00 3.53
4878 8237 2.418197 CGAGAATCCGAACAAGCCCTAA 60.418 50.000 0.00 0.00 0.00 2.69
4879 8238 3.606687 GAGAATCCGAACAAGCCCTAAA 58.393 45.455 0.00 0.00 0.00 1.85
4880 8239 4.007659 GAGAATCCGAACAAGCCCTAAAA 58.992 43.478 0.00 0.00 0.00 1.52
4881 8240 4.600062 AGAATCCGAACAAGCCCTAAAAT 58.400 39.130 0.00 0.00 0.00 1.82
4882 8241 5.016831 AGAATCCGAACAAGCCCTAAAATT 58.983 37.500 0.00 0.00 0.00 1.82
4883 8242 4.983671 ATCCGAACAAGCCCTAAAATTC 57.016 40.909 0.00 0.00 0.00 2.17
4884 8243 3.086282 TCCGAACAAGCCCTAAAATTCC 58.914 45.455 0.00 0.00 0.00 3.01
4885 8244 2.165641 CCGAACAAGCCCTAAAATTCCC 59.834 50.000 0.00 0.00 0.00 3.97
4886 8245 2.159435 CGAACAAGCCCTAAAATTCCCG 60.159 50.000 0.00 0.00 0.00 5.14
4887 8246 2.597578 ACAAGCCCTAAAATTCCCGT 57.402 45.000 0.00 0.00 0.00 5.28
4888 8247 2.167662 ACAAGCCCTAAAATTCCCGTG 58.832 47.619 0.00 0.00 0.00 4.94
4889 8248 1.135112 CAAGCCCTAAAATTCCCGTGC 60.135 52.381 0.00 0.00 0.00 5.34
4890 8249 0.683179 AGCCCTAAAATTCCCGTGCC 60.683 55.000 0.00 0.00 0.00 5.01
4891 8250 1.672854 GCCCTAAAATTCCCGTGCCC 61.673 60.000 0.00 0.00 0.00 5.36
4892 8251 1.040893 CCCTAAAATTCCCGTGCCCC 61.041 60.000 0.00 0.00 0.00 5.80
4893 8252 1.040893 CCTAAAATTCCCGTGCCCCC 61.041 60.000 0.00 0.00 0.00 5.40
4894 8253 0.033503 CTAAAATTCCCGTGCCCCCT 60.034 55.000 0.00 0.00 0.00 4.79
4895 8254 0.033894 TAAAATTCCCGTGCCCCCTC 60.034 55.000 0.00 0.00 0.00 4.30
4896 8255 2.087857 AAAATTCCCGTGCCCCCTCA 62.088 55.000 0.00 0.00 0.00 3.86
4897 8256 1.874299 AAATTCCCGTGCCCCCTCAT 61.874 55.000 0.00 0.00 0.00 2.90
4898 8257 2.572333 AATTCCCGTGCCCCCTCATG 62.572 60.000 0.00 0.00 0.00 3.07
4908 8267 4.133373 CCCTCATGCCCACCCCTG 62.133 72.222 0.00 0.00 0.00 4.45
4909 8268 4.828296 CCTCATGCCCACCCCTGC 62.828 72.222 0.00 0.00 0.00 4.85
4921 8280 4.393155 CCCTGCGCTGCTACCACA 62.393 66.667 9.73 0.00 0.00 4.17
4922 8281 2.124983 CCTGCGCTGCTACCACAT 60.125 61.111 9.73 0.00 0.00 3.21
4923 8282 1.746615 CCTGCGCTGCTACCACATT 60.747 57.895 9.73 0.00 0.00 2.71
4924 8283 0.461870 CCTGCGCTGCTACCACATTA 60.462 55.000 9.73 0.00 0.00 1.90
4925 8284 0.933097 CTGCGCTGCTACCACATTAG 59.067 55.000 9.73 0.00 0.00 1.73
4926 8285 0.249120 TGCGCTGCTACCACATTAGT 59.751 50.000 9.73 0.00 0.00 2.24
4927 8286 0.931005 GCGCTGCTACCACATTAGTC 59.069 55.000 0.00 0.00 0.00 2.59
4928 8287 1.200483 CGCTGCTACCACATTAGTCG 58.800 55.000 0.00 0.00 0.00 4.18
4929 8288 1.469251 CGCTGCTACCACATTAGTCGT 60.469 52.381 0.00 0.00 0.00 4.34
4930 8289 1.927174 GCTGCTACCACATTAGTCGTG 59.073 52.381 0.00 0.00 0.00 4.35
4936 8295 2.369870 CACATTAGTCGTGGTCGGC 58.630 57.895 0.00 0.00 42.44 5.54
4942 8301 4.736896 GTCGTGGTCGGCTGTCCC 62.737 72.222 6.35 1.83 38.74 4.46
4945 8304 3.637273 GTGGTCGGCTGTCCCCTT 61.637 66.667 6.35 0.00 0.00 3.95
4946 8305 2.852075 TGGTCGGCTGTCCCCTTT 60.852 61.111 6.35 0.00 0.00 3.11
4947 8306 2.046217 GGTCGGCTGTCCCCTTTC 60.046 66.667 0.00 0.00 0.00 2.62
4948 8307 2.747686 GTCGGCTGTCCCCTTTCA 59.252 61.111 0.00 0.00 0.00 2.69
4949 8308 1.671379 GTCGGCTGTCCCCTTTCAC 60.671 63.158 0.00 0.00 0.00 3.18
4950 8309 2.742372 CGGCTGTCCCCTTTCACG 60.742 66.667 0.00 0.00 0.00 4.35
4951 8310 2.747686 GGCTGTCCCCTTTCACGA 59.252 61.111 0.00 0.00 0.00 4.35
4952 8311 1.299976 GGCTGTCCCCTTTCACGAT 59.700 57.895 0.00 0.00 0.00 3.73
4953 8312 1.026718 GGCTGTCCCCTTTCACGATG 61.027 60.000 0.00 0.00 0.00 3.84
4954 8313 0.036388 GCTGTCCCCTTTCACGATGA 60.036 55.000 0.00 0.00 0.00 2.92
4955 8314 1.407437 GCTGTCCCCTTTCACGATGAT 60.407 52.381 0.00 0.00 0.00 2.45
4956 8315 2.941415 GCTGTCCCCTTTCACGATGATT 60.941 50.000 0.00 0.00 0.00 2.57
4957 8316 2.679837 CTGTCCCCTTTCACGATGATTG 59.320 50.000 0.00 0.00 0.00 2.67
4958 8317 2.017049 GTCCCCTTTCACGATGATTGG 58.983 52.381 0.00 0.00 0.00 3.16
4959 8318 0.740737 CCCCTTTCACGATGATTGGC 59.259 55.000 0.00 0.00 0.00 4.52
4960 8319 1.462616 CCCTTTCACGATGATTGGCA 58.537 50.000 0.00 0.00 0.00 4.92
4961 8320 1.818060 CCCTTTCACGATGATTGGCAA 59.182 47.619 0.68 0.68 0.00 4.52
4962 8321 2.230992 CCCTTTCACGATGATTGGCAAA 59.769 45.455 3.01 0.00 0.00 3.68
4963 8322 3.305950 CCCTTTCACGATGATTGGCAAAA 60.306 43.478 3.01 0.00 0.00 2.44
4964 8323 3.674753 CCTTTCACGATGATTGGCAAAAC 59.325 43.478 3.01 2.21 0.00 2.43
4965 8324 2.610219 TCACGATGATTGGCAAAACG 57.390 45.000 3.01 10.22 0.00 3.60
4966 8325 1.198867 TCACGATGATTGGCAAAACGG 59.801 47.619 3.01 0.00 0.00 4.44
4967 8326 0.525761 ACGATGATTGGCAAAACGGG 59.474 50.000 3.01 0.00 0.00 5.28
4968 8327 0.525761 CGATGATTGGCAAAACGGGT 59.474 50.000 3.01 0.00 0.00 5.28
4969 8328 1.740585 CGATGATTGGCAAAACGGGTA 59.259 47.619 3.01 0.00 0.00 3.69
4970 8329 2.223249 CGATGATTGGCAAAACGGGTAG 60.223 50.000 3.01 0.00 0.00 3.18
4971 8330 1.540267 TGATTGGCAAAACGGGTAGG 58.460 50.000 3.01 0.00 0.00 3.18
4972 8331 1.202952 TGATTGGCAAAACGGGTAGGT 60.203 47.619 3.01 0.00 0.00 3.08
4973 8332 1.890489 GATTGGCAAAACGGGTAGGTT 59.110 47.619 3.01 0.00 0.00 3.50
4974 8333 1.033574 TTGGCAAAACGGGTAGGTTG 58.966 50.000 0.00 0.00 0.00 3.77
4975 8334 0.106619 TGGCAAAACGGGTAGGTTGT 60.107 50.000 0.00 0.00 0.00 3.32
4976 8335 0.594602 GGCAAAACGGGTAGGTTGTC 59.405 55.000 0.00 0.00 0.00 3.18
4977 8336 0.594602 GCAAAACGGGTAGGTTGTCC 59.405 55.000 0.00 0.00 0.00 4.02
4978 8337 1.241165 CAAAACGGGTAGGTTGTCCC 58.759 55.000 0.00 0.00 40.26 4.46
4980 8339 1.142936 AAACGGGTAGGTTGTCCCTT 58.857 50.000 0.00 0.00 42.73 3.95
4981 8340 0.399075 AACGGGTAGGTTGTCCCTTG 59.601 55.000 0.00 0.00 42.73 3.61
4982 8341 0.765519 ACGGGTAGGTTGTCCCTTGT 60.766 55.000 0.00 0.00 42.73 3.16
4983 8342 0.036671 CGGGTAGGTTGTCCCTTGTC 60.037 60.000 0.00 0.00 42.73 3.18
4984 8343 0.036671 GGGTAGGTTGTCCCTTGTCG 60.037 60.000 0.00 0.00 42.73 4.35
4985 8344 0.036671 GGTAGGTTGTCCCTTGTCGG 60.037 60.000 0.00 0.00 42.73 4.79
4986 8345 0.971386 GTAGGTTGTCCCTTGTCGGA 59.029 55.000 0.00 0.00 42.73 4.55
4991 8350 3.479979 GTCCCTTGTCGGACCCTT 58.520 61.111 5.55 0.00 45.72 3.95
4992 8351 1.003718 GTCCCTTGTCGGACCCTTG 60.004 63.158 5.55 0.00 45.72 3.61
4993 8352 2.221299 TCCCTTGTCGGACCCTTGG 61.221 63.158 5.55 1.52 33.16 3.61
4994 8353 2.221299 CCCTTGTCGGACCCTTGGA 61.221 63.158 5.55 0.00 33.16 3.53
4995 8354 1.758592 CCTTGTCGGACCCTTGGAA 59.241 57.895 5.55 0.00 33.16 3.53
4996 8355 0.321653 CCTTGTCGGACCCTTGGAAG 60.322 60.000 5.55 1.44 33.16 3.46
4997 8356 0.955919 CTTGTCGGACCCTTGGAAGC 60.956 60.000 5.55 0.00 0.00 3.86
4998 8357 2.046217 GTCGGACCCTTGGAAGCC 60.046 66.667 0.00 0.00 0.00 4.35
4999 8358 2.203938 TCGGACCCTTGGAAGCCT 60.204 61.111 0.00 0.00 0.00 4.58
5000 8359 2.045926 CGGACCCTTGGAAGCCTG 60.046 66.667 0.00 0.00 0.00 4.85
5001 8360 2.361737 GGACCCTTGGAAGCCTGC 60.362 66.667 0.00 0.00 0.00 4.85
5002 8361 2.747855 GACCCTTGGAAGCCTGCG 60.748 66.667 0.00 0.00 0.00 5.18
5017 8376 2.886124 GCGCTAGCACCGAAGACC 60.886 66.667 16.45 0.00 44.35 3.85
5018 8377 2.202756 CGCTAGCACCGAAGACCC 60.203 66.667 16.45 0.00 0.00 4.46
5019 8378 2.978824 GCTAGCACCGAAGACCCA 59.021 61.111 10.63 0.00 0.00 4.51
5020 8379 1.522569 GCTAGCACCGAAGACCCAT 59.477 57.895 10.63 0.00 0.00 4.00
5021 8380 0.107654 GCTAGCACCGAAGACCCATT 60.108 55.000 10.63 0.00 0.00 3.16
5022 8381 1.656652 CTAGCACCGAAGACCCATTG 58.343 55.000 0.00 0.00 0.00 2.82
5023 8382 0.251916 TAGCACCGAAGACCCATTGG 59.748 55.000 0.00 0.00 37.80 3.16
5032 8391 3.575247 ACCCATTGGTGGCCACGA 61.575 61.111 29.08 23.75 45.58 4.35
5033 8392 2.044053 CCCATTGGTGGCCACGAT 60.044 61.111 29.08 21.66 44.62 3.73
5034 8393 1.682005 CCCATTGGTGGCCACGATT 60.682 57.895 29.08 18.90 44.62 3.34
5035 8394 1.257055 CCCATTGGTGGCCACGATTT 61.257 55.000 29.08 13.43 44.62 2.17
5036 8395 0.108709 CCATTGGTGGCCACGATTTG 60.109 55.000 29.08 22.96 39.01 2.32
5037 8396 0.887247 CATTGGTGGCCACGATTTGA 59.113 50.000 29.08 11.20 30.78 2.69
5038 8397 1.477700 CATTGGTGGCCACGATTTGAT 59.522 47.619 29.08 13.11 30.78 2.57
5039 8398 0.887247 TTGGTGGCCACGATTTGATG 59.113 50.000 29.08 0.00 30.78 3.07
5040 8399 0.964860 TGGTGGCCACGATTTGATGG 60.965 55.000 29.08 0.00 39.16 3.51
5041 8400 0.965363 GGTGGCCACGATTTGATGGT 60.965 55.000 29.08 0.00 38.34 3.55
5042 8401 0.171007 GTGGCCACGATTTGATGGTG 59.829 55.000 22.49 0.00 38.34 4.17
5043 8402 1.139520 GGCCACGATTTGATGGTGC 59.860 57.895 0.00 0.00 37.62 5.01
5044 8403 1.594194 GGCCACGATTTGATGGTGCA 61.594 55.000 0.00 0.00 37.62 4.57
5045 8404 0.243365 GCCACGATTTGATGGTGCAA 59.757 50.000 0.00 0.00 37.62 4.08
5046 8405 1.981254 CCACGATTTGATGGTGCAAC 58.019 50.000 0.00 0.00 37.62 4.17
5058 8417 1.227527 GTGCAACCACCAAAAGGGC 60.228 57.895 0.00 0.00 42.05 5.19
5059 8418 2.028925 GCAACCACCAAAAGGGCG 59.971 61.111 0.00 0.00 42.05 6.13
5060 8419 2.494530 GCAACCACCAAAAGGGCGA 61.495 57.895 0.00 0.00 42.05 5.54
5061 8420 1.362355 CAACCACCAAAAGGGCGAC 59.638 57.895 0.00 0.00 42.05 5.19
5062 8421 1.076632 AACCACCAAAAGGGCGACA 60.077 52.632 0.00 0.00 42.05 4.35
5063 8422 1.388837 AACCACCAAAAGGGCGACAC 61.389 55.000 0.00 0.00 42.05 3.67
5064 8423 1.826054 CCACCAAAAGGGCGACACA 60.826 57.895 0.00 0.00 42.05 3.72
5065 8424 1.178534 CCACCAAAAGGGCGACACAT 61.179 55.000 0.00 0.00 42.05 3.21
5066 8425 0.039256 CACCAAAAGGGCGACACATG 60.039 55.000 0.00 0.00 42.05 3.21
5067 8426 1.080569 CCAAAAGGGCGACACATGC 60.081 57.895 0.00 0.00 0.00 4.06
5068 8427 1.659233 CAAAAGGGCGACACATGCA 59.341 52.632 0.00 0.00 0.00 3.96
5069 8428 0.031857 CAAAAGGGCGACACATGCAA 59.968 50.000 0.00 0.00 0.00 4.08
5070 8429 0.031994 AAAAGGGCGACACATGCAAC 59.968 50.000 0.00 0.00 0.00 4.17
5071 8430 1.805428 AAAGGGCGACACATGCAACC 61.805 55.000 0.00 0.00 0.00 3.77
5072 8431 2.672996 GGGCGACACATGCAACCT 60.673 61.111 0.00 0.00 0.00 3.50
5073 8432 2.690778 GGGCGACACATGCAACCTC 61.691 63.158 0.00 0.00 0.00 3.85
5074 8433 1.672356 GGCGACACATGCAACCTCT 60.672 57.895 0.00 0.00 0.00 3.69
5075 8434 1.499056 GCGACACATGCAACCTCTG 59.501 57.895 0.00 0.00 0.00 3.35
5100 8459 2.923035 CGAGGCCGGGTATGGGAT 60.923 66.667 2.18 0.00 0.00 3.85
5101 8460 2.750350 GAGGCCGGGTATGGGATG 59.250 66.667 2.18 0.00 0.00 3.51
5102 8461 2.854032 AGGCCGGGTATGGGATGG 60.854 66.667 2.18 0.00 0.00 3.51
5103 8462 2.852075 GGCCGGGTATGGGATGGA 60.852 66.667 2.18 0.00 0.00 3.41
5104 8463 2.231380 GGCCGGGTATGGGATGGAT 61.231 63.158 2.18 0.00 0.00 3.41
5105 8464 1.767692 GCCGGGTATGGGATGGATT 59.232 57.895 2.18 0.00 0.00 3.01
5106 8465 0.322546 GCCGGGTATGGGATGGATTC 60.323 60.000 2.18 0.00 0.00 2.52
5107 8466 1.064003 CCGGGTATGGGATGGATTCA 58.936 55.000 0.00 0.00 0.00 2.57
5108 8467 1.003580 CCGGGTATGGGATGGATTCAG 59.996 57.143 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.747855 GAGGCAAGCCCGTTCCAG 60.748 66.667 7.62 0.00 39.21 3.86
62 63 0.029567 CGGGCACGAAGCTAGAGTAG 59.970 60.000 0.00 0.00 44.60 2.57
63 64 0.679002 ACGGGCACGAAGCTAGAGTA 60.679 55.000 19.19 0.00 44.60 2.59
64 65 1.935327 GACGGGCACGAAGCTAGAGT 61.935 60.000 19.19 0.00 44.60 3.24
65 66 1.226717 GACGGGCACGAAGCTAGAG 60.227 63.158 19.19 0.00 44.60 2.43
66 67 2.707849 GGACGGGCACGAAGCTAGA 61.708 63.158 19.19 0.00 44.60 2.43
179 180 2.070650 GGGGGTGCTTACCGATCCT 61.071 63.158 0.00 0.00 0.00 3.24
278 280 2.756760 TCTCGCCTAAATCAAGTACGGT 59.243 45.455 0.00 0.00 0.00 4.83
384 392 1.446272 GCGGAGGGTGACGAAGAAG 60.446 63.158 0.00 0.00 0.00 2.85
460 468 1.458017 TTTAGGTTAGTTGGCCCCCA 58.542 50.000 0.00 0.00 0.00 4.96
705 723 2.162208 AGGTGCATGTTACAGATTTGCG 59.838 45.455 4.54 0.00 36.11 4.85
791 809 2.798976 GACTGCAAGGCATTTTGACA 57.201 45.000 0.00 0.00 46.27 3.58
819 845 1.339727 GGGAGTAACAAGATTGCGGGT 60.340 52.381 0.00 0.00 0.00 5.28
981 1056 5.195001 TCATTGTTAAGTTGCTTCAACCC 57.805 39.130 6.12 0.00 44.49 4.11
1138 1223 2.783135 TGAAGTTGGGCAGCTAGAAAG 58.217 47.619 0.00 0.00 0.00 2.62
1179 1265 0.102481 CCCAACGATCGTCCTACAGG 59.898 60.000 22.98 15.33 0.00 4.00
1296 1402 0.608640 CTCCACACCCTACAGACCAC 59.391 60.000 0.00 0.00 0.00 4.16
1469 1580 2.074576 CATGACAGAGAACACTGCAGG 58.925 52.381 19.93 9.66 41.06 4.85
1830 1951 2.312390 TGTTTAGGGCAACAACCTTCC 58.688 47.619 0.00 0.00 39.54 3.46
2045 2296 6.051074 CACTGCACATCTTAATCCATGACTA 58.949 40.000 0.00 0.00 0.00 2.59
2071 2322 7.856145 ACTGGATCTAATGCTGTTAAAAGAG 57.144 36.000 0.00 0.00 28.96 2.85
2451 2731 3.709653 ACGGAGGGAGTATGAAATAAGCA 59.290 43.478 0.00 0.00 0.00 3.91
2489 2769 8.602424 TGGTAGTCCATTTGAATTCTCTAGAAA 58.398 33.333 7.05 0.00 39.03 2.52
2565 2845 5.456548 TCAACAAGTGACTACATACGGAA 57.543 39.130 0.00 0.00 0.00 4.30
2627 2907 5.221843 TGTTCTGGTAGTGGCAAATCTAACT 60.222 40.000 0.00 0.00 0.00 2.24
2712 2993 6.551385 AACACAAGCTTATCAGAGTCAAAG 57.449 37.500 0.00 0.00 0.00 2.77
2807 3090 4.875536 GGTGTGGCAAGTTTTCTCAAAAAT 59.124 37.500 0.00 0.00 36.77 1.82
3201 3488 4.587684 GGGGAGAAGTAGATACGGATCAAA 59.412 45.833 10.99 0.00 34.17 2.69
3537 3824 9.639563 TTCAGGTGATAAATATGGCAAAAGATA 57.360 29.630 0.00 0.00 0.00 1.98
3633 3949 0.609131 CCCAACTACTGGCCAAGTGG 60.609 60.000 10.88 12.85 44.90 4.00
3634 3950 0.400213 TCCCAACTACTGGCCAAGTG 59.600 55.000 10.88 0.00 44.90 3.16
3635 3951 0.693049 CTCCCAACTACTGGCCAAGT 59.307 55.000 7.01 5.37 44.90 3.16
3636 3952 0.693049 ACTCCCAACTACTGGCCAAG 59.307 55.000 7.01 4.55 44.90 3.61
3637 3953 1.626825 GTACTCCCAACTACTGGCCAA 59.373 52.381 7.01 0.00 44.90 4.52
3692 4008 8.047310 CCTCCTTATGACTAAACTACCATGTTT 58.953 37.037 0.00 0.00 42.10 2.83
3721 4037 9.398170 CAACATTAAAACAGGTATGAACAAGAG 57.602 33.333 0.00 0.00 0.00 2.85
3734 4050 6.808212 CACCAAGGATAGCAACATTAAAACAG 59.192 38.462 0.00 0.00 0.00 3.16
3767 4085 7.871853 ACCACAACTACTGCTTGTAAAAATAG 58.128 34.615 0.00 0.00 30.48 1.73
3799 4117 3.408634 AGTACACCAACCAACATACAGC 58.591 45.455 0.00 0.00 0.00 4.40
3808 4126 6.711645 GGTTACTATTTTGAGTACACCAACCA 59.288 38.462 0.00 0.00 34.92 3.67
3809 4127 6.938596 AGGTTACTATTTTGAGTACACCAACC 59.061 38.462 0.00 0.00 36.53 3.77
3827 4145 4.353777 TCTGCATGTAGAGGAAGGTTACT 58.646 43.478 9.69 0.00 0.00 2.24
3828 4146 4.737855 TCTGCATGTAGAGGAAGGTTAC 57.262 45.455 9.69 0.00 0.00 2.50
4081 4445 1.303309 CATCCATCTCTTCCAACGCC 58.697 55.000 0.00 0.00 0.00 5.68
4125 4497 3.336468 ACACCACACGTGAAAGTAAACA 58.664 40.909 25.01 0.00 46.20 2.83
4167 4541 7.872163 TTTGGAACTGAAATGAAATTCATCG 57.128 32.000 9.11 1.68 35.76 3.84
4268 4654 8.637281 TTAATACGATTCAATTCGCTAGAACA 57.363 30.769 0.00 0.00 42.82 3.18
4327 4713 7.405292 ACAGATTTTCAGGTCATTCAGGATTA 58.595 34.615 0.00 0.00 0.00 1.75
4373 4759 3.826157 CTCAAGGTTGGAGTAATGGCAAA 59.174 43.478 0.00 0.00 0.00 3.68
4472 4858 6.285990 GGAAATGAGCTGCCATGAATAATTT 58.714 36.000 0.00 0.00 0.00 1.82
4518 4904 1.003008 TGCAATGCAACACAGTACGTG 60.003 47.619 5.01 13.79 42.17 4.49
4570 4983 7.801547 AATATCACGTTTGCTCTTCAAATTG 57.198 32.000 0.00 0.00 45.43 2.32
4578 4991 4.256920 AGCTCAAATATCACGTTTGCTCT 58.743 39.130 0.00 0.00 36.69 4.09
4600 5013 3.370527 GGGATGTGCTAGTTGGCTCTTTA 60.371 47.826 0.00 0.00 0.00 1.85
4623 5037 3.572642 AGGGGTCAAGTTTTGGGTTTAG 58.427 45.455 0.00 0.00 0.00 1.85
4627 5041 1.752788 CGAAGGGGTCAAGTTTTGGGT 60.753 52.381 0.00 0.00 0.00 4.51
4630 5044 1.266989 GAGCGAAGGGGTCAAGTTTTG 59.733 52.381 0.00 0.00 42.75 2.44
4634 5048 0.543174 AGAGAGCGAAGGGGTCAAGT 60.543 55.000 0.00 0.00 45.66 3.16
4635 5049 0.174617 GAGAGAGCGAAGGGGTCAAG 59.825 60.000 0.00 0.00 45.66 3.02
4637 5051 1.682684 GGAGAGAGCGAAGGGGTCA 60.683 63.158 0.00 0.00 45.66 4.02
4638 5052 2.776913 CGGAGAGAGCGAAGGGGTC 61.777 68.421 0.00 0.00 43.56 4.46
4646 5060 0.243907 TCTTTTGACCGGAGAGAGCG 59.756 55.000 9.46 0.00 0.00 5.03
4655 5069 1.464997 GCTAGTTGGCTCTTTTGACCG 59.535 52.381 0.00 0.00 0.00 4.79
4658 5072 3.207265 TGTGCTAGTTGGCTCTTTTGA 57.793 42.857 0.00 0.00 0.00 2.69
4681 5095 3.032459 TGGGGTCAAGTTTTGGGTTTAC 58.968 45.455 0.00 0.00 0.00 2.01
4700 5116 8.767478 AATTTAAATTTGTGAGAGAGCAATGG 57.233 30.769 7.64 0.00 0.00 3.16
4743 8102 2.699954 CCGAACAGGCACTTAGTCAAT 58.300 47.619 0.00 0.00 34.60 2.57
4755 8114 0.802494 GTGGTGTATTGCCGAACAGG 59.198 55.000 0.00 0.00 44.97 4.00
4756 8115 1.732259 GAGTGGTGTATTGCCGAACAG 59.268 52.381 0.00 0.00 0.00 3.16
4757 8116 1.346395 AGAGTGGTGTATTGCCGAACA 59.654 47.619 0.00 0.00 0.00 3.18
4758 8117 1.732259 CAGAGTGGTGTATTGCCGAAC 59.268 52.381 0.00 0.00 0.00 3.95
4759 8118 1.621317 TCAGAGTGGTGTATTGCCGAA 59.379 47.619 0.00 0.00 0.00 4.30
4760 8119 1.204704 CTCAGAGTGGTGTATTGCCGA 59.795 52.381 0.00 0.00 0.00 5.54
4761 8120 1.204704 TCTCAGAGTGGTGTATTGCCG 59.795 52.381 0.00 0.00 0.00 5.69
4762 8121 3.334583 TTCTCAGAGTGGTGTATTGCC 57.665 47.619 0.00 0.00 0.00 4.52
4763 8122 5.005779 CGTATTTCTCAGAGTGGTGTATTGC 59.994 44.000 0.00 0.00 0.00 3.56
4764 8123 6.330278 TCGTATTTCTCAGAGTGGTGTATTG 58.670 40.000 0.00 0.00 0.00 1.90
4765 8124 6.377429 TCTCGTATTTCTCAGAGTGGTGTATT 59.623 38.462 0.00 0.00 32.90 1.89
4766 8125 5.886474 TCTCGTATTTCTCAGAGTGGTGTAT 59.114 40.000 0.00 0.00 32.90 2.29
4767 8126 5.250982 TCTCGTATTTCTCAGAGTGGTGTA 58.749 41.667 0.00 0.00 32.90 2.90
4768 8127 4.079970 TCTCGTATTTCTCAGAGTGGTGT 58.920 43.478 0.00 0.00 32.90 4.16
4769 8128 4.703645 TCTCGTATTTCTCAGAGTGGTG 57.296 45.455 0.00 0.00 32.90 4.17
4770 8129 5.186021 ACATTCTCGTATTTCTCAGAGTGGT 59.814 40.000 0.00 0.00 29.29 4.16
4771 8130 5.655488 ACATTCTCGTATTTCTCAGAGTGG 58.345 41.667 0.00 0.00 29.29 4.00
4772 8131 7.543868 AGAAACATTCTCGTATTTCTCAGAGTG 59.456 37.037 0.00 0.00 36.86 3.51
4773 8132 7.607250 AGAAACATTCTCGTATTTCTCAGAGT 58.393 34.615 0.00 0.00 36.86 3.24
4788 8147 0.608640 ACGGAGCGGAGAAACATTCT 59.391 50.000 0.00 0.00 44.21 2.40
4789 8148 1.128692 CAACGGAGCGGAGAAACATTC 59.871 52.381 0.00 0.00 0.00 2.67
4790 8149 1.156736 CAACGGAGCGGAGAAACATT 58.843 50.000 0.00 0.00 0.00 2.71
4791 8150 0.034896 ACAACGGAGCGGAGAAACAT 59.965 50.000 0.00 0.00 0.00 2.71
4792 8151 0.179067 AACAACGGAGCGGAGAAACA 60.179 50.000 0.00 0.00 0.00 2.83
4793 8152 0.942252 AAACAACGGAGCGGAGAAAC 59.058 50.000 0.00 0.00 0.00 2.78
4794 8153 1.600485 GAAAACAACGGAGCGGAGAAA 59.400 47.619 0.00 0.00 0.00 2.52
4795 8154 1.223187 GAAAACAACGGAGCGGAGAA 58.777 50.000 0.00 0.00 0.00 2.87
4796 8155 0.105224 TGAAAACAACGGAGCGGAGA 59.895 50.000 0.00 0.00 0.00 3.71
4797 8156 0.941542 TTGAAAACAACGGAGCGGAG 59.058 50.000 0.00 0.00 0.00 4.63
4798 8157 3.082165 TTGAAAACAACGGAGCGGA 57.918 47.368 0.00 0.00 0.00 5.54
4823 8182 3.898509 CTCCTGGAGCGAGCGGAG 61.899 72.222 11.42 3.12 37.33 4.63
4833 8192 3.062466 CACGACTCCGCTCCTGGA 61.062 66.667 0.00 0.00 39.95 3.86
4834 8193 4.135153 CCACGACTCCGCTCCTGG 62.135 72.222 0.00 0.00 39.95 4.45
4835 8194 3.057547 CTCCACGACTCCGCTCCTG 62.058 68.421 0.00 0.00 39.95 3.86
4836 8195 2.752238 CTCCACGACTCCGCTCCT 60.752 66.667 0.00 0.00 39.95 3.69
4837 8196 3.063084 ACTCCACGACTCCGCTCC 61.063 66.667 0.00 0.00 39.95 4.70
4838 8197 2.179517 CACTCCACGACTCCGCTC 59.820 66.667 0.00 0.00 39.95 5.03
4839 8198 3.374402 CCACTCCACGACTCCGCT 61.374 66.667 0.00 0.00 39.95 5.52
4841 8200 4.778415 CGCCACTCCACGACTCCG 62.778 72.222 0.00 0.00 42.50 4.63
4842 8201 3.343788 CTCGCCACTCCACGACTCC 62.344 68.421 0.00 0.00 34.08 3.85
4843 8202 1.863662 TTCTCGCCACTCCACGACTC 61.864 60.000 0.00 0.00 34.08 3.36
4844 8203 1.251527 ATTCTCGCCACTCCACGACT 61.252 55.000 0.00 0.00 34.08 4.18
4845 8204 0.802607 GATTCTCGCCACTCCACGAC 60.803 60.000 0.00 0.00 34.08 4.34
4846 8205 1.511305 GATTCTCGCCACTCCACGA 59.489 57.895 0.00 0.00 36.73 4.35
4847 8206 1.519455 GGATTCTCGCCACTCCACG 60.519 63.158 0.00 0.00 0.00 4.94
4848 8207 1.519455 CGGATTCTCGCCACTCCAC 60.519 63.158 0.00 0.00 0.00 4.02
4849 8208 1.254975 TTCGGATTCTCGCCACTCCA 61.255 55.000 0.00 0.00 0.00 3.86
4850 8209 0.806492 GTTCGGATTCTCGCCACTCC 60.806 60.000 0.00 0.00 0.00 3.85
4851 8210 0.108804 TGTTCGGATTCTCGCCACTC 60.109 55.000 0.00 0.00 0.00 3.51
4852 8211 0.320374 TTGTTCGGATTCTCGCCACT 59.680 50.000 0.00 0.00 0.00 4.00
4853 8212 0.721718 CTTGTTCGGATTCTCGCCAC 59.278 55.000 0.00 0.00 0.00 5.01
4854 8213 1.019278 GCTTGTTCGGATTCTCGCCA 61.019 55.000 0.00 0.00 0.00 5.69
4855 8214 1.706287 GGCTTGTTCGGATTCTCGCC 61.706 60.000 0.00 0.00 0.00 5.54
4856 8215 1.706287 GGGCTTGTTCGGATTCTCGC 61.706 60.000 0.00 0.00 0.00 5.03
4857 8216 0.108138 AGGGCTTGTTCGGATTCTCG 60.108 55.000 0.00 0.00 0.00 4.04
4858 8217 2.981859 TAGGGCTTGTTCGGATTCTC 57.018 50.000 0.00 0.00 0.00 2.87
4859 8218 3.713826 TTTAGGGCTTGTTCGGATTCT 57.286 42.857 0.00 0.00 0.00 2.40
4860 8219 4.983671 ATTTTAGGGCTTGTTCGGATTC 57.016 40.909 0.00 0.00 0.00 2.52
4861 8220 4.159693 GGAATTTTAGGGCTTGTTCGGATT 59.840 41.667 0.00 0.00 0.00 3.01
4862 8221 3.699538 GGAATTTTAGGGCTTGTTCGGAT 59.300 43.478 0.00 0.00 0.00 4.18
4863 8222 3.086282 GGAATTTTAGGGCTTGTTCGGA 58.914 45.455 0.00 0.00 0.00 4.55
4864 8223 2.165641 GGGAATTTTAGGGCTTGTTCGG 59.834 50.000 0.00 0.00 0.00 4.30
4865 8224 2.159435 CGGGAATTTTAGGGCTTGTTCG 60.159 50.000 0.00 0.00 0.00 3.95
4866 8225 2.823747 ACGGGAATTTTAGGGCTTGTTC 59.176 45.455 0.00 0.00 0.00 3.18
4867 8226 2.560981 CACGGGAATTTTAGGGCTTGTT 59.439 45.455 0.00 0.00 0.00 2.83
4868 8227 2.167662 CACGGGAATTTTAGGGCTTGT 58.832 47.619 0.00 0.00 0.00 3.16
4869 8228 1.135112 GCACGGGAATTTTAGGGCTTG 60.135 52.381 0.00 0.00 0.00 4.01
4870 8229 1.182667 GCACGGGAATTTTAGGGCTT 58.817 50.000 0.00 0.00 0.00 4.35
4871 8230 0.683179 GGCACGGGAATTTTAGGGCT 60.683 55.000 0.00 0.00 32.83 5.19
4872 8231 1.672854 GGGCACGGGAATTTTAGGGC 61.673 60.000 0.00 0.00 0.00 5.19
4873 8232 1.040893 GGGGCACGGGAATTTTAGGG 61.041 60.000 0.00 0.00 0.00 3.53
4874 8233 1.040893 GGGGGCACGGGAATTTTAGG 61.041 60.000 0.00 0.00 0.00 2.69
4875 8234 0.033503 AGGGGGCACGGGAATTTTAG 60.034 55.000 0.00 0.00 0.00 1.85
4876 8235 0.033894 GAGGGGGCACGGGAATTTTA 60.034 55.000 0.00 0.00 0.00 1.52
4877 8236 1.304962 GAGGGGGCACGGGAATTTT 60.305 57.895 0.00 0.00 0.00 1.82
4878 8237 1.874299 ATGAGGGGGCACGGGAATTT 61.874 55.000 0.00 0.00 0.00 1.82
4879 8238 2.316586 ATGAGGGGGCACGGGAATT 61.317 57.895 0.00 0.00 0.00 2.17
4880 8239 2.696125 ATGAGGGGGCACGGGAAT 60.696 61.111 0.00 0.00 0.00 3.01
4881 8240 3.727258 CATGAGGGGGCACGGGAA 61.727 66.667 0.00 0.00 0.00 3.97
4891 8250 4.133373 CAGGGGTGGGCATGAGGG 62.133 72.222 0.00 0.00 0.00 4.30
4892 8251 4.828296 GCAGGGGTGGGCATGAGG 62.828 72.222 0.00 0.00 0.00 3.86
4904 8263 3.687321 ATGTGGTAGCAGCGCAGGG 62.687 63.158 11.47 0.00 39.60 4.45
4905 8264 0.461870 TAATGTGGTAGCAGCGCAGG 60.462 55.000 11.47 1.51 39.60 4.85
4906 8265 0.933097 CTAATGTGGTAGCAGCGCAG 59.067 55.000 11.47 1.31 39.60 5.18
4907 8266 0.249120 ACTAATGTGGTAGCAGCGCA 59.751 50.000 11.47 4.52 40.58 6.09
4908 8267 0.931005 GACTAATGTGGTAGCAGCGC 59.069 55.000 0.00 0.00 0.00 5.92
4909 8268 1.200483 CGACTAATGTGGTAGCAGCG 58.800 55.000 0.00 0.00 0.00 5.18
4910 8269 1.927174 CACGACTAATGTGGTAGCAGC 59.073 52.381 0.00 0.00 33.39 5.25
4918 8277 0.108804 AGCCGACCACGACTAATGTG 60.109 55.000 0.00 0.00 42.66 3.21
4919 8278 0.108804 CAGCCGACCACGACTAATGT 60.109 55.000 0.00 0.00 42.66 2.71
4920 8279 0.108804 ACAGCCGACCACGACTAATG 60.109 55.000 0.00 0.00 42.66 1.90
4921 8280 0.172803 GACAGCCGACCACGACTAAT 59.827 55.000 0.00 0.00 42.66 1.73
4922 8281 1.582968 GACAGCCGACCACGACTAA 59.417 57.895 0.00 0.00 42.66 2.24
4923 8282 2.338015 GGACAGCCGACCACGACTA 61.338 63.158 0.00 0.00 42.66 2.59
4924 8283 3.681835 GGACAGCCGACCACGACT 61.682 66.667 0.00 0.00 42.66 4.18
4925 8284 4.736896 GGGACAGCCGACCACGAC 62.737 72.222 0.00 0.00 42.66 4.34
4928 8287 3.192103 AAAGGGGACAGCCGACCAC 62.192 63.158 0.00 0.00 33.83 4.16
4929 8288 2.852075 AAAGGGGACAGCCGACCA 60.852 61.111 0.00 0.00 33.83 4.02
4930 8289 2.046217 GAAAGGGGACAGCCGACC 60.046 66.667 0.00 0.00 33.83 4.79
4931 8290 1.671379 GTGAAAGGGGACAGCCGAC 60.671 63.158 0.00 0.00 33.83 4.79
4932 8291 2.747686 GTGAAAGGGGACAGCCGA 59.252 61.111 0.00 0.00 33.83 5.54
4933 8292 2.521958 ATCGTGAAAGGGGACAGCCG 62.522 60.000 0.00 0.00 33.83 5.52
4934 8293 1.026718 CATCGTGAAAGGGGACAGCC 61.027 60.000 0.00 0.00 0.00 4.85
4935 8294 0.036388 TCATCGTGAAAGGGGACAGC 60.036 55.000 0.00 0.00 0.00 4.40
4936 8295 2.679837 CAATCATCGTGAAAGGGGACAG 59.320 50.000 0.00 0.00 0.00 3.51
4937 8296 2.617788 CCAATCATCGTGAAAGGGGACA 60.618 50.000 0.00 0.00 0.00 4.02
4938 8297 2.017049 CCAATCATCGTGAAAGGGGAC 58.983 52.381 0.00 0.00 0.00 4.46
4939 8298 1.681780 GCCAATCATCGTGAAAGGGGA 60.682 52.381 0.00 0.00 0.00 4.81
4940 8299 0.740737 GCCAATCATCGTGAAAGGGG 59.259 55.000 9.42 0.00 0.00 4.79
4941 8300 1.462616 TGCCAATCATCGTGAAAGGG 58.537 50.000 9.42 0.00 0.00 3.95
4942 8301 3.574284 TTTGCCAATCATCGTGAAAGG 57.426 42.857 0.00 0.00 0.00 3.11
4943 8302 3.361644 CGTTTTGCCAATCATCGTGAAAG 59.638 43.478 0.00 0.00 0.00 2.62
4944 8303 3.304257 CGTTTTGCCAATCATCGTGAAA 58.696 40.909 0.00 0.00 0.00 2.69
4945 8304 2.351253 CCGTTTTGCCAATCATCGTGAA 60.351 45.455 0.00 0.00 0.00 3.18
4946 8305 1.198867 CCGTTTTGCCAATCATCGTGA 59.801 47.619 0.00 0.00 0.00 4.35
4947 8306 1.616620 CCGTTTTGCCAATCATCGTG 58.383 50.000 0.00 0.00 0.00 4.35
4948 8307 0.525761 CCCGTTTTGCCAATCATCGT 59.474 50.000 0.00 0.00 0.00 3.73
4949 8308 0.525761 ACCCGTTTTGCCAATCATCG 59.474 50.000 0.00 0.00 0.00 3.84
4950 8309 2.099098 CCTACCCGTTTTGCCAATCATC 59.901 50.000 0.00 0.00 0.00 2.92
4951 8310 2.099405 CCTACCCGTTTTGCCAATCAT 58.901 47.619 0.00 0.00 0.00 2.45
4952 8311 1.202952 ACCTACCCGTTTTGCCAATCA 60.203 47.619 0.00 0.00 0.00 2.57
4953 8312 1.541379 ACCTACCCGTTTTGCCAATC 58.459 50.000 0.00 0.00 0.00 2.67
4954 8313 1.616374 CAACCTACCCGTTTTGCCAAT 59.384 47.619 0.00 0.00 0.00 3.16
4955 8314 1.033574 CAACCTACCCGTTTTGCCAA 58.966 50.000 0.00 0.00 0.00 4.52
4956 8315 0.106619 ACAACCTACCCGTTTTGCCA 60.107 50.000 0.00 0.00 0.00 4.92
4957 8316 0.594602 GACAACCTACCCGTTTTGCC 59.405 55.000 0.00 0.00 0.00 4.52
4958 8317 0.594602 GGACAACCTACCCGTTTTGC 59.405 55.000 0.00 0.00 0.00 3.68
4959 8318 1.241165 GGGACAACCTACCCGTTTTG 58.759 55.000 0.00 0.00 36.56 2.44
4960 8319 3.731716 GGGACAACCTACCCGTTTT 57.268 52.632 0.00 0.00 36.56 2.43
4975 8334 2.221299 CCAAGGGTCCGACAAGGGA 61.221 63.158 0.00 0.00 41.52 4.20
4976 8335 1.774894 TTCCAAGGGTCCGACAAGGG 61.775 60.000 0.00 0.00 41.52 3.95
4977 8336 0.321653 CTTCCAAGGGTCCGACAAGG 60.322 60.000 0.00 0.00 42.97 3.61
4978 8337 0.955919 GCTTCCAAGGGTCCGACAAG 60.956 60.000 0.00 0.00 0.00 3.16
4979 8338 1.072505 GCTTCCAAGGGTCCGACAA 59.927 57.895 0.00 0.00 0.00 3.18
4980 8339 2.747686 GCTTCCAAGGGTCCGACA 59.252 61.111 0.00 0.00 0.00 4.35
4981 8340 2.046217 GGCTTCCAAGGGTCCGAC 60.046 66.667 0.00 0.00 0.00 4.79
4982 8341 2.203938 AGGCTTCCAAGGGTCCGA 60.204 61.111 0.00 0.00 0.00 4.55
4983 8342 2.045926 CAGGCTTCCAAGGGTCCG 60.046 66.667 0.00 0.00 0.00 4.79
4984 8343 2.361737 GCAGGCTTCCAAGGGTCC 60.362 66.667 0.00 0.00 0.00 4.46
4985 8344 2.747855 CGCAGGCTTCCAAGGGTC 60.748 66.667 0.00 0.00 0.00 4.46
4999 8358 2.126071 GTCTTCGGTGCTAGCGCA 60.126 61.111 28.28 7.43 45.60 6.09
5000 8359 2.886124 GGTCTTCGGTGCTAGCGC 60.886 66.667 20.17 20.17 39.21 5.92
5001 8360 2.202756 GGGTCTTCGGTGCTAGCG 60.203 66.667 10.77 0.00 40.97 4.26
5002 8361 0.107654 AATGGGTCTTCGGTGCTAGC 60.108 55.000 8.10 8.10 0.00 3.42
5003 8362 1.656652 CAATGGGTCTTCGGTGCTAG 58.343 55.000 0.00 0.00 0.00 3.42
5004 8363 0.251916 CCAATGGGTCTTCGGTGCTA 59.748 55.000 0.00 0.00 0.00 3.49
5005 8364 1.002134 CCAATGGGTCTTCGGTGCT 60.002 57.895 0.00 0.00 0.00 4.40
5006 8365 3.590824 CCAATGGGTCTTCGGTGC 58.409 61.111 0.00 0.00 0.00 5.01
5018 8377 0.887247 TCAAATCGTGGCCACCAATG 59.113 50.000 29.95 21.72 34.18 2.82
5019 8378 1.477700 CATCAAATCGTGGCCACCAAT 59.522 47.619 29.95 20.16 34.18 3.16
5020 8379 0.887247 CATCAAATCGTGGCCACCAA 59.113 50.000 29.95 18.73 34.18 3.67
5021 8380 0.964860 CCATCAAATCGTGGCCACCA 60.965 55.000 29.95 19.24 0.00 4.17
5022 8381 0.965363 ACCATCAAATCGTGGCCACC 60.965 55.000 29.95 12.55 39.13 4.61
5023 8382 0.171007 CACCATCAAATCGTGGCCAC 59.829 55.000 26.78 26.78 39.13 5.01
5024 8383 1.594194 GCACCATCAAATCGTGGCCA 61.594 55.000 0.00 0.00 39.13 5.36
5025 8384 1.139520 GCACCATCAAATCGTGGCC 59.860 57.895 0.00 0.00 39.13 5.36
5026 8385 0.243365 TTGCACCATCAAATCGTGGC 59.757 50.000 0.00 0.00 39.13 5.01
5027 8386 1.402720 GGTTGCACCATCAAATCGTGG 60.403 52.381 0.00 0.00 38.42 4.94
5028 8387 1.269174 TGGTTGCACCATCAAATCGTG 59.731 47.619 4.16 0.00 44.79 4.35
5029 8388 1.614996 TGGTTGCACCATCAAATCGT 58.385 45.000 4.16 0.00 44.79 3.73
5039 8398 1.445518 CCCTTTTGGTGGTTGCACC 59.554 57.895 0.00 0.00 45.20 5.01
5040 8399 1.227527 GCCCTTTTGGTGGTTGCAC 60.228 57.895 0.00 0.00 38.10 4.57
5041 8400 2.790791 CGCCCTTTTGGTGGTTGCA 61.791 57.895 0.00 0.00 41.22 4.08
5042 8401 2.028925 CGCCCTTTTGGTGGTTGC 59.971 61.111 0.00 0.00 41.22 4.17
5043 8402 1.362355 GTCGCCCTTTTGGTGGTTG 59.638 57.895 0.00 0.00 45.26 3.77
5044 8403 1.076632 TGTCGCCCTTTTGGTGGTT 60.077 52.632 0.00 0.00 45.26 3.67
5045 8404 1.826487 GTGTCGCCCTTTTGGTGGT 60.826 57.895 0.00 0.00 45.26 4.16
5046 8405 1.178534 ATGTGTCGCCCTTTTGGTGG 61.179 55.000 0.00 0.00 45.26 4.61
5047 8406 0.039256 CATGTGTCGCCCTTTTGGTG 60.039 55.000 0.00 0.00 46.66 4.17
5048 8407 1.805428 GCATGTGTCGCCCTTTTGGT 61.805 55.000 0.00 0.00 38.10 3.67
5049 8408 1.080569 GCATGTGTCGCCCTTTTGG 60.081 57.895 0.00 0.00 39.97 3.28
5050 8409 0.031857 TTGCATGTGTCGCCCTTTTG 59.968 50.000 0.00 0.00 0.00 2.44
5051 8410 0.031994 GTTGCATGTGTCGCCCTTTT 59.968 50.000 0.00 0.00 0.00 2.27
5052 8411 1.659794 GTTGCATGTGTCGCCCTTT 59.340 52.632 0.00 0.00 0.00 3.11
5053 8412 2.268076 GGTTGCATGTGTCGCCCTT 61.268 57.895 0.00 0.00 0.00 3.95
5054 8413 2.672996 GGTTGCATGTGTCGCCCT 60.673 61.111 0.00 0.00 0.00 5.19
5055 8414 2.672996 AGGTTGCATGTGTCGCCC 60.673 61.111 0.00 0.00 0.00 6.13
5056 8415 1.672356 AGAGGTTGCATGTGTCGCC 60.672 57.895 0.00 0.00 0.00 5.54
5057 8416 1.499056 CAGAGGTTGCATGTGTCGC 59.501 57.895 0.00 0.00 0.00 5.19
5083 8442 2.923035 ATCCCATACCCGGCCTCG 60.923 66.667 0.00 0.00 0.00 4.63
5084 8443 2.750350 CATCCCATACCCGGCCTC 59.250 66.667 0.00 0.00 0.00 4.70
5085 8444 2.713111 ATCCATCCCATACCCGGCCT 62.713 60.000 0.00 0.00 0.00 5.19
5086 8445 1.789576 AATCCATCCCATACCCGGCC 61.790 60.000 0.00 0.00 0.00 6.13
5087 8446 0.322546 GAATCCATCCCATACCCGGC 60.323 60.000 0.00 0.00 0.00 6.13
5088 8447 1.003580 CTGAATCCATCCCATACCCGG 59.996 57.143 0.00 0.00 0.00 5.73
5089 8448 2.479566 CTGAATCCATCCCATACCCG 57.520 55.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.