Multiple sequence alignment - TraesCS5D01G295200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G295200 chr5D 100.000 6248 0 0 1 6248 393061063 393054816 0.000000e+00 11538.0
1 TraesCS5D01G295200 chr5D 94.148 3315 139 17 1351 4656 390692748 390696016 0.000000e+00 4996.0
2 TraesCS5D01G295200 chr5D 98.305 531 8 1 5719 6248 393045102 393044572 0.000000e+00 929.0
3 TraesCS5D01G295200 chr5D 96.189 551 21 0 3 553 33788135 33787585 0.000000e+00 902.0
4 TraesCS5D01G295200 chr5D 93.846 455 22 1 4787 5235 390696017 390696471 0.000000e+00 680.0
5 TraesCS5D01G295200 chr5D 91.557 379 16 5 819 1184 390692389 390692764 5.590000e-140 508.0
6 TraesCS5D01G295200 chr5D 88.646 229 26 0 2859 3087 538767209 538767437 4.770000e-71 279.0
7 TraesCS5D01G295200 chr5D 92.029 138 10 1 681 817 390692207 390692344 6.390000e-45 193.0
8 TraesCS5D01G295200 chr5B 97.216 3305 75 8 1353 4653 473118367 473115076 0.000000e+00 5578.0
9 TraesCS5D01G295200 chr5B 95.575 3322 96 17 1353 4664 471021507 471024787 0.000000e+00 5273.0
10 TraesCS5D01G295200 chr5B 98.178 933 16 1 4786 5718 473115072 473114141 0.000000e+00 1628.0
11 TraesCS5D01G295200 chr5B 97.059 510 8 2 676 1184 473118856 473118353 0.000000e+00 852.0
12 TraesCS5D01G295200 chr5B 93.074 462 25 2 4786 5241 471024784 471025244 0.000000e+00 669.0
13 TraesCS5D01G295200 chr5B 88.955 507 28 13 694 1184 471021027 471021521 8.960000e-168 601.0
14 TraesCS5D01G295200 chr5B 85.714 399 44 9 2673 3065 693677346 693677737 5.830000e-110 409.0
15 TraesCS5D01G295200 chr5B 93.684 190 10 2 1177 1365 2057508 2057696 3.690000e-72 283.0
16 TraesCS5D01G295200 chr5B 100.000 32 0 0 593 624 473120173 473120142 6.760000e-05 60.2
17 TraesCS5D01G295200 chr5A 94.398 2660 101 19 1353 3996 494229583 494232210 0.000000e+00 4043.0
18 TraesCS5D01G295200 chr5A 96.519 632 22 0 4033 4664 494232209 494232840 0.000000e+00 1046.0
19 TraesCS5D01G295200 chr5A 92.998 457 26 1 4786 5236 494232837 494233293 0.000000e+00 662.0
20 TraesCS5D01G295200 chr5A 89.677 465 37 6 655 1114 494229100 494229558 3.250000e-162 582.0
21 TraesCS5D01G295200 chr5A 89.112 349 34 4 2708 3055 297738048 297738393 1.240000e-116 431.0
22 TraesCS5D01G295200 chr5A 84.323 421 43 14 2681 3090 485382979 485382571 2.110000e-104 390.0
23 TraesCS5D01G295200 chr5A 93.836 146 9 0 4663 4808 135538704 135538559 2.930000e-53 220.0
24 TraesCS5D01G295200 chr5A 72.027 740 173 25 3900 4624 490594396 490593676 8.270000e-44 189.0
25 TraesCS5D01G295200 chr5A 79.577 142 29 0 4900 5041 512621102 512620961 1.110000e-17 102.0
26 TraesCS5D01G295200 chr6D 98.138 537 8 2 5713 6248 66076505 66077040 0.000000e+00 935.0
27 TraesCS5D01G295200 chr6D 98.127 534 6 3 5719 6248 66086592 66087125 0.000000e+00 928.0
28 TraesCS5D01G295200 chr6D 96.564 553 19 0 1 553 461197836 461197284 0.000000e+00 917.0
29 TraesCS5D01G295200 chr7D 98.124 533 7 3 5719 6248 241223044 241222512 0.000000e+00 926.0
30 TraesCS5D01G295200 chr7D 98.120 532 6 4 5719 6248 241212958 241212429 0.000000e+00 924.0
31 TraesCS5D01G295200 chr7D 96.014 552 22 0 1 552 7985604 7985053 0.000000e+00 898.0
32 TraesCS5D01G295200 chr7D 95.848 554 21 2 1 553 157716625 157716073 0.000000e+00 894.0
33 TraesCS5D01G295200 chr7D 95.341 558 25 1 1 557 70538194 70538751 0.000000e+00 885.0
34 TraesCS5D01G295200 chr7D 97.701 174 4 0 1185 1358 616769171 616769344 3.660000e-77 300.0
35 TraesCS5D01G295200 chr1D 98.124 533 5 5 5719 6248 489036661 489036131 0.000000e+00 924.0
36 TraesCS5D01G295200 chr1D 98.124 533 2 5 5719 6248 128739746 128740273 0.000000e+00 922.0
37 TraesCS5D01G295200 chr1D 89.003 291 22 5 2796 3086 324746928 324747208 9.970000e-93 351.0
38 TraesCS5D01G295200 chr1D 97.015 134 3 1 4659 4792 255827753 255827885 2.270000e-54 224.0
39 TraesCS5D01G295200 chr3B 96.745 553 18 0 1 553 805855926 805856478 0.000000e+00 922.0
40 TraesCS5D01G295200 chr3B 96.377 552 20 0 1 552 801411422 801411973 0.000000e+00 909.0
41 TraesCS5D01G295200 chr3B 94.444 144 7 1 4648 4790 630594065 630594208 2.930000e-53 220.0
42 TraesCS5D01G295200 chr2D 97.749 533 8 4 5719 6248 281837128 281837659 0.000000e+00 915.0
43 TraesCS5D01G295200 chr2D 97.749 533 8 4 5719 6248 281847209 281847740 0.000000e+00 915.0
44 TraesCS5D01G295200 chr2D 96.558 552 19 0 1 552 597496883 597496332 0.000000e+00 915.0
45 TraesCS5D01G295200 chr2D 95.841 553 22 1 1 552 43225698 43226250 0.000000e+00 893.0
46 TraesCS5D01G295200 chr2D 87.681 414 43 5 2673 3085 87754474 87754068 5.670000e-130 475.0
47 TraesCS5D01G295200 chr2D 96.648 179 6 0 1185 1363 323517494 323517316 1.320000e-76 298.0
48 TraesCS5D01G295200 chr2D 96.648 179 6 0 1185 1363 573905450 573905272 1.320000e-76 298.0
49 TraesCS5D01G295200 chr2D 94.366 142 8 0 4661 4802 468789171 468789312 1.050000e-52 219.0
50 TraesCS5D01G295200 chr2A 86.052 423 44 6 2673 3085 88010417 88010000 2.070000e-119 440.0
51 TraesCS5D01G295200 chr4A 86.480 392 38 9 2702 3088 572842860 572843241 3.480000e-112 416.0
52 TraesCS5D01G295200 chr4A 96.111 180 6 1 1185 1363 579437846 579437667 6.130000e-75 292.0
53 TraesCS5D01G295200 chr4A 88.646 229 26 0 2859 3087 629915571 629915343 4.770000e-71 279.0
54 TraesCS5D01G295200 chr7A 87.464 343 29 9 2685 3024 667232296 667231965 3.530000e-102 383.0
55 TraesCS5D01G295200 chr7A 86.275 357 34 12 2734 3086 400068720 400069065 2.130000e-99 374.0
56 TraesCS5D01G295200 chr3D 98.870 177 2 0 1184 1360 582161868 582161692 3.640000e-82 316.0
57 TraesCS5D01G295200 chr3D 95.676 185 6 1 1177 1359 10295064 10295248 4.740000e-76 296.0
58 TraesCS5D01G295200 chr3D 90.441 136 10 3 2794 2928 105428733 105428600 6.440000e-40 176.0
59 TraesCS5D01G295200 chr3D 93.939 66 2 1 2675 2740 105428783 105428720 1.430000e-16 99.0
60 TraesCS5D01G295200 chr3A 97.674 172 4 0 1186 1357 708640569 708640740 4.740000e-76 296.0
61 TraesCS5D01G295200 chr3A 94.652 187 10 0 1176 1362 171039779 171039965 2.200000e-74 291.0
62 TraesCS5D01G295200 chr6B 99.219 128 1 0 4662 4789 30348373 30348246 1.350000e-56 231.0
63 TraesCS5D01G295200 chr6A 96.377 138 3 2 4657 4793 542709479 542709343 6.300000e-55 226.0
64 TraesCS5D01G295200 chr1B 95.070 142 6 1 4655 4796 683747953 683748093 8.150000e-54 222.0
65 TraesCS5D01G295200 chr4D 93.878 147 8 1 4648 4793 492804267 492804413 2.930000e-53 220.0
66 TraesCS5D01G295200 chr2B 96.947 131 4 0 4662 4792 548925137 548925007 2.930000e-53 220.0
67 TraesCS5D01G295200 chr7B 95.833 48 2 0 589 636 583151940 583151987 1.870000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G295200 chr5D 393054816 393061063 6247 True 11538.00 11538 100.000000 1 6248 1 chr5D.!!$R3 6247
1 TraesCS5D01G295200 chr5D 390692207 390696471 4264 False 1594.25 4996 92.895000 681 5235 4 chr5D.!!$F2 4554
2 TraesCS5D01G295200 chr5D 393044572 393045102 530 True 929.00 929 98.305000 5719 6248 1 chr5D.!!$R2 529
3 TraesCS5D01G295200 chr5D 33787585 33788135 550 True 902.00 902 96.189000 3 553 1 chr5D.!!$R1 550
4 TraesCS5D01G295200 chr5B 471021027 471025244 4217 False 2181.00 5273 92.534667 694 5241 3 chr5B.!!$F3 4547
5 TraesCS5D01G295200 chr5B 473114141 473120173 6032 True 2029.55 5578 98.113250 593 5718 4 chr5B.!!$R1 5125
6 TraesCS5D01G295200 chr5A 494229100 494233293 4193 False 1583.25 4043 93.398000 655 5236 4 chr5A.!!$F2 4581
7 TraesCS5D01G295200 chr6D 66076505 66077040 535 False 935.00 935 98.138000 5713 6248 1 chr6D.!!$F1 535
8 TraesCS5D01G295200 chr6D 66086592 66087125 533 False 928.00 928 98.127000 5719 6248 1 chr6D.!!$F2 529
9 TraesCS5D01G295200 chr6D 461197284 461197836 552 True 917.00 917 96.564000 1 553 1 chr6D.!!$R1 552
10 TraesCS5D01G295200 chr7D 241222512 241223044 532 True 926.00 926 98.124000 5719 6248 1 chr7D.!!$R4 529
11 TraesCS5D01G295200 chr7D 241212429 241212958 529 True 924.00 924 98.120000 5719 6248 1 chr7D.!!$R3 529
12 TraesCS5D01G295200 chr7D 7985053 7985604 551 True 898.00 898 96.014000 1 552 1 chr7D.!!$R1 551
13 TraesCS5D01G295200 chr7D 157716073 157716625 552 True 894.00 894 95.848000 1 553 1 chr7D.!!$R2 552
14 TraesCS5D01G295200 chr7D 70538194 70538751 557 False 885.00 885 95.341000 1 557 1 chr7D.!!$F1 556
15 TraesCS5D01G295200 chr1D 489036131 489036661 530 True 924.00 924 98.124000 5719 6248 1 chr1D.!!$R1 529
16 TraesCS5D01G295200 chr1D 128739746 128740273 527 False 922.00 922 98.124000 5719 6248 1 chr1D.!!$F1 529
17 TraesCS5D01G295200 chr3B 805855926 805856478 552 False 922.00 922 96.745000 1 553 1 chr3B.!!$F3 552
18 TraesCS5D01G295200 chr3B 801411422 801411973 551 False 909.00 909 96.377000 1 552 1 chr3B.!!$F2 551
19 TraesCS5D01G295200 chr2D 281837128 281837659 531 False 915.00 915 97.749000 5719 6248 1 chr2D.!!$F2 529
20 TraesCS5D01G295200 chr2D 281847209 281847740 531 False 915.00 915 97.749000 5719 6248 1 chr2D.!!$F3 529
21 TraesCS5D01G295200 chr2D 597496332 597496883 551 True 915.00 915 96.558000 1 552 1 chr2D.!!$R4 551
22 TraesCS5D01G295200 chr2D 43225698 43226250 552 False 893.00 893 95.841000 1 552 1 chr2D.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 586 0.036858 GATTAGCCCCTCGATCAGCC 60.037 60.0 0.0 0.0 0.00 4.85 F
633 635 0.394565 ATTGAGATCTAGCCACGCCC 59.605 55.0 0.0 0.0 0.00 6.13 F
636 638 0.466124 GAGATCTAGCCACGCCCTTT 59.534 55.0 0.0 0.0 0.00 3.11 F
667 669 0.695924 TGCCATTCTTTCCTTCGGGA 59.304 50.0 0.0 0.0 43.37 5.14 F
1275 2568 0.744057 CCCATATCAGCACACACGCA 60.744 55.0 0.0 0.0 0.00 5.24 F
1477 2770 0.761802 TGGGCACAAAATTGGGGAAC 59.238 50.0 0.0 0.0 30.51 3.62 F
3554 4872 0.755327 TAGAGATGCTGCCCGTGCTA 60.755 55.0 0.0 0.0 38.71 3.49 F
4429 5747 0.603569 CTATGCCCGGCGATAGAAGT 59.396 55.0 9.3 0.0 39.76 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2566 3868 0.890683 GCTTGCACCATAGCCAAACT 59.109 50.000 0.00 0.00 0.00 2.66 R
2647 3950 7.148137 GGTGTTTTCTTGGGTATAACATAGGTG 60.148 40.741 0.00 0.00 32.10 4.00 R
2804 4110 6.749036 AAAGTTCAGTTAGAGAGAAAGGGA 57.251 37.500 0.00 0.00 0.00 4.20 R
2805 4111 8.940952 CATAAAAGTTCAGTTAGAGAGAAAGGG 58.059 37.037 0.00 0.00 0.00 3.95 R
2854 4160 1.458639 AAGCAAGAACCAGCAGCCAC 61.459 55.000 0.00 0.00 0.00 5.01 R
3569 4887 1.453155 ATCCAGTTGTGTCGGAATGC 58.547 50.000 0.00 0.00 31.18 3.56 R
4660 5983 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73 R
5346 6675 1.547372 GTTGGAAGCATGCACTGGATT 59.453 47.619 21.98 3.54 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 144 4.531357 AGTACCTGTATAGGCACTGGTA 57.469 45.455 10.45 7.77 46.75 3.25
195 197 8.862325 ACACATATAGTTCAATGAAGACCAAA 57.138 30.769 0.00 0.00 0.00 3.28
201 203 4.828939 AGTTCAATGAAGACCAAATGCTCA 59.171 37.500 0.00 0.00 0.00 4.26
278 280 8.989131 AGCAGTATGGGACTAAACTTAATTAGA 58.011 33.333 3.40 0.00 35.64 2.10
554 556 8.921205 TGTATAAGGTTTTCCCTAGTAGTGATC 58.079 37.037 0.00 0.00 45.47 2.92
555 557 9.145442 GTATAAGGTTTTCCCTAGTAGTGATCT 57.855 37.037 0.00 0.00 45.47 2.75
557 559 6.301169 AGGTTTTCCCTAGTAGTGATCTTG 57.699 41.667 0.00 0.00 43.87 3.02
558 560 5.785940 AGGTTTTCCCTAGTAGTGATCTTGT 59.214 40.000 0.00 0.00 43.87 3.16
559 561 6.070710 AGGTTTTCCCTAGTAGTGATCTTGTC 60.071 42.308 0.00 0.00 43.87 3.18
560 562 6.070710 GGTTTTCCCTAGTAGTGATCTTGTCT 60.071 42.308 0.00 0.00 0.00 3.41
561 563 6.777213 TTTCCCTAGTAGTGATCTTGTCTC 57.223 41.667 0.00 0.00 0.00 3.36
562 564 5.718801 TCCCTAGTAGTGATCTTGTCTCT 57.281 43.478 0.00 0.00 35.08 3.10
563 565 6.080969 TCCCTAGTAGTGATCTTGTCTCTT 57.919 41.667 0.00 0.00 33.08 2.85
564 566 6.123651 TCCCTAGTAGTGATCTTGTCTCTTC 58.876 44.000 0.00 0.00 33.08 2.87
565 567 5.008217 CCCTAGTAGTGATCTTGTCTCTTCG 59.992 48.000 0.00 0.00 33.08 3.79
566 568 5.818336 CCTAGTAGTGATCTTGTCTCTTCGA 59.182 44.000 0.00 0.00 33.08 3.71
567 569 6.485313 CCTAGTAGTGATCTTGTCTCTTCGAT 59.515 42.308 0.00 0.00 33.08 3.59
568 570 6.767524 AGTAGTGATCTTGTCTCTTCGATT 57.232 37.500 0.00 0.00 33.08 3.34
569 571 7.867305 AGTAGTGATCTTGTCTCTTCGATTA 57.133 36.000 0.00 0.00 33.08 1.75
570 572 7.925993 AGTAGTGATCTTGTCTCTTCGATTAG 58.074 38.462 0.00 0.00 33.08 1.73
571 573 5.587289 AGTGATCTTGTCTCTTCGATTAGC 58.413 41.667 0.00 0.00 0.00 3.09
572 574 4.742659 GTGATCTTGTCTCTTCGATTAGCC 59.257 45.833 0.00 0.00 0.00 3.93
573 575 3.802948 TCTTGTCTCTTCGATTAGCCC 57.197 47.619 0.00 0.00 0.00 5.19
574 576 2.431057 TCTTGTCTCTTCGATTAGCCCC 59.569 50.000 0.00 0.00 0.00 5.80
575 577 2.160721 TGTCTCTTCGATTAGCCCCT 57.839 50.000 0.00 0.00 0.00 4.79
576 578 2.032620 TGTCTCTTCGATTAGCCCCTC 58.967 52.381 0.00 0.00 0.00 4.30
577 579 1.001158 GTCTCTTCGATTAGCCCCTCG 60.001 57.143 0.00 0.00 36.25 4.63
578 580 1.133884 TCTCTTCGATTAGCCCCTCGA 60.134 52.381 0.00 0.00 41.76 4.04
579 581 1.889829 CTCTTCGATTAGCCCCTCGAT 59.110 52.381 3.37 0.00 42.84 3.59
580 582 1.887198 TCTTCGATTAGCCCCTCGATC 59.113 52.381 3.37 0.00 42.84 3.69
581 583 1.613925 CTTCGATTAGCCCCTCGATCA 59.386 52.381 3.37 0.00 42.84 2.92
582 584 1.248486 TCGATTAGCCCCTCGATCAG 58.752 55.000 0.00 0.00 38.86 2.90
583 585 0.389166 CGATTAGCCCCTCGATCAGC 60.389 60.000 0.00 0.00 37.05 4.26
584 586 0.036858 GATTAGCCCCTCGATCAGCC 60.037 60.000 0.00 0.00 0.00 4.85
585 587 1.484444 ATTAGCCCCTCGATCAGCCC 61.484 60.000 0.00 0.00 0.00 5.19
586 588 2.605535 TTAGCCCCTCGATCAGCCCT 62.606 60.000 0.00 0.00 0.00 5.19
587 589 3.934962 GCCCCTCGATCAGCCCTC 61.935 72.222 0.00 0.00 0.00 4.30
588 590 2.444706 CCCCTCGATCAGCCCTCA 60.445 66.667 0.00 0.00 0.00 3.86
589 591 2.801631 CCCCTCGATCAGCCCTCAC 61.802 68.421 0.00 0.00 0.00 3.51
590 592 1.760086 CCCTCGATCAGCCCTCACT 60.760 63.158 0.00 0.00 0.00 3.41
591 593 0.468214 CCCTCGATCAGCCCTCACTA 60.468 60.000 0.00 0.00 0.00 2.74
624 626 9.314321 GGTTAAATTTCAGTCGATTGAGATCTA 57.686 33.333 13.27 2.90 0.00 1.98
626 628 7.475771 AAATTTCAGTCGATTGAGATCTAGC 57.524 36.000 13.27 0.00 0.00 3.42
627 629 4.576216 TTCAGTCGATTGAGATCTAGCC 57.424 45.455 10.70 0.00 0.00 3.93
628 630 3.555966 TCAGTCGATTGAGATCTAGCCA 58.444 45.455 6.51 0.00 0.00 4.75
630 632 2.292016 AGTCGATTGAGATCTAGCCACG 59.708 50.000 0.00 0.00 0.00 4.94
631 633 1.001268 TCGATTGAGATCTAGCCACGC 60.001 52.381 0.00 0.00 0.00 5.34
632 634 1.789506 GATTGAGATCTAGCCACGCC 58.210 55.000 0.00 0.00 0.00 5.68
633 635 0.394565 ATTGAGATCTAGCCACGCCC 59.605 55.000 0.00 0.00 0.00 6.13
634 636 0.687757 TTGAGATCTAGCCACGCCCT 60.688 55.000 0.00 0.00 0.00 5.19
635 637 0.687757 TGAGATCTAGCCACGCCCTT 60.688 55.000 0.00 0.00 0.00 3.95
636 638 0.466124 GAGATCTAGCCACGCCCTTT 59.534 55.000 0.00 0.00 0.00 3.11
637 639 0.912486 AGATCTAGCCACGCCCTTTT 59.088 50.000 0.00 0.00 0.00 2.27
638 640 2.102588 GAGATCTAGCCACGCCCTTTTA 59.897 50.000 0.00 0.00 0.00 1.52
640 642 3.136626 AGATCTAGCCACGCCCTTTTAAT 59.863 43.478 0.00 0.00 0.00 1.40
641 643 3.359695 TCTAGCCACGCCCTTTTAATT 57.640 42.857 0.00 0.00 0.00 1.40
642 644 4.490899 TCTAGCCACGCCCTTTTAATTA 57.509 40.909 0.00 0.00 0.00 1.40
644 646 3.359695 AGCCACGCCCTTTTAATTAGA 57.640 42.857 0.00 0.00 0.00 2.10
646 648 4.083565 AGCCACGCCCTTTTAATTAGAAA 58.916 39.130 0.00 0.00 0.00 2.52
648 650 4.082408 GCCACGCCCTTTTAATTAGAAACT 60.082 41.667 0.00 0.00 0.00 2.66
649 651 5.399013 CCACGCCCTTTTAATTAGAAACTG 58.601 41.667 0.00 0.00 0.00 3.16
650 652 4.857037 CACGCCCTTTTAATTAGAAACTGC 59.143 41.667 0.00 0.00 0.00 4.40
651 653 4.082408 ACGCCCTTTTAATTAGAAACTGCC 60.082 41.667 0.00 0.00 0.00 4.85
652 654 4.082463 CGCCCTTTTAATTAGAAACTGCCA 60.082 41.667 0.00 0.00 0.00 4.92
653 655 5.394115 CGCCCTTTTAATTAGAAACTGCCAT 60.394 40.000 0.00 0.00 0.00 4.40
663 665 6.575162 TTAGAAACTGCCATTCTTTCCTTC 57.425 37.500 1.72 0.00 38.13 3.46
664 666 3.503748 AGAAACTGCCATTCTTTCCTTCG 59.496 43.478 0.00 0.00 33.41 3.79
667 669 0.695924 TGCCATTCTTTCCTTCGGGA 59.304 50.000 0.00 0.00 43.37 5.14
912 2192 0.762461 GATCTCCTCCACCTCCCCTG 60.762 65.000 0.00 0.00 0.00 4.45
957 2237 4.666237 CTTGAAAAATCTCGATTGCCCTC 58.334 43.478 0.00 0.00 0.00 4.30
974 2267 1.618447 TCCCTGCTCCCCCTAAACC 60.618 63.158 0.00 0.00 0.00 3.27
1181 2474 7.979444 TGGTAGAGGAAGAACTGTTTATTTG 57.021 36.000 0.00 0.00 0.00 2.32
1182 2475 7.514721 TGGTAGAGGAAGAACTGTTTATTTGT 58.485 34.615 0.00 0.00 0.00 2.83
1183 2476 7.444183 TGGTAGAGGAAGAACTGTTTATTTGTG 59.556 37.037 0.00 0.00 0.00 3.33
1184 2477 6.884280 AGAGGAAGAACTGTTTATTTGTGG 57.116 37.500 0.00 0.00 0.00 4.17
1185 2478 5.770162 AGAGGAAGAACTGTTTATTTGTGGG 59.230 40.000 0.00 0.00 0.00 4.61
1186 2479 4.832823 AGGAAGAACTGTTTATTTGTGGGG 59.167 41.667 0.00 0.00 0.00 4.96
1187 2480 4.830600 GGAAGAACTGTTTATTTGTGGGGA 59.169 41.667 0.00 0.00 0.00 4.81
1188 2481 5.048013 GGAAGAACTGTTTATTTGTGGGGAG 60.048 44.000 0.00 0.00 0.00 4.30
1189 2482 5.061721 AGAACTGTTTATTTGTGGGGAGT 57.938 39.130 0.00 0.00 0.00 3.85
1190 2483 6.195600 AGAACTGTTTATTTGTGGGGAGTA 57.804 37.500 0.00 0.00 0.00 2.59
1191 2484 6.002082 AGAACTGTTTATTTGTGGGGAGTAC 58.998 40.000 0.00 0.00 0.00 2.73
1192 2485 4.659115 ACTGTTTATTTGTGGGGAGTACC 58.341 43.478 0.00 0.00 39.11 3.34
1193 2486 4.352893 ACTGTTTATTTGTGGGGAGTACCT 59.647 41.667 0.00 0.00 40.03 3.08
1194 2487 5.548836 ACTGTTTATTTGTGGGGAGTACCTA 59.451 40.000 0.00 0.00 40.03 3.08
1195 2488 6.057321 TGTTTATTTGTGGGGAGTACCTAG 57.943 41.667 0.00 0.00 40.03 3.02
1196 2489 5.786457 TGTTTATTTGTGGGGAGTACCTAGA 59.214 40.000 0.00 0.00 40.03 2.43
1197 2490 6.272792 TGTTTATTTGTGGGGAGTACCTAGAA 59.727 38.462 0.00 0.00 40.03 2.10
1198 2491 4.838904 ATTTGTGGGGAGTACCTAGAAC 57.161 45.455 0.00 0.00 40.03 3.01
1199 2492 3.555117 TTGTGGGGAGTACCTAGAACT 57.445 47.619 0.00 0.00 40.03 3.01
1200 2493 3.097342 TGTGGGGAGTACCTAGAACTC 57.903 52.381 13.84 13.84 42.19 3.01
1201 2494 2.380932 TGTGGGGAGTACCTAGAACTCA 59.619 50.000 20.28 4.93 44.25 3.41
1202 2495 3.012502 TGTGGGGAGTACCTAGAACTCAT 59.987 47.826 20.28 0.00 44.25 2.90
1203 2496 3.637694 GTGGGGAGTACCTAGAACTCATC 59.362 52.174 20.28 14.08 44.25 2.92
1204 2497 3.532232 TGGGGAGTACCTAGAACTCATCT 59.468 47.826 20.28 0.00 44.25 2.90
1205 2498 4.730392 TGGGGAGTACCTAGAACTCATCTA 59.270 45.833 20.28 11.04 44.25 1.98
1223 2516 7.348080 TCATCTAGATGAGACGTAATTTGGT 57.652 36.000 27.93 0.00 42.42 3.67
1224 2517 7.426410 TCATCTAGATGAGACGTAATTTGGTC 58.574 38.462 27.93 1.46 42.42 4.02
1225 2518 7.285629 TCATCTAGATGAGACGTAATTTGGTCT 59.714 37.037 27.93 9.96 45.71 3.85
1233 2526 4.935808 AGACGTAATTTGGTCTCATTCACC 59.064 41.667 5.52 0.00 39.18 4.02
1234 2527 4.906618 ACGTAATTTGGTCTCATTCACCT 58.093 39.130 0.00 0.00 34.66 4.00
1235 2528 4.695455 ACGTAATTTGGTCTCATTCACCTG 59.305 41.667 0.00 0.00 34.66 4.00
1236 2529 4.935205 CGTAATTTGGTCTCATTCACCTGA 59.065 41.667 0.00 0.00 34.66 3.86
1237 2530 5.411361 CGTAATTTGGTCTCATTCACCTGAA 59.589 40.000 0.00 0.00 38.56 3.02
1238 2531 6.072728 CGTAATTTGGTCTCATTCACCTGAAA 60.073 38.462 0.00 0.00 37.61 2.69
1239 2532 6.729690 AATTTGGTCTCATTCACCTGAAAA 57.270 33.333 0.00 0.00 37.61 2.29
1240 2533 6.729690 ATTTGGTCTCATTCACCTGAAAAA 57.270 33.333 0.00 0.00 37.61 1.94
1241 2534 5.514274 TTGGTCTCATTCACCTGAAAAAC 57.486 39.130 0.00 0.00 37.61 2.43
1242 2535 4.531854 TGGTCTCATTCACCTGAAAAACA 58.468 39.130 0.00 0.00 37.61 2.83
1243 2536 4.952957 TGGTCTCATTCACCTGAAAAACAA 59.047 37.500 0.00 0.00 37.61 2.83
1244 2537 5.067674 TGGTCTCATTCACCTGAAAAACAAG 59.932 40.000 0.00 0.00 37.61 3.16
1245 2538 5.299279 GGTCTCATTCACCTGAAAAACAAGA 59.701 40.000 0.00 0.00 37.61 3.02
1246 2539 6.183360 GGTCTCATTCACCTGAAAAACAAGAA 60.183 38.462 0.00 0.00 37.61 2.52
1247 2540 7.428826 GTCTCATTCACCTGAAAAACAAGAAT 58.571 34.615 0.00 0.00 37.61 2.40
1248 2541 7.380602 GTCTCATTCACCTGAAAAACAAGAATG 59.619 37.037 0.00 0.00 40.09 2.67
1249 2542 6.514947 TCATTCACCTGAAAAACAAGAATGG 58.485 36.000 0.00 0.00 39.70 3.16
1250 2543 6.323482 TCATTCACCTGAAAAACAAGAATGGA 59.677 34.615 0.00 0.00 39.70 3.41
1251 2544 6.729690 TTCACCTGAAAAACAAGAATGGAT 57.270 33.333 0.00 0.00 0.00 3.41
1252 2545 7.831691 TTCACCTGAAAAACAAGAATGGATA 57.168 32.000 0.00 0.00 0.00 2.59
1253 2546 7.214467 TCACCTGAAAAACAAGAATGGATAC 57.786 36.000 0.00 0.00 0.00 2.24
1269 2562 4.085357 GGATACAACCCATATCAGCACA 57.915 45.455 0.00 0.00 31.69 4.57
1270 2563 3.815401 GGATACAACCCATATCAGCACAC 59.185 47.826 0.00 0.00 31.69 3.82
1271 2564 2.877097 ACAACCCATATCAGCACACA 57.123 45.000 0.00 0.00 0.00 3.72
1272 2565 2.436417 ACAACCCATATCAGCACACAC 58.564 47.619 0.00 0.00 0.00 3.82
1273 2566 1.398041 CAACCCATATCAGCACACACG 59.602 52.381 0.00 0.00 0.00 4.49
1274 2567 0.744414 ACCCATATCAGCACACACGC 60.744 55.000 0.00 0.00 0.00 5.34
1275 2568 0.744057 CCCATATCAGCACACACGCA 60.744 55.000 0.00 0.00 0.00 5.24
1276 2569 1.302366 CCATATCAGCACACACGCAT 58.698 50.000 0.00 0.00 0.00 4.73
1277 2570 1.262417 CCATATCAGCACACACGCATC 59.738 52.381 0.00 0.00 0.00 3.91
1278 2571 2.207590 CATATCAGCACACACGCATCT 58.792 47.619 0.00 0.00 0.00 2.90
1279 2572 2.385013 TATCAGCACACACGCATCTT 57.615 45.000 0.00 0.00 0.00 2.40
1280 2573 2.385013 ATCAGCACACACGCATCTTA 57.615 45.000 0.00 0.00 0.00 2.10
1281 2574 2.385013 TCAGCACACACGCATCTTAT 57.615 45.000 0.00 0.00 0.00 1.73
1282 2575 3.518634 TCAGCACACACGCATCTTATA 57.481 42.857 0.00 0.00 0.00 0.98
1283 2576 3.447742 TCAGCACACACGCATCTTATAG 58.552 45.455 0.00 0.00 0.00 1.31
1284 2577 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
1285 2578 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
1286 2579 2.285834 GCACACACGCATCTTATAGCAC 60.286 50.000 0.00 0.00 0.00 4.40
1287 2580 2.285220 CACACACGCATCTTATAGCACC 59.715 50.000 0.00 0.00 0.00 5.01
1288 2581 2.093711 ACACACGCATCTTATAGCACCA 60.094 45.455 0.00 0.00 0.00 4.17
1289 2582 2.285220 CACACGCATCTTATAGCACCAC 59.715 50.000 0.00 0.00 0.00 4.16
1290 2583 2.093711 ACACGCATCTTATAGCACCACA 60.094 45.455 0.00 0.00 0.00 4.17
1291 2584 3.133691 CACGCATCTTATAGCACCACAT 58.866 45.455 0.00 0.00 0.00 3.21
1292 2585 3.185188 CACGCATCTTATAGCACCACATC 59.815 47.826 0.00 0.00 0.00 3.06
1293 2586 2.738846 CGCATCTTATAGCACCACATCC 59.261 50.000 0.00 0.00 0.00 3.51
1294 2587 3.743521 GCATCTTATAGCACCACATCCA 58.256 45.455 0.00 0.00 0.00 3.41
1295 2588 4.136796 GCATCTTATAGCACCACATCCAA 58.863 43.478 0.00 0.00 0.00 3.53
1296 2589 4.763793 GCATCTTATAGCACCACATCCAAT 59.236 41.667 0.00 0.00 0.00 3.16
1297 2590 5.335426 GCATCTTATAGCACCACATCCAATG 60.335 44.000 0.00 0.00 0.00 2.82
1298 2591 4.717877 TCTTATAGCACCACATCCAATGG 58.282 43.478 0.00 0.00 43.43 3.16
1311 2604 7.780064 CCACATCCAATGGTTATAAAATGTGA 58.220 34.615 21.96 0.00 43.26 3.58
1312 2605 8.256605 CCACATCCAATGGTTATAAAATGTGAA 58.743 33.333 21.96 0.00 43.26 3.18
1313 2606 9.820725 CACATCCAATGGTTATAAAATGTGAAT 57.179 29.630 17.80 0.00 43.26 2.57
1314 2607 9.820725 ACATCCAATGGTTATAAAATGTGAATG 57.179 29.630 0.00 0.00 33.60 2.67
1317 2610 9.473007 TCCAATGGTTATAAAATGTGAATGAGA 57.527 29.630 0.00 0.00 0.00 3.27
1318 2611 9.520204 CCAATGGTTATAAAATGTGAATGAGAC 57.480 33.333 0.00 0.00 0.00 3.36
1319 2612 9.520204 CAATGGTTATAAAATGTGAATGAGACC 57.480 33.333 0.00 0.00 0.00 3.85
1320 2613 8.821686 ATGGTTATAAAATGTGAATGAGACCA 57.178 30.769 0.00 0.00 36.79 4.02
1321 2614 8.642935 TGGTTATAAAATGTGAATGAGACCAA 57.357 30.769 0.00 0.00 30.10 3.67
1322 2615 9.083422 TGGTTATAAAATGTGAATGAGACCAAA 57.917 29.630 0.00 0.00 30.10 3.28
1358 2651 7.897575 CTAGATGAGTTCTAGCAAAACTGTT 57.102 36.000 0.32 0.00 45.63 3.16
1359 2652 8.988064 CTAGATGAGTTCTAGCAAAACTGTTA 57.012 34.615 0.32 0.00 45.63 2.41
1360 2653 9.593134 CTAGATGAGTTCTAGCAAAACTGTTAT 57.407 33.333 0.32 0.00 45.63 1.89
1361 2654 8.854614 AGATGAGTTCTAGCAAAACTGTTATT 57.145 30.769 0.32 0.00 37.10 1.40
1362 2655 9.289782 AGATGAGTTCTAGCAAAACTGTTATTT 57.710 29.630 0.32 0.00 37.10 1.40
1477 2770 0.761802 TGGGCACAAAATTGGGGAAC 59.238 50.000 0.00 0.00 30.51 3.62
1998 3293 8.271458 TGGATAACAATGGACATGTATTGTAGT 58.729 33.333 21.59 15.16 44.32 2.73
2096 3396 2.356695 AGGCACTGTTTCGTTTGGTTAC 59.643 45.455 0.00 0.00 37.18 2.50
2647 3950 0.958822 ACGACATCCAAAAACCTGGC 59.041 50.000 0.00 0.00 36.32 4.85
2804 4110 1.843206 GGCTTCTGATTTCCTCCTCCT 59.157 52.381 0.00 0.00 0.00 3.69
2805 4111 2.158827 GGCTTCTGATTTCCTCCTCCTC 60.159 54.545 0.00 0.00 0.00 3.71
2806 4112 2.158827 GCTTCTGATTTCCTCCTCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
2854 4160 2.722094 TGGTAAATTGCTGCTACCCTG 58.278 47.619 11.81 0.00 35.22 4.45
3032 4343 7.538334 TGACGCTTTTCAGAAATGATGTATTTG 59.462 33.333 12.00 0.00 39.06 2.32
3094 4405 2.289565 GCTGCAATCTAGGTTGTACCC 58.710 52.381 16.94 1.15 39.75 3.69
3379 4697 8.310406 TGATGTCTAATTCAAACATATAGGCG 57.690 34.615 1.52 0.00 33.91 5.52
3547 4865 2.680312 TGACACTTAGAGATGCTGCC 57.320 50.000 0.00 0.00 0.00 4.85
3554 4872 0.755327 TAGAGATGCTGCCCGTGCTA 60.755 55.000 0.00 0.00 38.71 3.49
3840 5158 2.290122 CTGACGCTGCCTCTACCCAG 62.290 65.000 0.00 0.00 0.00 4.45
4223 5541 5.186992 ACCACTTTTTACTTTGCAGGTTTCT 59.813 36.000 0.00 0.00 0.00 2.52
4256 5574 1.304713 CTTGGGGGCTCACTGCAAT 60.305 57.895 0.00 0.00 45.15 3.56
4264 5582 2.224018 GGGCTCACTGCAATTGAAAACA 60.224 45.455 10.34 0.00 45.15 2.83
4425 5743 1.005037 TTGCTATGCCCGGCGATAG 60.005 57.895 9.30 17.78 0.00 2.08
4426 5744 1.468506 TTGCTATGCCCGGCGATAGA 61.469 55.000 22.78 11.59 39.76 1.98
4427 5745 1.292223 GCTATGCCCGGCGATAGAA 59.708 57.895 22.78 1.05 39.76 2.10
4428 5746 0.737715 GCTATGCCCGGCGATAGAAG 60.738 60.000 22.78 0.89 39.76 2.85
4429 5747 0.603569 CTATGCCCGGCGATAGAAGT 59.396 55.000 9.30 0.00 39.76 3.01
4641 5964 9.989869 GGAGAATTTTGTATTAGCTGTAAGTTC 57.010 33.333 0.00 0.00 35.30 3.01
4660 5983 9.449719 GTAAGTTCTTTCATCCTTCCTTCATAA 57.550 33.333 0.00 0.00 0.00 1.90
4661 5984 8.572855 AAGTTCTTTCATCCTTCCTTCATAAG 57.427 34.615 0.00 0.00 0.00 1.73
4662 5985 7.694093 AGTTCTTTCATCCTTCCTTCATAAGT 58.306 34.615 0.00 0.00 0.00 2.24
4663 5986 8.826765 AGTTCTTTCATCCTTCCTTCATAAGTA 58.173 33.333 0.00 0.00 0.00 2.24
4664 5987 8.884726 GTTCTTTCATCCTTCCTTCATAAGTAC 58.115 37.037 0.00 0.00 0.00 2.73
4665 5988 8.380742 TCTTTCATCCTTCCTTCATAAGTACT 57.619 34.615 0.00 0.00 0.00 2.73
4666 5989 8.478877 TCTTTCATCCTTCCTTCATAAGTACTC 58.521 37.037 0.00 0.00 0.00 2.59
4667 5990 6.732896 TCATCCTTCCTTCATAAGTACTCC 57.267 41.667 0.00 0.00 0.00 3.85
4668 5991 5.602978 TCATCCTTCCTTCATAAGTACTCCC 59.397 44.000 0.00 0.00 0.00 4.30
4669 5992 5.222278 TCCTTCCTTCATAAGTACTCCCT 57.778 43.478 0.00 0.00 0.00 4.20
4670 5993 5.209659 TCCTTCCTTCATAAGTACTCCCTC 58.790 45.833 0.00 0.00 0.00 4.30
4671 5994 4.345547 CCTTCCTTCATAAGTACTCCCTCC 59.654 50.000 0.00 0.00 0.00 4.30
4672 5995 3.563223 TCCTTCATAAGTACTCCCTCCG 58.437 50.000 0.00 0.00 0.00 4.63
4673 5996 3.053095 TCCTTCATAAGTACTCCCTCCGT 60.053 47.826 0.00 0.00 0.00 4.69
4674 5997 3.318557 CCTTCATAAGTACTCCCTCCGTC 59.681 52.174 0.00 0.00 0.00 4.79
4675 5998 2.941480 TCATAAGTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
4676 5999 1.962100 CATAAGTACTCCCTCCGTCCC 59.038 57.143 0.00 0.00 0.00 4.46
4677 6000 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
4678 6001 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
4679 6002 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4680 6003 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4681 6004 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4682 6005 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4683 6006 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4684 6007 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4685 6008 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4686 6009 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4687 6010 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4688 6011 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4689 6012 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4690 6013 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4691 6014 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4692 6015 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
4693 6016 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
4694 6017 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
4695 6018 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
4696 6019 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
4697 6020 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
4698 6021 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
4699 6022 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
4700 6023 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
4719 6042 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
4720 6043 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
4721 6044 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
4722 6045 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
4723 6046 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
4724 6047 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
4725 6048 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
4726 6049 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
4727 6050 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
4728 6051 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
4729 6052 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
4730 6053 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
4731 6054 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
4732 6055 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
4733 6056 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
4779 6102 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
4780 6103 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
4781 6104 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
4782 6105 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
4783 6106 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
4784 6107 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
4962 6285 2.294233 GACAATCACTGGCTTTTGCTCA 59.706 45.455 0.00 0.00 46.54 4.26
5314 6643 6.959361 ACTTTAGTAAGACAACTGCACATTG 58.041 36.000 4.70 4.70 35.30 2.82
5346 6675 5.092554 TCTGATGCTCAATTTTACCCGTA 57.907 39.130 0.00 0.00 0.00 4.02
5405 6734 0.401738 CTGCCCCTTGAAGAAGGTGA 59.598 55.000 0.00 0.00 46.84 4.02
5456 6785 2.301346 CTGTTCTTTGCAGGTGGTTCT 58.699 47.619 0.00 0.00 0.00 3.01
5458 6787 2.297701 GTTCTTTGCAGGTGGTTCTGA 58.702 47.619 0.00 0.00 36.93 3.27
5471 6800 1.956477 GGTTCTGACATTTGTGGCTGT 59.044 47.619 0.00 0.00 0.00 4.40
5502 6831 9.243105 TCCTCCTTTTTATTTAGTGAATGAAGG 57.757 33.333 10.48 10.48 36.26 3.46
5624 6953 8.818622 TGAATCTGAGGATGATTTTTCTTCAT 57.181 30.769 0.00 0.00 36.54 2.57
5679 7008 2.743664 CTCGTCTGGTGCATCAAAATCA 59.256 45.455 0.00 0.00 0.00 2.57
5687 7016 7.280876 GTCTGGTGCATCAAAATCAGACTATTA 59.719 37.037 0.00 0.00 44.28 0.98
5803 7133 2.770130 GGGATGCCAGAAACCCCA 59.230 61.111 0.00 0.00 37.04 4.96
5804 7134 1.380380 GGGATGCCAGAAACCCCAG 60.380 63.158 0.00 0.00 37.04 4.45
5805 7135 2.054453 GGATGCCAGAAACCCCAGC 61.054 63.158 0.00 0.00 0.00 4.85
5806 7136 1.304381 GATGCCAGAAACCCCAGCA 60.304 57.895 0.00 0.00 37.94 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 144 5.664294 TTGTGGCTGCAATATGAATCTTT 57.336 34.783 0.50 0.00 0.00 2.52
249 251 9.969001 AATTAAGTTTAGTCCCATACTGCTAAA 57.031 29.630 0.00 0.00 39.39 1.85
278 280 0.524862 GCTGCTGCTAAGTGTTGCAT 59.475 50.000 8.53 0.00 38.59 3.96
356 358 5.189342 TCCAGGCTAGATATAGTAGTAGCGT 59.811 44.000 0.00 0.00 39.06 5.07
511 513 7.557719 ACCTTATACACAGAATTTTAGCAGCAT 59.442 33.333 0.00 0.00 0.00 3.79
554 556 2.432510 AGGGGCTAATCGAAGAGACAAG 59.567 50.000 5.25 0.00 43.63 3.16
555 557 2.431057 GAGGGGCTAATCGAAGAGACAA 59.569 50.000 5.25 0.00 43.63 3.18
557 559 1.001158 CGAGGGGCTAATCGAAGAGAC 60.001 57.143 0.00 0.00 43.63 3.36
558 560 1.133884 TCGAGGGGCTAATCGAAGAGA 60.134 52.381 6.74 0.00 44.36 3.10
559 561 1.319541 TCGAGGGGCTAATCGAAGAG 58.680 55.000 6.74 0.00 44.36 2.85
560 562 3.507675 TCGAGGGGCTAATCGAAGA 57.492 52.632 6.74 0.00 44.36 2.87
564 566 0.389166 GCTGATCGAGGGGCTAATCG 60.389 60.000 0.00 1.12 40.26 3.34
565 567 0.036858 GGCTGATCGAGGGGCTAATC 60.037 60.000 0.00 0.00 0.00 1.75
566 568 1.484444 GGGCTGATCGAGGGGCTAAT 61.484 60.000 0.00 0.00 0.00 1.73
567 569 2.140792 GGGCTGATCGAGGGGCTAA 61.141 63.158 0.00 0.00 0.00 3.09
568 570 2.524394 GGGCTGATCGAGGGGCTA 60.524 66.667 0.00 0.00 0.00 3.93
569 571 4.488911 AGGGCTGATCGAGGGGCT 62.489 66.667 0.00 0.00 0.00 5.19
570 572 3.934962 GAGGGCTGATCGAGGGGC 61.935 72.222 0.00 0.00 0.00 5.80
571 573 2.444706 TGAGGGCTGATCGAGGGG 60.445 66.667 0.00 0.00 0.00 4.79
572 574 0.468214 TAGTGAGGGCTGATCGAGGG 60.468 60.000 0.00 0.00 0.00 4.30
573 575 1.339610 CTTAGTGAGGGCTGATCGAGG 59.660 57.143 0.00 0.00 0.00 4.63
574 576 2.034053 GTCTTAGTGAGGGCTGATCGAG 59.966 54.545 0.00 0.00 0.00 4.04
575 577 2.025155 GTCTTAGTGAGGGCTGATCGA 58.975 52.381 0.00 0.00 0.00 3.59
576 578 2.028130 AGTCTTAGTGAGGGCTGATCG 58.972 52.381 0.00 0.00 0.00 3.69
577 579 3.431486 CCAAGTCTTAGTGAGGGCTGATC 60.431 52.174 0.00 0.00 0.00 2.92
578 580 2.503356 CCAAGTCTTAGTGAGGGCTGAT 59.497 50.000 0.00 0.00 0.00 2.90
579 581 1.902508 CCAAGTCTTAGTGAGGGCTGA 59.097 52.381 0.00 0.00 0.00 4.26
580 582 1.625818 ACCAAGTCTTAGTGAGGGCTG 59.374 52.381 0.00 0.00 0.00 4.85
581 583 2.031495 ACCAAGTCTTAGTGAGGGCT 57.969 50.000 0.00 0.00 0.00 5.19
582 584 2.861147 AACCAAGTCTTAGTGAGGGC 57.139 50.000 0.00 0.00 0.00 5.19
583 585 7.447238 TGAAATTTAACCAAGTCTTAGTGAGGG 59.553 37.037 0.00 0.00 0.00 4.30
584 586 8.391075 TGAAATTTAACCAAGTCTTAGTGAGG 57.609 34.615 0.00 0.00 0.00 3.86
585 587 9.057089 ACTGAAATTTAACCAAGTCTTAGTGAG 57.943 33.333 0.00 0.00 0.00 3.51
586 588 8.974060 ACTGAAATTTAACCAAGTCTTAGTGA 57.026 30.769 0.00 0.00 0.00 3.41
587 589 8.009974 CGACTGAAATTTAACCAAGTCTTAGTG 58.990 37.037 0.00 0.00 0.00 2.74
588 590 7.929785 TCGACTGAAATTTAACCAAGTCTTAGT 59.070 33.333 0.00 0.00 0.00 2.24
589 591 8.306680 TCGACTGAAATTTAACCAAGTCTTAG 57.693 34.615 0.00 0.00 0.00 2.18
590 592 8.842358 ATCGACTGAAATTTAACCAAGTCTTA 57.158 30.769 0.00 0.00 0.00 2.10
591 593 7.745620 ATCGACTGAAATTTAACCAAGTCTT 57.254 32.000 0.00 0.00 0.00 3.01
624 626 3.359695 TCTAATTAAAAGGGCGTGGCT 57.640 42.857 0.00 0.00 0.00 4.75
625 627 4.082408 AGTTTCTAATTAAAAGGGCGTGGC 60.082 41.667 0.00 0.00 0.00 5.01
626 628 5.399013 CAGTTTCTAATTAAAAGGGCGTGG 58.601 41.667 0.00 0.00 0.00 4.94
627 629 4.857037 GCAGTTTCTAATTAAAAGGGCGTG 59.143 41.667 0.00 0.00 0.00 5.34
628 630 4.082408 GGCAGTTTCTAATTAAAAGGGCGT 60.082 41.667 0.00 0.00 0.00 5.68
630 632 5.400066 TGGCAGTTTCTAATTAAAAGGGC 57.600 39.130 0.00 0.00 0.00 5.19
631 633 7.840931 AGAATGGCAGTTTCTAATTAAAAGGG 58.159 34.615 1.56 0.00 31.75 3.95
632 634 9.710900 AAAGAATGGCAGTTTCTAATTAAAAGG 57.289 29.630 3.90 0.00 33.17 3.11
634 636 9.705290 GGAAAGAATGGCAGTTTCTAATTAAAA 57.295 29.630 15.34 0.00 33.17 1.52
635 637 9.088987 AGGAAAGAATGGCAGTTTCTAATTAAA 57.911 29.630 15.34 0.00 33.17 1.52
636 638 8.650143 AGGAAAGAATGGCAGTTTCTAATTAA 57.350 30.769 15.34 0.00 33.17 1.40
637 639 8.650143 AAGGAAAGAATGGCAGTTTCTAATTA 57.350 30.769 15.34 0.00 33.17 1.40
638 640 7.544804 AAGGAAAGAATGGCAGTTTCTAATT 57.455 32.000 15.34 4.35 33.17 1.40
640 642 5.181245 CGAAGGAAAGAATGGCAGTTTCTAA 59.819 40.000 15.34 0.00 33.17 2.10
641 643 4.695455 CGAAGGAAAGAATGGCAGTTTCTA 59.305 41.667 15.34 0.00 33.17 2.10
642 644 3.503748 CGAAGGAAAGAATGGCAGTTTCT 59.496 43.478 15.34 8.23 34.95 2.52
644 646 3.923017 CGAAGGAAAGAATGGCAGTTT 57.077 42.857 0.00 0.00 0.00 2.66
706 1943 1.135094 AGGGTCGCATGATCTCCATT 58.865 50.000 0.00 0.00 31.94 3.16
957 2237 1.619669 AGGTTTAGGGGGAGCAGGG 60.620 63.158 0.00 0.00 0.00 4.45
1146 2439 7.286775 AGTTCTTCCTCTACCAACAGATCTATC 59.713 40.741 0.00 0.00 0.00 2.08
1181 2474 3.097342 TGAGTTCTAGGTACTCCCCAC 57.903 52.381 17.72 1.24 41.02 4.61
1182 2475 3.532232 AGATGAGTTCTAGGTACTCCCCA 59.468 47.826 17.72 6.09 41.02 4.96
1183 2476 4.187506 AGATGAGTTCTAGGTACTCCCC 57.812 50.000 17.72 11.81 41.02 4.81
1184 2477 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
1185 2478 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
1199 2492 7.285629 AGACCAAATTACGTCTCATCTAGATGA 59.714 37.037 29.17 29.17 42.99 2.92
1200 2493 7.429633 AGACCAAATTACGTCTCATCTAGATG 58.570 38.462 24.32 24.32 45.40 2.90
1201 2494 7.589958 AGACCAAATTACGTCTCATCTAGAT 57.410 36.000 0.00 0.00 34.15 1.98
1210 2503 4.935808 GGTGAATGAGACCAAATTACGTCT 59.064 41.667 6.98 6.98 42.02 4.18
1211 2504 4.935808 AGGTGAATGAGACCAAATTACGTC 59.064 41.667 0.00 0.00 35.76 4.34
1212 2505 4.695455 CAGGTGAATGAGACCAAATTACGT 59.305 41.667 0.00 0.00 35.76 3.57
1213 2506 4.935205 TCAGGTGAATGAGACCAAATTACG 59.065 41.667 0.00 0.00 35.76 3.18
1214 2507 6.817765 TTCAGGTGAATGAGACCAAATTAC 57.182 37.500 0.00 0.00 35.76 1.89
1215 2508 7.831691 TTTTCAGGTGAATGAGACCAAATTA 57.168 32.000 0.00 0.00 35.76 1.40
1216 2509 6.729690 TTTTCAGGTGAATGAGACCAAATT 57.270 33.333 0.00 0.00 35.76 1.82
1217 2510 6.098124 TGTTTTTCAGGTGAATGAGACCAAAT 59.902 34.615 0.00 0.00 35.76 2.32
1218 2511 5.420421 TGTTTTTCAGGTGAATGAGACCAAA 59.580 36.000 0.00 0.00 35.76 3.28
1219 2512 4.952957 TGTTTTTCAGGTGAATGAGACCAA 59.047 37.500 0.00 0.00 35.76 3.67
1220 2513 4.531854 TGTTTTTCAGGTGAATGAGACCA 58.468 39.130 0.00 0.00 35.76 4.02
1221 2514 5.299279 TCTTGTTTTTCAGGTGAATGAGACC 59.701 40.000 0.00 0.00 33.54 3.85
1222 2515 6.377327 TCTTGTTTTTCAGGTGAATGAGAC 57.623 37.500 0.00 0.00 33.54 3.36
1223 2516 7.428020 CATTCTTGTTTTTCAGGTGAATGAGA 58.572 34.615 0.00 0.00 39.44 3.27
1224 2517 6.643770 CCATTCTTGTTTTTCAGGTGAATGAG 59.356 38.462 12.52 2.29 39.44 2.90
1225 2518 6.323482 TCCATTCTTGTTTTTCAGGTGAATGA 59.677 34.615 12.52 0.02 39.44 2.57
1226 2519 6.514947 TCCATTCTTGTTTTTCAGGTGAATG 58.485 36.000 0.00 0.00 38.36 2.67
1227 2520 6.729690 TCCATTCTTGTTTTTCAGGTGAAT 57.270 33.333 0.00 0.00 33.54 2.57
1228 2521 6.729690 ATCCATTCTTGTTTTTCAGGTGAA 57.270 33.333 0.00 0.00 0.00 3.18
1229 2522 6.775142 TGTATCCATTCTTGTTTTTCAGGTGA 59.225 34.615 0.00 0.00 0.00 4.02
1230 2523 6.980593 TGTATCCATTCTTGTTTTTCAGGTG 58.019 36.000 0.00 0.00 0.00 4.00
1231 2524 7.433680 GTTGTATCCATTCTTGTTTTTCAGGT 58.566 34.615 0.00 0.00 0.00 4.00
1232 2525 6.868339 GGTTGTATCCATTCTTGTTTTTCAGG 59.132 38.462 0.00 0.00 0.00 3.86
1233 2526 6.868339 GGGTTGTATCCATTCTTGTTTTTCAG 59.132 38.462 0.00 0.00 0.00 3.02
1234 2527 6.325028 TGGGTTGTATCCATTCTTGTTTTTCA 59.675 34.615 0.00 0.00 0.00 2.69
1235 2528 6.754193 TGGGTTGTATCCATTCTTGTTTTTC 58.246 36.000 0.00 0.00 0.00 2.29
1236 2529 6.739331 TGGGTTGTATCCATTCTTGTTTTT 57.261 33.333 0.00 0.00 0.00 1.94
1237 2530 6.933514 ATGGGTTGTATCCATTCTTGTTTT 57.066 33.333 0.00 0.00 41.87 2.43
1238 2531 7.838696 TGATATGGGTTGTATCCATTCTTGTTT 59.161 33.333 0.00 0.00 41.87 2.83
1239 2532 7.353525 TGATATGGGTTGTATCCATTCTTGTT 58.646 34.615 0.00 0.00 41.87 2.83
1240 2533 6.910191 TGATATGGGTTGTATCCATTCTTGT 58.090 36.000 0.00 0.00 41.87 3.16
1241 2534 6.072286 GCTGATATGGGTTGTATCCATTCTTG 60.072 42.308 0.00 0.00 41.87 3.02
1242 2535 6.006449 GCTGATATGGGTTGTATCCATTCTT 58.994 40.000 0.00 0.00 41.87 2.52
1243 2536 5.073554 TGCTGATATGGGTTGTATCCATTCT 59.926 40.000 0.00 0.00 41.87 2.40
1244 2537 5.182001 GTGCTGATATGGGTTGTATCCATTC 59.818 44.000 0.00 0.00 41.87 2.67
1245 2538 5.072741 GTGCTGATATGGGTTGTATCCATT 58.927 41.667 0.00 0.00 41.87 3.16
1246 2539 4.104579 TGTGCTGATATGGGTTGTATCCAT 59.895 41.667 0.00 0.00 45.93 3.41
1247 2540 3.457749 TGTGCTGATATGGGTTGTATCCA 59.542 43.478 0.00 0.00 38.82 3.41
1248 2541 3.815401 GTGTGCTGATATGGGTTGTATCC 59.185 47.826 0.00 0.00 0.00 2.59
1249 2542 4.273480 GTGTGTGCTGATATGGGTTGTATC 59.727 45.833 0.00 0.00 0.00 2.24
1250 2543 4.199310 GTGTGTGCTGATATGGGTTGTAT 58.801 43.478 0.00 0.00 0.00 2.29
1251 2544 3.605634 GTGTGTGCTGATATGGGTTGTA 58.394 45.455 0.00 0.00 0.00 2.41
1252 2545 2.436417 GTGTGTGCTGATATGGGTTGT 58.564 47.619 0.00 0.00 0.00 3.32
1253 2546 1.398041 CGTGTGTGCTGATATGGGTTG 59.602 52.381 0.00 0.00 0.00 3.77
1254 2547 1.737838 CGTGTGTGCTGATATGGGTT 58.262 50.000 0.00 0.00 0.00 4.11
1255 2548 0.744414 GCGTGTGTGCTGATATGGGT 60.744 55.000 0.00 0.00 0.00 4.51
1256 2549 0.744057 TGCGTGTGTGCTGATATGGG 60.744 55.000 0.00 0.00 35.36 4.00
1257 2550 1.262417 GATGCGTGTGTGCTGATATGG 59.738 52.381 0.00 0.00 35.36 2.74
1258 2551 2.207590 AGATGCGTGTGTGCTGATATG 58.792 47.619 0.00 0.00 35.36 1.78
1259 2552 2.609427 AGATGCGTGTGTGCTGATAT 57.391 45.000 0.00 0.00 35.36 1.63
1260 2553 2.385013 AAGATGCGTGTGTGCTGATA 57.615 45.000 0.00 0.00 35.36 2.15
1261 2554 2.385013 TAAGATGCGTGTGTGCTGAT 57.615 45.000 0.00 0.00 35.36 2.90
1262 2555 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
1263 2556 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
1264 2557 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
1265 2558 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
1266 2559 2.285220 GGTGCTATAAGATGCGTGTGTG 59.715 50.000 0.00 0.00 0.00 3.82
1267 2560 2.093711 TGGTGCTATAAGATGCGTGTGT 60.094 45.455 0.00 0.00 0.00 3.72
1268 2561 2.285220 GTGGTGCTATAAGATGCGTGTG 59.715 50.000 0.00 0.00 0.00 3.82
1269 2562 2.093711 TGTGGTGCTATAAGATGCGTGT 60.094 45.455 0.00 0.00 0.00 4.49
1270 2563 2.549926 TGTGGTGCTATAAGATGCGTG 58.450 47.619 0.00 0.00 0.00 5.34
1271 2564 2.979814 TGTGGTGCTATAAGATGCGT 57.020 45.000 0.00 0.00 0.00 5.24
1272 2565 2.738846 GGATGTGGTGCTATAAGATGCG 59.261 50.000 0.00 0.00 0.00 4.73
1273 2566 3.743521 TGGATGTGGTGCTATAAGATGC 58.256 45.455 0.00 0.00 0.00 3.91
1274 2567 5.182570 CCATTGGATGTGGTGCTATAAGATG 59.817 44.000 0.00 0.00 31.96 2.90
1275 2568 5.319453 CCATTGGATGTGGTGCTATAAGAT 58.681 41.667 0.00 0.00 31.96 2.40
1276 2569 4.717877 CCATTGGATGTGGTGCTATAAGA 58.282 43.478 0.00 0.00 31.96 2.10
1286 2579 7.780064 TCACATTTTATAACCATTGGATGTGG 58.220 34.615 21.75 10.50 41.88 4.17
1287 2580 9.820725 ATTCACATTTTATAACCATTGGATGTG 57.179 29.630 18.49 18.49 42.55 3.21
1288 2581 9.820725 CATTCACATTTTATAACCATTGGATGT 57.179 29.630 10.37 3.94 0.00 3.06
1291 2584 9.473007 TCTCATTCACATTTTATAACCATTGGA 57.527 29.630 10.37 0.00 0.00 3.53
1292 2585 9.520204 GTCTCATTCACATTTTATAACCATTGG 57.480 33.333 0.00 0.00 0.00 3.16
1293 2586 9.520204 GGTCTCATTCACATTTTATAACCATTG 57.480 33.333 0.00 0.00 0.00 2.82
1294 2587 9.253832 TGGTCTCATTCACATTTTATAACCATT 57.746 29.630 0.00 0.00 0.00 3.16
1295 2588 8.821686 TGGTCTCATTCACATTTTATAACCAT 57.178 30.769 0.00 0.00 0.00 3.55
1296 2589 8.642935 TTGGTCTCATTCACATTTTATAACCA 57.357 30.769 0.00 0.00 0.00 3.67
1306 2599 9.246670 TGAGATTTAATTTGGTCTCATTCACAT 57.753 29.630 10.50 0.00 41.40 3.21
1307 2600 8.634335 TGAGATTTAATTTGGTCTCATTCACA 57.366 30.769 10.50 0.00 41.40 3.58
1335 2628 9.944376 AATAACAGTTTTGCTAGAACTCATCTA 57.056 29.630 0.00 0.00 39.71 1.98
1336 2629 8.854614 AATAACAGTTTTGCTAGAACTCATCT 57.145 30.769 0.00 0.00 42.48 2.90
1337 2630 9.334693 CAAATAACAGTTTTGCTAGAACTCATC 57.665 33.333 0.00 0.00 35.26 2.92
1338 2631 8.850156 ACAAATAACAGTTTTGCTAGAACTCAT 58.150 29.630 0.00 0.00 37.54 2.90
1339 2632 8.128582 CACAAATAACAGTTTTGCTAGAACTCA 58.871 33.333 0.00 0.00 37.54 3.41
1340 2633 8.129211 ACACAAATAACAGTTTTGCTAGAACTC 58.871 33.333 0.00 0.00 37.54 3.01
1341 2634 7.915397 CACACAAATAACAGTTTTGCTAGAACT 59.085 33.333 0.00 0.00 37.54 3.01
1342 2635 7.700656 ACACACAAATAACAGTTTTGCTAGAAC 59.299 33.333 0.00 0.00 37.54 3.01
1343 2636 7.700234 CACACACAAATAACAGTTTTGCTAGAA 59.300 33.333 0.00 0.00 37.54 2.10
1344 2637 7.148154 ACACACACAAATAACAGTTTTGCTAGA 60.148 33.333 0.00 0.00 37.54 2.43
1345 2638 6.972328 ACACACACAAATAACAGTTTTGCTAG 59.028 34.615 0.00 0.00 37.54 3.42
1346 2639 6.749578 CACACACACAAATAACAGTTTTGCTA 59.250 34.615 0.00 0.00 37.54 3.49
1347 2640 5.576384 CACACACACAAATAACAGTTTTGCT 59.424 36.000 0.00 0.00 37.54 3.91
1348 2641 5.220378 CCACACACACAAATAACAGTTTTGC 60.220 40.000 0.00 0.00 37.54 3.68
1349 2642 5.220378 GCCACACACACAAATAACAGTTTTG 60.220 40.000 0.00 0.00 39.43 2.44
1350 2643 4.867608 GCCACACACACAAATAACAGTTTT 59.132 37.500 0.00 0.00 0.00 2.43
1351 2644 4.081972 TGCCACACACACAAATAACAGTTT 60.082 37.500 0.00 0.00 0.00 2.66
1352 2645 3.445450 TGCCACACACACAAATAACAGTT 59.555 39.130 0.00 0.00 0.00 3.16
1353 2646 3.020274 TGCCACACACACAAATAACAGT 58.980 40.909 0.00 0.00 0.00 3.55
1354 2647 3.631144 CTGCCACACACACAAATAACAG 58.369 45.455 0.00 0.00 0.00 3.16
1355 2648 2.223688 GCTGCCACACACACAAATAACA 60.224 45.455 0.00 0.00 0.00 2.41
1356 2649 2.223688 TGCTGCCACACACACAAATAAC 60.224 45.455 0.00 0.00 0.00 1.89
1357 2650 2.027385 TGCTGCCACACACACAAATAA 58.973 42.857 0.00 0.00 0.00 1.40
1358 2651 1.685148 TGCTGCCACACACACAAATA 58.315 45.000 0.00 0.00 0.00 1.40
1359 2652 1.042229 ATGCTGCCACACACACAAAT 58.958 45.000 0.00 0.00 0.00 2.32
1360 2653 1.608109 CTATGCTGCCACACACACAAA 59.392 47.619 0.00 0.00 0.00 2.83
1361 2654 1.237533 CTATGCTGCCACACACACAA 58.762 50.000 0.00 0.00 0.00 3.33
1362 2655 0.606130 CCTATGCTGCCACACACACA 60.606 55.000 0.00 0.00 0.00 3.72
1477 2770 2.616376 TGGTGTCCAGTTTTCGTTCATG 59.384 45.455 0.00 0.00 0.00 3.07
1998 3293 3.500680 GGAACGAAACATACCAAGAAGCA 59.499 43.478 0.00 0.00 0.00 3.91
2096 3396 4.392921 AGTACACATGCCTACAGCTTAG 57.607 45.455 0.00 0.00 44.23 2.18
2372 3674 4.752101 ACAGTTGATTTCCTCTCAAACTCG 59.248 41.667 0.00 0.00 34.59 4.18
2566 3868 0.890683 GCTTGCACCATAGCCAAACT 59.109 50.000 0.00 0.00 0.00 2.66
2647 3950 7.148137 GGTGTTTTCTTGGGTATAACATAGGTG 60.148 40.741 0.00 0.00 32.10 4.00
2804 4110 6.749036 AAAGTTCAGTTAGAGAGAAAGGGA 57.251 37.500 0.00 0.00 0.00 4.20
2805 4111 8.940952 CATAAAAGTTCAGTTAGAGAGAAAGGG 58.059 37.037 0.00 0.00 0.00 3.95
2806 4112 9.495572 ACATAAAAGTTCAGTTAGAGAGAAAGG 57.504 33.333 0.00 0.00 0.00 3.11
2854 4160 1.458639 AAGCAAGAACCAGCAGCCAC 61.459 55.000 0.00 0.00 0.00 5.01
3232 4543 4.380655 CCTCAGGAAGGTAACGAAGTACAG 60.381 50.000 0.00 0.00 39.66 2.74
3233 4544 3.508793 CCTCAGGAAGGTAACGAAGTACA 59.491 47.826 0.00 0.00 39.66 2.90
3234 4545 4.107363 CCTCAGGAAGGTAACGAAGTAC 57.893 50.000 0.00 0.00 39.66 2.73
3379 4697 7.229506 CCCTAAGAATAAATGGTGATTCAGTCC 59.770 40.741 0.00 0.00 35.00 3.85
3569 4887 1.453155 ATCCAGTTGTGTCGGAATGC 58.547 50.000 0.00 0.00 31.18 3.56
4223 5541 3.010138 CCCCCAAGTGAGATTTGACCTAA 59.990 47.826 0.00 0.00 0.00 2.69
4426 5744 8.893727 GCATTCCAATGTATCACTACTTTACTT 58.106 33.333 1.37 0.00 38.65 2.24
4427 5745 8.046708 TGCATTCCAATGTATCACTACTTTACT 58.953 33.333 1.37 0.00 38.65 2.24
4428 5746 8.208718 TGCATTCCAATGTATCACTACTTTAC 57.791 34.615 1.37 0.00 38.65 2.01
4429 5747 8.800370 TTGCATTCCAATGTATCACTACTTTA 57.200 30.769 1.37 0.00 38.65 1.85
4595 5918 2.094854 CCAAGCAAGGAGAAGCATCAAC 60.095 50.000 0.00 0.00 0.00 3.18
4597 5920 1.352017 TCCAAGCAAGGAGAAGCATCA 59.648 47.619 0.00 0.00 32.77 3.07
4641 5964 7.713073 GGAGTACTTATGAAGGAAGGATGAAAG 59.287 40.741 0.00 0.00 0.00 2.62
4660 5983 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
4661 5984 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
4662 5985 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4663 5986 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
4664 5987 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4665 5988 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
4666 5989 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4667 5990 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4668 5991 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4669 5992 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4670 5993 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
4671 5994 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
4672 5995 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
4673 5996 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
4674 5997 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
4693 6016 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
4694 6017 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
4695 6018 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
4696 6019 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
4697 6020 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
4698 6021 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
4699 6022 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
4700 6023 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
4701 6024 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
4702 6025 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
4703 6026 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
4704 6027 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
4705 6028 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
4706 6029 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
4707 6030 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
4753 6076 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
4754 6077 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
4755 6078 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
4756 6079 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
4757 6080 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
4758 6081 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
4759 6082 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
4760 6083 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
4761 6084 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
4762 6085 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
4763 6086 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
4764 6087 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
4765 6088 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
4766 6089 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
4767 6090 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
4768 6091 5.437191 AATACTCCCTCCGTCTCAAAATT 57.563 39.130 0.00 0.00 0.00 1.82
4769 6092 5.186198 CAAATACTCCCTCCGTCTCAAAAT 58.814 41.667 0.00 0.00 0.00 1.82
4770 6093 4.564821 CCAAATACTCCCTCCGTCTCAAAA 60.565 45.833 0.00 0.00 0.00 2.44
4771 6094 3.055385 CCAAATACTCCCTCCGTCTCAAA 60.055 47.826 0.00 0.00 0.00 2.69
4772 6095 2.500098 CCAAATACTCCCTCCGTCTCAA 59.500 50.000 0.00 0.00 0.00 3.02
4773 6096 2.108168 CCAAATACTCCCTCCGTCTCA 58.892 52.381 0.00 0.00 0.00 3.27
4774 6097 2.108970 ACCAAATACTCCCTCCGTCTC 58.891 52.381 0.00 0.00 0.00 3.36
4775 6098 2.249309 ACCAAATACTCCCTCCGTCT 57.751 50.000 0.00 0.00 0.00 4.18
4776 6099 3.896272 AGATACCAAATACTCCCTCCGTC 59.104 47.826 0.00 0.00 0.00 4.79
4777 6100 3.924922 AGATACCAAATACTCCCTCCGT 58.075 45.455 0.00 0.00 0.00 4.69
4778 6101 4.503296 CCAAGATACCAAATACTCCCTCCG 60.503 50.000 0.00 0.00 0.00 4.63
4779 6102 4.412528 ACCAAGATACCAAATACTCCCTCC 59.587 45.833 0.00 0.00 0.00 4.30
4780 6103 5.632034 ACCAAGATACCAAATACTCCCTC 57.368 43.478 0.00 0.00 0.00 4.30
4781 6104 6.217693 AGAAACCAAGATACCAAATACTCCCT 59.782 38.462 0.00 0.00 0.00 4.20
4782 6105 6.424032 AGAAACCAAGATACCAAATACTCCC 58.576 40.000 0.00 0.00 0.00 4.30
4783 6106 7.281100 CAGAGAAACCAAGATACCAAATACTCC 59.719 40.741 0.00 0.00 0.00 3.85
4784 6107 7.281100 CCAGAGAAACCAAGATACCAAATACTC 59.719 40.741 0.00 0.00 0.00 2.59
4925 6248 2.245159 TGTCACACTCTTGAGCTTGG 57.755 50.000 0.00 0.00 0.00 3.61
5346 6675 1.547372 GTTGGAAGCATGCACTGGATT 59.453 47.619 21.98 3.54 0.00 3.01
5405 6734 4.827692 TGTAGACTTACATGGCGAAACAT 58.172 39.130 0.00 0.00 34.91 2.71
5418 6747 1.550524 CAGCCACAGCCTGTAGACTTA 59.449 52.381 0.00 0.00 41.25 2.24
5456 6785 1.960417 TTCGACAGCCACAAATGTCA 58.040 45.000 6.19 0.00 44.89 3.58
5458 6787 1.812571 GGATTCGACAGCCACAAATGT 59.187 47.619 0.00 0.00 0.00 2.71
5471 6800 9.681062 ATTCACTAAATAAAAAGGAGGATTCGA 57.319 29.630 0.00 0.00 0.00 3.71
5502 6831 3.140814 GGCTCAATCAACGGGGCC 61.141 66.667 0.00 0.00 0.00 5.80
5560 6889 7.437565 TCTGAGAATCGATTCAATCATGTTCTC 59.562 37.037 33.42 21.23 39.06 2.87
5624 6953 9.570488 AACACATAAAAACGCTACAAGTAAAAA 57.430 25.926 0.00 0.00 0.00 1.94
5687 7016 8.324306 TGGACAACAAGAAGAGATTCAGATATT 58.676 33.333 0.00 0.00 0.00 1.28
6015 7351 7.504238 TCTCAACAGCCTAAAAATACCTTCAAA 59.496 33.333 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.