Multiple sequence alignment - TraesCS5D01G294700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G294700 chr5D 100.000 4077 0 0 1 4077 391856118 391852042 0.000000e+00 7529.0
1 TraesCS5D01G294700 chr5D 94.444 162 5 2 2840 3001 474212279 474212436 3.150000e-61 246.0
2 TraesCS5D01G294700 chr5D 90.909 132 8 3 1989 2117 91841134 91841264 1.510000e-39 174.0
3 TraesCS5D01G294700 chr5B 93.906 1083 60 5 2996 4077 472273654 472272577 0.000000e+00 1629.0
4 TraesCS5D01G294700 chr5B 94.271 768 17 9 940 1680 472288687 472287920 0.000000e+00 1149.0
5 TraesCS5D01G294700 chr5B 94.585 277 13 2 2134 2409 472277910 472277635 1.050000e-115 427.0
6 TraesCS5D01G294700 chr5B 93.796 274 16 1 1679 1952 472278240 472277968 1.050000e-110 411.0
7 TraesCS5D01G294700 chr5B 91.321 265 19 1 2401 2665 472276616 472276356 3.870000e-95 359.0
8 TraesCS5D01G294700 chr5B 96.257 187 6 1 2660 2846 472273832 472273647 5.120000e-79 305.0
9 TraesCS5D01G294700 chr5B 93.421 152 10 0 2842 2993 546980229 546980078 4.100000e-55 226.0
10 TraesCS5D01G294700 chr5B 92.763 152 11 0 2842 2993 546971816 546971665 1.910000e-53 220.0
11 TraesCS5D01G294700 chr6D 96.854 890 26 2 1 889 71557611 71558499 0.000000e+00 1487.0
12 TraesCS5D01G294700 chr6D 94.893 842 42 1 1 841 86789710 86790551 0.000000e+00 1315.0
13 TraesCS5D01G294700 chr6D 89.698 796 80 2 1 794 36211143 36211938 0.000000e+00 1014.0
14 TraesCS5D01G294700 chr6D 87.000 700 83 6 3380 4077 31275538 31274845 0.000000e+00 782.0
15 TraesCS5D01G294700 chr7D 96.425 895 31 1 1 894 189313125 189312231 0.000000e+00 1474.0
16 TraesCS5D01G294700 chr7D 88.126 699 81 2 3380 4077 133231768 133232465 0.000000e+00 830.0
17 TraesCS5D01G294700 chr7D 87.322 702 84 5 3380 4077 251309035 251308335 0.000000e+00 798.0
18 TraesCS5D01G294700 chr7D 93.878 147 9 0 2847 2993 457226604 457226458 5.300000e-54 222.0
19 TraesCS5D01G294700 chr7D 90.977 133 8 2 1989 2117 111471871 111471739 4.190000e-40 176.0
20 TraesCS5D01G294700 chr7D 88.652 141 11 3 1981 2117 448711143 448711282 2.520000e-37 167.0
21 TraesCS5D01G294700 chr7D 78.698 169 22 11 1120 1284 421793074 421792916 2.590000e-17 100.0
22 TraesCS5D01G294700 chrUn 88.799 866 95 2 3 866 68784505 68783640 0.000000e+00 1061.0
23 TraesCS5D01G294700 chr4D 86.936 865 112 1 3 866 2118012 2117148 0.000000e+00 970.0
24 TraesCS5D01G294700 chr3D 86.259 866 116 3 3 866 594533815 594534679 0.000000e+00 937.0
25 TraesCS5D01G294700 chr3D 88.478 703 72 9 3380 4077 252848475 252849173 0.000000e+00 841.0
26 TraesCS5D01G294700 chr3D 94.805 154 8 0 2840 2993 591203978 591203825 1.460000e-59 241.0
27 TraesCS5D01G294700 chr3D 86.425 221 25 4 1429 1646 123566571 123566353 1.890000e-58 237.0
28 TraesCS5D01G294700 chr3D 92.424 132 7 2 1989 2117 39871151 39871282 6.960000e-43 185.0
29 TraesCS5D01G294700 chr3D 82.174 230 25 8 1420 1648 123516862 123516648 2.500000e-42 183.0
30 TraesCS5D01G294700 chr2D 86.792 795 104 1 1 794 102953113 102953907 0.000000e+00 885.0
31 TraesCS5D01G294700 chr2D 87.288 708 79 11 3377 4077 548088274 548088977 0.000000e+00 798.0
32 TraesCS5D01G294700 chr5A 94.444 576 25 4 2129 2703 495028042 495027473 0.000000e+00 880.0
33 TraesCS5D01G294700 chr5A 93.841 276 11 1 1385 1660 495028589 495028320 1.050000e-110 411.0
34 TraesCS5D01G294700 chr5A 89.298 299 29 1 1009 1307 495028914 495028619 4.980000e-99 372.0
35 TraesCS5D01G294700 chr5A 88.158 228 13 6 1757 1984 495028279 495028066 4.040000e-65 259.0
36 TraesCS5D01G294700 chr2A 88.445 701 78 3 3380 4077 750409800 750409100 0.000000e+00 843.0
37 TraesCS5D01G294700 chr4A 84.330 836 128 3 1 834 740610756 740609922 0.000000e+00 815.0
38 TraesCS5D01G294700 chr4A 93.878 147 9 0 2847 2993 18654631 18654485 5.300000e-54 222.0
39 TraesCS5D01G294700 chr6A 87.642 704 77 9 3380 4077 489365001 489365700 0.000000e+00 809.0
40 TraesCS5D01G294700 chr7B 87.147 708 80 10 3376 4077 747938616 747937914 0.000000e+00 793.0
41 TraesCS5D01G294700 chr7B 90.226 133 7 4 1989 2117 68114003 68114133 7.010000e-38 169.0
42 TraesCS5D01G294700 chr7B 78.286 175 24 9 1117 1287 439416517 439416681 2.590000e-17 100.0
43 TraesCS5D01G294700 chr7B 96.875 32 1 0 2716 2747 371785167 371785136 2.000000e-03 54.7
44 TraesCS5D01G294700 chr7A 96.599 147 5 0 2847 2993 262469627 262469481 1.130000e-60 244.0
45 TraesCS5D01G294700 chr3B 86.449 214 26 2 1429 1639 176859695 176859482 8.810000e-57 231.0
46 TraesCS5D01G294700 chr3B 86.449 214 26 2 1429 1639 176879446 176879233 8.810000e-57 231.0
47 TraesCS5D01G294700 chr3B 81.938 227 27 6 1420 1646 176783208 176782996 3.240000e-41 180.0
48 TraesCS5D01G294700 chr3B 84.043 188 24 5 1101 1285 176783470 176783286 4.190000e-40 176.0
49 TraesCS5D01G294700 chr3B 83.422 187 29 2 1101 1286 176859981 176859796 5.420000e-39 172.0
50 TraesCS5D01G294700 chr3B 83.422 187 29 2 1101 1286 176879732 176879547 5.420000e-39 172.0
51 TraesCS5D01G294700 chr4B 91.176 170 12 3 2835 3002 22227485 22227317 1.140000e-55 228.0
52 TraesCS5D01G294700 chr1D 91.558 154 12 1 2841 2993 486703926 486703773 1.150000e-50 211.0
53 TraesCS5D01G294700 chr6B 91.729 133 6 3 1989 2117 616456959 616457090 3.240000e-41 180.0
54 TraesCS5D01G294700 chr3A 83.871 186 28 2 1101 1285 131415501 131415685 4.190000e-40 176.0
55 TraesCS5D01G294700 chr3A 90.152 132 10 3 1989 2117 674222181 674222312 7.010000e-38 169.0
56 TraesCS5D01G294700 chr3A 82.540 189 26 6 1101 1285 131084042 131083857 4.220000e-35 159.0
57 TraesCS5D01G294700 chr1B 91.538 130 6 5 1991 2117 31813068 31812941 1.510000e-39 174.0
58 TraesCS5D01G294700 chr1B 90.977 133 7 3 1989 2117 317444455 317444324 1.510000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G294700 chr5D 391852042 391856118 4076 True 7529.0 7529 100.00000 1 4077 1 chr5D.!!$R1 4076
1 TraesCS5D01G294700 chr5B 472287920 472288687 767 True 1149.0 1149 94.27100 940 1680 1 chr5B.!!$R1 740
2 TraesCS5D01G294700 chr5B 472272577 472278240 5663 True 626.2 1629 93.97300 1679 4077 5 chr5B.!!$R4 2398
3 TraesCS5D01G294700 chr6D 71557611 71558499 888 False 1487.0 1487 96.85400 1 889 1 chr6D.!!$F2 888
4 TraesCS5D01G294700 chr6D 86789710 86790551 841 False 1315.0 1315 94.89300 1 841 1 chr6D.!!$F3 840
5 TraesCS5D01G294700 chr6D 36211143 36211938 795 False 1014.0 1014 89.69800 1 794 1 chr6D.!!$F1 793
6 TraesCS5D01G294700 chr6D 31274845 31275538 693 True 782.0 782 87.00000 3380 4077 1 chr6D.!!$R1 697
7 TraesCS5D01G294700 chr7D 189312231 189313125 894 True 1474.0 1474 96.42500 1 894 1 chr7D.!!$R2 893
8 TraesCS5D01G294700 chr7D 133231768 133232465 697 False 830.0 830 88.12600 3380 4077 1 chr7D.!!$F1 697
9 TraesCS5D01G294700 chr7D 251308335 251309035 700 True 798.0 798 87.32200 3380 4077 1 chr7D.!!$R3 697
10 TraesCS5D01G294700 chrUn 68783640 68784505 865 True 1061.0 1061 88.79900 3 866 1 chrUn.!!$R1 863
11 TraesCS5D01G294700 chr4D 2117148 2118012 864 True 970.0 970 86.93600 3 866 1 chr4D.!!$R1 863
12 TraesCS5D01G294700 chr3D 594533815 594534679 864 False 937.0 937 86.25900 3 866 1 chr3D.!!$F3 863
13 TraesCS5D01G294700 chr3D 252848475 252849173 698 False 841.0 841 88.47800 3380 4077 1 chr3D.!!$F2 697
14 TraesCS5D01G294700 chr2D 102953113 102953907 794 False 885.0 885 86.79200 1 794 1 chr2D.!!$F1 793
15 TraesCS5D01G294700 chr2D 548088274 548088977 703 False 798.0 798 87.28800 3377 4077 1 chr2D.!!$F2 700
16 TraesCS5D01G294700 chr5A 495027473 495028914 1441 True 480.5 880 91.43525 1009 2703 4 chr5A.!!$R1 1694
17 TraesCS5D01G294700 chr2A 750409100 750409800 700 True 843.0 843 88.44500 3380 4077 1 chr2A.!!$R1 697
18 TraesCS5D01G294700 chr4A 740609922 740610756 834 True 815.0 815 84.33000 1 834 1 chr4A.!!$R2 833
19 TraesCS5D01G294700 chr6A 489365001 489365700 699 False 809.0 809 87.64200 3380 4077 1 chr6A.!!$F1 697
20 TraesCS5D01G294700 chr7B 747937914 747938616 702 True 793.0 793 87.14700 3376 4077 1 chr7B.!!$R2 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 938 0.101399 AATAGCAGTCAGACGCTCCG 59.899 55.0 19.05 0.0 39.70 4.63 F
1734 1765 0.041312 GTAAACTGCACCACACTGCG 60.041 55.0 0.00 0.0 40.31 5.18 F
2085 2116 0.103208 GTCATAGAGTCACGCTGGGG 59.897 60.0 0.00 0.0 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 2097 0.103208 CCCCAGCGTGACTCTATGAC 59.897 60.0 0.00 0.00 0.00 3.06 R
3034 6625 0.043053 CGCATGCAGTACGAAATCCG 60.043 55.0 19.57 0.00 45.44 4.18 R
3258 6849 0.323360 TACAATGCTTGACAGGGCCC 60.323 55.0 16.46 16.46 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 178 2.476241 CCGGCAAAAATTCTGACAAAGC 59.524 45.455 0.00 0.00 0.00 3.51
190 191 2.159014 TGACAAAGCTACAGGTTCACGT 60.159 45.455 0.00 0.00 34.26 4.49
306 309 1.079819 CGGACTCGCAACCTGTGAT 60.080 57.895 0.00 0.00 36.18 3.06
486 489 1.136085 CCAACAACCACTTCATACGCG 60.136 52.381 3.53 3.53 0.00 6.01
512 515 9.710900 GTCAAATTTGAATTGAAATCCTACCTT 57.289 29.630 22.07 0.00 38.44 3.50
664 667 2.071778 AAACATAGCCCGCCATTGAT 57.928 45.000 0.00 0.00 0.00 2.57
894 898 3.483869 GCCTCGGCCTCCCTCATT 61.484 66.667 0.00 0.00 34.56 2.57
895 899 3.049080 GCCTCGGCCTCCCTCATTT 62.049 63.158 0.00 0.00 34.56 2.32
896 900 1.147153 CCTCGGCCTCCCTCATTTC 59.853 63.158 0.00 0.00 0.00 2.17
897 901 1.147153 CTCGGCCTCCCTCATTTCC 59.853 63.158 0.00 0.00 0.00 3.13
898 902 2.193248 CGGCCTCCCTCATTTCCC 59.807 66.667 0.00 0.00 0.00 3.97
899 903 2.603580 GGCCTCCCTCATTTCCCC 59.396 66.667 0.00 0.00 0.00 4.81
900 904 2.009302 GGCCTCCCTCATTTCCCCT 61.009 63.158 0.00 0.00 0.00 4.79
901 905 1.534203 GCCTCCCTCATTTCCCCTC 59.466 63.158 0.00 0.00 0.00 4.30
902 906 2.000825 GCCTCCCTCATTTCCCCTCC 62.001 65.000 0.00 0.00 0.00 4.30
903 907 1.700042 CCTCCCTCATTTCCCCTCCG 61.700 65.000 0.00 0.00 0.00 4.63
904 908 1.692749 TCCCTCATTTCCCCTCCGG 60.693 63.158 0.00 0.00 0.00 5.14
905 909 1.692749 CCCTCATTTCCCCTCCGGA 60.693 63.158 2.93 2.93 39.68 5.14
914 918 2.320681 TCCCCTCCGGAATACTATGG 57.679 55.000 5.23 0.24 37.88 2.74
915 919 1.790779 TCCCCTCCGGAATACTATGGA 59.209 52.381 5.23 0.81 37.88 3.41
916 920 2.180529 TCCCCTCCGGAATACTATGGAA 59.819 50.000 5.23 0.00 37.88 3.53
917 921 3.181399 TCCCCTCCGGAATACTATGGAAT 60.181 47.826 5.23 0.00 37.88 3.01
918 922 4.046231 TCCCCTCCGGAATACTATGGAATA 59.954 45.833 5.23 0.00 37.88 1.75
919 923 5.813368 TCCCCTCCGGAATACTATGGAATAG 60.813 48.000 5.23 0.00 45.02 1.73
930 934 2.231215 ATGGAATAGCAGTCAGACGC 57.769 50.000 8.75 8.75 0.00 5.19
931 935 1.186200 TGGAATAGCAGTCAGACGCT 58.814 50.000 19.32 19.32 42.34 5.07
932 936 1.135139 TGGAATAGCAGTCAGACGCTC 59.865 52.381 19.05 8.93 39.70 5.03
933 937 1.537135 GGAATAGCAGTCAGACGCTCC 60.537 57.143 19.05 12.95 39.70 4.70
934 938 0.101399 AATAGCAGTCAGACGCTCCG 59.899 55.000 19.05 0.00 39.70 4.63
935 939 1.729470 ATAGCAGTCAGACGCTCCGG 61.729 60.000 19.05 0.00 39.70 5.14
936 940 2.814913 TAGCAGTCAGACGCTCCGGA 62.815 60.000 19.05 2.93 39.70 5.14
937 941 2.962569 CAGTCAGACGCTCCGGAA 59.037 61.111 5.23 0.00 0.00 4.30
938 942 1.513158 CAGTCAGACGCTCCGGAAT 59.487 57.895 5.23 0.00 0.00 3.01
989 993 2.607750 ATGCACTCCGTCCCCACT 60.608 61.111 0.00 0.00 0.00 4.00
1007 1021 0.179073 CTGTCGGCCATACCAGGAAG 60.179 60.000 2.24 0.00 39.03 3.46
1394 1419 7.096551 TCCAAATCAGCCTTTTTATTAGTTGC 58.903 34.615 0.00 0.00 0.00 4.17
1641 1672 2.260869 CGGCACAACCCAAGGTCTG 61.261 63.158 0.00 0.00 33.12 3.51
1642 1673 2.564721 GGCACAACCCAAGGTCTGC 61.565 63.158 7.53 7.53 38.08 4.26
1663 1694 3.616560 GCGTGGTCCAACTCTAATTCTCA 60.617 47.826 0.00 0.00 0.00 3.27
1725 1756 3.568538 CATTTCAGCCAGTAAACTGCAC 58.431 45.455 4.53 0.00 42.47 4.57
1726 1757 1.604604 TTCAGCCAGTAAACTGCACC 58.395 50.000 4.53 0.00 42.47 5.01
1732 1763 1.603802 CCAGTAAACTGCACCACACTG 59.396 52.381 4.53 6.74 42.47 3.66
1734 1765 0.041312 GTAAACTGCACCACACTGCG 60.041 55.000 0.00 0.00 40.31 5.18
1746 1777 2.031163 ACTGCGGAGTGACAAGGC 59.969 61.111 9.49 0.00 0.00 4.35
1751 1782 1.845809 GCGGAGTGACAAGGCAACAG 61.846 60.000 0.00 0.00 41.41 3.16
1948 1979 3.855159 GGTACCGACCTCAATTGCT 57.145 52.632 0.00 0.00 43.16 3.91
1958 1989 4.320421 CGACCTCAATTGCTTCATCAACAA 60.320 41.667 0.00 0.00 0.00 2.83
1959 1990 5.531634 GACCTCAATTGCTTCATCAACAAA 58.468 37.500 0.00 0.00 0.00 2.83
1967 1998 2.729882 GCTTCATCAACAAAGCAAGCTG 59.270 45.455 0.00 0.00 45.67 4.24
1971 2002 5.112220 TCATCAACAAAGCAAGCTGTTAG 57.888 39.130 0.00 0.00 34.04 2.34
1972 2003 4.580167 TCATCAACAAAGCAAGCTGTTAGT 59.420 37.500 0.00 0.00 34.04 2.24
1974 2005 6.262049 TCATCAACAAAGCAAGCTGTTAGTTA 59.738 34.615 0.00 0.00 34.04 2.24
1975 2006 5.816919 TCAACAAAGCAAGCTGTTAGTTAC 58.183 37.500 0.00 0.00 34.04 2.50
1976 2007 4.830826 ACAAAGCAAGCTGTTAGTTACC 57.169 40.909 0.00 0.00 0.00 2.85
1979 2010 5.359860 ACAAAGCAAGCTGTTAGTTACCTTT 59.640 36.000 0.00 0.00 0.00 3.11
1980 2011 6.544564 ACAAAGCAAGCTGTTAGTTACCTTTA 59.455 34.615 0.00 0.00 0.00 1.85
1981 2012 7.230712 ACAAAGCAAGCTGTTAGTTACCTTTAT 59.769 33.333 0.00 0.00 0.00 1.40
1985 2016 8.101419 AGCAAGCTGTTAGTTACCTTTATTAGT 58.899 33.333 0.00 0.00 0.00 2.24
1986 2017 9.374838 GCAAGCTGTTAGTTACCTTTATTAGTA 57.625 33.333 0.00 0.00 0.00 1.82
2018 2049 7.907841 AAAAAGGTTCCCCGCTTTATATTAT 57.092 32.000 0.00 0.00 35.12 1.28
2019 2050 8.999905 AAAAAGGTTCCCCGCTTTATATTATA 57.000 30.769 0.00 0.00 35.12 0.98
2020 2051 8.999905 AAAAGGTTCCCCGCTTTATATTATAA 57.000 30.769 0.00 0.00 35.12 0.98
2021 2052 8.999905 AAAGGTTCCCCGCTTTATATTATAAA 57.000 30.769 8.26 8.26 35.12 1.40
2022 2053 8.631480 AAGGTTCCCCGCTTTATATTATAAAG 57.369 34.615 23.28 23.28 37.53 1.85
2035 2066 9.724839 TTTATATTATAAAGCAACGAACCAAGC 57.275 29.630 5.01 0.00 0.00 4.01
2036 2067 5.637006 ATTATAAAGCAACGAACCAAGCA 57.363 34.783 0.00 0.00 0.00 3.91
2037 2068 5.637006 TTATAAAGCAACGAACCAAGCAT 57.363 34.783 0.00 0.00 0.00 3.79
2038 2069 2.422276 AAAGCAACGAACCAAGCATC 57.578 45.000 0.00 0.00 0.00 3.91
2039 2070 0.598065 AAGCAACGAACCAAGCATCC 59.402 50.000 0.00 0.00 0.00 3.51
2040 2071 0.537143 AGCAACGAACCAAGCATCCA 60.537 50.000 0.00 0.00 0.00 3.41
2041 2072 0.313672 GCAACGAACCAAGCATCCAA 59.686 50.000 0.00 0.00 0.00 3.53
2042 2073 1.930371 GCAACGAACCAAGCATCCAAC 60.930 52.381 0.00 0.00 0.00 3.77
2043 2074 1.336440 CAACGAACCAAGCATCCAACA 59.664 47.619 0.00 0.00 0.00 3.33
2044 2075 0.951558 ACGAACCAAGCATCCAACAC 59.048 50.000 0.00 0.00 0.00 3.32
2045 2076 0.950836 CGAACCAAGCATCCAACACA 59.049 50.000 0.00 0.00 0.00 3.72
2046 2077 1.336440 CGAACCAAGCATCCAACACAA 59.664 47.619 0.00 0.00 0.00 3.33
2047 2078 2.742774 GAACCAAGCATCCAACACAAC 58.257 47.619 0.00 0.00 0.00 3.32
2048 2079 1.774110 ACCAAGCATCCAACACAACA 58.226 45.000 0.00 0.00 0.00 3.33
2049 2080 1.682854 ACCAAGCATCCAACACAACAG 59.317 47.619 0.00 0.00 0.00 3.16
2050 2081 1.682854 CCAAGCATCCAACACAACAGT 59.317 47.619 0.00 0.00 0.00 3.55
2051 2082 2.884012 CCAAGCATCCAACACAACAGTA 59.116 45.455 0.00 0.00 0.00 2.74
2052 2083 3.304659 CCAAGCATCCAACACAACAGTAC 60.305 47.826 0.00 0.00 0.00 2.73
2053 2084 3.207265 AGCATCCAACACAACAGTACA 57.793 42.857 0.00 0.00 0.00 2.90
2054 2085 3.550820 AGCATCCAACACAACAGTACAA 58.449 40.909 0.00 0.00 0.00 2.41
2055 2086 3.951037 AGCATCCAACACAACAGTACAAA 59.049 39.130 0.00 0.00 0.00 2.83
2056 2087 4.400884 AGCATCCAACACAACAGTACAAAA 59.599 37.500 0.00 0.00 0.00 2.44
2057 2088 5.068987 AGCATCCAACACAACAGTACAAAAT 59.931 36.000 0.00 0.00 0.00 1.82
2058 2089 6.264292 AGCATCCAACACAACAGTACAAAATA 59.736 34.615 0.00 0.00 0.00 1.40
2059 2090 6.362283 GCATCCAACACAACAGTACAAAATAC 59.638 38.462 0.00 0.00 0.00 1.89
2060 2091 7.421599 CATCCAACACAACAGTACAAAATACA 58.578 34.615 0.00 0.00 0.00 2.29
2061 2092 7.392494 TCCAACACAACAGTACAAAATACAA 57.608 32.000 0.00 0.00 0.00 2.41
2062 2093 8.001881 TCCAACACAACAGTACAAAATACAAT 57.998 30.769 0.00 0.00 0.00 2.71
2063 2094 8.132362 TCCAACACAACAGTACAAAATACAATC 58.868 33.333 0.00 0.00 0.00 2.67
2064 2095 7.918033 CCAACACAACAGTACAAAATACAATCA 59.082 33.333 0.00 0.00 0.00 2.57
2065 2096 9.295214 CAACACAACAGTACAAAATACAATCAA 57.705 29.630 0.00 0.00 0.00 2.57
2066 2097 9.515020 AACACAACAGTACAAAATACAATCAAG 57.485 29.630 0.00 0.00 0.00 3.02
2067 2098 8.682710 ACACAACAGTACAAAATACAATCAAGT 58.317 29.630 0.00 0.00 0.00 3.16
2068 2099 9.169468 CACAACAGTACAAAATACAATCAAGTC 57.831 33.333 0.00 0.00 0.00 3.01
2069 2100 8.898761 ACAACAGTACAAAATACAATCAAGTCA 58.101 29.630 0.00 0.00 0.00 3.41
2070 2101 9.897744 CAACAGTACAAAATACAATCAAGTCAT 57.102 29.630 0.00 0.00 0.00 3.06
2077 2108 9.725019 ACAAAATACAATCAAGTCATAGAGTCA 57.275 29.630 0.00 0.00 0.00 3.41
2078 2109 9.979270 CAAAATACAATCAAGTCATAGAGTCAC 57.021 33.333 0.00 0.00 0.00 3.67
2079 2110 7.993821 AATACAATCAAGTCATAGAGTCACG 57.006 36.000 0.00 0.00 0.00 4.35
2080 2111 4.177026 ACAATCAAGTCATAGAGTCACGC 58.823 43.478 0.00 0.00 0.00 5.34
2081 2112 4.081972 ACAATCAAGTCATAGAGTCACGCT 60.082 41.667 0.00 0.00 0.00 5.07
2082 2113 3.494045 TCAAGTCATAGAGTCACGCTG 57.506 47.619 0.00 0.00 0.00 5.18
2083 2114 2.164422 TCAAGTCATAGAGTCACGCTGG 59.836 50.000 0.00 0.00 0.00 4.85
2084 2115 1.107114 AGTCATAGAGTCACGCTGGG 58.893 55.000 0.00 0.00 0.00 4.45
2085 2116 0.103208 GTCATAGAGTCACGCTGGGG 59.897 60.000 0.00 0.00 0.00 4.96
2086 2117 1.043116 TCATAGAGTCACGCTGGGGG 61.043 60.000 0.00 0.00 0.00 5.40
2087 2118 2.435693 ATAGAGTCACGCTGGGGGC 61.436 63.158 0.00 0.00 37.64 5.80
2088 2119 3.897681 TAGAGTCACGCTGGGGGCA 62.898 63.158 0.00 0.00 41.91 5.36
2097 2128 2.674380 CTGGGGGCACAGCAAGAC 60.674 66.667 0.00 0.00 0.00 3.01
2098 2129 3.496309 CTGGGGGCACAGCAAGACA 62.496 63.158 0.00 0.00 0.00 3.41
2099 2130 2.203480 GGGGGCACAGCAAGACAA 60.203 61.111 0.00 0.00 0.00 3.18
2100 2131 2.270986 GGGGGCACAGCAAGACAAG 61.271 63.158 0.00 0.00 0.00 3.16
2101 2132 2.647297 GGGCACAGCAAGACAAGC 59.353 61.111 0.00 0.00 0.00 4.01
2102 2133 2.647297 GGCACAGCAAGACAAGCC 59.353 61.111 0.00 0.00 34.71 4.35
2103 2134 2.647297 GCACAGCAAGACAAGCCC 59.353 61.111 0.00 0.00 0.00 5.19
2104 2135 2.195567 GCACAGCAAGACAAGCCCA 61.196 57.895 0.00 0.00 0.00 5.36
2105 2136 1.737355 GCACAGCAAGACAAGCCCAA 61.737 55.000 0.00 0.00 0.00 4.12
2106 2137 0.313043 CACAGCAAGACAAGCCCAAG 59.687 55.000 0.00 0.00 0.00 3.61
2107 2138 0.825010 ACAGCAAGACAAGCCCAAGG 60.825 55.000 0.00 0.00 0.00 3.61
2108 2139 0.538057 CAGCAAGACAAGCCCAAGGA 60.538 55.000 0.00 0.00 0.00 3.36
2109 2140 0.185901 AGCAAGACAAGCCCAAGGAA 59.814 50.000 0.00 0.00 0.00 3.36
2110 2141 1.039856 GCAAGACAAGCCCAAGGAAA 58.960 50.000 0.00 0.00 0.00 3.13
2111 2142 1.412343 GCAAGACAAGCCCAAGGAAAA 59.588 47.619 0.00 0.00 0.00 2.29
2112 2143 2.803133 GCAAGACAAGCCCAAGGAAAAC 60.803 50.000 0.00 0.00 0.00 2.43
2113 2144 2.695147 CAAGACAAGCCCAAGGAAAACT 59.305 45.455 0.00 0.00 0.00 2.66
2114 2145 3.876309 AGACAAGCCCAAGGAAAACTA 57.124 42.857 0.00 0.00 0.00 2.24
2115 2146 4.178956 AGACAAGCCCAAGGAAAACTAA 57.821 40.909 0.00 0.00 0.00 2.24
2116 2147 4.542697 AGACAAGCCCAAGGAAAACTAAA 58.457 39.130 0.00 0.00 0.00 1.85
2117 2148 4.341235 AGACAAGCCCAAGGAAAACTAAAC 59.659 41.667 0.00 0.00 0.00 2.01
2118 2149 3.386726 ACAAGCCCAAGGAAAACTAAACC 59.613 43.478 0.00 0.00 0.00 3.27
2119 2150 3.612795 AGCCCAAGGAAAACTAAACCT 57.387 42.857 0.00 0.00 35.36 3.50
2120 2151 3.923648 AGCCCAAGGAAAACTAAACCTT 58.076 40.909 0.00 0.00 43.63 3.50
2121 2152 4.295201 AGCCCAAGGAAAACTAAACCTTT 58.705 39.130 0.00 0.00 41.33 3.11
2122 2153 4.344102 AGCCCAAGGAAAACTAAACCTTTC 59.656 41.667 0.00 0.00 41.33 2.62
2123 2154 4.344102 GCCCAAGGAAAACTAAACCTTTCT 59.656 41.667 0.00 0.00 41.33 2.52
2124 2155 5.163343 GCCCAAGGAAAACTAAACCTTTCTT 60.163 40.000 0.00 0.00 41.33 2.52
2125 2156 6.631766 GCCCAAGGAAAACTAAACCTTTCTTT 60.632 38.462 0.00 0.00 41.33 2.52
2126 2157 6.761242 CCCAAGGAAAACTAAACCTTTCTTTG 59.239 38.462 10.65 10.65 43.15 2.77
2127 2158 7.327975 CCAAGGAAAACTAAACCTTTCTTTGT 58.672 34.615 14.39 0.00 42.52 2.83
2224 2262 1.668101 AAGATCCTCACCGGCGACTC 61.668 60.000 9.30 0.00 0.00 3.36
2334 2373 1.371758 CCATCGTCTATGCCGACCG 60.372 63.158 0.00 0.00 37.12 4.79
2416 2455 3.958798 ACCACATATTCTGTACGTAGCCT 59.041 43.478 0.00 0.00 35.91 4.58
2417 2456 4.037684 ACCACATATTCTGTACGTAGCCTC 59.962 45.833 0.00 0.00 35.91 4.70
2419 2458 4.037565 CACATATTCTGTACGTAGCCTCCA 59.962 45.833 0.00 0.00 35.91 3.86
2426 3488 4.463539 TCTGTACGTAGCCTCCATGTTTAA 59.536 41.667 0.00 0.00 0.00 1.52
2430 3492 4.839121 ACGTAGCCTCCATGTTTAAATGA 58.161 39.130 0.00 0.00 0.00 2.57
2435 3497 4.403432 AGCCTCCATGTTTAAATGATGTGG 59.597 41.667 0.00 3.85 0.00 4.17
2453 3515 0.250338 GGGCCGGTGAGGATTGTATC 60.250 60.000 1.90 0.00 45.00 2.24
2540 3602 1.620819 ACGCTTCTCTGTGGTGAAGAT 59.379 47.619 10.64 0.00 42.37 2.40
2715 6306 1.747924 GGTACTACCTCCGTTCTGGTC 59.252 57.143 0.00 0.00 39.52 4.02
2771 6362 0.536915 GAATCATGGAGAGCAGGCCC 60.537 60.000 0.00 0.00 0.00 5.80
2772 6363 0.992431 AATCATGGAGAGCAGGCCCT 60.992 55.000 0.00 0.00 0.00 5.19
2773 6364 1.706995 ATCATGGAGAGCAGGCCCTG 61.707 60.000 6.32 6.32 34.12 4.45
2774 6365 2.041762 ATGGAGAGCAGGCCCTGA 59.958 61.111 16.85 0.00 32.44 3.86
2817 6408 3.271729 GAGTCTCGTATGTCTGACTCCA 58.728 50.000 9.51 0.00 45.54 3.86
2820 6411 4.336993 AGTCTCGTATGTCTGACTCCATTC 59.663 45.833 9.51 0.00 35.13 2.67
2841 6432 8.255206 CCATTCAAGGAATTTCTGATCATGAAA 58.745 33.333 17.13 17.13 37.74 2.69
2842 6433 9.647797 CATTCAAGGAATTTCTGATCATGAAAA 57.352 29.630 18.12 10.75 37.05 2.29
2870 6461 7.845066 ATAGTTTTAAATAGCCGGCTATAGC 57.155 36.000 41.53 29.09 38.20 2.97
2871 6462 5.866207 AGTTTTAAATAGCCGGCTATAGCT 58.134 37.500 41.53 30.55 43.20 3.32
2872 6463 6.296803 AGTTTTAAATAGCCGGCTATAGCTT 58.703 36.000 41.53 33.42 40.56 3.74
2873 6464 6.427242 AGTTTTAAATAGCCGGCTATAGCTTC 59.573 38.462 41.53 29.01 40.56 3.86
2874 6465 2.656560 AATAGCCGGCTATAGCTTCG 57.343 50.000 41.53 18.50 40.56 3.79
2875 6466 0.173708 ATAGCCGGCTATAGCTTCGC 59.826 55.000 41.03 20.23 40.56 4.70
2876 6467 0.894184 TAGCCGGCTATAGCTTCGCT 60.894 55.000 32.24 25.87 43.41 4.93
2877 6468 0.894184 AGCCGGCTATAGCTTCGCTA 60.894 55.000 31.86 0.00 45.55 4.26
2885 6476 1.585006 TAGCTTCGCTATAGCCCGC 59.415 57.895 19.00 17.12 40.44 6.13
2886 6477 0.894184 TAGCTTCGCTATAGCCCGCT 60.894 55.000 24.41 24.41 40.44 5.52
2887 6478 0.894184 AGCTTCGCTATAGCCCGCTA 60.894 55.000 21.56 0.00 36.99 4.26
2888 6479 0.173708 GCTTCGCTATAGCCCGCTAT 59.826 55.000 19.00 13.46 41.58 2.97
2889 6480 1.404391 GCTTCGCTATAGCCCGCTATA 59.596 52.381 19.00 14.20 39.65 1.31
2896 6487 4.473477 CTATAGCCCGCTATAGCCTTTT 57.527 45.455 23.85 5.54 46.26 2.27
2897 6488 3.790089 ATAGCCCGCTATAGCCTTTTT 57.210 42.857 19.00 4.18 37.47 1.94
2898 6489 4.903045 ATAGCCCGCTATAGCCTTTTTA 57.097 40.909 19.00 6.18 37.47 1.52
2899 6490 3.127425 AGCCCGCTATAGCCTTTTTAG 57.873 47.619 19.00 2.99 37.91 1.85
2900 6491 2.438392 AGCCCGCTATAGCCTTTTTAGT 59.562 45.455 19.00 0.00 37.91 2.24
2901 6492 3.644738 AGCCCGCTATAGCCTTTTTAGTA 59.355 43.478 19.00 0.00 37.91 1.82
2902 6493 3.995048 GCCCGCTATAGCCTTTTTAGTAG 59.005 47.826 19.00 0.81 37.91 2.57
2903 6494 4.566987 CCCGCTATAGCCTTTTTAGTAGG 58.433 47.826 19.00 9.66 37.91 3.18
2904 6495 4.562963 CCCGCTATAGCCTTTTTAGTAGGG 60.563 50.000 19.00 14.56 37.91 3.53
2905 6496 4.040095 CCGCTATAGCCTTTTTAGTAGGGT 59.960 45.833 19.00 0.00 45.08 4.34
2906 6497 4.989168 CGCTATAGCCTTTTTAGTAGGGTG 59.011 45.833 19.00 0.00 43.07 4.61
2907 6498 4.755629 GCTATAGCCTTTTTAGTAGGGTGC 59.244 45.833 14.13 0.00 43.07 5.01
2908 6499 2.509166 AGCCTTTTTAGTAGGGTGCC 57.491 50.000 0.00 0.00 41.72 5.01
2909 6500 1.092348 GCCTTTTTAGTAGGGTGCCG 58.908 55.000 0.00 0.00 33.19 5.69
2910 6501 1.092348 CCTTTTTAGTAGGGTGCCGC 58.908 55.000 0.00 0.00 0.00 6.53
2911 6502 1.339727 CCTTTTTAGTAGGGTGCCGCT 60.340 52.381 0.00 0.00 0.00 5.52
2912 6503 2.093341 CCTTTTTAGTAGGGTGCCGCTA 60.093 50.000 0.00 0.00 0.00 4.26
2913 6504 3.602483 CTTTTTAGTAGGGTGCCGCTAA 58.398 45.455 0.00 0.00 30.97 3.09
2914 6505 3.699411 TTTTAGTAGGGTGCCGCTAAA 57.301 42.857 0.00 0.00 35.69 1.85
2915 6506 3.918294 TTTAGTAGGGTGCCGCTAAAT 57.082 42.857 0.00 0.00 34.10 1.40
2916 6507 2.902705 TAGTAGGGTGCCGCTAAATG 57.097 50.000 0.00 0.00 30.97 2.32
2917 6508 0.180406 AGTAGGGTGCCGCTAAATGG 59.820 55.000 0.00 0.00 30.97 3.16
2918 6509 0.107361 GTAGGGTGCCGCTAAATGGT 60.107 55.000 0.00 0.00 30.97 3.55
2919 6510 0.179468 TAGGGTGCCGCTAAATGGTC 59.821 55.000 0.00 0.00 0.00 4.02
2920 6511 2.469516 GGGTGCCGCTAAATGGTCG 61.470 63.158 0.00 0.00 0.00 4.79
2921 6512 2.403586 GTGCCGCTAAATGGTCGC 59.596 61.111 0.00 0.00 0.00 5.19
2922 6513 2.822255 TGCCGCTAAATGGTCGCC 60.822 61.111 0.00 0.00 0.00 5.54
2923 6514 2.513897 GCCGCTAAATGGTCGCCT 60.514 61.111 0.00 0.00 0.00 5.52
2924 6515 2.112815 GCCGCTAAATGGTCGCCTT 61.113 57.895 0.00 0.00 0.00 4.35
2925 6516 2.014594 CCGCTAAATGGTCGCCTTC 58.985 57.895 0.00 0.00 0.00 3.46
2926 6517 0.742990 CCGCTAAATGGTCGCCTTCA 60.743 55.000 0.00 0.00 0.00 3.02
2927 6518 0.373716 CGCTAAATGGTCGCCTTCAC 59.626 55.000 0.00 0.00 0.00 3.18
2928 6519 1.448985 GCTAAATGGTCGCCTTCACA 58.551 50.000 0.00 0.00 0.00 3.58
2929 6520 1.810151 GCTAAATGGTCGCCTTCACAA 59.190 47.619 0.00 0.00 0.00 3.33
2930 6521 2.227865 GCTAAATGGTCGCCTTCACAAA 59.772 45.455 0.00 0.00 0.00 2.83
2931 6522 3.119495 GCTAAATGGTCGCCTTCACAAAT 60.119 43.478 0.00 0.00 0.00 2.32
2932 6523 4.095782 GCTAAATGGTCGCCTTCACAAATA 59.904 41.667 0.00 0.00 0.00 1.40
2933 6524 4.701956 AAATGGTCGCCTTCACAAATAG 57.298 40.909 0.00 0.00 0.00 1.73
2934 6525 1.448985 TGGTCGCCTTCACAAATAGC 58.551 50.000 0.00 0.00 0.00 2.97
2935 6526 0.733150 GGTCGCCTTCACAAATAGCC 59.267 55.000 0.00 0.00 0.00 3.93
2936 6527 0.733150 GTCGCCTTCACAAATAGCCC 59.267 55.000 0.00 0.00 0.00 5.19
2937 6528 0.742990 TCGCCTTCACAAATAGCCCG 60.743 55.000 0.00 0.00 0.00 6.13
2938 6529 1.433471 GCCTTCACAAATAGCCCGC 59.567 57.895 0.00 0.00 0.00 6.13
2939 6530 1.032114 GCCTTCACAAATAGCCCGCT 61.032 55.000 0.00 0.00 0.00 5.52
2940 6531 1.745827 GCCTTCACAAATAGCCCGCTA 60.746 52.381 0.00 0.00 0.00 4.26
2941 6532 2.851195 CCTTCACAAATAGCCCGCTAT 58.149 47.619 3.31 3.31 40.63 2.97
2942 6533 3.805807 GCCTTCACAAATAGCCCGCTATA 60.806 47.826 9.56 0.00 38.20 1.31
2943 6534 3.997021 CCTTCACAAATAGCCCGCTATAG 59.003 47.826 9.56 8.22 38.20 1.31
2944 6535 3.040147 TCACAAATAGCCCGCTATAGC 57.960 47.619 15.09 15.09 38.20 2.97
2945 6536 2.632996 TCACAAATAGCCCGCTATAGCT 59.367 45.455 21.98 6.31 43.20 3.32
2946 6537 2.738846 CACAAATAGCCCGCTATAGCTG 59.261 50.000 21.98 15.59 40.28 4.24
2947 6538 2.632996 ACAAATAGCCCGCTATAGCTGA 59.367 45.455 21.98 0.99 40.28 4.26
2948 6539 3.261897 ACAAATAGCCCGCTATAGCTGAT 59.738 43.478 21.98 13.94 40.28 2.90
2949 6540 4.256920 CAAATAGCCCGCTATAGCTGATT 58.743 43.478 21.98 9.01 40.28 2.57
2950 6541 4.559862 AATAGCCCGCTATAGCTGATTT 57.440 40.909 21.98 5.05 40.28 2.17
2951 6542 2.175878 AGCCCGCTATAGCTGATTTG 57.824 50.000 21.98 5.68 38.11 2.32
2952 6543 1.694150 AGCCCGCTATAGCTGATTTGA 59.306 47.619 21.98 0.00 38.11 2.69
2953 6544 2.104792 AGCCCGCTATAGCTGATTTGAA 59.895 45.455 21.98 0.00 38.11 2.69
2954 6545 2.481952 GCCCGCTATAGCTGATTTGAAG 59.518 50.000 21.98 3.56 39.32 3.02
2955 6546 3.070018 CCCGCTATAGCTGATTTGAAGG 58.930 50.000 21.98 11.98 39.32 3.46
2956 6547 2.481952 CCGCTATAGCTGATTTGAAGGC 59.518 50.000 21.98 0.00 39.32 4.35
2957 6548 2.481952 CGCTATAGCTGATTTGAAGGCC 59.518 50.000 21.98 0.00 39.32 5.19
2958 6549 2.816672 GCTATAGCTGATTTGAAGGCCC 59.183 50.000 17.75 0.00 38.21 5.80
2959 6550 1.972872 ATAGCTGATTTGAAGGCCCG 58.027 50.000 0.00 0.00 0.00 6.13
2960 6551 0.748005 TAGCTGATTTGAAGGCCCGC 60.748 55.000 0.00 0.00 0.00 6.13
2961 6552 3.068729 GCTGATTTGAAGGCCCGCC 62.069 63.158 0.00 0.00 0.00 6.13
2962 6553 2.749839 TGATTTGAAGGCCCGCCG 60.750 61.111 0.00 0.00 41.95 6.46
2963 6554 4.193334 GATTTGAAGGCCCGCCGC 62.193 66.667 0.00 0.00 41.95 6.53
2964 6555 4.740822 ATTTGAAGGCCCGCCGCT 62.741 61.111 0.00 0.00 41.95 5.52
2965 6556 3.338275 ATTTGAAGGCCCGCCGCTA 62.338 57.895 0.00 0.00 41.95 4.26
2966 6557 2.624674 ATTTGAAGGCCCGCCGCTAT 62.625 55.000 0.00 0.00 41.95 2.97
2967 6558 2.830186 TTTGAAGGCCCGCCGCTATT 62.830 55.000 0.00 0.00 41.95 1.73
2968 6559 2.516225 GAAGGCCCGCCGCTATTT 60.516 61.111 0.00 0.00 41.95 1.40
2969 6560 2.044352 AAGGCCCGCCGCTATTTT 60.044 55.556 0.00 0.00 41.95 1.82
2970 6561 2.060004 GAAGGCCCGCCGCTATTTTC 62.060 60.000 0.00 0.00 41.95 2.29
2971 6562 3.592814 GGCCCGCCGCTATTTTCC 61.593 66.667 0.00 0.00 37.74 3.13
2972 6563 2.826738 GCCCGCCGCTATTTTCCA 60.827 61.111 0.00 0.00 0.00 3.53
2973 6564 2.193536 GCCCGCCGCTATTTTCCAT 61.194 57.895 0.00 0.00 0.00 3.41
2974 6565 0.887387 GCCCGCCGCTATTTTCCATA 60.887 55.000 0.00 0.00 0.00 2.74
2975 6566 1.156736 CCCGCCGCTATTTTCCATAG 58.843 55.000 0.00 0.00 0.00 2.23
2976 6567 0.517316 CCGCCGCTATTTTCCATAGC 59.483 55.000 4.08 4.08 42.53 2.97
2977 6568 0.517316 CGCCGCTATTTTCCATAGCC 59.483 55.000 8.01 0.00 42.89 3.93
2978 6569 0.881796 GCCGCTATTTTCCATAGCCC 59.118 55.000 8.01 0.00 42.89 5.19
2979 6570 1.545651 GCCGCTATTTTCCATAGCCCT 60.546 52.381 8.01 0.00 42.89 5.19
2980 6571 2.427506 CCGCTATTTTCCATAGCCCTC 58.572 52.381 8.01 0.00 42.89 4.30
2981 6572 2.039084 CCGCTATTTTCCATAGCCCTCT 59.961 50.000 8.01 0.00 42.89 3.69
2982 6573 3.260884 CCGCTATTTTCCATAGCCCTCTA 59.739 47.826 8.01 0.00 42.89 2.43
2983 6574 4.080863 CCGCTATTTTCCATAGCCCTCTAT 60.081 45.833 8.01 0.00 42.89 1.98
2984 6575 5.491982 CGCTATTTTCCATAGCCCTCTATT 58.508 41.667 8.01 0.00 42.89 1.73
2985 6576 5.940470 CGCTATTTTCCATAGCCCTCTATTT 59.060 40.000 8.01 0.00 42.89 1.40
2986 6577 7.103641 CGCTATTTTCCATAGCCCTCTATTTA 58.896 38.462 8.01 0.00 42.89 1.40
2987 6578 7.606456 CGCTATTTTCCATAGCCCTCTATTTAA 59.394 37.037 8.01 0.00 42.89 1.52
2988 6579 9.297037 GCTATTTTCCATAGCCCTCTATTTAAA 57.703 33.333 2.88 0.00 40.69 1.52
2991 6582 8.887264 TTTTCCATAGCCCTCTATTTAAAACA 57.113 30.769 0.00 0.00 33.37 2.83
2992 6583 9.487442 TTTTCCATAGCCCTCTATTTAAAACAT 57.513 29.630 0.00 0.00 33.37 2.71
2995 6586 9.793259 TCCATAGCCCTCTATTTAAAACATAAG 57.207 33.333 0.00 0.00 33.37 1.73
2996 6587 9.793259 CCATAGCCCTCTATTTAAAACATAAGA 57.207 33.333 0.00 0.00 33.37 2.10
3012 6603 6.186420 ACATAAGAAAAATTGGGCAAAGGT 57.814 33.333 0.00 0.00 0.00 3.50
3017 6608 2.524569 AAATTGGGCAAAGGTTGACG 57.475 45.000 0.00 0.00 40.53 4.35
3056 6647 0.645355 ATTTCGTACTGCATGCGTCG 59.355 50.000 14.09 16.92 37.71 5.12
3074 6665 4.296690 CGTCGAATAACATACTCCTTCCC 58.703 47.826 0.00 0.00 0.00 3.97
3075 6666 4.037684 CGTCGAATAACATACTCCTTCCCT 59.962 45.833 0.00 0.00 0.00 4.20
3077 6668 5.302313 GTCGAATAACATACTCCTTCCCTCT 59.698 44.000 0.00 0.00 0.00 3.69
3080 6671 6.015010 CGAATAACATACTCCTTCCCTCTCAT 60.015 42.308 0.00 0.00 0.00 2.90
3088 6679 9.928618 CATACTCCTTCCCTCTCATAATATAGA 57.071 37.037 0.00 0.00 0.00 1.98
3090 6681 8.893563 ACTCCTTCCCTCTCATAATATAGAAG 57.106 38.462 0.00 0.00 0.00 2.85
3093 6684 7.903481 TCCTTCCCTCTCATAATATAGAAGCAT 59.097 37.037 0.00 0.00 0.00 3.79
3112 6703 7.803189 AGAAGCATTTTTGACACTATTGTAACG 59.197 33.333 0.00 0.00 35.47 3.18
3116 6707 7.617122 GCATTTTTGACACTATTGTAACGCTTG 60.617 37.037 0.00 0.00 35.47 4.01
3135 6726 4.632153 CTTGTATTACGGGATGAAGGGAG 58.368 47.826 0.00 0.00 0.00 4.30
3136 6727 3.649843 TGTATTACGGGATGAAGGGAGT 58.350 45.455 0.00 0.00 0.00 3.85
3174 6765 5.998363 AGTAAGTTCATTCAAGACCTCCAAC 59.002 40.000 0.00 0.00 0.00 3.77
3177 6768 1.697432 TCATTCAAGACCTCCAACCGT 59.303 47.619 0.00 0.00 0.00 4.83
3211 6802 9.928618 TCCAAGTAAATTTATATTGGGTCATCA 57.071 29.630 27.82 15.31 40.65 3.07
3249 6840 3.895041 CCTCCTCTAGGATCTTCCTCAAC 59.105 52.174 0.00 0.00 45.66 3.18
3258 6849 0.249868 TCTTCCTCAACAGTGTGCCG 60.250 55.000 0.00 0.00 0.00 5.69
3261 6852 3.357079 CTCAACAGTGTGCCGGGC 61.357 66.667 13.32 13.32 0.00 6.13
3325 6917 2.345991 GCTAACCACGTCAGCCCA 59.654 61.111 0.00 0.00 0.00 5.36
3326 6918 2.033194 GCTAACCACGTCAGCCCAC 61.033 63.158 0.00 0.00 0.00 4.61
3327 6919 1.736645 CTAACCACGTCAGCCCACG 60.737 63.158 3.57 3.57 45.65 4.94
3328 6920 2.149803 CTAACCACGTCAGCCCACGA 62.150 60.000 11.74 0.00 42.69 4.35
3329 6921 2.149803 TAACCACGTCAGCCCACGAG 62.150 60.000 11.74 3.99 42.69 4.18
3391 6983 2.673610 GCCGCACTTTTGGAAATATGCA 60.674 45.455 0.00 0.00 31.97 3.96
3490 7084 0.798776 CTGGAATATGCGATTCGGCC 59.201 55.000 8.34 0.00 0.00 6.13
3580 7178 4.389992 AGCTCAAGTGTTGTATGTTGATCG 59.610 41.667 0.00 0.00 0.00 3.69
3618 7217 9.350357 TCTTGAGATATTGTTAAGTGTAACGAC 57.650 33.333 0.00 0.00 45.86 4.34
3942 7551 6.044411 TGGAGAGATATTCTTAGGGTCCTT 57.956 41.667 0.00 0.00 35.87 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 178 6.460676 CCCTAAGGTAATACGTGAACCTGTAG 60.461 46.154 16.20 16.61 42.86 2.74
190 191 5.482878 GGATCGGACAATCCCTAAGGTAATA 59.517 44.000 0.00 0.00 39.53 0.98
303 306 2.290367 CACAAGAACGCCTTTGACATCA 59.710 45.455 1.07 0.00 31.42 3.07
306 309 1.021202 CCACAAGAACGCCTTTGACA 58.979 50.000 1.07 0.00 31.42 3.58
486 489 9.710900 AAGGTAGGATTTCAATTCAAATTTGAC 57.289 29.630 20.35 6.51 36.83 3.18
664 667 1.045350 CGGGAGGAGAGCAGATGGAA 61.045 60.000 0.00 0.00 0.00 3.53
896 900 7.141502 GCTATTCCATAGTATTCCGGAGGGG 62.142 52.000 3.34 0.00 41.09 4.79
897 901 4.141914 GCTATTCCATAGTATTCCGGAGGG 60.142 50.000 3.34 0.00 41.09 4.30
898 902 4.466370 TGCTATTCCATAGTATTCCGGAGG 59.534 45.833 3.34 0.00 41.72 4.30
899 903 5.186021 ACTGCTATTCCATAGTATTCCGGAG 59.814 44.000 3.34 0.00 35.29 4.63
900 904 5.084519 ACTGCTATTCCATAGTATTCCGGA 58.915 41.667 0.00 0.00 35.29 5.14
901 905 5.047306 TGACTGCTATTCCATAGTATTCCGG 60.047 44.000 0.00 0.00 35.29 5.14
902 906 6.025749 TGACTGCTATTCCATAGTATTCCG 57.974 41.667 0.00 0.00 35.29 4.30
903 907 7.093992 GTCTGACTGCTATTCCATAGTATTCC 58.906 42.308 0.00 0.00 35.29 3.01
904 908 6.804295 CGTCTGACTGCTATTCCATAGTATTC 59.196 42.308 6.21 0.00 35.29 1.75
905 909 6.682746 CGTCTGACTGCTATTCCATAGTATT 58.317 40.000 6.21 0.00 35.29 1.89
906 910 5.336055 GCGTCTGACTGCTATTCCATAGTAT 60.336 44.000 14.37 0.00 35.29 2.12
907 911 4.023107 GCGTCTGACTGCTATTCCATAGTA 60.023 45.833 14.37 0.00 35.29 1.82
908 912 3.243569 GCGTCTGACTGCTATTCCATAGT 60.244 47.826 14.37 0.00 35.29 2.12
909 913 3.005261 AGCGTCTGACTGCTATTCCATAG 59.995 47.826 20.07 0.00 40.28 2.23
910 914 2.959030 AGCGTCTGACTGCTATTCCATA 59.041 45.455 20.07 0.00 40.28 2.74
911 915 1.759445 AGCGTCTGACTGCTATTCCAT 59.241 47.619 20.07 1.54 40.28 3.41
912 916 1.135139 GAGCGTCTGACTGCTATTCCA 59.865 52.381 21.00 0.00 42.60 3.53
913 917 1.537135 GGAGCGTCTGACTGCTATTCC 60.537 57.143 21.00 16.18 42.60 3.01
914 918 1.846541 GGAGCGTCTGACTGCTATTC 58.153 55.000 21.00 12.51 42.60 1.75
915 919 0.101399 CGGAGCGTCTGACTGCTATT 59.899 55.000 21.00 6.04 42.60 1.73
916 920 1.729470 CCGGAGCGTCTGACTGCTAT 61.729 60.000 21.00 6.61 42.60 2.97
917 921 2.407428 CCGGAGCGTCTGACTGCTA 61.407 63.158 21.00 0.00 42.60 3.49
918 922 3.753434 CCGGAGCGTCTGACTGCT 61.753 66.667 21.07 21.07 45.90 4.24
919 923 2.564553 ATTCCGGAGCGTCTGACTGC 62.565 60.000 3.34 13.97 0.00 4.40
920 924 0.803768 CATTCCGGAGCGTCTGACTG 60.804 60.000 3.34 1.03 0.00 3.51
921 925 1.251527 ACATTCCGGAGCGTCTGACT 61.252 55.000 3.34 0.00 0.00 3.41
922 926 0.454600 TACATTCCGGAGCGTCTGAC 59.545 55.000 3.34 0.00 0.00 3.51
923 927 0.738975 CTACATTCCGGAGCGTCTGA 59.261 55.000 3.34 0.00 0.00 3.27
924 928 0.738975 TCTACATTCCGGAGCGTCTG 59.261 55.000 3.34 1.41 0.00 3.51
925 929 1.693627 ATCTACATTCCGGAGCGTCT 58.306 50.000 3.34 0.00 0.00 4.18
926 930 2.812591 TCTATCTACATTCCGGAGCGTC 59.187 50.000 3.34 0.00 0.00 5.19
927 931 2.860009 TCTATCTACATTCCGGAGCGT 58.140 47.619 3.34 8.75 0.00 5.07
928 932 3.917329 TTCTATCTACATTCCGGAGCG 57.083 47.619 3.34 1.87 0.00 5.03
929 933 5.203060 AGTTTCTATCTACATTCCGGAGC 57.797 43.478 3.34 0.00 0.00 4.70
930 934 5.008811 ACGAGTTTCTATCTACATTCCGGAG 59.991 44.000 3.34 0.00 0.00 4.63
931 935 4.885907 ACGAGTTTCTATCTACATTCCGGA 59.114 41.667 0.00 0.00 0.00 5.14
932 936 4.976731 CACGAGTTTCTATCTACATTCCGG 59.023 45.833 0.00 0.00 0.00 5.14
933 937 4.976731 CCACGAGTTTCTATCTACATTCCG 59.023 45.833 0.00 0.00 0.00 4.30
934 938 4.745620 GCCACGAGTTTCTATCTACATTCC 59.254 45.833 0.00 0.00 0.00 3.01
935 939 5.593010 AGCCACGAGTTTCTATCTACATTC 58.407 41.667 0.00 0.00 0.00 2.67
936 940 5.599999 AGCCACGAGTTTCTATCTACATT 57.400 39.130 0.00 0.00 0.00 2.71
937 941 5.599999 AAGCCACGAGTTTCTATCTACAT 57.400 39.130 0.00 0.00 0.00 2.29
938 942 5.401531 AAAGCCACGAGTTTCTATCTACA 57.598 39.130 0.00 0.00 0.00 2.74
989 993 1.622607 CCTTCCTGGTATGGCCGACA 61.623 60.000 9.63 0.00 41.21 4.35
997 1011 3.782523 TCTTGCTTGATCCTTCCTGGTAT 59.217 43.478 0.00 0.00 37.07 2.73
1007 1021 1.334243 GCTGCTCATCTTGCTTGATCC 59.666 52.381 0.00 0.00 0.00 3.36
1217 1242 4.699522 GCGGCCGAAGAAGGTGGT 62.700 66.667 33.48 0.00 0.00 4.16
1394 1419 0.035056 ATCCGACCCCAAGCAAAGAG 60.035 55.000 0.00 0.00 0.00 2.85
1641 1672 2.930682 GAGAATTAGAGTTGGACCACGC 59.069 50.000 0.00 0.00 0.00 5.34
1642 1673 4.188247 TGAGAATTAGAGTTGGACCACG 57.812 45.455 0.00 0.00 0.00 4.94
1663 1694 8.027771 GCCTTTGCGTAGTACTATATATGACTT 58.972 37.037 5.75 0.00 0.00 3.01
1673 1704 7.888424 TGAATATATGCCTTTGCGTAGTACTA 58.112 34.615 0.00 0.00 42.05 1.82
1732 1763 1.845809 CTGTTGCCTTGTCACTCCGC 61.846 60.000 0.00 0.00 0.00 5.54
1734 1765 2.191128 ATCTGTTGCCTTGTCACTCC 57.809 50.000 0.00 0.00 0.00 3.85
1948 1979 4.389890 AACAGCTTGCTTTGTTGATGAA 57.610 36.364 0.00 0.00 36.26 2.57
2009 2040 9.724839 GCTTGGTTCGTTGCTTTATAATATAAA 57.275 29.630 5.46 5.46 0.00 1.40
2010 2041 8.894731 TGCTTGGTTCGTTGCTTTATAATATAA 58.105 29.630 0.00 0.00 0.00 0.98
2011 2042 8.439993 TGCTTGGTTCGTTGCTTTATAATATA 57.560 30.769 0.00 0.00 0.00 0.86
2012 2043 7.328277 TGCTTGGTTCGTTGCTTTATAATAT 57.672 32.000 0.00 0.00 0.00 1.28
2013 2044 6.745159 TGCTTGGTTCGTTGCTTTATAATA 57.255 33.333 0.00 0.00 0.00 0.98
2014 2045 5.637006 TGCTTGGTTCGTTGCTTTATAAT 57.363 34.783 0.00 0.00 0.00 1.28
2015 2046 5.392595 GGATGCTTGGTTCGTTGCTTTATAA 60.393 40.000 0.00 0.00 0.00 0.98
2016 2047 4.095782 GGATGCTTGGTTCGTTGCTTTATA 59.904 41.667 0.00 0.00 0.00 0.98
2017 2048 3.119495 GGATGCTTGGTTCGTTGCTTTAT 60.119 43.478 0.00 0.00 0.00 1.40
2018 2049 2.227865 GGATGCTTGGTTCGTTGCTTTA 59.772 45.455 0.00 0.00 0.00 1.85
2019 2050 1.000274 GGATGCTTGGTTCGTTGCTTT 60.000 47.619 0.00 0.00 0.00 3.51
2020 2051 0.598065 GGATGCTTGGTTCGTTGCTT 59.402 50.000 0.00 0.00 0.00 3.91
2021 2052 0.537143 TGGATGCTTGGTTCGTTGCT 60.537 50.000 0.00 0.00 0.00 3.91
2022 2053 0.313672 TTGGATGCTTGGTTCGTTGC 59.686 50.000 0.00 0.00 0.00 4.17
2023 2054 1.336440 TGTTGGATGCTTGGTTCGTTG 59.664 47.619 0.00 0.00 0.00 4.10
2024 2055 1.336755 GTGTTGGATGCTTGGTTCGTT 59.663 47.619 0.00 0.00 0.00 3.85
2025 2056 0.951558 GTGTTGGATGCTTGGTTCGT 59.048 50.000 0.00 0.00 0.00 3.85
2026 2057 0.950836 TGTGTTGGATGCTTGGTTCG 59.049 50.000 0.00 0.00 0.00 3.95
2027 2058 2.100584 TGTTGTGTTGGATGCTTGGTTC 59.899 45.455 0.00 0.00 0.00 3.62
2028 2059 2.101249 CTGTTGTGTTGGATGCTTGGTT 59.899 45.455 0.00 0.00 0.00 3.67
2029 2060 1.682854 CTGTTGTGTTGGATGCTTGGT 59.317 47.619 0.00 0.00 0.00 3.67
2030 2061 1.682854 ACTGTTGTGTTGGATGCTTGG 59.317 47.619 0.00 0.00 0.00 3.61
2031 2062 3.314913 TGTACTGTTGTGTTGGATGCTTG 59.685 43.478 0.00 0.00 0.00 4.01
2032 2063 3.550820 TGTACTGTTGTGTTGGATGCTT 58.449 40.909 0.00 0.00 0.00 3.91
2033 2064 3.207265 TGTACTGTTGTGTTGGATGCT 57.793 42.857 0.00 0.00 0.00 3.79
2034 2065 3.980646 TTGTACTGTTGTGTTGGATGC 57.019 42.857 0.00 0.00 0.00 3.91
2035 2066 7.421599 TGTATTTTGTACTGTTGTGTTGGATG 58.578 34.615 0.00 0.00 0.00 3.51
2036 2067 7.575414 TGTATTTTGTACTGTTGTGTTGGAT 57.425 32.000 0.00 0.00 0.00 3.41
2037 2068 7.392494 TTGTATTTTGTACTGTTGTGTTGGA 57.608 32.000 0.00 0.00 0.00 3.53
2038 2069 7.918033 TGATTGTATTTTGTACTGTTGTGTTGG 59.082 33.333 0.00 0.00 0.00 3.77
2039 2070 8.848948 TGATTGTATTTTGTACTGTTGTGTTG 57.151 30.769 0.00 0.00 0.00 3.33
2040 2071 9.515020 CTTGATTGTATTTTGTACTGTTGTGTT 57.485 29.630 0.00 0.00 0.00 3.32
2041 2072 8.682710 ACTTGATTGTATTTTGTACTGTTGTGT 58.317 29.630 0.00 0.00 0.00 3.72
2042 2073 9.169468 GACTTGATTGTATTTTGTACTGTTGTG 57.831 33.333 0.00 0.00 0.00 3.33
2043 2074 8.898761 TGACTTGATTGTATTTTGTACTGTTGT 58.101 29.630 0.00 0.00 0.00 3.32
2044 2075 9.897744 ATGACTTGATTGTATTTTGTACTGTTG 57.102 29.630 0.00 0.00 0.00 3.33
2051 2082 9.725019 TGACTCTATGACTTGATTGTATTTTGT 57.275 29.630 0.00 0.00 0.00 2.83
2052 2083 9.979270 GTGACTCTATGACTTGATTGTATTTTG 57.021 33.333 0.00 0.00 0.00 2.44
2053 2084 8.873830 CGTGACTCTATGACTTGATTGTATTTT 58.126 33.333 0.00 0.00 0.00 1.82
2054 2085 7.010552 GCGTGACTCTATGACTTGATTGTATTT 59.989 37.037 0.00 0.00 0.00 1.40
2055 2086 6.477033 GCGTGACTCTATGACTTGATTGTATT 59.523 38.462 0.00 0.00 0.00 1.89
2056 2087 5.980116 GCGTGACTCTATGACTTGATTGTAT 59.020 40.000 0.00 0.00 0.00 2.29
2057 2088 5.125578 AGCGTGACTCTATGACTTGATTGTA 59.874 40.000 0.00 0.00 0.00 2.41
2058 2089 4.081972 AGCGTGACTCTATGACTTGATTGT 60.082 41.667 0.00 0.00 0.00 2.71
2059 2090 4.267214 CAGCGTGACTCTATGACTTGATTG 59.733 45.833 0.00 0.00 0.00 2.67
2060 2091 4.428209 CAGCGTGACTCTATGACTTGATT 58.572 43.478 0.00 0.00 0.00 2.57
2061 2092 3.181482 CCAGCGTGACTCTATGACTTGAT 60.181 47.826 0.00 0.00 0.00 2.57
2062 2093 2.164422 CCAGCGTGACTCTATGACTTGA 59.836 50.000 0.00 0.00 0.00 3.02
2063 2094 2.534298 CCAGCGTGACTCTATGACTTG 58.466 52.381 0.00 0.00 0.00 3.16
2064 2095 1.478510 CCCAGCGTGACTCTATGACTT 59.521 52.381 0.00 0.00 0.00 3.01
2065 2096 1.107114 CCCAGCGTGACTCTATGACT 58.893 55.000 0.00 0.00 0.00 3.41
2066 2097 0.103208 CCCCAGCGTGACTCTATGAC 59.897 60.000 0.00 0.00 0.00 3.06
2067 2098 1.043116 CCCCCAGCGTGACTCTATGA 61.043 60.000 0.00 0.00 0.00 2.15
2068 2099 1.443407 CCCCCAGCGTGACTCTATG 59.557 63.158 0.00 0.00 0.00 2.23
2069 2100 2.435693 GCCCCCAGCGTGACTCTAT 61.436 63.158 0.00 0.00 0.00 1.98
2070 2101 3.075005 GCCCCCAGCGTGACTCTA 61.075 66.667 0.00 0.00 0.00 2.43
2080 2111 2.674380 GTCTTGCTGTGCCCCCAG 60.674 66.667 0.00 0.00 35.49 4.45
2081 2112 2.981914 CTTGTCTTGCTGTGCCCCCA 62.982 60.000 0.00 0.00 0.00 4.96
2082 2113 2.203480 TTGTCTTGCTGTGCCCCC 60.203 61.111 0.00 0.00 0.00 5.40
2083 2114 2.924105 GCTTGTCTTGCTGTGCCCC 61.924 63.158 0.00 0.00 0.00 5.80
2084 2115 2.647297 GCTTGTCTTGCTGTGCCC 59.353 61.111 0.00 0.00 0.00 5.36
2085 2116 2.647297 GGCTTGTCTTGCTGTGCC 59.353 61.111 0.00 0.00 0.00 5.01
2086 2117 1.737355 TTGGGCTTGTCTTGCTGTGC 61.737 55.000 0.00 0.00 0.00 4.57
2087 2118 0.313043 CTTGGGCTTGTCTTGCTGTG 59.687 55.000 0.00 0.00 0.00 3.66
2088 2119 0.825010 CCTTGGGCTTGTCTTGCTGT 60.825 55.000 0.00 0.00 0.00 4.40
2089 2120 0.538057 TCCTTGGGCTTGTCTTGCTG 60.538 55.000 0.00 0.00 0.00 4.41
2090 2121 0.185901 TTCCTTGGGCTTGTCTTGCT 59.814 50.000 0.00 0.00 0.00 3.91
2091 2122 1.039856 TTTCCTTGGGCTTGTCTTGC 58.960 50.000 0.00 0.00 0.00 4.01
2092 2123 2.695147 AGTTTTCCTTGGGCTTGTCTTG 59.305 45.455 0.00 0.00 0.00 3.02
2093 2124 3.032265 AGTTTTCCTTGGGCTTGTCTT 57.968 42.857 0.00 0.00 0.00 3.01
2094 2125 2.755952 AGTTTTCCTTGGGCTTGTCT 57.244 45.000 0.00 0.00 0.00 3.41
2095 2126 4.500887 GGTTTAGTTTTCCTTGGGCTTGTC 60.501 45.833 0.00 0.00 0.00 3.18
2096 2127 3.386726 GGTTTAGTTTTCCTTGGGCTTGT 59.613 43.478 0.00 0.00 0.00 3.16
2097 2128 3.641436 AGGTTTAGTTTTCCTTGGGCTTG 59.359 43.478 0.00 0.00 0.00 4.01
2098 2129 3.923648 AGGTTTAGTTTTCCTTGGGCTT 58.076 40.909 0.00 0.00 0.00 4.35
2099 2130 3.612795 AGGTTTAGTTTTCCTTGGGCT 57.387 42.857 0.00 0.00 0.00 5.19
2100 2131 4.344102 AGAAAGGTTTAGTTTTCCTTGGGC 59.656 41.667 0.00 0.00 40.80 5.36
2101 2132 6.479972 AAGAAAGGTTTAGTTTTCCTTGGG 57.520 37.500 0.00 0.00 40.80 4.12
2102 2133 7.327975 ACAAAGAAAGGTTTAGTTTTCCTTGG 58.672 34.615 10.99 0.00 40.80 3.61
2103 2134 9.297586 GTACAAAGAAAGGTTTAGTTTTCCTTG 57.702 33.333 6.71 6.71 40.80 3.61
2104 2135 9.251440 AGTACAAAGAAAGGTTTAGTTTTCCTT 57.749 29.630 0.00 0.00 42.47 3.36
2105 2136 8.818622 AGTACAAAGAAAGGTTTAGTTTTCCT 57.181 30.769 0.00 0.00 34.60 3.36
2106 2137 9.297586 CAAGTACAAAGAAAGGTTTAGTTTTCC 57.702 33.333 0.00 0.00 34.60 3.13
2110 2141 9.850628 GTTTCAAGTACAAAGAAAGGTTTAGTT 57.149 29.630 7.39 0.00 32.48 2.24
2111 2142 9.016438 TGTTTCAAGTACAAAGAAAGGTTTAGT 57.984 29.630 7.39 0.00 32.48 2.24
2112 2143 9.503427 CTGTTTCAAGTACAAAGAAAGGTTTAG 57.497 33.333 7.39 1.10 32.48 1.85
2113 2144 9.233649 TCTGTTTCAAGTACAAAGAAAGGTTTA 57.766 29.630 7.39 0.00 32.48 2.01
2114 2145 8.117813 TCTGTTTCAAGTACAAAGAAAGGTTT 57.882 30.769 7.39 0.00 32.48 3.27
2115 2146 7.148069 CCTCTGTTTCAAGTACAAAGAAAGGTT 60.148 37.037 7.39 0.00 32.48 3.50
2116 2147 6.318900 CCTCTGTTTCAAGTACAAAGAAAGGT 59.681 38.462 7.39 0.00 32.48 3.50
2117 2148 6.729187 CCTCTGTTTCAAGTACAAAGAAAGG 58.271 40.000 7.39 3.20 32.48 3.11
2118 2149 6.038714 AGCCTCTGTTTCAAGTACAAAGAAAG 59.961 38.462 7.39 0.00 32.48 2.62
2119 2150 5.885912 AGCCTCTGTTTCAAGTACAAAGAAA 59.114 36.000 0.00 0.00 0.00 2.52
2120 2151 5.437060 AGCCTCTGTTTCAAGTACAAAGAA 58.563 37.500 0.00 0.00 0.00 2.52
2121 2152 5.036117 AGCCTCTGTTTCAAGTACAAAGA 57.964 39.130 0.00 0.00 0.00 2.52
2122 2153 4.816385 TGAGCCTCTGTTTCAAGTACAAAG 59.184 41.667 0.00 0.00 0.00 2.77
2123 2154 4.776349 TGAGCCTCTGTTTCAAGTACAAA 58.224 39.130 0.00 0.00 0.00 2.83
2124 2155 4.415881 TGAGCCTCTGTTTCAAGTACAA 57.584 40.909 0.00 0.00 0.00 2.41
2125 2156 4.040339 TGATGAGCCTCTGTTTCAAGTACA 59.960 41.667 0.00 0.00 0.00 2.90
2126 2157 4.569943 TGATGAGCCTCTGTTTCAAGTAC 58.430 43.478 0.00 0.00 0.00 2.73
2127 2158 4.890158 TGATGAGCCTCTGTTTCAAGTA 57.110 40.909 0.00 0.00 0.00 2.24
2224 2262 3.026630 TGTTGTACTCTTCGAGGCAAG 57.973 47.619 0.00 0.00 32.66 4.01
2232 2270 3.834610 TCGCTAGCTTGTTGTACTCTTC 58.165 45.455 13.93 0.00 0.00 2.87
2334 2373 2.591715 CCATGACGGGGCCGAATC 60.592 66.667 0.00 0.00 42.83 2.52
2416 2455 3.450457 GGCCCACATCATTTAAACATGGA 59.550 43.478 11.76 0.23 0.00 3.41
2417 2456 3.737663 CGGCCCACATCATTTAAACATGG 60.738 47.826 0.00 6.16 0.00 3.66
2419 2458 2.430332 CCGGCCCACATCATTTAAACAT 59.570 45.455 0.00 0.00 0.00 2.71
2426 3488 1.077501 CTCACCGGCCCACATCATT 60.078 57.895 0.00 0.00 0.00 2.57
2430 3492 2.308722 AATCCTCACCGGCCCACAT 61.309 57.895 0.00 0.00 0.00 3.21
2435 3497 0.600255 CGATACAATCCTCACCGGCC 60.600 60.000 0.00 0.00 0.00 6.13
2453 3515 0.791983 CTGCAAAGTCGCAAGCATCG 60.792 55.000 0.00 0.00 42.45 3.84
2709 6300 5.163163 CCTCCATCCTGATTTATTGACCAGA 60.163 44.000 0.00 0.00 0.00 3.86
2715 6306 8.195165 TCTACTACCTCCATCCTGATTTATTG 57.805 38.462 0.00 0.00 0.00 1.90
2771 6362 4.316645 CAATCCACATAGCTCTCCATCAG 58.683 47.826 0.00 0.00 0.00 2.90
2772 6363 3.495629 GCAATCCACATAGCTCTCCATCA 60.496 47.826 0.00 0.00 0.00 3.07
2773 6364 3.072944 GCAATCCACATAGCTCTCCATC 58.927 50.000 0.00 0.00 0.00 3.51
2774 6365 2.440627 TGCAATCCACATAGCTCTCCAT 59.559 45.455 0.00 0.00 0.00 3.41
2844 6435 9.374838 GCTATAGCCGGCTATTTAAAACTATAA 57.625 33.333 44.65 25.48 39.65 0.98
2845 6436 8.755977 AGCTATAGCCGGCTATTTAAAACTATA 58.244 33.333 44.65 25.94 43.38 1.31
2846 6437 7.621796 AGCTATAGCCGGCTATTTAAAACTAT 58.378 34.615 44.65 26.21 43.38 2.12
2847 6438 7.001099 AGCTATAGCCGGCTATTTAAAACTA 57.999 36.000 44.65 27.23 43.38 2.24
2848 6439 5.866207 AGCTATAGCCGGCTATTTAAAACT 58.134 37.500 44.65 29.88 43.38 2.66
2849 6440 6.555812 AAGCTATAGCCGGCTATTTAAAAC 57.444 37.500 44.65 28.54 43.38 2.43
2850 6441 5.407387 CGAAGCTATAGCCGGCTATTTAAAA 59.593 40.000 44.65 29.19 43.38 1.52
2851 6442 4.927425 CGAAGCTATAGCCGGCTATTTAAA 59.073 41.667 44.65 29.52 43.38 1.52
2852 6443 4.491676 CGAAGCTATAGCCGGCTATTTAA 58.508 43.478 44.65 29.85 43.38 1.52
2853 6444 4.106029 CGAAGCTATAGCCGGCTATTTA 57.894 45.455 44.65 30.51 43.38 1.40
2854 6445 2.960819 CGAAGCTATAGCCGGCTATTT 58.039 47.619 44.65 34.49 43.38 1.40
2855 6446 2.656560 CGAAGCTATAGCCGGCTATT 57.343 50.000 44.65 31.63 43.38 1.73
2869 6460 0.173708 ATAGCGGGCTATAGCGAAGC 59.826 55.000 22.13 22.13 42.31 3.86
2870 6461 3.341857 CTATAGCGGGCTATAGCGAAG 57.658 52.381 26.16 12.52 46.26 3.79
2876 6467 4.903045 AAAAAGGCTATAGCGGGCTATA 57.097 40.909 18.30 17.02 43.26 1.31
2877 6468 3.790089 AAAAAGGCTATAGCGGGCTAT 57.210 42.857 18.30 16.61 43.26 2.97
2878 6469 3.644738 ACTAAAAAGGCTATAGCGGGCTA 59.355 43.478 18.30 2.42 43.26 3.93
2879 6470 2.438392 ACTAAAAAGGCTATAGCGGGCT 59.562 45.455 18.30 7.37 43.26 5.19
2880 6471 2.847441 ACTAAAAAGGCTATAGCGGGC 58.153 47.619 18.30 5.04 43.26 6.13
2881 6472 4.562963 CCCTACTAAAAAGGCTATAGCGGG 60.563 50.000 18.30 14.29 43.26 6.13
2882 6473 4.040095 ACCCTACTAAAAAGGCTATAGCGG 59.960 45.833 18.30 11.24 43.26 5.52
2883 6474 4.989168 CACCCTACTAAAAAGGCTATAGCG 59.011 45.833 18.30 5.39 43.26 4.26
2884 6475 4.755629 GCACCCTACTAAAAAGGCTATAGC 59.244 45.833 16.78 16.78 41.14 2.97
2885 6476 5.306394 GGCACCCTACTAAAAAGGCTATAG 58.694 45.833 0.00 0.00 32.34 1.31
2886 6477 4.202284 CGGCACCCTACTAAAAAGGCTATA 60.202 45.833 0.00 0.00 32.34 1.31
2887 6478 3.433173 CGGCACCCTACTAAAAAGGCTAT 60.433 47.826 0.00 0.00 32.34 2.97
2888 6479 2.093341 CGGCACCCTACTAAAAAGGCTA 60.093 50.000 0.00 0.00 32.34 3.93
2889 6480 1.339727 CGGCACCCTACTAAAAAGGCT 60.340 52.381 0.00 0.00 32.34 4.58
2890 6481 1.092348 CGGCACCCTACTAAAAAGGC 58.908 55.000 0.00 0.00 32.34 4.35
2891 6482 1.092348 GCGGCACCCTACTAAAAAGG 58.908 55.000 0.00 0.00 0.00 3.11
2892 6483 2.109425 AGCGGCACCCTACTAAAAAG 57.891 50.000 1.45 0.00 0.00 2.27
2893 6484 3.699411 TTAGCGGCACCCTACTAAAAA 57.301 42.857 1.45 0.00 0.00 1.94
2894 6485 3.699411 TTTAGCGGCACCCTACTAAAA 57.301 42.857 1.45 0.00 31.57 1.52
2895 6486 3.537580 CATTTAGCGGCACCCTACTAAA 58.462 45.455 1.45 0.00 35.69 1.85
2896 6487 2.158871 CCATTTAGCGGCACCCTACTAA 60.159 50.000 1.45 0.00 0.00 2.24
2897 6488 1.414919 CCATTTAGCGGCACCCTACTA 59.585 52.381 1.45 0.00 0.00 1.82
2898 6489 0.180406 CCATTTAGCGGCACCCTACT 59.820 55.000 1.45 0.00 0.00 2.57
2899 6490 0.107361 ACCATTTAGCGGCACCCTAC 60.107 55.000 1.45 0.00 0.00 3.18
2900 6491 0.179468 GACCATTTAGCGGCACCCTA 59.821 55.000 1.45 0.00 0.00 3.53
2901 6492 1.077716 GACCATTTAGCGGCACCCT 60.078 57.895 1.45 0.00 0.00 4.34
2902 6493 2.469516 CGACCATTTAGCGGCACCC 61.470 63.158 1.45 0.00 0.00 4.61
2903 6494 3.098555 CGACCATTTAGCGGCACC 58.901 61.111 1.45 0.00 0.00 5.01
2904 6495 2.403586 GCGACCATTTAGCGGCAC 59.596 61.111 1.45 0.00 0.00 5.01
2907 6498 0.742990 TGAAGGCGACCATTTAGCGG 60.743 55.000 0.00 0.00 0.00 5.52
2908 6499 0.373716 GTGAAGGCGACCATTTAGCG 59.626 55.000 0.00 0.00 0.00 4.26
2909 6500 1.448985 TGTGAAGGCGACCATTTAGC 58.551 50.000 0.00 0.00 0.00 3.09
2910 6501 4.701956 ATTTGTGAAGGCGACCATTTAG 57.298 40.909 0.00 0.00 0.00 1.85
2911 6502 4.095782 GCTATTTGTGAAGGCGACCATTTA 59.904 41.667 0.00 0.00 0.00 1.40
2912 6503 3.119495 GCTATTTGTGAAGGCGACCATTT 60.119 43.478 0.00 0.00 0.00 2.32
2913 6504 2.423538 GCTATTTGTGAAGGCGACCATT 59.576 45.455 0.00 0.00 0.00 3.16
2914 6505 2.017049 GCTATTTGTGAAGGCGACCAT 58.983 47.619 0.00 0.00 0.00 3.55
2915 6506 1.448985 GCTATTTGTGAAGGCGACCA 58.551 50.000 0.00 0.00 0.00 4.02
2916 6507 0.733150 GGCTATTTGTGAAGGCGACC 59.267 55.000 0.00 0.00 0.00 4.79
2917 6508 0.733150 GGGCTATTTGTGAAGGCGAC 59.267 55.000 0.00 0.00 39.08 5.19
2918 6509 0.742990 CGGGCTATTTGTGAAGGCGA 60.743 55.000 0.00 0.00 39.08 5.54
2919 6510 1.721487 CGGGCTATTTGTGAAGGCG 59.279 57.895 0.00 0.00 39.08 5.52
2920 6511 1.032114 AGCGGGCTATTTGTGAAGGC 61.032 55.000 0.00 0.00 37.55 4.35
2921 6512 2.325583 TAGCGGGCTATTTGTGAAGG 57.674 50.000 0.00 0.00 0.00 3.46
2922 6513 3.433615 GCTATAGCGGGCTATTTGTGAAG 59.566 47.826 17.49 9.39 39.65 3.02
2923 6514 3.399330 GCTATAGCGGGCTATTTGTGAA 58.601 45.455 17.49 0.00 39.65 3.18
2924 6515 3.040147 GCTATAGCGGGCTATTTGTGA 57.960 47.619 17.49 0.00 39.65 3.58
2937 6528 2.816672 GGGCCTTCAAATCAGCTATAGC 59.183 50.000 17.33 17.33 42.49 2.97
2938 6529 3.070018 CGGGCCTTCAAATCAGCTATAG 58.930 50.000 0.84 0.00 0.00 1.31
2939 6530 2.810400 GCGGGCCTTCAAATCAGCTATA 60.810 50.000 0.84 0.00 0.00 1.31
2940 6531 1.972872 CGGGCCTTCAAATCAGCTAT 58.027 50.000 0.84 0.00 0.00 2.97
2941 6532 0.748005 GCGGGCCTTCAAATCAGCTA 60.748 55.000 0.84 0.00 0.00 3.32
2942 6533 2.048603 GCGGGCCTTCAAATCAGCT 61.049 57.895 0.84 0.00 0.00 4.24
2943 6534 2.491621 GCGGGCCTTCAAATCAGC 59.508 61.111 0.84 0.00 0.00 4.26
2944 6535 2.764314 CGGCGGGCCTTCAAATCAG 61.764 63.158 0.84 0.00 0.00 2.90
2945 6536 2.749839 CGGCGGGCCTTCAAATCA 60.750 61.111 0.84 0.00 0.00 2.57
2946 6537 4.193334 GCGGCGGGCCTTCAAATC 62.193 66.667 9.78 0.00 34.80 2.17
2947 6538 2.624674 ATAGCGGCGGGCCTTCAAAT 62.625 55.000 9.78 0.00 45.17 2.32
2948 6539 2.830186 AATAGCGGCGGGCCTTCAAA 62.830 55.000 9.78 0.00 45.17 2.69
2949 6540 2.830186 AAATAGCGGCGGGCCTTCAA 62.830 55.000 9.78 0.00 45.17 2.69
2950 6541 2.830186 AAAATAGCGGCGGGCCTTCA 62.830 55.000 9.78 0.00 45.17 3.02
2951 6542 2.060004 GAAAATAGCGGCGGGCCTTC 62.060 60.000 9.78 0.00 45.17 3.46
2952 6543 2.044352 AAAATAGCGGCGGGCCTT 60.044 55.556 9.78 0.00 45.17 4.35
2953 6544 2.516225 GAAAATAGCGGCGGGCCT 60.516 61.111 9.78 0.00 45.17 5.19
2954 6545 3.592814 GGAAAATAGCGGCGGGCC 61.593 66.667 9.78 0.00 45.17 5.80
2955 6546 0.887387 TATGGAAAATAGCGGCGGGC 60.887 55.000 9.78 0.00 44.05 6.13
2956 6547 1.156736 CTATGGAAAATAGCGGCGGG 58.843 55.000 9.78 0.00 0.00 6.13
2957 6548 0.517316 GCTATGGAAAATAGCGGCGG 59.483 55.000 9.78 0.00 37.79 6.13
2958 6549 0.517316 GGCTATGGAAAATAGCGGCG 59.483 55.000 0.51 0.51 45.83 6.46
2959 6550 0.881796 GGGCTATGGAAAATAGCGGC 59.118 55.000 10.37 0.00 45.83 6.53
2960 6551 2.039084 AGAGGGCTATGGAAAATAGCGG 59.961 50.000 10.37 0.00 45.83 5.52
2961 6552 3.409026 AGAGGGCTATGGAAAATAGCG 57.591 47.619 10.37 0.00 45.83 4.26
2962 6553 8.863872 TTAAATAGAGGGCTATGGAAAATAGC 57.136 34.615 8.52 8.52 44.56 2.97
2965 6556 9.487442 TGTTTTAAATAGAGGGCTATGGAAAAT 57.513 29.630 0.00 0.00 37.40 1.82
2966 6557 8.887264 TGTTTTAAATAGAGGGCTATGGAAAA 57.113 30.769 0.00 0.00 37.40 2.29
2969 6560 9.793259 CTTATGTTTTAAATAGAGGGCTATGGA 57.207 33.333 0.00 0.00 37.40 3.41
2970 6561 9.793259 TCTTATGTTTTAAATAGAGGGCTATGG 57.207 33.333 0.00 0.00 37.40 2.74
2985 6576 9.061435 CCTTTGCCCAATTTTTCTTATGTTTTA 57.939 29.630 0.00 0.00 0.00 1.52
2986 6577 7.559533 ACCTTTGCCCAATTTTTCTTATGTTTT 59.440 29.630 0.00 0.00 0.00 2.43
2987 6578 7.059788 ACCTTTGCCCAATTTTTCTTATGTTT 58.940 30.769 0.00 0.00 0.00 2.83
2988 6579 6.600388 ACCTTTGCCCAATTTTTCTTATGTT 58.400 32.000 0.00 0.00 0.00 2.71
2989 6580 6.186420 ACCTTTGCCCAATTTTTCTTATGT 57.814 33.333 0.00 0.00 0.00 2.29
2990 6581 6.709846 TCAACCTTTGCCCAATTTTTCTTATG 59.290 34.615 0.00 0.00 0.00 1.90
2991 6582 6.710295 GTCAACCTTTGCCCAATTTTTCTTAT 59.290 34.615 0.00 0.00 0.00 1.73
2992 6583 6.052360 GTCAACCTTTGCCCAATTTTTCTTA 58.948 36.000 0.00 0.00 0.00 2.10
2993 6584 4.881273 GTCAACCTTTGCCCAATTTTTCTT 59.119 37.500 0.00 0.00 0.00 2.52
2994 6585 4.450976 GTCAACCTTTGCCCAATTTTTCT 58.549 39.130 0.00 0.00 0.00 2.52
2995 6586 3.247411 CGTCAACCTTTGCCCAATTTTTC 59.753 43.478 0.00 0.00 0.00 2.29
2996 6587 3.202097 CGTCAACCTTTGCCCAATTTTT 58.798 40.909 0.00 0.00 0.00 1.94
2997 6588 2.169561 ACGTCAACCTTTGCCCAATTTT 59.830 40.909 0.00 0.00 0.00 1.82
2998 6589 1.760029 ACGTCAACCTTTGCCCAATTT 59.240 42.857 0.00 0.00 0.00 1.82
3017 6608 2.536365 TCCGAGAACATGCACGATTAC 58.464 47.619 0.00 0.00 0.00 1.89
3032 6623 1.258982 GCATGCAGTACGAAATCCGAG 59.741 52.381 14.21 0.00 41.76 4.63
3034 6625 0.043053 CGCATGCAGTACGAAATCCG 60.043 55.000 19.57 0.00 45.44 4.18
3056 6647 6.732896 TGAGAGGGAAGGAGTATGTTATTC 57.267 41.667 0.00 0.00 0.00 1.75
3088 6679 6.362283 GCGTTACAATAGTGTCAAAAATGCTT 59.638 34.615 11.55 0.00 39.30 3.91
3090 6681 5.856455 AGCGTTACAATAGTGTCAAAAATGC 59.144 36.000 11.07 11.07 39.30 3.56
3093 6684 6.787225 ACAAGCGTTACAATAGTGTCAAAAA 58.213 32.000 0.00 0.00 39.30 1.94
3112 6703 3.139077 CCCTTCATCCCGTAATACAAGC 58.861 50.000 0.00 0.00 0.00 4.01
3116 6707 5.997384 ATACTCCCTTCATCCCGTAATAC 57.003 43.478 0.00 0.00 0.00 1.89
3211 6802 3.185455 AGGAGGAAGTATGGAGCAAAGT 58.815 45.455 0.00 0.00 0.00 2.66
3258 6849 0.323360 TACAATGCTTGACAGGGCCC 60.323 55.000 16.46 16.46 0.00 5.80
3261 6852 2.749621 GTTCCTACAATGCTTGACAGGG 59.250 50.000 14.62 0.00 37.17 4.45
3280 6871 2.902608 TGTAGGACACCATCAGAGGTT 58.097 47.619 0.00 0.00 40.77 3.50
3325 6917 4.740822 GGCCCAACCCATGCTCGT 62.741 66.667 0.00 0.00 0.00 4.18
3327 6919 3.936772 TTCGGCCCAACCCATGCTC 62.937 63.158 0.00 0.00 33.26 4.26
3328 6920 3.944250 CTTCGGCCCAACCCATGCT 62.944 63.158 0.00 0.00 33.26 3.79
3329 6921 3.451894 CTTCGGCCCAACCCATGC 61.452 66.667 0.00 0.00 33.26 4.06
3350 6942 2.878526 GCCCACTAGTTGGTAGTTTGGG 60.879 54.545 14.17 9.49 45.25 4.12
3373 6965 6.698766 CCTCTAATGCATATTTCCAAAAGTGC 59.301 38.462 0.00 5.51 34.76 4.40
3490 7084 7.589587 TCATTTACACGTGCTAATGAGTTTTTG 59.410 33.333 28.16 12.68 33.41 2.44
3580 7178 8.273780 ACAATATCTCAAGATCCAGAAAACAC 57.726 34.615 0.00 0.00 36.05 3.32
3618 7217 9.817365 CATACTCTCAATGTTGTTTTAGAACTG 57.183 33.333 0.00 0.00 36.70 3.16
3673 7274 9.738832 TTTCAAAGTATAACAAACAAGTTAGGC 57.261 29.630 0.00 0.00 37.39 3.93
3942 7551 0.606096 ATGGATGTCGTCACACCGAA 59.394 50.000 0.00 0.00 38.80 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.