Multiple sequence alignment - TraesCS5D01G294300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G294300 chr5D 100.000 2951 0 0 403 3353 391330051 391327101 0.000000e+00 5450
1 TraesCS5D01G294300 chr5D 93.920 2681 119 17 680 3351 305762189 305759544 0.000000e+00 4008
2 TraesCS5D01G294300 chr5D 91.500 2694 158 32 681 3353 356119497 356116854 0.000000e+00 3640
3 TraesCS5D01G294300 chr5D 90.799 2717 156 34 681 3353 422770367 422773033 0.000000e+00 3546
4 TraesCS5D01G294300 chr5D 100.000 138 0 0 1 138 391330453 391330316 4.290000e-64 255
5 TraesCS5D01G294300 chr7D 91.231 2714 151 33 682 3353 538836051 538838719 0.000000e+00 3613
6 TraesCS5D01G294300 chr7D 90.926 2722 162 32 678 3353 112191313 112188631 0.000000e+00 3579
7 TraesCS5D01G294300 chr7D 89.945 2715 149 42 685 3353 426837233 426834597 0.000000e+00 3387
8 TraesCS5D01G294300 chr4D 91.120 2714 155 36 685 3353 392724843 392722171 0.000000e+00 3598
9 TraesCS5D01G294300 chr5A 91.145 2699 167 35 682 3353 546845988 546848641 0.000000e+00 3594
10 TraesCS5D01G294300 chr5A 90.831 2694 180 34 685 3353 640389058 640386407 0.000000e+00 3544
11 TraesCS5D01G294300 chr5A 90.111 2154 144 46 682 2809 697625373 697627483 0.000000e+00 2734
12 TraesCS5D01G294300 chr3D 90.651 2717 152 43 682 3353 52842442 52845101 0.000000e+00 3517
13 TraesCS5D01G294300 chr3D 91.211 1024 51 15 2344 3353 534218086 534217088 0.000000e+00 1356
14 TraesCS5D01G294300 chr1A 90.766 2155 135 33 680 2809 13813936 13811821 0.000000e+00 2819
15 TraesCS5D01G294300 chr1A 90.660 2152 133 34 685 2809 566074871 566072761 0.000000e+00 2798
16 TraesCS5D01G294300 chr1A 90.492 2156 136 37 682 2809 34337446 34339560 0.000000e+00 2782
17 TraesCS5D01G294300 chr7A 90.390 2154 137 34 682 2809 576403832 576405941 0.000000e+00 2767
18 TraesCS5D01G294300 chr4A 90.386 2153 139 35 682 2809 628881991 628884100 0.000000e+00 2767
19 TraesCS5D01G294300 chr5B 86.796 568 45 17 2482 3048 39755294 39755832 1.030000e-169 606
20 TraesCS5D01G294300 chr5B 90.444 293 17 2 403 685 471338616 471338325 3.160000e-100 375
21 TraesCS5D01G294300 chr5B 94.203 138 8 0 1 138 471338818 471338681 9.430000e-51 211
22 TraesCS5D01G294300 chr3A 87.844 436 25 10 2446 2881 22008971 22008564 1.400000e-133 486


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G294300 chr5D 391327101 391330453 3352 True 2852.5 5450 100.000 1 3353 2 chr5D.!!$R3 3352
1 TraesCS5D01G294300 chr5D 305759544 305762189 2645 True 4008.0 4008 93.920 680 3351 1 chr5D.!!$R1 2671
2 TraesCS5D01G294300 chr5D 356116854 356119497 2643 True 3640.0 3640 91.500 681 3353 1 chr5D.!!$R2 2672
3 TraesCS5D01G294300 chr5D 422770367 422773033 2666 False 3546.0 3546 90.799 681 3353 1 chr5D.!!$F1 2672
4 TraesCS5D01G294300 chr7D 538836051 538838719 2668 False 3613.0 3613 91.231 682 3353 1 chr7D.!!$F1 2671
5 TraesCS5D01G294300 chr7D 112188631 112191313 2682 True 3579.0 3579 90.926 678 3353 1 chr7D.!!$R1 2675
6 TraesCS5D01G294300 chr7D 426834597 426837233 2636 True 3387.0 3387 89.945 685 3353 1 chr7D.!!$R2 2668
7 TraesCS5D01G294300 chr4D 392722171 392724843 2672 True 3598.0 3598 91.120 685 3353 1 chr4D.!!$R1 2668
8 TraesCS5D01G294300 chr5A 546845988 546848641 2653 False 3594.0 3594 91.145 682 3353 1 chr5A.!!$F1 2671
9 TraesCS5D01G294300 chr5A 640386407 640389058 2651 True 3544.0 3544 90.831 685 3353 1 chr5A.!!$R1 2668
10 TraesCS5D01G294300 chr5A 697625373 697627483 2110 False 2734.0 2734 90.111 682 2809 1 chr5A.!!$F2 2127
11 TraesCS5D01G294300 chr3D 52842442 52845101 2659 False 3517.0 3517 90.651 682 3353 1 chr3D.!!$F1 2671
12 TraesCS5D01G294300 chr3D 534217088 534218086 998 True 1356.0 1356 91.211 2344 3353 1 chr3D.!!$R1 1009
13 TraesCS5D01G294300 chr1A 13811821 13813936 2115 True 2819.0 2819 90.766 680 2809 1 chr1A.!!$R1 2129
14 TraesCS5D01G294300 chr1A 566072761 566074871 2110 True 2798.0 2798 90.660 685 2809 1 chr1A.!!$R2 2124
15 TraesCS5D01G294300 chr1A 34337446 34339560 2114 False 2782.0 2782 90.492 682 2809 1 chr1A.!!$F1 2127
16 TraesCS5D01G294300 chr7A 576403832 576405941 2109 False 2767.0 2767 90.390 682 2809 1 chr7A.!!$F1 2127
17 TraesCS5D01G294300 chr4A 628881991 628884100 2109 False 2767.0 2767 90.386 682 2809 1 chr4A.!!$F1 2127
18 TraesCS5D01G294300 chr5B 39755294 39755832 538 False 606.0 606 86.796 2482 3048 1 chr5B.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.110644 GGTTTCGCACGAAGCTTCTG 60.111 55.0 23.5 19.65 42.61 3.02 F
521 522 0.179000 AGGAGGAAGCAATGTAGCCG 59.821 55.0 0.0 0.00 34.23 5.52 F
530 531 0.673333 CAATGTAGCCGCCACTGTCA 60.673 55.0 0.0 0.00 0.00 3.58 F
531 532 0.673644 AATGTAGCCGCCACTGTCAC 60.674 55.0 0.0 0.00 0.00 3.67 F
1000 1008 0.686112 CTCACTCACTCCTCTCCCCC 60.686 65.0 0.0 0.00 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 2023 0.675083 TTGATTGCCTGGCTTGTGTG 59.325 50.000 21.03 0.0 0.00 3.82 R
2012 2065 2.419324 GCTCCTCAAGTTGATGCTTCTG 59.581 50.000 5.91 0.0 0.00 3.02 R
2232 2286 2.795329 TCATCTTGTCCAGCTTTTCCC 58.205 47.619 0.00 0.0 0.00 3.97 R
2251 2305 5.760253 TCACTCCTTCATGACAACTTCTTTC 59.240 40.000 0.00 0.0 0.00 2.62 R
2603 2729 4.053295 AGTTTGTGCAATCTGTGAAATGC 58.947 39.130 0.00 0.0 39.22 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.712217 CGATAGTCGTTGAGCCAAATTAA 57.288 39.130 0.00 0.00 34.72 1.40
28 29 6.102006 CGATAGTCGTTGAGCCAAATTAAA 57.898 37.500 0.00 0.00 34.72 1.52
29 30 6.539324 CGATAGTCGTTGAGCCAAATTAAAA 58.461 36.000 0.00 0.00 34.72 1.52
30 31 7.186804 CGATAGTCGTTGAGCCAAATTAAAAT 58.813 34.615 0.00 0.00 34.72 1.82
31 32 7.696453 CGATAGTCGTTGAGCCAAATTAAAATT 59.304 33.333 0.00 0.00 34.72 1.82
32 33 9.997482 GATAGTCGTTGAGCCAAATTAAAATTA 57.003 29.630 0.00 0.00 0.00 1.40
77 78 4.944962 CGGAGCAGTGTTCATAATTTGA 57.055 40.909 9.35 0.00 0.00 2.69
78 79 5.490139 CGGAGCAGTGTTCATAATTTGAT 57.510 39.130 9.35 0.00 33.34 2.57
79 80 5.883661 CGGAGCAGTGTTCATAATTTGATT 58.116 37.500 9.35 0.00 33.34 2.57
80 81 5.740569 CGGAGCAGTGTTCATAATTTGATTG 59.259 40.000 9.35 0.00 33.34 2.67
81 82 6.623549 CGGAGCAGTGTTCATAATTTGATTGT 60.624 38.462 9.35 0.00 33.34 2.71
82 83 7.092716 GGAGCAGTGTTCATAATTTGATTGTT 58.907 34.615 9.35 0.00 33.34 2.83
83 84 7.599998 GGAGCAGTGTTCATAATTTGATTGTTT 59.400 33.333 9.35 0.00 33.34 2.83
84 85 9.624697 GAGCAGTGTTCATAATTTGATTGTTTA 57.375 29.630 1.57 0.00 33.34 2.01
85 86 9.630098 AGCAGTGTTCATAATTTGATTGTTTAG 57.370 29.630 0.00 0.00 33.34 1.85
86 87 9.624697 GCAGTGTTCATAATTTGATTGTTTAGA 57.375 29.630 0.00 0.00 33.34 2.10
92 93 9.914923 TTCATAATTTGATTGTTTAGATCGTCG 57.085 29.630 0.00 0.00 33.34 5.12
93 94 8.547894 TCATAATTTGATTGTTTAGATCGTCGG 58.452 33.333 0.00 0.00 0.00 4.79
94 95 6.978343 AATTTGATTGTTTAGATCGTCGGA 57.022 33.333 0.00 0.00 0.00 4.55
95 96 6.978343 ATTTGATTGTTTAGATCGTCGGAA 57.022 33.333 0.00 0.00 0.00 4.30
96 97 6.978343 TTTGATTGTTTAGATCGTCGGAAT 57.022 33.333 0.00 0.00 0.00 3.01
97 98 6.978343 TTGATTGTTTAGATCGTCGGAATT 57.022 33.333 0.00 0.00 0.00 2.17
98 99 6.978343 TGATTGTTTAGATCGTCGGAATTT 57.022 33.333 0.00 0.00 0.00 1.82
99 100 8.481974 TTGATTGTTTAGATCGTCGGAATTTA 57.518 30.769 0.00 0.00 0.00 1.40
100 101 7.902032 TGATTGTTTAGATCGTCGGAATTTAC 58.098 34.615 0.00 0.00 0.00 2.01
101 102 7.762615 TGATTGTTTAGATCGTCGGAATTTACT 59.237 33.333 0.00 0.00 0.00 2.24
102 103 9.241317 GATTGTTTAGATCGTCGGAATTTACTA 57.759 33.333 0.00 0.00 0.00 1.82
103 104 9.760077 ATTGTTTAGATCGTCGGAATTTACTAT 57.240 29.630 0.00 0.00 0.00 2.12
104 105 8.570096 TGTTTAGATCGTCGGAATTTACTATG 57.430 34.615 0.00 0.00 0.00 2.23
105 106 8.192774 TGTTTAGATCGTCGGAATTTACTATGT 58.807 33.333 0.00 0.00 0.00 2.29
106 107 9.028185 GTTTAGATCGTCGGAATTTACTATGTT 57.972 33.333 0.00 0.00 0.00 2.71
110 111 9.760077 AGATCGTCGGAATTTACTATGTTATTT 57.240 29.630 0.00 0.00 0.00 1.40
113 114 9.590451 TCGTCGGAATTTACTATGTTATTTTCT 57.410 29.630 0.00 0.00 0.00 2.52
124 125 8.500753 ACTATGTTATTTTCTATGGTTTCGCA 57.499 30.769 0.00 0.00 0.00 5.10
125 126 8.395633 ACTATGTTATTTTCTATGGTTTCGCAC 58.604 33.333 0.00 0.00 0.00 5.34
126 127 5.623335 TGTTATTTTCTATGGTTTCGCACG 58.377 37.500 0.00 0.00 0.00 5.34
127 128 5.408909 TGTTATTTTCTATGGTTTCGCACGA 59.591 36.000 0.00 0.00 0.00 4.35
128 129 6.073167 TGTTATTTTCTATGGTTTCGCACGAA 60.073 34.615 0.49 0.49 0.00 3.85
129 130 4.398549 TTTTCTATGGTTTCGCACGAAG 57.601 40.909 5.55 0.00 35.38 3.79
130 131 1.355971 TCTATGGTTTCGCACGAAGC 58.644 50.000 10.65 10.65 40.87 3.86
131 132 1.067142 TCTATGGTTTCGCACGAAGCT 60.067 47.619 17.12 3.67 42.61 3.74
132 133 1.732259 CTATGGTTTCGCACGAAGCTT 59.268 47.619 17.12 0.00 42.61 3.74
133 134 0.517316 ATGGTTTCGCACGAAGCTTC 59.483 50.000 16.84 16.84 42.61 3.86
134 135 0.531974 TGGTTTCGCACGAAGCTTCT 60.532 50.000 23.50 8.58 42.61 2.85
135 136 0.110644 GGTTTCGCACGAAGCTTCTG 60.111 55.000 23.50 19.65 42.61 3.02
136 137 0.110644 GTTTCGCACGAAGCTTCTGG 60.111 55.000 23.50 15.85 42.61 3.86
137 138 0.531974 TTTCGCACGAAGCTTCTGGT 60.532 50.000 23.50 12.56 42.61 4.00
426 427 4.421515 CTGGACCCAGGCTGCCAG 62.422 72.222 22.65 20.51 41.62 4.85
437 438 4.100084 CTGCCAGCCCGACATCCA 62.100 66.667 0.00 0.00 0.00 3.41
438 439 4.408821 TGCCAGCCCGACATCCAC 62.409 66.667 0.00 0.00 0.00 4.02
439 440 4.101448 GCCAGCCCGACATCCACT 62.101 66.667 0.00 0.00 0.00 4.00
440 441 2.731571 GCCAGCCCGACATCCACTA 61.732 63.158 0.00 0.00 0.00 2.74
441 442 1.144057 CCAGCCCGACATCCACTAC 59.856 63.158 0.00 0.00 0.00 2.73
442 443 1.144057 CAGCCCGACATCCACTACC 59.856 63.158 0.00 0.00 0.00 3.18
443 444 1.001760 AGCCCGACATCCACTACCT 59.998 57.895 0.00 0.00 0.00 3.08
444 445 0.617820 AGCCCGACATCCACTACCTT 60.618 55.000 0.00 0.00 0.00 3.50
445 446 0.462047 GCCCGACATCCACTACCTTG 60.462 60.000 0.00 0.00 0.00 3.61
446 447 1.191535 CCCGACATCCACTACCTTGA 58.808 55.000 0.00 0.00 0.00 3.02
447 448 1.134788 CCCGACATCCACTACCTTGAC 60.135 57.143 0.00 0.00 0.00 3.18
448 449 1.469251 CCGACATCCACTACCTTGACG 60.469 57.143 0.00 0.00 0.00 4.35
449 450 1.471287 CGACATCCACTACCTTGACGA 59.529 52.381 0.00 0.00 30.80 4.20
450 451 2.731341 CGACATCCACTACCTTGACGAC 60.731 54.545 0.00 0.00 30.80 4.34
451 452 2.230508 GACATCCACTACCTTGACGACA 59.769 50.000 0.00 0.00 0.00 4.35
452 453 2.631062 ACATCCACTACCTTGACGACAA 59.369 45.455 0.00 0.00 34.65 3.18
462 463 2.542020 TTGACGACAAGAGGCAATCA 57.458 45.000 0.00 0.00 0.00 2.57
463 464 2.768253 TGACGACAAGAGGCAATCAT 57.232 45.000 0.00 0.00 0.00 2.45
464 465 2.349590 TGACGACAAGAGGCAATCATG 58.650 47.619 0.00 0.00 32.78 3.07
485 486 9.793252 ATCATGCTAAAATTAACATGTTGACTC 57.207 29.630 21.42 3.07 38.04 3.36
486 487 8.243426 TCATGCTAAAATTAACATGTTGACTCC 58.757 33.333 21.42 2.92 38.04 3.85
487 488 7.517614 TGCTAAAATTAACATGTTGACTCCA 57.482 32.000 21.42 5.33 0.00 3.86
488 489 7.946207 TGCTAAAATTAACATGTTGACTCCAA 58.054 30.769 21.42 6.51 0.00 3.53
489 490 8.081633 TGCTAAAATTAACATGTTGACTCCAAG 58.918 33.333 21.42 10.82 32.06 3.61
490 491 7.542130 GCTAAAATTAACATGTTGACTCCAAGG 59.458 37.037 21.42 5.15 32.06 3.61
491 492 5.391312 AATTAACATGTTGACTCCAAGGC 57.609 39.130 21.42 0.00 32.06 4.35
492 493 1.238439 AACATGTTGACTCCAAGGCG 58.762 50.000 11.07 0.00 32.06 5.52
493 494 0.396435 ACATGTTGACTCCAAGGCGA 59.604 50.000 0.00 0.00 32.06 5.54
494 495 1.003580 ACATGTTGACTCCAAGGCGAT 59.996 47.619 0.00 0.00 32.06 4.58
495 496 1.399440 CATGTTGACTCCAAGGCGATG 59.601 52.381 0.00 0.00 32.06 3.84
496 497 0.684535 TGTTGACTCCAAGGCGATGA 59.315 50.000 0.00 0.00 32.06 2.92
497 498 1.079503 GTTGACTCCAAGGCGATGAC 58.920 55.000 0.00 0.00 32.06 3.06
498 499 0.976641 TTGACTCCAAGGCGATGACT 59.023 50.000 0.00 0.00 0.00 3.41
499 500 1.847328 TGACTCCAAGGCGATGACTA 58.153 50.000 0.00 0.00 0.00 2.59
500 501 2.176045 TGACTCCAAGGCGATGACTAA 58.824 47.619 0.00 0.00 0.00 2.24
501 502 2.565391 TGACTCCAAGGCGATGACTAAA 59.435 45.455 0.00 0.00 0.00 1.85
502 503 3.007506 TGACTCCAAGGCGATGACTAAAA 59.992 43.478 0.00 0.00 0.00 1.52
503 504 3.600388 ACTCCAAGGCGATGACTAAAAG 58.400 45.455 0.00 0.00 0.00 2.27
504 505 2.939103 CTCCAAGGCGATGACTAAAAGG 59.061 50.000 0.00 0.00 0.00 3.11
505 506 2.569853 TCCAAGGCGATGACTAAAAGGA 59.430 45.455 0.00 0.00 0.00 3.36
506 507 2.939103 CCAAGGCGATGACTAAAAGGAG 59.061 50.000 0.00 0.00 0.00 3.69
507 508 2.939103 CAAGGCGATGACTAAAAGGAGG 59.061 50.000 0.00 0.00 0.00 4.30
508 509 2.467880 AGGCGATGACTAAAAGGAGGA 58.532 47.619 0.00 0.00 0.00 3.71
509 510 2.838202 AGGCGATGACTAAAAGGAGGAA 59.162 45.455 0.00 0.00 0.00 3.36
510 511 3.118592 AGGCGATGACTAAAAGGAGGAAG 60.119 47.826 0.00 0.00 0.00 3.46
511 512 2.609916 GCGATGACTAAAAGGAGGAAGC 59.390 50.000 0.00 0.00 0.00 3.86
512 513 3.861840 CGATGACTAAAAGGAGGAAGCA 58.138 45.455 0.00 0.00 0.00 3.91
513 514 4.253685 CGATGACTAAAAGGAGGAAGCAA 58.746 43.478 0.00 0.00 0.00 3.91
514 515 4.878397 CGATGACTAAAAGGAGGAAGCAAT 59.122 41.667 0.00 0.00 0.00 3.56
515 516 5.220739 CGATGACTAAAAGGAGGAAGCAATG 60.221 44.000 0.00 0.00 0.00 2.82
516 517 4.985538 TGACTAAAAGGAGGAAGCAATGT 58.014 39.130 0.00 0.00 0.00 2.71
517 518 6.121776 TGACTAAAAGGAGGAAGCAATGTA 57.878 37.500 0.00 0.00 0.00 2.29
518 519 6.173339 TGACTAAAAGGAGGAAGCAATGTAG 58.827 40.000 0.00 0.00 0.00 2.74
519 520 4.944317 ACTAAAAGGAGGAAGCAATGTAGC 59.056 41.667 0.00 0.00 0.00 3.58
520 521 2.426842 AAGGAGGAAGCAATGTAGCC 57.573 50.000 0.00 0.00 34.23 3.93
521 522 0.179000 AGGAGGAAGCAATGTAGCCG 59.821 55.000 0.00 0.00 34.23 5.52
522 523 1.440145 GGAGGAAGCAATGTAGCCGC 61.440 60.000 0.00 0.00 34.23 6.53
523 524 1.440145 GAGGAAGCAATGTAGCCGCC 61.440 60.000 0.00 0.00 34.23 6.13
524 525 1.748879 GGAAGCAATGTAGCCGCCA 60.749 57.895 0.00 0.00 34.23 5.69
525 526 1.429423 GAAGCAATGTAGCCGCCAC 59.571 57.895 0.00 0.00 34.23 5.01
526 527 1.002134 AAGCAATGTAGCCGCCACT 60.002 52.632 0.00 0.00 34.23 4.00
527 528 1.308069 AAGCAATGTAGCCGCCACTG 61.308 55.000 0.00 0.00 34.23 3.66
528 529 2.040544 GCAATGTAGCCGCCACTGT 61.041 57.895 0.00 0.00 0.00 3.55
529 530 1.982073 GCAATGTAGCCGCCACTGTC 61.982 60.000 0.00 0.00 0.00 3.51
530 531 0.673333 CAATGTAGCCGCCACTGTCA 60.673 55.000 0.00 0.00 0.00 3.58
531 532 0.673644 AATGTAGCCGCCACTGTCAC 60.674 55.000 0.00 0.00 0.00 3.67
532 533 2.434359 GTAGCCGCCACTGTCACC 60.434 66.667 0.00 0.00 0.00 4.02
533 534 3.702048 TAGCCGCCACTGTCACCC 61.702 66.667 0.00 0.00 0.00 4.61
537 538 4.988598 CGCCACTGTCACCCGCTT 62.989 66.667 0.00 0.00 0.00 4.68
538 539 3.050275 GCCACTGTCACCCGCTTC 61.050 66.667 0.00 0.00 0.00 3.86
539 540 2.738521 CCACTGTCACCCGCTTCG 60.739 66.667 0.00 0.00 0.00 3.79
541 542 3.231736 ACTGTCACCCGCTTCGGT 61.232 61.111 4.47 0.00 46.80 4.69
542 543 1.904865 ACTGTCACCCGCTTCGGTA 60.905 57.895 4.47 0.00 46.80 4.02
543 544 1.153823 CTGTCACCCGCTTCGGTAG 60.154 63.158 4.47 0.00 46.80 3.18
544 545 2.508663 GTCACCCGCTTCGGTAGC 60.509 66.667 4.47 0.00 46.80 3.58
551 552 2.202946 GCTTCGGTAGCCCAGAGC 60.203 66.667 0.00 0.00 44.48 4.09
562 563 2.947127 GCCCAGAGCTATGGATTTCT 57.053 50.000 28.99 0.00 43.57 2.52
563 564 2.777094 GCCCAGAGCTATGGATTTCTC 58.223 52.381 28.99 6.48 43.57 2.87
564 565 2.551938 GCCCAGAGCTATGGATTTCTCC 60.552 54.545 28.99 4.07 43.57 3.71
565 566 2.978278 CCCAGAGCTATGGATTTCTCCT 59.022 50.000 28.99 0.00 43.57 3.69
566 567 4.163427 CCCAGAGCTATGGATTTCTCCTA 58.837 47.826 28.99 0.00 43.57 2.94
567 568 4.222588 CCCAGAGCTATGGATTTCTCCTAG 59.777 50.000 28.99 3.73 43.57 3.02
568 569 4.837860 CCAGAGCTATGGATTTCTCCTAGT 59.162 45.833 23.35 0.00 43.57 2.57
569 570 5.306678 CCAGAGCTATGGATTTCTCCTAGTT 59.693 44.000 23.35 0.00 43.57 2.24
570 571 6.454795 CAGAGCTATGGATTTCTCCTAGTTC 58.545 44.000 0.00 0.00 42.59 3.01
571 572 6.267471 CAGAGCTATGGATTTCTCCTAGTTCT 59.733 42.308 0.00 9.50 42.59 3.01
572 573 6.843861 AGAGCTATGGATTTCTCCTAGTTCTT 59.156 38.462 0.00 0.95 42.59 2.52
573 574 6.825610 AGCTATGGATTTCTCCTAGTTCTTG 58.174 40.000 0.00 0.00 42.59 3.02
574 575 6.613271 AGCTATGGATTTCTCCTAGTTCTTGA 59.387 38.462 0.00 0.00 42.59 3.02
575 576 6.928492 GCTATGGATTTCTCCTAGTTCTTGAG 59.072 42.308 0.00 0.00 42.59 3.02
576 577 5.683876 TGGATTTCTCCTAGTTCTTGAGG 57.316 43.478 0.00 0.00 42.59 3.86
577 578 4.080863 TGGATTTCTCCTAGTTCTTGAGGC 60.081 45.833 0.00 0.00 42.59 4.70
578 579 4.163268 GGATTTCTCCTAGTTCTTGAGGCT 59.837 45.833 0.00 0.00 38.65 4.58
579 580 5.364157 GGATTTCTCCTAGTTCTTGAGGCTA 59.636 44.000 0.00 0.00 38.65 3.93
580 581 5.662674 TTTCTCCTAGTTCTTGAGGCTAC 57.337 43.478 0.00 0.00 32.40 3.58
581 582 3.280295 TCTCCTAGTTCTTGAGGCTACG 58.720 50.000 0.00 0.00 32.40 3.51
582 583 2.359531 CTCCTAGTTCTTGAGGCTACGG 59.640 54.545 0.00 0.00 32.40 4.02
583 584 1.409427 CCTAGTTCTTGAGGCTACGGG 59.591 57.143 0.00 0.00 0.00 5.28
584 585 0.822164 TAGTTCTTGAGGCTACGGGC 59.178 55.000 0.00 0.00 40.90 6.13
594 595 3.416955 GCTACGGGCCAAAATGTTG 57.583 52.632 4.39 0.00 34.27 3.33
609 610 7.120789 CAAAATGTTGGGAATTAGAAGTTGC 57.879 36.000 0.00 0.00 0.00 4.17
610 611 6.670695 AAATGTTGGGAATTAGAAGTTGCT 57.329 33.333 0.00 0.00 0.00 3.91
611 612 6.670695 AATGTTGGGAATTAGAAGTTGCTT 57.329 33.333 0.00 0.00 0.00 3.91
612 613 6.670695 ATGTTGGGAATTAGAAGTTGCTTT 57.329 33.333 0.00 0.00 0.00 3.51
613 614 6.084326 TGTTGGGAATTAGAAGTTGCTTTC 57.916 37.500 0.00 0.00 0.00 2.62
614 615 5.154222 GTTGGGAATTAGAAGTTGCTTTCG 58.846 41.667 0.00 0.00 32.33 3.46
615 616 4.394729 TGGGAATTAGAAGTTGCTTTCGT 58.605 39.130 0.00 0.00 32.33 3.85
616 617 5.553123 TGGGAATTAGAAGTTGCTTTCGTA 58.447 37.500 0.00 0.00 32.33 3.43
617 618 5.998981 TGGGAATTAGAAGTTGCTTTCGTAA 59.001 36.000 0.00 0.00 32.33 3.18
618 619 6.487331 TGGGAATTAGAAGTTGCTTTCGTAAA 59.513 34.615 0.00 0.00 32.33 2.01
619 620 6.800408 GGGAATTAGAAGTTGCTTTCGTAAAC 59.200 38.462 0.00 0.00 32.33 2.01
620 621 6.800408 GGAATTAGAAGTTGCTTTCGTAAACC 59.200 38.462 0.00 0.00 32.33 3.27
621 622 7.308408 GGAATTAGAAGTTGCTTTCGTAAACCT 60.308 37.037 0.00 0.00 32.33 3.50
622 623 6.930667 TTAGAAGTTGCTTTCGTAAACCTT 57.069 33.333 0.00 0.00 32.33 3.50
623 624 5.830000 AGAAGTTGCTTTCGTAAACCTTT 57.170 34.783 0.00 0.00 32.33 3.11
624 625 6.203808 AGAAGTTGCTTTCGTAAACCTTTT 57.796 33.333 0.00 0.00 32.33 2.27
625 626 6.627243 AGAAGTTGCTTTCGTAAACCTTTTT 58.373 32.000 0.00 0.00 32.33 1.94
646 647 6.591750 TTTTTGGGTGAAGTTGTTTGTAGA 57.408 33.333 0.00 0.00 0.00 2.59
647 648 6.591750 TTTTGGGTGAAGTTGTTTGTAGAA 57.408 33.333 0.00 0.00 0.00 2.10
648 649 5.570234 TTGGGTGAAGTTGTTTGTAGAAC 57.430 39.130 0.00 0.00 0.00 3.01
649 650 3.949113 TGGGTGAAGTTGTTTGTAGAACC 59.051 43.478 0.00 0.00 0.00 3.62
650 651 3.317149 GGGTGAAGTTGTTTGTAGAACCC 59.683 47.826 0.00 0.00 38.11 4.11
651 652 3.949113 GGTGAAGTTGTTTGTAGAACCCA 59.051 43.478 0.00 0.00 0.00 4.51
652 653 4.583073 GGTGAAGTTGTTTGTAGAACCCAT 59.417 41.667 0.00 0.00 0.00 4.00
653 654 5.766174 GGTGAAGTTGTTTGTAGAACCCATA 59.234 40.000 0.00 0.00 0.00 2.74
654 655 6.433093 GGTGAAGTTGTTTGTAGAACCCATAT 59.567 38.462 0.00 0.00 0.00 1.78
655 656 7.361799 GGTGAAGTTGTTTGTAGAACCCATATC 60.362 40.741 0.00 0.00 0.00 1.63
656 657 7.174253 GTGAAGTTGTTTGTAGAACCCATATCA 59.826 37.037 0.00 0.00 0.00 2.15
657 658 7.888021 TGAAGTTGTTTGTAGAACCCATATCAT 59.112 33.333 0.00 0.00 0.00 2.45
658 659 7.865706 AGTTGTTTGTAGAACCCATATCATC 57.134 36.000 0.00 0.00 0.00 2.92
659 660 6.538742 AGTTGTTTGTAGAACCCATATCATCG 59.461 38.462 0.00 0.00 0.00 3.84
660 661 5.984725 TGTTTGTAGAACCCATATCATCGT 58.015 37.500 0.00 0.00 0.00 3.73
661 662 5.815222 TGTTTGTAGAACCCATATCATCGTG 59.185 40.000 0.00 0.00 0.00 4.35
662 663 5.607939 TTGTAGAACCCATATCATCGTGT 57.392 39.130 0.00 0.00 0.00 4.49
663 664 4.944048 TGTAGAACCCATATCATCGTGTG 58.056 43.478 0.00 0.00 0.00 3.82
664 665 4.647399 TGTAGAACCCATATCATCGTGTGA 59.353 41.667 0.00 0.00 42.06 3.58
665 666 4.327982 AGAACCCATATCATCGTGTGAG 57.672 45.455 0.43 0.00 40.92 3.51
666 667 3.706594 AGAACCCATATCATCGTGTGAGT 59.293 43.478 0.43 0.00 40.92 3.41
667 668 4.162320 AGAACCCATATCATCGTGTGAGTT 59.838 41.667 0.43 0.00 40.92 3.01
668 669 3.797039 ACCCATATCATCGTGTGAGTTG 58.203 45.455 0.43 1.01 40.92 3.16
669 670 3.197766 ACCCATATCATCGTGTGAGTTGT 59.802 43.478 0.43 0.00 40.92 3.32
670 671 3.804325 CCCATATCATCGTGTGAGTTGTC 59.196 47.826 0.43 0.00 40.92 3.18
671 672 4.442052 CCCATATCATCGTGTGAGTTGTCT 60.442 45.833 0.43 0.00 40.92 3.41
672 673 4.505556 CCATATCATCGTGTGAGTTGTCTG 59.494 45.833 0.43 0.00 40.92 3.51
673 674 3.667497 ATCATCGTGTGAGTTGTCTGT 57.333 42.857 0.43 0.00 40.92 3.41
674 675 3.452755 TCATCGTGTGAGTTGTCTGTT 57.547 42.857 0.00 0.00 31.80 3.16
675 676 3.792401 TCATCGTGTGAGTTGTCTGTTT 58.208 40.909 0.00 0.00 31.80 2.83
676 677 4.939271 TCATCGTGTGAGTTGTCTGTTTA 58.061 39.130 0.00 0.00 31.80 2.01
683 684 7.018826 CGTGTGAGTTGTCTGTTTAAAAAGAA 58.981 34.615 9.73 0.00 0.00 2.52
812 814 3.374220 ACCAAGTCGTGTTGATCGTTA 57.626 42.857 1.71 0.00 0.00 3.18
937 943 4.329545 GGTCGGAACCAGCCAGCA 62.330 66.667 0.00 0.00 45.68 4.41
1000 1008 0.686112 CTCACTCACTCCTCTCCCCC 60.686 65.000 0.00 0.00 0.00 5.40
1006 1016 2.007568 ACTCCTCTCCCCCGAGCTA 61.008 63.158 0.00 0.00 35.94 3.32
1032 1042 3.169099 CTTCCTCTCTTTCTCACCTCCA 58.831 50.000 0.00 0.00 0.00 3.86
1037 1047 1.480137 CTCTTTCTCACCTCCAGCGAT 59.520 52.381 0.00 0.00 0.00 4.58
1091 1101 2.439409 CCAACAGCAATGAGTCATCCA 58.561 47.619 5.98 0.00 0.00 3.41
1156 1167 6.939730 TGCAGATGGAGTATTTTGTAAGTCAA 59.060 34.615 0.00 0.00 0.00 3.18
1165 1176 9.909644 GAGTATTTTGTAAGTCAACTCACTCTA 57.090 33.333 0.00 0.00 35.95 2.43
1224 1235 5.507637 AGATGCTCTTGATTTCTTCCATGT 58.492 37.500 0.00 0.00 0.00 3.21
1227 1239 7.778853 AGATGCTCTTGATTTCTTCCATGTTAT 59.221 33.333 0.00 0.00 0.00 1.89
1285 1298 2.222027 GTTGGTACTGCAGCAAACTCT 58.778 47.619 15.27 0.00 45.74 3.24
1641 1659 7.222611 ACTGAATTTGTTTGTTACTGCATTCAC 59.777 33.333 0.00 0.00 30.66 3.18
1685 1703 9.725019 TGTATGAGTTCTGTAACTGAATTTGAT 57.275 29.630 0.00 0.00 46.09 2.57
1820 1864 3.195610 GCCGTGGGATATGTATCATGAGA 59.804 47.826 0.09 0.00 34.40 3.27
1888 1932 5.511545 GGTTGAGAAACTGAAGAAGGAGCTA 60.512 44.000 0.00 0.00 0.00 3.32
2012 2065 4.400567 AGGCAATCAATGAACTTAAGGAGC 59.599 41.667 7.53 0.00 0.00 4.70
2232 2286 2.753043 GGCTGGTCATGGGTGCAG 60.753 66.667 0.00 0.00 0.00 4.41
2251 2305 2.490903 CAGGGAAAAGCTGGACAAGATG 59.509 50.000 0.00 0.00 0.00 2.90
2350 2449 5.163364 GCCTAGAAATGAAGGAGTCTGATGA 60.163 44.000 0.00 0.00 0.00 2.92
2453 2561 1.686115 GGTGCTGTAATGGCCCTGATT 60.686 52.381 0.00 0.00 0.00 2.57
2603 2729 5.723672 TGGTCCTGAGAAGTTAGTTGTAG 57.276 43.478 0.00 0.00 0.00 2.74
2695 2841 7.487822 AGGTAGCATTACATAGATAGCACAT 57.512 36.000 0.00 0.00 0.00 3.21
2697 2843 9.035890 AGGTAGCATTACATAGATAGCACATTA 57.964 33.333 0.00 0.00 0.00 1.90
2698 2844 9.088512 GGTAGCATTACATAGATAGCACATTAC 57.911 37.037 0.00 0.00 0.00 1.89
2699 2845 9.862371 GTAGCATTACATAGATAGCACATTACT 57.138 33.333 0.00 0.00 0.00 2.24
2700 2846 8.768957 AGCATTACATAGATAGCACATTACTG 57.231 34.615 0.00 0.00 0.00 2.74
2701 2847 8.370940 AGCATTACATAGATAGCACATTACTGT 58.629 33.333 0.00 0.00 35.44 3.55
2702 2848 8.651588 GCATTACATAGATAGCACATTACTGTC 58.348 37.037 0.00 0.00 31.62 3.51
2703 2849 9.920133 CATTACATAGATAGCACATTACTGTCT 57.080 33.333 0.00 0.00 38.85 3.41
2705 2851 7.588497 ACATAGATAGCACATTACTGTCTCA 57.412 36.000 0.00 0.00 36.97 3.27
2706 2852 7.656412 ACATAGATAGCACATTACTGTCTCAG 58.344 38.462 0.00 0.00 36.97 3.35
2707 2853 7.503902 ACATAGATAGCACATTACTGTCTCAGA 59.496 37.037 3.70 0.00 36.97 3.27
2708 2854 6.782082 AGATAGCACATTACTGTCTCAGAA 57.218 37.500 3.70 0.00 30.67 3.02
2709 2855 7.358770 AGATAGCACATTACTGTCTCAGAAT 57.641 36.000 3.70 0.00 30.67 2.40
2710 2856 8.470657 AGATAGCACATTACTGTCTCAGAATA 57.529 34.615 3.70 0.00 30.67 1.75
2711 2857 8.918116 AGATAGCACATTACTGTCTCAGAATAA 58.082 33.333 3.70 0.00 30.67 1.40
2712 2858 8.879342 ATAGCACATTACTGTCTCAGAATAAC 57.121 34.615 3.70 0.00 35.18 1.89
2713 2859 6.940739 AGCACATTACTGTCTCAGAATAACT 58.059 36.000 3.70 0.00 35.18 2.24
2714 2860 8.067751 AGCACATTACTGTCTCAGAATAACTA 57.932 34.615 3.70 0.00 35.18 2.24
2715 2861 8.531982 AGCACATTACTGTCTCAGAATAACTAA 58.468 33.333 3.70 0.00 35.18 2.24
2716 2862 9.151471 GCACATTACTGTCTCAGAATAACTAAA 57.849 33.333 3.70 0.00 35.18 1.85
2760 2919 8.696043 TTAGTGACACTTAGGTAGTTCAACTA 57.304 34.615 14.50 0.00 33.85 2.24
2783 2942 5.069501 ACGAAACTGACATAGGTAGTTCC 57.930 43.478 0.00 0.00 33.82 3.62
3014 3179 1.011451 GTCTTCGTGCACCTCTGCTC 61.011 60.000 12.15 0.00 44.57 4.26
3121 3286 1.143684 TCCTTCATTGCCCATAGGAGC 59.856 52.381 0.00 0.00 33.47 4.70
3194 3359 2.099405 GCTGCTTCTCCTCACTAGTCT 58.901 52.381 0.00 0.00 0.00 3.24
3238 3404 1.821216 CATCTACCAGCCCAAAACGT 58.179 50.000 0.00 0.00 0.00 3.99
3252 3418 4.141855 CAAAACGTTGGTGTACCTCATC 57.858 45.455 0.00 0.00 36.82 2.92
3261 3427 2.423577 GTGTACCTCATCGCAACCTTT 58.576 47.619 0.00 0.00 0.00 3.11
3270 3436 5.339008 TCATCGCAACCTTTATGTAGTCT 57.661 39.130 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.712217 TTAATTTGGCTCAACGACTATCG 57.288 39.130 0.00 0.00 46.93 2.92
6 7 8.911247 AATTTTAATTTGGCTCAACGACTATC 57.089 30.769 0.00 0.00 0.00 2.08
41 42 2.744741 TGCTCCGCGACATGAATAAAAA 59.255 40.909 8.23 0.00 0.00 1.94
42 43 2.351418 CTGCTCCGCGACATGAATAAAA 59.649 45.455 8.23 0.00 0.00 1.52
43 44 1.933181 CTGCTCCGCGACATGAATAAA 59.067 47.619 8.23 0.00 0.00 1.40
44 45 1.134818 ACTGCTCCGCGACATGAATAA 60.135 47.619 8.23 0.00 0.00 1.40
45 46 0.459899 ACTGCTCCGCGACATGAATA 59.540 50.000 8.23 0.00 0.00 1.75
46 47 1.086067 CACTGCTCCGCGACATGAAT 61.086 55.000 8.23 0.00 0.00 2.57
47 48 1.737735 CACTGCTCCGCGACATGAA 60.738 57.895 8.23 0.00 0.00 2.57
48 49 2.125952 CACTGCTCCGCGACATGA 60.126 61.111 8.23 0.00 0.00 3.07
49 50 1.959899 GAACACTGCTCCGCGACATG 61.960 60.000 8.23 6.21 0.00 3.21
50 51 1.738099 GAACACTGCTCCGCGACAT 60.738 57.895 8.23 0.00 0.00 3.06
51 52 2.355837 GAACACTGCTCCGCGACA 60.356 61.111 8.23 1.24 0.00 4.35
52 53 0.457853 TATGAACACTGCTCCGCGAC 60.458 55.000 8.23 0.00 0.00 5.19
53 54 0.245266 TTATGAACACTGCTCCGCGA 59.755 50.000 8.23 0.00 0.00 5.87
54 55 1.290203 ATTATGAACACTGCTCCGCG 58.710 50.000 0.00 0.00 0.00 6.46
55 56 3.126858 TCAAATTATGAACACTGCTCCGC 59.873 43.478 0.00 0.00 34.30 5.54
56 57 4.944962 TCAAATTATGAACACTGCTCCG 57.055 40.909 0.00 0.00 34.30 4.63
57 58 6.624423 ACAATCAAATTATGAACACTGCTCC 58.376 36.000 0.00 0.00 42.54 4.70
58 59 8.524870 AAACAATCAAATTATGAACACTGCTC 57.475 30.769 0.00 0.00 42.54 4.26
59 60 9.630098 CTAAACAATCAAATTATGAACACTGCT 57.370 29.630 0.00 0.00 42.54 4.24
60 61 9.624697 TCTAAACAATCAAATTATGAACACTGC 57.375 29.630 0.00 0.00 42.54 4.40
66 67 9.914923 CGACGATCTAAACAATCAAATTATGAA 57.085 29.630 0.00 0.00 42.54 2.57
67 68 8.547894 CCGACGATCTAAACAATCAAATTATGA 58.452 33.333 0.00 0.00 43.67 2.15
68 69 8.547894 TCCGACGATCTAAACAATCAAATTATG 58.452 33.333 0.00 0.00 0.00 1.90
69 70 8.657074 TCCGACGATCTAAACAATCAAATTAT 57.343 30.769 0.00 0.00 0.00 1.28
70 71 8.481974 TTCCGACGATCTAAACAATCAAATTA 57.518 30.769 0.00 0.00 0.00 1.40
71 72 6.978343 TCCGACGATCTAAACAATCAAATT 57.022 33.333 0.00 0.00 0.00 1.82
72 73 6.978343 TTCCGACGATCTAAACAATCAAAT 57.022 33.333 0.00 0.00 0.00 2.32
73 74 6.978343 ATTCCGACGATCTAAACAATCAAA 57.022 33.333 0.00 0.00 0.00 2.69
74 75 6.978343 AATTCCGACGATCTAAACAATCAA 57.022 33.333 0.00 0.00 0.00 2.57
75 76 6.978343 AAATTCCGACGATCTAAACAATCA 57.022 33.333 0.00 0.00 0.00 2.57
76 77 8.128016 AGTAAATTCCGACGATCTAAACAATC 57.872 34.615 0.00 0.00 0.00 2.67
77 78 9.760077 ATAGTAAATTCCGACGATCTAAACAAT 57.240 29.630 0.00 0.00 0.00 2.71
78 79 9.027129 CATAGTAAATTCCGACGATCTAAACAA 57.973 33.333 0.00 0.00 0.00 2.83
79 80 8.192774 ACATAGTAAATTCCGACGATCTAAACA 58.807 33.333 0.00 0.00 0.00 2.83
80 81 8.571461 ACATAGTAAATTCCGACGATCTAAAC 57.429 34.615 0.00 0.00 0.00 2.01
84 85 9.760077 AAATAACATAGTAAATTCCGACGATCT 57.240 29.630 0.00 0.00 0.00 2.75
87 88 9.590451 AGAAAATAACATAGTAAATTCCGACGA 57.410 29.630 0.00 0.00 0.00 4.20
98 99 9.602568 TGCGAAACCATAGAAAATAACATAGTA 57.397 29.630 0.00 0.00 0.00 1.82
99 100 8.395633 GTGCGAAACCATAGAAAATAACATAGT 58.604 33.333 0.00 0.00 0.00 2.12
100 101 7.582679 CGTGCGAAACCATAGAAAATAACATAG 59.417 37.037 0.00 0.00 0.00 2.23
101 102 7.278203 TCGTGCGAAACCATAGAAAATAACATA 59.722 33.333 0.00 0.00 0.00 2.29
102 103 6.092944 TCGTGCGAAACCATAGAAAATAACAT 59.907 34.615 0.00 0.00 0.00 2.71
103 104 5.408909 TCGTGCGAAACCATAGAAAATAACA 59.591 36.000 0.00 0.00 0.00 2.41
104 105 5.860641 TCGTGCGAAACCATAGAAAATAAC 58.139 37.500 0.00 0.00 0.00 1.89
105 106 6.483385 TTCGTGCGAAACCATAGAAAATAA 57.517 33.333 4.43 0.00 0.00 1.40
106 107 5.446741 GCTTCGTGCGAAACCATAGAAAATA 60.447 40.000 8.39 0.00 33.34 1.40
107 108 4.671766 GCTTCGTGCGAAACCATAGAAAAT 60.672 41.667 8.39 0.00 33.34 1.82
108 109 3.364565 GCTTCGTGCGAAACCATAGAAAA 60.365 43.478 8.39 0.00 33.34 2.29
109 110 2.158841 GCTTCGTGCGAAACCATAGAAA 59.841 45.455 8.39 0.00 33.34 2.52
110 111 1.730064 GCTTCGTGCGAAACCATAGAA 59.270 47.619 8.39 0.00 33.34 2.10
111 112 1.355971 GCTTCGTGCGAAACCATAGA 58.644 50.000 8.39 0.00 33.34 1.98
112 113 3.877801 GCTTCGTGCGAAACCATAG 57.122 52.632 8.39 0.00 33.34 2.23
409 410 4.421515 CTGGCAGCCTGGGTCCAG 62.422 72.222 21.53 21.53 43.26 3.86
420 421 4.100084 TGGATGTCGGGCTGGCAG 62.100 66.667 10.94 10.94 0.00 4.85
421 422 4.408821 GTGGATGTCGGGCTGGCA 62.409 66.667 1.65 1.65 0.00 4.92
422 423 2.731571 TAGTGGATGTCGGGCTGGC 61.732 63.158 0.00 0.00 0.00 4.85
423 424 1.144057 GTAGTGGATGTCGGGCTGG 59.856 63.158 0.00 0.00 0.00 4.85
424 425 1.144057 GGTAGTGGATGTCGGGCTG 59.856 63.158 0.00 0.00 0.00 4.85
425 426 0.617820 AAGGTAGTGGATGTCGGGCT 60.618 55.000 0.00 0.00 0.00 5.19
426 427 0.462047 CAAGGTAGTGGATGTCGGGC 60.462 60.000 0.00 0.00 0.00 6.13
427 428 1.134788 GTCAAGGTAGTGGATGTCGGG 60.135 57.143 0.00 0.00 0.00 5.14
428 429 1.469251 CGTCAAGGTAGTGGATGTCGG 60.469 57.143 0.00 0.00 0.00 4.79
429 430 1.471287 TCGTCAAGGTAGTGGATGTCG 59.529 52.381 0.00 0.00 0.00 4.35
430 431 2.230508 TGTCGTCAAGGTAGTGGATGTC 59.769 50.000 0.00 0.00 0.00 3.06
431 432 2.244695 TGTCGTCAAGGTAGTGGATGT 58.755 47.619 0.00 0.00 0.00 3.06
432 433 3.254060 CTTGTCGTCAAGGTAGTGGATG 58.746 50.000 13.70 0.00 45.02 3.51
433 434 3.594603 CTTGTCGTCAAGGTAGTGGAT 57.405 47.619 13.70 0.00 45.02 3.41
442 443 6.714214 GCATGATTGCCTCTTGTCGTCAAG 62.714 50.000 15.12 15.12 45.42 3.02
443 444 2.542020 TGATTGCCTCTTGTCGTCAA 57.458 45.000 0.00 0.00 0.00 3.18
444 445 2.349590 CATGATTGCCTCTTGTCGTCA 58.650 47.619 0.00 0.00 0.00 4.35
445 446 1.063174 GCATGATTGCCTCTTGTCGTC 59.937 52.381 0.00 0.00 43.38 4.20
446 447 1.089920 GCATGATTGCCTCTTGTCGT 58.910 50.000 0.00 0.00 43.38 4.34
447 448 3.911989 GCATGATTGCCTCTTGTCG 57.088 52.632 0.00 0.00 43.38 4.35
462 463 8.121305 TGGAGTCAACATGTTAATTTTAGCAT 57.879 30.769 11.53 0.00 35.37 3.79
463 464 7.517614 TGGAGTCAACATGTTAATTTTAGCA 57.482 32.000 11.53 0.00 0.00 3.49
464 465 7.542130 CCTTGGAGTCAACATGTTAATTTTAGC 59.458 37.037 11.53 0.00 0.00 3.09
465 466 7.542130 GCCTTGGAGTCAACATGTTAATTTTAG 59.458 37.037 11.53 4.08 0.00 1.85
466 467 7.375053 GCCTTGGAGTCAACATGTTAATTTTA 58.625 34.615 11.53 0.00 0.00 1.52
467 468 6.223120 GCCTTGGAGTCAACATGTTAATTTT 58.777 36.000 11.53 0.00 0.00 1.82
468 469 5.564651 CGCCTTGGAGTCAACATGTTAATTT 60.565 40.000 11.53 0.00 0.00 1.82
469 470 4.082787 CGCCTTGGAGTCAACATGTTAATT 60.083 41.667 11.53 0.00 0.00 1.40
470 471 3.440173 CGCCTTGGAGTCAACATGTTAAT 59.560 43.478 11.53 0.00 0.00 1.40
471 472 2.811431 CGCCTTGGAGTCAACATGTTAA 59.189 45.455 11.53 0.00 0.00 2.01
472 473 2.037902 TCGCCTTGGAGTCAACATGTTA 59.962 45.455 11.53 0.00 0.00 2.41
473 474 1.202758 TCGCCTTGGAGTCAACATGTT 60.203 47.619 4.92 4.92 0.00 2.71
474 475 0.396435 TCGCCTTGGAGTCAACATGT 59.604 50.000 0.00 0.00 0.00 3.21
475 476 1.399440 CATCGCCTTGGAGTCAACATG 59.601 52.381 0.00 0.00 0.00 3.21
476 477 1.278985 TCATCGCCTTGGAGTCAACAT 59.721 47.619 0.00 0.00 0.00 2.71
477 478 0.684535 TCATCGCCTTGGAGTCAACA 59.315 50.000 0.00 0.00 0.00 3.33
478 479 1.079503 GTCATCGCCTTGGAGTCAAC 58.920 55.000 0.00 0.00 0.00 3.18
479 480 0.976641 AGTCATCGCCTTGGAGTCAA 59.023 50.000 0.00 0.00 0.00 3.18
480 481 1.847328 TAGTCATCGCCTTGGAGTCA 58.153 50.000 0.00 0.00 0.00 3.41
481 482 2.961526 TTAGTCATCGCCTTGGAGTC 57.038 50.000 0.00 0.00 0.00 3.36
482 483 3.600388 CTTTTAGTCATCGCCTTGGAGT 58.400 45.455 0.00 0.00 0.00 3.85
483 484 2.939103 CCTTTTAGTCATCGCCTTGGAG 59.061 50.000 0.00 0.00 0.00 3.86
484 485 2.569853 TCCTTTTAGTCATCGCCTTGGA 59.430 45.455 0.00 0.00 0.00 3.53
485 486 2.939103 CTCCTTTTAGTCATCGCCTTGG 59.061 50.000 0.00 0.00 0.00 3.61
486 487 2.939103 CCTCCTTTTAGTCATCGCCTTG 59.061 50.000 0.00 0.00 0.00 3.61
487 488 2.838202 TCCTCCTTTTAGTCATCGCCTT 59.162 45.455 0.00 0.00 0.00 4.35
488 489 2.467880 TCCTCCTTTTAGTCATCGCCT 58.532 47.619 0.00 0.00 0.00 5.52
489 490 2.981859 TCCTCCTTTTAGTCATCGCC 57.018 50.000 0.00 0.00 0.00 5.54
490 491 2.609916 GCTTCCTCCTTTTAGTCATCGC 59.390 50.000 0.00 0.00 0.00 4.58
491 492 3.861840 TGCTTCCTCCTTTTAGTCATCG 58.138 45.455 0.00 0.00 0.00 3.84
492 493 5.649831 ACATTGCTTCCTCCTTTTAGTCATC 59.350 40.000 0.00 0.00 0.00 2.92
493 494 5.574188 ACATTGCTTCCTCCTTTTAGTCAT 58.426 37.500 0.00 0.00 0.00 3.06
494 495 4.985538 ACATTGCTTCCTCCTTTTAGTCA 58.014 39.130 0.00 0.00 0.00 3.41
495 496 5.065346 GCTACATTGCTTCCTCCTTTTAGTC 59.935 44.000 0.00 0.00 0.00 2.59
496 497 4.944317 GCTACATTGCTTCCTCCTTTTAGT 59.056 41.667 0.00 0.00 0.00 2.24
497 498 4.336713 GGCTACATTGCTTCCTCCTTTTAG 59.663 45.833 0.00 0.00 0.00 1.85
498 499 4.270008 GGCTACATTGCTTCCTCCTTTTA 58.730 43.478 0.00 0.00 0.00 1.52
499 500 3.092301 GGCTACATTGCTTCCTCCTTTT 58.908 45.455 0.00 0.00 0.00 2.27
500 501 2.728007 GGCTACATTGCTTCCTCCTTT 58.272 47.619 0.00 0.00 0.00 3.11
501 502 1.407437 CGGCTACATTGCTTCCTCCTT 60.407 52.381 0.00 0.00 0.00 3.36
502 503 0.179000 CGGCTACATTGCTTCCTCCT 59.821 55.000 0.00 0.00 0.00 3.69
503 504 1.440145 GCGGCTACATTGCTTCCTCC 61.440 60.000 0.00 0.00 0.00 4.30
504 505 1.440145 GGCGGCTACATTGCTTCCTC 61.440 60.000 0.00 0.00 0.00 3.71
505 506 1.452108 GGCGGCTACATTGCTTCCT 60.452 57.895 0.00 0.00 0.00 3.36
506 507 1.748879 TGGCGGCTACATTGCTTCC 60.749 57.895 11.43 0.00 0.00 3.46
507 508 1.026718 AGTGGCGGCTACATTGCTTC 61.027 55.000 18.88 0.00 0.00 3.86
508 509 1.002134 AGTGGCGGCTACATTGCTT 60.002 52.632 18.88 0.00 0.00 3.91
509 510 1.746615 CAGTGGCGGCTACATTGCT 60.747 57.895 18.88 0.00 0.00 3.91
510 511 1.982073 GACAGTGGCGGCTACATTGC 61.982 60.000 18.88 1.48 0.00 3.56
511 512 0.673333 TGACAGTGGCGGCTACATTG 60.673 55.000 18.88 11.24 0.00 2.82
512 513 0.673644 GTGACAGTGGCGGCTACATT 60.674 55.000 18.88 4.41 0.00 2.71
513 514 1.079127 GTGACAGTGGCGGCTACAT 60.079 57.895 18.88 6.12 0.00 2.29
514 515 2.342279 GTGACAGTGGCGGCTACA 59.658 61.111 18.88 0.00 0.00 2.74
515 516 2.434359 GGTGACAGTGGCGGCTAC 60.434 66.667 11.43 8.59 0.00 3.58
516 517 3.702048 GGGTGACAGTGGCGGCTA 61.702 66.667 11.43 0.00 0.00 3.93
520 521 4.988598 AAGCGGGTGACAGTGGCG 62.989 66.667 0.00 0.00 0.00 5.69
521 522 3.050275 GAAGCGGGTGACAGTGGC 61.050 66.667 0.00 0.00 0.00 5.01
522 523 2.738521 CGAAGCGGGTGACAGTGG 60.739 66.667 0.00 0.00 0.00 4.00
523 524 2.738521 CCGAAGCGGGTGACAGTG 60.739 66.667 0.00 0.00 44.15 3.66
543 544 2.551938 GGAGAAATCCATAGCTCTGGGC 60.552 54.545 17.44 0.00 36.89 5.36
544 545 2.978278 AGGAGAAATCCATAGCTCTGGG 59.022 50.000 17.44 5.15 36.89 4.45
545 546 4.837860 ACTAGGAGAAATCCATAGCTCTGG 59.162 45.833 11.88 11.88 37.66 3.86
546 547 6.267471 AGAACTAGGAGAAATCCATAGCTCTG 59.733 42.308 0.00 0.00 0.00 3.35
547 548 6.381250 AGAACTAGGAGAAATCCATAGCTCT 58.619 40.000 0.00 0.57 0.00 4.09
548 549 6.664428 AGAACTAGGAGAAATCCATAGCTC 57.336 41.667 0.00 0.00 0.00 4.09
549 550 6.613271 TCAAGAACTAGGAGAAATCCATAGCT 59.387 38.462 0.00 0.00 0.00 3.32
550 551 6.821388 TCAAGAACTAGGAGAAATCCATAGC 58.179 40.000 0.00 0.00 0.00 2.97
551 552 7.441017 CCTCAAGAACTAGGAGAAATCCATAG 58.559 42.308 0.00 0.00 34.58 2.23
552 553 6.183361 GCCTCAAGAACTAGGAGAAATCCATA 60.183 42.308 0.00 0.00 34.58 2.74
553 554 5.397334 GCCTCAAGAACTAGGAGAAATCCAT 60.397 44.000 0.00 0.00 34.58 3.41
554 555 4.080863 GCCTCAAGAACTAGGAGAAATCCA 60.081 45.833 0.00 0.00 34.58 3.41
555 556 4.163268 AGCCTCAAGAACTAGGAGAAATCC 59.837 45.833 0.00 0.00 34.58 3.01
556 557 5.351948 AGCCTCAAGAACTAGGAGAAATC 57.648 43.478 0.00 0.00 34.58 2.17
557 558 5.163499 CGTAGCCTCAAGAACTAGGAGAAAT 60.163 44.000 0.00 0.00 34.58 2.17
558 559 4.158025 CGTAGCCTCAAGAACTAGGAGAAA 59.842 45.833 0.00 0.00 34.58 2.52
559 560 3.695060 CGTAGCCTCAAGAACTAGGAGAA 59.305 47.826 0.00 0.00 34.58 2.87
560 561 3.280295 CGTAGCCTCAAGAACTAGGAGA 58.720 50.000 0.00 0.00 34.58 3.71
561 562 2.359531 CCGTAGCCTCAAGAACTAGGAG 59.640 54.545 0.00 0.00 34.58 3.69
562 563 2.376109 CCGTAGCCTCAAGAACTAGGA 58.624 52.381 0.00 0.00 34.58 2.94
563 564 1.409427 CCCGTAGCCTCAAGAACTAGG 59.591 57.143 0.00 0.00 35.86 3.02
564 565 1.202428 GCCCGTAGCCTCAAGAACTAG 60.202 57.143 0.00 0.00 34.35 2.57
565 566 0.822164 GCCCGTAGCCTCAAGAACTA 59.178 55.000 0.00 0.00 34.35 2.24
566 567 1.597461 GCCCGTAGCCTCAAGAACT 59.403 57.895 0.00 0.00 34.35 3.01
567 568 4.203618 GCCCGTAGCCTCAAGAAC 57.796 61.111 0.00 0.00 34.35 3.01
576 577 0.108851 CCAACATTTTGGCCCGTAGC 60.109 55.000 0.00 0.00 46.09 3.58
585 586 6.930722 AGCAACTTCTAATTCCCAACATTTTG 59.069 34.615 0.00 0.00 0.00 2.44
586 587 7.066307 AGCAACTTCTAATTCCCAACATTTT 57.934 32.000 0.00 0.00 0.00 1.82
587 588 6.670695 AGCAACTTCTAATTCCCAACATTT 57.329 33.333 0.00 0.00 0.00 2.32
588 589 6.670695 AAGCAACTTCTAATTCCCAACATT 57.329 33.333 0.00 0.00 0.00 2.71
589 590 6.570378 CGAAAGCAACTTCTAATTCCCAACAT 60.570 38.462 0.00 0.00 0.00 2.71
590 591 5.278266 CGAAAGCAACTTCTAATTCCCAACA 60.278 40.000 0.00 0.00 0.00 3.33
591 592 5.154222 CGAAAGCAACTTCTAATTCCCAAC 58.846 41.667 0.00 0.00 0.00 3.77
592 593 4.825085 ACGAAAGCAACTTCTAATTCCCAA 59.175 37.500 0.00 0.00 0.00 4.12
593 594 4.394729 ACGAAAGCAACTTCTAATTCCCA 58.605 39.130 0.00 0.00 0.00 4.37
594 595 6.490566 TTACGAAAGCAACTTCTAATTCCC 57.509 37.500 0.00 0.00 0.00 3.97
595 596 6.800408 GGTTTACGAAAGCAACTTCTAATTCC 59.200 38.462 0.00 0.00 38.68 3.01
596 597 7.582352 AGGTTTACGAAAGCAACTTCTAATTC 58.418 34.615 10.59 0.00 41.18 2.17
597 598 7.506328 AGGTTTACGAAAGCAACTTCTAATT 57.494 32.000 10.59 0.00 41.18 1.40
598 599 7.506328 AAGGTTTACGAAAGCAACTTCTAAT 57.494 32.000 10.59 0.00 41.18 1.73
599 600 6.930667 AAGGTTTACGAAAGCAACTTCTAA 57.069 33.333 10.59 0.00 41.18 2.10
600 601 6.930667 AAAGGTTTACGAAAGCAACTTCTA 57.069 33.333 10.59 0.00 41.18 2.10
601 602 5.830000 AAAGGTTTACGAAAGCAACTTCT 57.170 34.783 10.59 0.00 41.18 2.85
602 603 6.880822 AAAAAGGTTTACGAAAGCAACTTC 57.119 33.333 10.59 0.00 41.18 3.01
623 624 6.591750 TCTACAAACAACTTCACCCAAAAA 57.408 33.333 0.00 0.00 0.00 1.94
624 625 6.391537 GTTCTACAAACAACTTCACCCAAAA 58.608 36.000 0.00 0.00 0.00 2.44
625 626 5.105675 GGTTCTACAAACAACTTCACCCAAA 60.106 40.000 0.00 0.00 0.00 3.28
626 627 4.399934 GGTTCTACAAACAACTTCACCCAA 59.600 41.667 0.00 0.00 0.00 4.12
627 628 3.949113 GGTTCTACAAACAACTTCACCCA 59.051 43.478 0.00 0.00 0.00 4.51
628 629 3.317149 GGGTTCTACAAACAACTTCACCC 59.683 47.826 0.00 0.00 34.82 4.61
629 630 3.949113 TGGGTTCTACAAACAACTTCACC 59.051 43.478 0.00 0.00 0.00 4.02
630 631 5.767816 ATGGGTTCTACAAACAACTTCAC 57.232 39.130 0.00 0.00 0.00 3.18
631 632 7.227873 TGATATGGGTTCTACAAACAACTTCA 58.772 34.615 0.00 0.00 0.00 3.02
632 633 7.681939 TGATATGGGTTCTACAAACAACTTC 57.318 36.000 0.00 0.00 0.00 3.01
633 634 7.065803 CGATGATATGGGTTCTACAAACAACTT 59.934 37.037 0.00 0.00 0.00 2.66
634 635 6.538742 CGATGATATGGGTTCTACAAACAACT 59.461 38.462 0.00 0.00 0.00 3.16
635 636 6.315393 ACGATGATATGGGTTCTACAAACAAC 59.685 38.462 0.00 0.00 0.00 3.32
636 637 6.315144 CACGATGATATGGGTTCTACAAACAA 59.685 38.462 0.00 0.00 0.00 2.83
637 638 5.815222 CACGATGATATGGGTTCTACAAACA 59.185 40.000 0.00 0.00 0.00 2.83
638 639 5.815740 ACACGATGATATGGGTTCTACAAAC 59.184 40.000 0.00 0.00 0.00 2.93
639 640 5.815222 CACACGATGATATGGGTTCTACAAA 59.185 40.000 0.00 0.00 0.00 2.83
640 641 5.128008 TCACACGATGATATGGGTTCTACAA 59.872 40.000 0.00 0.00 29.99 2.41
641 642 4.647399 TCACACGATGATATGGGTTCTACA 59.353 41.667 0.00 0.00 29.99 2.74
642 643 5.196341 TCACACGATGATATGGGTTCTAC 57.804 43.478 0.00 0.00 29.99 2.59
643 644 4.893524 ACTCACACGATGATATGGGTTCTA 59.106 41.667 0.00 0.00 36.48 2.10
644 645 3.706594 ACTCACACGATGATATGGGTTCT 59.293 43.478 0.00 0.00 36.48 3.01
645 646 4.060038 ACTCACACGATGATATGGGTTC 57.940 45.455 0.00 0.00 36.48 3.62
646 647 4.191544 CAACTCACACGATGATATGGGTT 58.808 43.478 0.00 0.00 36.48 4.11
647 648 3.197766 ACAACTCACACGATGATATGGGT 59.802 43.478 0.00 0.00 36.48 4.51
648 649 3.797039 ACAACTCACACGATGATATGGG 58.203 45.455 0.00 0.00 36.48 4.00
649 650 4.505556 CAGACAACTCACACGATGATATGG 59.494 45.833 0.00 0.00 36.48 2.74
650 651 5.105063 ACAGACAACTCACACGATGATATG 58.895 41.667 0.00 0.00 36.48 1.78
651 652 5.330455 ACAGACAACTCACACGATGATAT 57.670 39.130 0.00 0.00 36.48 1.63
652 653 4.783764 ACAGACAACTCACACGATGATA 57.216 40.909 0.00 0.00 36.48 2.15
653 654 3.667497 ACAGACAACTCACACGATGAT 57.333 42.857 0.00 0.00 36.48 2.45
654 655 3.452755 AACAGACAACTCACACGATGA 57.547 42.857 0.00 0.00 35.45 2.92
655 656 5.651172 TTAAACAGACAACTCACACGATG 57.349 39.130 0.00 0.00 0.00 3.84
656 657 6.671614 TTTTAAACAGACAACTCACACGAT 57.328 33.333 0.00 0.00 0.00 3.73
657 658 6.369340 TCTTTTTAAACAGACAACTCACACGA 59.631 34.615 0.00 0.00 0.00 4.35
658 659 6.539324 TCTTTTTAAACAGACAACTCACACG 58.461 36.000 0.00 0.00 0.00 4.49
659 660 8.911247 ATTCTTTTTAAACAGACAACTCACAC 57.089 30.769 3.53 0.00 0.00 3.82
693 694 6.151648 GGTAACCCCTAATGTGGTAGTTTTTC 59.848 42.308 0.00 0.00 33.52 2.29
812 814 6.719829 AGGTAAGCTGTTAAACTGGCTAAAAT 59.280 34.615 0.00 0.00 34.40 1.82
937 943 1.895231 GGTCGGCCGTTTTGACCTT 60.895 57.895 27.15 0.00 46.86 3.50
959 966 0.613292 GGAGAGGAGTGAGTGAGCCA 60.613 60.000 0.00 0.00 0.00 4.75
1000 1008 5.299279 AGAAAGAGAGGAAGAAGATAGCTCG 59.701 44.000 0.00 0.00 0.00 5.03
1006 1016 5.341169 AGGTGAGAAAGAGAGGAAGAAGAT 58.659 41.667 0.00 0.00 0.00 2.40
1070 1080 1.133790 GGATGACTCATTGCTGTTGGC 59.866 52.381 0.00 0.00 42.22 4.52
1091 1101 2.490509 TGTACTCATCATCGTCGGTGTT 59.509 45.455 5.22 0.00 0.00 3.32
1156 1167 5.952387 AGCATAGGAGAGAATAGAGTGAGT 58.048 41.667 0.00 0.00 0.00 3.41
1224 1235 7.040755 CCACAACACCTCACACATAAGAAATAA 60.041 37.037 0.00 0.00 0.00 1.40
1227 1239 4.578516 CCACAACACCTCACACATAAGAAA 59.421 41.667 0.00 0.00 0.00 2.52
1285 1298 3.513912 ACTTGGATCTATCACCGTGTCAA 59.486 43.478 0.00 0.00 0.00 3.18
1538 1556 1.419381 TGAACACCACACCAGCTCTA 58.581 50.000 0.00 0.00 0.00 2.43
1666 1684 9.696917 AAATCCAATCAAATTCAGTTACAGAAC 57.303 29.630 0.00 0.00 35.64 3.01
1800 1844 6.272822 TCTTCTCATGATACATATCCCACG 57.727 41.667 0.00 0.00 31.71 4.94
1843 1887 4.968080 ACCTCTATCTCATGAGCCTCTTTT 59.032 41.667 18.36 0.00 0.00 2.27
1979 2023 0.675083 TTGATTGCCTGGCTTGTGTG 59.325 50.000 21.03 0.00 0.00 3.82
2012 2065 2.419324 GCTCCTCAAGTTGATGCTTCTG 59.581 50.000 5.91 0.00 0.00 3.02
2232 2286 2.795329 TCATCTTGTCCAGCTTTTCCC 58.205 47.619 0.00 0.00 0.00 3.97
2251 2305 5.760253 TCACTCCTTCATGACAACTTCTTTC 59.240 40.000 0.00 0.00 0.00 2.62
2332 2387 8.411683 GCATATTTTCATCAGACTCCTTCATTT 58.588 33.333 0.00 0.00 0.00 2.32
2453 2561 9.836864 ACATAACATCATCTTAGAGCATTACAA 57.163 29.630 0.00 0.00 0.00 2.41
2603 2729 4.053295 AGTTTGTGCAATCTGTGAAATGC 58.947 39.130 0.00 0.00 39.22 3.56
2697 2843 7.934120 AGCAAGTTTTAGTTATTCTGAGACAGT 59.066 33.333 0.00 0.00 32.61 3.55
2698 2844 8.316640 AGCAAGTTTTAGTTATTCTGAGACAG 57.683 34.615 0.00 0.00 0.00 3.51
2699 2845 9.772973 TTAGCAAGTTTTAGTTATTCTGAGACA 57.227 29.630 0.00 0.00 0.00 3.41
2701 2847 9.772973 TGTTAGCAAGTTTTAGTTATTCTGAGA 57.227 29.630 0.00 0.00 0.00 3.27
2702 2848 9.813080 GTGTTAGCAAGTTTTAGTTATTCTGAG 57.187 33.333 0.00 0.00 0.00 3.35
2703 2849 9.555727 AGTGTTAGCAAGTTTTAGTTATTCTGA 57.444 29.630 0.00 0.00 0.00 3.27
2704 2850 9.599322 CAGTGTTAGCAAGTTTTAGTTATTCTG 57.401 33.333 0.00 0.00 0.00 3.02
2705 2851 9.555727 TCAGTGTTAGCAAGTTTTAGTTATTCT 57.444 29.630 0.00 0.00 0.00 2.40
2708 2854 9.555727 TCTTCAGTGTTAGCAAGTTTTAGTTAT 57.444 29.630 0.00 0.00 0.00 1.89
2709 2855 8.951787 TCTTCAGTGTTAGCAAGTTTTAGTTA 57.048 30.769 0.00 0.00 0.00 2.24
2710 2856 7.859325 TCTTCAGTGTTAGCAAGTTTTAGTT 57.141 32.000 0.00 0.00 0.00 2.24
2711 2857 8.451908 AATCTTCAGTGTTAGCAAGTTTTAGT 57.548 30.769 0.00 0.00 0.00 2.24
2713 2859 9.555727 ACTAATCTTCAGTGTTAGCAAGTTTTA 57.444 29.630 0.00 0.00 0.00 1.52
2714 2860 8.345565 CACTAATCTTCAGTGTTAGCAAGTTTT 58.654 33.333 0.00 0.00 38.86 2.43
2715 2861 7.715249 TCACTAATCTTCAGTGTTAGCAAGTTT 59.285 33.333 2.70 0.00 43.21 2.66
2716 2862 7.171678 GTCACTAATCTTCAGTGTTAGCAAGTT 59.828 37.037 2.70 0.00 43.21 2.66
2760 2919 5.011329 TGGAACTACCTATGTCAGTTTCGTT 59.989 40.000 0.00 0.00 39.86 3.85
2783 2942 5.409643 AAGTTTCATCAGTTTCGTCAGTG 57.590 39.130 0.00 0.00 0.00 3.66
3014 3179 4.163552 CAAGCTACATCACATGCAAACAG 58.836 43.478 0.00 0.00 0.00 3.16
3121 3286 1.534163 GTGATCATGCCCATCGACATG 59.466 52.381 0.00 7.27 44.05 3.21
3162 3327 3.914579 AAGCAGCGCATGGAGCAGT 62.915 57.895 11.47 0.00 46.13 4.40
3194 3359 3.169099 CAGAGGAAGTGAGGAAGAAGGA 58.831 50.000 0.00 0.00 0.00 3.36
3238 3404 1.609580 GGTTGCGATGAGGTACACCAA 60.610 52.381 0.38 0.00 38.89 3.67
3252 3418 5.258456 TCCTAGACTACATAAAGGTTGCG 57.742 43.478 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.