Multiple sequence alignment - TraesCS5D01G294100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G294100 chr5D 100.000 8831 0 0 1 8831 391038264 391047094 0.000000e+00 16308.0
1 TraesCS5D01G294100 chr5D 84.460 695 96 9 2 686 387815768 387815076 0.000000e+00 675.0
2 TraesCS5D01G294100 chr5D 82.064 591 86 15 2854 3435 521497268 521496689 3.710000e-133 486.0
3 TraesCS5D01G294100 chr5D 76.557 819 148 35 3142 3939 409334409 409335204 8.250000e-110 409.0
4 TraesCS5D01G294100 chr5D 91.480 223 17 2 3714 3935 521496646 521496425 1.110000e-78 305.0
5 TraesCS5D01G294100 chr5D 77.384 451 64 18 4048 4478 521496402 521495970 5.330000e-57 233.0
6 TraesCS5D01G294100 chr5A 92.397 6142 278 91 2083 8129 494380506 494386553 0.000000e+00 8580.0
7 TraesCS5D01G294100 chr5A 92.960 2159 107 22 1289 3424 512970750 512972886 0.000000e+00 3103.0
8 TraesCS5D01G294100 chr5A 89.676 1947 134 19 2781 4697 512974143 512976052 0.000000e+00 2420.0
9 TraesCS5D01G294100 chr5A 90.185 1243 73 22 3950 5162 512972899 512974122 0.000000e+00 1574.0
10 TraesCS5D01G294100 chr5A 95.941 813 23 7 1209 2014 494379688 494380497 0.000000e+00 1310.0
11 TraesCS5D01G294100 chr5A 82.192 949 131 26 2513 3435 649851653 649850717 0.000000e+00 782.0
12 TraesCS5D01G294100 chr5A 90.339 383 20 8 741 1117 494378797 494379168 3.710000e-133 486.0
13 TraesCS5D01G294100 chr5A 82.151 437 55 14 5739 6169 649849960 649849541 3.920000e-93 353.0
14 TraesCS5D01G294100 chr5A 90.667 225 18 3 3712 3935 649850661 649850439 6.700000e-76 296.0
15 TraesCS5D01G294100 chr5A 92.021 188 13 1 7196 7381 380960243 380960430 6.800000e-66 263.0
16 TraesCS5D01G294100 chr5A 93.478 46 1 2 3471 3515 649850713 649850669 5.720000e-07 67.6
17 TraesCS5D01G294100 chr5B 95.170 3892 104 36 4290 8129 471301806 471305665 0.000000e+00 6069.0
18 TraesCS5D01G294100 chr5B 95.509 3073 99 17 1202 4264 471298647 471301690 0.000000e+00 4874.0
19 TraesCS5D01G294100 chr5B 94.209 708 38 3 8125 8831 510562906 510562201 0.000000e+00 1077.0
20 TraesCS5D01G294100 chr5B 87.588 709 69 12 8125 8831 538263004 538262313 0.000000e+00 804.0
21 TraesCS5D01G294100 chr5B 94.755 286 3 7 825 1104 471298014 471298293 1.360000e-117 435.0
22 TraesCS5D01G294100 chr5B 97.436 39 1 0 4261 4299 471301762 471301800 5.720000e-07 67.6
23 TraesCS5D01G294100 chr4D 97.440 664 16 1 8169 8831 302348159 302347496 0.000000e+00 1131.0
24 TraesCS5D01G294100 chr4A 94.633 708 35 3 8125 8831 710417517 710418222 0.000000e+00 1094.0
25 TraesCS5D01G294100 chr6B 94.358 709 35 5 8125 8831 534226540 534227245 0.000000e+00 1083.0
26 TraesCS5D01G294100 chr6B 87.764 711 65 18 8125 8831 559351330 559350638 0.000000e+00 811.0
27 TraesCS5D01G294100 chr4B 94.068 708 39 3 8125 8831 45204406 45203701 0.000000e+00 1072.0
28 TraesCS5D01G294100 chr3D 93.927 708 33 7 8127 8831 457396731 457396031 0.000000e+00 1061.0
29 TraesCS5D01G294100 chr3D 92.431 687 48 3 1 683 611892441 611891755 0.000000e+00 977.0
30 TraesCS5D01G294100 chr7D 92.958 710 41 6 8125 8831 635163382 635162679 0.000000e+00 1026.0
31 TraesCS5D01G294100 chr2A 88.905 685 65 3 1 683 638607466 638606791 0.000000e+00 833.0
32 TraesCS5D01G294100 chr1D 88.707 673 59 8 1 667 38871587 38870926 0.000000e+00 806.0
33 TraesCS5D01G294100 chr1D 84.670 698 89 14 2 689 359714005 359714694 0.000000e+00 680.0
34 TraesCS5D01G294100 chr1D 93.617 188 10 1 7196 7381 24597713 24597900 6.750000e-71 279.0
35 TraesCS5D01G294100 chr2D 86.337 688 83 9 2 682 103036224 103035541 0.000000e+00 739.0
36 TraesCS5D01G294100 chr2B 86.357 689 75 15 8 683 647897959 647897277 0.000000e+00 734.0
37 TraesCS5D01G294100 chr2B 85.899 695 79 15 2 683 647859035 647859723 0.000000e+00 723.0
38 TraesCS5D01G294100 chr2B 83.819 686 102 6 2 679 24017608 24016924 2.080000e-180 643.0
39 TraesCS5D01G294100 chr2B 92.021 188 13 1 7196 7381 16670964 16671151 6.800000e-66 263.0
40 TraesCS5D01G294100 chr3B 93.085 188 11 1 7196 7381 807979568 807979381 3.140000e-69 274.0
41 TraesCS5D01G294100 chr7B 92.021 188 13 1 7196 7381 614501080 614501267 6.800000e-66 263.0
42 TraesCS5D01G294100 chr7B 92.021 188 13 1 7196 7381 614555565 614555752 6.800000e-66 263.0
43 TraesCS5D01G294100 chr6D 92.021 188 13 1 7196 7381 467430051 467429864 6.800000e-66 263.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G294100 chr5D 391038264 391047094 8830 False 16308.000000 16308 100.000000 1 8831 1 chr5D.!!$F1 8830
1 TraesCS5D01G294100 chr5D 387815076 387815768 692 True 675.000000 675 84.460000 2 686 1 chr5D.!!$R1 684
2 TraesCS5D01G294100 chr5D 409334409 409335204 795 False 409.000000 409 76.557000 3142 3939 1 chr5D.!!$F2 797
3 TraesCS5D01G294100 chr5D 521495970 521497268 1298 True 341.333333 486 83.642667 2854 4478 3 chr5D.!!$R2 1624
4 TraesCS5D01G294100 chr5A 494378797 494386553 7756 False 3458.666667 8580 92.892333 741 8129 3 chr5A.!!$F2 7388
5 TraesCS5D01G294100 chr5A 512970750 512976052 5302 False 2365.666667 3103 90.940333 1289 5162 3 chr5A.!!$F3 3873
6 TraesCS5D01G294100 chr5A 649849541 649851653 2112 True 374.650000 782 87.122000 2513 6169 4 chr5A.!!$R1 3656
7 TraesCS5D01G294100 chr5B 471298014 471305665 7651 False 2861.400000 6069 95.717500 825 8129 4 chr5B.!!$F1 7304
8 TraesCS5D01G294100 chr5B 510562201 510562906 705 True 1077.000000 1077 94.209000 8125 8831 1 chr5B.!!$R1 706
9 TraesCS5D01G294100 chr5B 538262313 538263004 691 True 804.000000 804 87.588000 8125 8831 1 chr5B.!!$R2 706
10 TraesCS5D01G294100 chr4D 302347496 302348159 663 True 1131.000000 1131 97.440000 8169 8831 1 chr4D.!!$R1 662
11 TraesCS5D01G294100 chr4A 710417517 710418222 705 False 1094.000000 1094 94.633000 8125 8831 1 chr4A.!!$F1 706
12 TraesCS5D01G294100 chr6B 534226540 534227245 705 False 1083.000000 1083 94.358000 8125 8831 1 chr6B.!!$F1 706
13 TraesCS5D01G294100 chr6B 559350638 559351330 692 True 811.000000 811 87.764000 8125 8831 1 chr6B.!!$R1 706
14 TraesCS5D01G294100 chr4B 45203701 45204406 705 True 1072.000000 1072 94.068000 8125 8831 1 chr4B.!!$R1 706
15 TraesCS5D01G294100 chr3D 457396031 457396731 700 True 1061.000000 1061 93.927000 8127 8831 1 chr3D.!!$R1 704
16 TraesCS5D01G294100 chr3D 611891755 611892441 686 True 977.000000 977 92.431000 1 683 1 chr3D.!!$R2 682
17 TraesCS5D01G294100 chr7D 635162679 635163382 703 True 1026.000000 1026 92.958000 8125 8831 1 chr7D.!!$R1 706
18 TraesCS5D01G294100 chr2A 638606791 638607466 675 True 833.000000 833 88.905000 1 683 1 chr2A.!!$R1 682
19 TraesCS5D01G294100 chr1D 38870926 38871587 661 True 806.000000 806 88.707000 1 667 1 chr1D.!!$R1 666
20 TraesCS5D01G294100 chr1D 359714005 359714694 689 False 680.000000 680 84.670000 2 689 1 chr1D.!!$F2 687
21 TraesCS5D01G294100 chr2D 103035541 103036224 683 True 739.000000 739 86.337000 2 682 1 chr2D.!!$R1 680
22 TraesCS5D01G294100 chr2B 647897277 647897959 682 True 734.000000 734 86.357000 8 683 1 chr2B.!!$R2 675
23 TraesCS5D01G294100 chr2B 647859035 647859723 688 False 723.000000 723 85.899000 2 683 1 chr2B.!!$F2 681
24 TraesCS5D01G294100 chr2B 24016924 24017608 684 True 643.000000 643 83.819000 2 679 1 chr2B.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 793 0.039527 AATTCAAACCGCTCCGCAAC 60.040 50.000 0.00 0.00 0.00 4.17 F
1125 1162 0.107361 TGCAGGTGATGATGGCTCAG 60.107 55.000 0.00 0.00 34.12 3.35 F
1138 1175 0.174617 GGCTCAGAAGACGAAGGAGG 59.825 60.000 0.00 0.00 0.00 4.30 F
1179 1216 0.175760 CGCTGCTTCTAGTAAGCCCA 59.824 55.000 18.30 5.94 42.36 5.36 F
1186 1223 0.619543 TCTAGTAAGCCCACCCACCC 60.620 60.000 0.00 0.00 0.00 4.61 F
1744 2220 0.886938 TTGCGGATTTGAAGCGTGGA 60.887 50.000 0.00 0.00 0.00 4.02 F
3285 3813 1.153549 GTCAGGATCGGTGACCAGC 60.154 63.158 13.45 0.00 38.75 4.85 F
3286 3814 1.609210 TCAGGATCGGTGACCAGCA 60.609 57.895 1.11 0.00 0.00 4.41 F
4732 7309 1.612726 GGTTGTGCTGAGAATGAGGCT 60.613 52.381 0.00 0.00 0.00 4.58 F
4911 7490 3.195825 AGGTTAAGAGTGTCCTTGATCCG 59.804 47.826 0.00 0.00 0.00 4.18 F
6703 9315 3.282021 ACCTGTAATACTTGCATGCTGG 58.718 45.455 20.33 13.57 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2561 1.061131 GAACGCACCAGAATCGATGTG 59.939 52.381 0.00 3.78 0.00 3.21 R
2611 3104 3.991121 GGAGACTACAGTTTGAGAGTTGC 59.009 47.826 0.00 0.00 0.00 4.17 R
2975 3502 5.296283 GCTCAGAGTGAAGCACATAATTCAT 59.704 40.000 0.00 0.00 37.72 2.57 R
3155 3683 3.691575 TCCTTGTCTGTTTGGTCAACAA 58.308 40.909 0.00 0.00 45.11 2.83 R
3259 3787 0.033011 ACCGATCCTGACCTAGTGCT 60.033 55.000 0.00 0.00 0.00 4.40 R
3326 5759 3.620488 AGGTTGTTTGAGACTTTGAGCA 58.380 40.909 0.00 0.00 0.00 4.26 R
4269 6826 3.281158 TGACATGCACATATGAACCCAG 58.719 45.455 10.38 0.00 0.00 4.45 R
4911 7490 5.295292 ACTGTTAGCATCATTAGCATCACAC 59.705 40.000 0.00 0.00 0.00 3.82 R
6510 9114 1.131638 TCTCCACTTGCTGGACAACT 58.868 50.000 0.00 0.00 44.99 3.16 R
6825 9439 3.282831 TGTGTACTGACATGACGTCTG 57.717 47.619 17.92 14.33 45.60 3.51 R
7876 10526 0.039180 TCTTCACCTGGCCTACGAGA 59.961 55.000 3.32 0.00 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 82 4.042271 ACCCAAACCTAAAATCATCGGT 57.958 40.909 0.00 0.00 0.00 4.69
94 96 0.460311 ATCGGTCGAAACCCTAGCTG 59.540 55.000 0.00 0.00 43.21 4.24
217 225 0.107752 GAGCAAAGCAGAGGAGAGGG 60.108 60.000 0.00 0.00 0.00 4.30
268 280 1.478510 ACGAGCTCACAGTAATCAGGG 59.521 52.381 15.40 0.00 0.00 4.45
269 281 1.751351 CGAGCTCACAGTAATCAGGGA 59.249 52.381 15.40 0.00 0.00 4.20
471 491 1.917872 TAATTCAGGTGTTGTGGCCC 58.082 50.000 0.00 0.00 0.00 5.80
473 493 2.351924 ATTCAGGTGTTGTGGCCCGT 62.352 55.000 0.00 0.00 0.00 5.28
493 513 3.671716 GTGGGTTGATTAGAGGAAACGT 58.328 45.455 0.00 0.00 0.00 3.99
583 607 4.819105 TGGTCTCGGACTAAAATGTCAT 57.181 40.909 4.41 0.00 38.61 3.06
621 645 8.956426 GTTTGGATATGATGAGGTTGAGTTTTA 58.044 33.333 0.00 0.00 0.00 1.52
688 713 4.403734 CTGGGTGCTTTTACCTCCTAAAA 58.596 43.478 0.00 0.00 40.66 1.52
699 724 8.788325 TTTTACCTCCTAAAAGAAGATAGTGC 57.212 34.615 0.00 0.00 31.75 4.40
700 725 7.490657 TTACCTCCTAAAAGAAGATAGTGCA 57.509 36.000 0.00 0.00 0.00 4.57
701 726 6.374417 ACCTCCTAAAAGAAGATAGTGCAA 57.626 37.500 0.00 0.00 0.00 4.08
702 727 6.779860 ACCTCCTAAAAGAAGATAGTGCAAA 58.220 36.000 0.00 0.00 0.00 3.68
703 728 7.231467 ACCTCCTAAAAGAAGATAGTGCAAAA 58.769 34.615 0.00 0.00 0.00 2.44
704 729 7.890655 ACCTCCTAAAAGAAGATAGTGCAAAAT 59.109 33.333 0.00 0.00 0.00 1.82
705 730 9.396022 CCTCCTAAAAGAAGATAGTGCAAAATA 57.604 33.333 0.00 0.00 0.00 1.40
707 732 9.959721 TCCTAAAAGAAGATAGTGCAAAATACT 57.040 29.630 0.00 0.00 0.00 2.12
711 736 7.772332 AAGAAGATAGTGCAAAATACTACCG 57.228 36.000 0.00 0.00 33.80 4.02
712 737 6.281405 AGAAGATAGTGCAAAATACTACCGG 58.719 40.000 0.00 0.00 33.80 5.28
713 738 5.609533 AGATAGTGCAAAATACTACCGGT 57.390 39.130 13.98 13.98 33.80 5.28
714 739 6.720112 AGATAGTGCAAAATACTACCGGTA 57.280 37.500 14.95 14.95 33.80 4.02
715 740 6.746120 AGATAGTGCAAAATACTACCGGTAG 58.254 40.000 34.98 34.98 39.04 3.18
716 741 6.548622 AGATAGTGCAAAATACTACCGGTAGA 59.451 38.462 41.26 26.81 36.97 2.59
717 742 5.410355 AGTGCAAAATACTACCGGTAGAA 57.590 39.130 41.26 12.27 36.97 2.10
718 743 5.173664 AGTGCAAAATACTACCGGTAGAAC 58.826 41.667 41.26 24.41 36.97 3.01
719 744 5.046807 AGTGCAAAATACTACCGGTAGAACT 60.047 40.000 41.26 24.96 36.97 3.01
720 745 5.640783 GTGCAAAATACTACCGGTAGAACTT 59.359 40.000 41.26 27.58 36.97 2.66
721 746 6.813152 GTGCAAAATACTACCGGTAGAACTTA 59.187 38.462 41.26 25.83 36.97 2.24
722 747 7.009907 GTGCAAAATACTACCGGTAGAACTTAG 59.990 40.741 41.26 26.96 36.97 2.18
723 748 7.038048 GCAAAATACTACCGGTAGAACTTAGT 58.962 38.462 41.26 25.51 36.97 2.24
724 749 7.221645 GCAAAATACTACCGGTAGAACTTAGTC 59.778 40.741 41.26 21.59 36.97 2.59
725 750 6.610741 AATACTACCGGTAGAACTTAGTCG 57.389 41.667 41.26 17.18 36.97 4.18
726 751 4.207891 ACTACCGGTAGAACTTAGTCGA 57.792 45.455 41.26 6.66 36.97 4.20
727 752 4.579869 ACTACCGGTAGAACTTAGTCGAA 58.420 43.478 41.26 6.18 36.97 3.71
728 753 5.189180 ACTACCGGTAGAACTTAGTCGAAT 58.811 41.667 41.26 16.40 36.97 3.34
729 754 4.367386 ACCGGTAGAACTTAGTCGAATG 57.633 45.455 4.49 0.00 0.00 2.67
730 755 3.114065 CCGGTAGAACTTAGTCGAATGC 58.886 50.000 0.00 0.00 0.00 3.56
731 756 3.181489 CCGGTAGAACTTAGTCGAATGCT 60.181 47.826 0.00 0.00 0.00 3.79
732 757 4.036352 CGGTAGAACTTAGTCGAATGCTC 58.964 47.826 0.00 0.00 0.00 4.26
733 758 4.036352 GGTAGAACTTAGTCGAATGCTCG 58.964 47.826 0.00 0.00 46.87 5.03
734 759 2.531206 AGAACTTAGTCGAATGCTCGC 58.469 47.619 0.00 0.00 45.04 5.03
735 760 2.164624 AGAACTTAGTCGAATGCTCGCT 59.835 45.455 0.00 0.00 45.04 4.93
736 761 2.196295 ACTTAGTCGAATGCTCGCTC 57.804 50.000 0.00 0.00 45.04 5.03
737 762 1.746220 ACTTAGTCGAATGCTCGCTCT 59.254 47.619 0.00 0.00 45.04 4.09
738 763 2.164624 ACTTAGTCGAATGCTCGCTCTT 59.835 45.455 0.00 0.00 45.04 2.85
739 764 2.941453 TAGTCGAATGCTCGCTCTTT 57.059 45.000 0.00 0.00 45.04 2.52
740 765 2.941453 AGTCGAATGCTCGCTCTTTA 57.059 45.000 0.00 0.00 45.04 1.85
741 766 3.232213 AGTCGAATGCTCGCTCTTTAA 57.768 42.857 0.00 0.00 45.04 1.52
742 767 2.924290 AGTCGAATGCTCGCTCTTTAAC 59.076 45.455 0.00 0.00 45.04 2.01
743 768 1.917955 TCGAATGCTCGCTCTTTAACG 59.082 47.619 0.00 0.00 45.04 3.18
744 769 1.654105 CGAATGCTCGCTCTTTAACGT 59.346 47.619 0.00 0.00 38.45 3.99
745 770 2.284514 CGAATGCTCGCTCTTTAACGTC 60.285 50.000 0.00 0.00 38.45 4.34
746 771 1.269166 ATGCTCGCTCTTTAACGTCG 58.731 50.000 0.00 0.00 0.00 5.12
747 772 0.239082 TGCTCGCTCTTTAACGTCGA 59.761 50.000 0.00 0.00 0.00 4.20
753 778 4.938129 TCGCTCTTTAACGTCGAAAATTC 58.062 39.130 0.00 0.00 0.00 2.17
757 782 6.396148 CGCTCTTTAACGTCGAAAATTCAAAC 60.396 38.462 0.00 0.00 0.00 2.93
764 789 1.195900 TCGAAAATTCAAACCGCTCCG 59.804 47.619 0.00 0.00 0.00 4.63
768 793 0.039527 AATTCAAACCGCTCCGCAAC 60.040 50.000 0.00 0.00 0.00 4.17
774 799 0.889186 AACCGCTCCGCAACTCAAAT 60.889 50.000 0.00 0.00 0.00 2.32
775 800 1.135315 CCGCTCCGCAACTCAAATG 59.865 57.895 0.00 0.00 0.00 2.32
795 820 1.355005 GAGCGAGACTTTTCCAGCTC 58.645 55.000 0.00 0.00 41.55 4.09
940 965 0.478507 CTCTCTCTCTCCCTCCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
1018 1049 1.827399 AATGGTGAGTTCTCCCGCGT 61.827 55.000 4.92 0.00 0.00 6.01
1117 1154 1.221566 CGGTGGATGCAGGTGATGA 59.778 57.895 0.00 0.00 0.00 2.92
1118 1155 0.179037 CGGTGGATGCAGGTGATGAT 60.179 55.000 0.00 0.00 0.00 2.45
1119 1156 1.315690 GGTGGATGCAGGTGATGATG 58.684 55.000 0.00 0.00 0.00 3.07
1120 1157 1.315690 GTGGATGCAGGTGATGATGG 58.684 55.000 0.00 0.00 0.00 3.51
1121 1158 0.466739 TGGATGCAGGTGATGATGGC 60.467 55.000 0.00 0.00 0.00 4.40
1122 1159 0.178998 GGATGCAGGTGATGATGGCT 60.179 55.000 0.00 0.00 0.00 4.75
1123 1160 1.236628 GATGCAGGTGATGATGGCTC 58.763 55.000 0.00 0.00 0.00 4.70
1124 1161 0.549469 ATGCAGGTGATGATGGCTCA 59.451 50.000 0.00 0.00 35.41 4.26
1125 1162 0.107361 TGCAGGTGATGATGGCTCAG 60.107 55.000 0.00 0.00 34.12 3.35
1126 1163 0.179702 GCAGGTGATGATGGCTCAGA 59.820 55.000 0.00 0.00 34.12 3.27
1127 1164 1.407851 GCAGGTGATGATGGCTCAGAA 60.408 52.381 0.00 0.00 34.12 3.02
1128 1165 2.562635 CAGGTGATGATGGCTCAGAAG 58.437 52.381 0.00 0.00 34.12 2.85
1129 1166 2.169978 CAGGTGATGATGGCTCAGAAGA 59.830 50.000 0.00 0.00 34.12 2.87
1130 1167 2.170187 AGGTGATGATGGCTCAGAAGAC 59.830 50.000 0.00 0.00 34.12 3.01
1131 1168 2.200067 GTGATGATGGCTCAGAAGACG 58.800 52.381 0.00 0.00 34.12 4.18
1132 1169 2.102578 TGATGATGGCTCAGAAGACGA 58.897 47.619 0.00 0.00 34.12 4.20
1133 1170 2.497273 TGATGATGGCTCAGAAGACGAA 59.503 45.455 0.00 0.00 34.12 3.85
1134 1171 2.662006 TGATGGCTCAGAAGACGAAG 57.338 50.000 0.00 0.00 30.57 3.79
1135 1172 1.205655 TGATGGCTCAGAAGACGAAGG 59.794 52.381 0.00 0.00 30.57 3.46
1136 1173 1.478510 GATGGCTCAGAAGACGAAGGA 59.521 52.381 0.00 0.00 30.57 3.36
1137 1174 0.891373 TGGCTCAGAAGACGAAGGAG 59.109 55.000 0.00 0.00 30.57 3.69
1138 1175 0.174617 GGCTCAGAAGACGAAGGAGG 59.825 60.000 0.00 0.00 0.00 4.30
1139 1176 0.459411 GCTCAGAAGACGAAGGAGGC 60.459 60.000 0.00 0.00 0.00 4.70
1140 1177 0.179150 CTCAGAAGACGAAGGAGGCG 60.179 60.000 0.00 0.00 0.00 5.52
1141 1178 1.153745 CAGAAGACGAAGGAGGCGG 60.154 63.158 0.00 0.00 0.00 6.13
1142 1179 1.304217 AGAAGACGAAGGAGGCGGA 60.304 57.895 0.00 0.00 0.00 5.54
1143 1180 1.139947 GAAGACGAAGGAGGCGGAG 59.860 63.158 0.00 0.00 0.00 4.63
1144 1181 1.304217 AAGACGAAGGAGGCGGAGA 60.304 57.895 0.00 0.00 0.00 3.71
1145 1182 0.684805 AAGACGAAGGAGGCGGAGAT 60.685 55.000 0.00 0.00 0.00 2.75
1146 1183 1.104577 AGACGAAGGAGGCGGAGATC 61.105 60.000 0.00 0.00 0.00 2.75
1147 1184 1.379977 ACGAAGGAGGCGGAGATCA 60.380 57.895 0.00 0.00 0.00 2.92
1148 1185 1.066587 CGAAGGAGGCGGAGATCAC 59.933 63.158 0.00 0.00 0.00 3.06
1149 1186 1.066587 GAAGGAGGCGGAGATCACG 59.933 63.158 5.57 5.57 0.00 4.35
1150 1187 2.356818 GAAGGAGGCGGAGATCACGG 62.357 65.000 11.07 2.96 0.00 4.94
1151 1188 2.833582 GGAGGCGGAGATCACGGA 60.834 66.667 11.07 0.00 0.00 4.69
1152 1189 2.725008 GAGGCGGAGATCACGGAG 59.275 66.667 11.07 0.00 0.00 4.63
1153 1190 3.492311 GAGGCGGAGATCACGGAGC 62.492 68.421 11.07 4.16 0.00 4.70
1154 1191 3.838271 GGCGGAGATCACGGAGCA 61.838 66.667 11.07 0.00 0.00 4.26
1155 1192 2.279120 GCGGAGATCACGGAGCAG 60.279 66.667 11.07 0.00 0.00 4.24
1156 1193 2.415010 CGGAGATCACGGAGCAGG 59.585 66.667 0.00 0.00 0.00 4.85
1157 1194 2.121538 CGGAGATCACGGAGCAGGA 61.122 63.158 0.00 0.00 0.00 3.86
1158 1195 1.439644 GGAGATCACGGAGCAGGAC 59.560 63.158 0.00 0.00 0.00 3.85
1159 1196 1.040339 GGAGATCACGGAGCAGGACT 61.040 60.000 0.00 0.00 0.00 3.85
1160 1197 0.383949 GAGATCACGGAGCAGGACTC 59.616 60.000 0.00 0.00 45.45 3.36
1169 1206 2.264166 GCAGGACTCGCTGCTTCT 59.736 61.111 5.61 0.00 42.73 2.85
1170 1207 1.513158 GCAGGACTCGCTGCTTCTA 59.487 57.895 5.61 0.00 42.73 2.10
1171 1208 0.527385 GCAGGACTCGCTGCTTCTAG 60.527 60.000 5.61 0.00 42.73 2.43
1172 1209 0.814457 CAGGACTCGCTGCTTCTAGT 59.186 55.000 0.00 0.00 0.00 2.57
1173 1210 2.017782 CAGGACTCGCTGCTTCTAGTA 58.982 52.381 0.00 0.00 0.00 1.82
1174 1211 2.423892 CAGGACTCGCTGCTTCTAGTAA 59.576 50.000 0.00 0.00 0.00 2.24
1175 1212 2.685897 AGGACTCGCTGCTTCTAGTAAG 59.314 50.000 0.00 0.00 0.00 2.34
1176 1213 2.456010 GACTCGCTGCTTCTAGTAAGC 58.544 52.381 15.74 15.74 43.29 3.09
1177 1214 1.135333 ACTCGCTGCTTCTAGTAAGCC 59.865 52.381 18.30 8.03 42.36 4.35
1178 1215 0.460311 TCGCTGCTTCTAGTAAGCCC 59.540 55.000 18.30 11.51 42.36 5.19
1179 1216 0.175760 CGCTGCTTCTAGTAAGCCCA 59.824 55.000 18.30 5.94 42.36 5.36
1180 1217 1.657822 GCTGCTTCTAGTAAGCCCAC 58.342 55.000 18.30 8.66 42.36 4.61
1181 1218 1.744114 GCTGCTTCTAGTAAGCCCACC 60.744 57.143 18.30 6.20 42.36 4.61
1182 1219 0.909623 TGCTTCTAGTAAGCCCACCC 59.090 55.000 18.30 0.00 42.36 4.61
1183 1220 0.909623 GCTTCTAGTAAGCCCACCCA 59.090 55.000 13.02 0.00 37.30 4.51
1184 1221 1.407025 GCTTCTAGTAAGCCCACCCAC 60.407 57.143 13.02 0.00 37.30 4.61
1185 1222 1.209747 CTTCTAGTAAGCCCACCCACC 59.790 57.143 0.00 0.00 0.00 4.61
1186 1223 0.619543 TCTAGTAAGCCCACCCACCC 60.620 60.000 0.00 0.00 0.00 4.61
1187 1224 0.912487 CTAGTAAGCCCACCCACCCA 60.912 60.000 0.00 0.00 0.00 4.51
1188 1225 1.202769 TAGTAAGCCCACCCACCCAC 61.203 60.000 0.00 0.00 0.00 4.61
1189 1226 3.261677 TAAGCCCACCCACCCACC 61.262 66.667 0.00 0.00 0.00 4.61
1190 1227 3.821830 TAAGCCCACCCACCCACCT 62.822 63.158 0.00 0.00 0.00 4.00
1279 1744 4.668118 TTTCGTGCCGGTCGGTCC 62.668 66.667 17.85 1.32 37.65 4.46
1577 2053 2.350007 CGGCTAGAAGCGTCAGTAGATC 60.350 54.545 1.61 0.00 43.62 2.75
1677 2153 2.202570 CGTCTCGCTGTTACCCCG 60.203 66.667 0.00 0.00 0.00 5.73
1744 2220 0.886938 TTGCGGATTTGAAGCGTGGA 60.887 50.000 0.00 0.00 0.00 4.02
1972 2460 6.346598 CGCTTGCGTATGTAGTTAGCATTAAT 60.347 38.462 6.86 0.00 37.68 1.40
2039 2527 5.073965 TGGTTGGTTTACTAGTTTCCTCCAT 59.926 40.000 0.00 0.00 0.00 3.41
2047 2535 8.652290 GTTTACTAGTTTCCTCCATGATCCTAT 58.348 37.037 0.00 0.00 0.00 2.57
2048 2536 9.892444 TTTACTAGTTTCCTCCATGATCCTATA 57.108 33.333 0.00 0.00 0.00 1.31
2072 2561 5.047731 AGTTTTCTCTGGCAATTTCCTAAGC 60.048 40.000 0.00 0.00 0.00 3.09
2154 2643 4.992319 TCCTGTACGTGTGGAATTAGTTTG 59.008 41.667 0.00 0.00 0.00 2.93
2224 2713 3.612860 CGATTCGTAACTTCAAGTCCCTG 59.387 47.826 0.00 0.00 0.00 4.45
2225 2714 2.450609 TCGTAACTTCAAGTCCCTGC 57.549 50.000 0.00 0.00 0.00 4.85
2226 2715 1.968493 TCGTAACTTCAAGTCCCTGCT 59.032 47.619 0.00 0.00 0.00 4.24
2401 2894 5.936956 AGGAGTAAGATTTTCTGCTGTTCAG 59.063 40.000 0.00 0.00 44.21 3.02
2426 2919 1.471119 TCCAGTGGAGTACTAAGCGG 58.529 55.000 8.12 0.00 37.60 5.52
2455 2948 6.739331 TGATTGGGGTTTTACTGTTTGATT 57.261 33.333 0.00 0.00 0.00 2.57
2542 3035 3.407424 TTCTTGTGCTATGCTGTGAGT 57.593 42.857 0.00 0.00 0.00 3.41
2580 3073 8.267183 TGTTCTGCATTTAGGAATTATCTGAGA 58.733 33.333 0.00 0.00 0.00 3.27
2611 3104 4.038402 ACTTCTCTTGCAATGTTTGGGAAG 59.962 41.667 18.71 18.71 35.31 3.46
2824 3330 7.647907 AAATTGCAATGTTTTGATCTCTGTC 57.352 32.000 13.82 0.00 34.60 3.51
2845 3351 9.739276 TCTGTCCACTTAACAGATTTGATTATT 57.261 29.630 1.98 0.00 46.15 1.40
2881 3393 3.600448 ACCTGTATTTGCATGGGCTAT 57.400 42.857 0.00 0.00 41.91 2.97
3013 3540 6.390721 TCACTCTGAGCTTGTTTATCAGTAC 58.609 40.000 4.19 0.00 41.01 2.73
3022 3549 8.045176 AGCTTGTTTATCAGTACTCCAATTTC 57.955 34.615 0.00 0.00 0.00 2.17
3033 3560 9.330063 TCAGTACTCCAATTTCATATGATGTTC 57.670 33.333 6.17 0.00 0.00 3.18
3104 3632 8.929260 ATATGATCTGGTGAAAATCATAGCAA 57.071 30.769 9.40 0.00 42.53 3.91
3155 3683 7.039082 ACAGCTATTTGGATAACATTGGTGTTT 60.039 33.333 0.00 0.00 46.07 2.83
3259 3787 7.907389 AGTACTTCAATGATAAGTCTGTTCCA 58.093 34.615 0.00 0.00 38.18 3.53
3280 3808 1.763968 CACTAGGTCAGGATCGGTGA 58.236 55.000 0.00 0.00 0.00 4.02
3285 3813 1.153549 GTCAGGATCGGTGACCAGC 60.154 63.158 13.45 0.00 38.75 4.85
3286 3814 1.609210 TCAGGATCGGTGACCAGCA 60.609 57.895 1.11 0.00 0.00 4.41
3435 5868 7.181361 TGATTGATTGGATGGAGAAAGGTAAA 58.819 34.615 0.00 0.00 0.00 2.01
3917 6382 7.727331 TTTTGGATGCTAGGATTTGTTTTTG 57.273 32.000 0.00 0.00 0.00 2.44
4067 6535 4.353777 AGGCATAGGAGTTCAGTGTTCTA 58.646 43.478 0.00 0.00 0.00 2.10
4109 6583 7.444487 GTGTGAAAACTTAAGTTATGGAGGAGT 59.556 37.037 20.83 0.00 37.25 3.85
4139 6613 8.521176 TCACCTCTTGACAATTAGTACTAGTTC 58.479 37.037 7.63 0.00 0.00 3.01
4203 6685 9.319143 CAAAATTCTAGTACTGAAGGTATGAGG 57.681 37.037 5.39 0.00 32.56 3.86
4300 6872 3.056588 TGTGCATGTCATTGTCAGCTA 57.943 42.857 0.00 0.00 0.00 3.32
4732 7309 1.612726 GGTTGTGCTGAGAATGAGGCT 60.613 52.381 0.00 0.00 0.00 4.58
4846 7425 3.622163 CAGCATCTGTCCAGAATTCTGTC 59.378 47.826 29.03 22.02 42.27 3.51
4847 7426 3.262660 AGCATCTGTCCAGAATTCTGTCA 59.737 43.478 29.03 24.59 42.27 3.58
4911 7490 3.195825 AGGTTAAGAGTGTCCTTGATCCG 59.804 47.826 0.00 0.00 0.00 4.18
5110 7691 6.199908 CCTTTTTGCATGAAAATGTTCGTACA 59.800 34.615 0.00 0.00 36.46 2.90
5117 7698 7.748683 TGCATGAAAATGTTCGTACAGTATTTC 59.251 33.333 16.72 16.72 37.77 2.17
5166 7753 6.590656 TTCCCTGACATTACATAATCCCTT 57.409 37.500 0.00 0.00 0.00 3.95
5248 7835 8.246430 ACATTTATTCCATGATGCTCTCATTT 57.754 30.769 0.00 0.00 42.07 2.32
5249 7836 9.358406 ACATTTATTCCATGATGCTCTCATTTA 57.642 29.630 0.00 0.00 42.07 1.40
5522 8118 5.655488 CTCAAGAGACATGGGTACTGTTAG 58.345 45.833 0.00 0.00 0.00 2.34
5567 8163 7.446106 ACTACCCTGACATATCATTGGTAAA 57.554 36.000 4.63 0.00 39.66 2.01
5730 8327 7.041644 CCTTGATACACTTTACAAGTTTTCCGA 60.042 37.037 0.00 0.00 40.46 4.55
5988 8590 7.117379 GGTCAACCTAACTAACAGTATTGTGTC 59.883 40.741 0.00 0.00 37.67 3.67
6074 8678 8.507249 CAAAACACCCTACATAAAGAAAGAGAG 58.493 37.037 0.00 0.00 0.00 3.20
6186 8790 5.163622 CCCTTGATGGTTATGCTGTTAACAG 60.164 44.000 27.85 27.85 46.40 3.16
6479 9083 4.647399 ACTGTAGCCTCTATTCTTCTGGAC 59.353 45.833 0.00 0.00 0.00 4.02
6503 9107 7.262048 ACGGTTCACATGTTATTTGTTCTTTT 58.738 30.769 0.00 0.00 0.00 2.27
6550 9154 8.278639 TGGAGAAGAATAAACCAGCCATTAATA 58.721 33.333 0.00 0.00 0.00 0.98
6585 9189 6.403866 TTCCTAAAAAGATTTGCTGCTGAA 57.596 33.333 0.00 0.00 0.00 3.02
6586 9190 6.594788 TCCTAAAAAGATTTGCTGCTGAAT 57.405 33.333 0.00 1.23 0.00 2.57
6587 9191 6.392354 TCCTAAAAAGATTTGCTGCTGAATG 58.608 36.000 0.00 0.00 0.00 2.67
6588 9192 5.579511 CCTAAAAAGATTTGCTGCTGAATGG 59.420 40.000 0.00 0.00 0.00 3.16
6685 9297 9.883142 TTTCTTCATGAAAAATGTTGTTTACCT 57.117 25.926 9.88 0.00 41.23 3.08
6703 9315 3.282021 ACCTGTAATACTTGCATGCTGG 58.718 45.455 20.33 13.57 0.00 4.85
6754 9367 9.290988 TGGAAAGCTTCATAAGTTGTTATGTTA 57.709 29.630 0.00 0.00 44.19 2.41
6869 9513 2.355197 TCCATGTGATGCGGTTTACTG 58.645 47.619 0.00 0.00 0.00 2.74
7011 9655 7.638638 ATCACTGATGAAATGGTATGACCATCA 60.639 37.037 11.46 7.85 46.65 3.07
7068 9712 2.629137 TGCAACTCATTTGTGCATTCCT 59.371 40.909 0.00 0.00 37.54 3.36
7103 9747 4.891260 TCTCTGTTATATCATGCAGGCAG 58.109 43.478 0.00 0.00 0.00 4.85
7114 9758 2.512692 TGCAGGCAGTTGATACCAAT 57.487 45.000 0.00 0.00 34.39 3.16
7340 9986 3.687102 CGCACACGGGACCTACCA 61.687 66.667 0.00 0.00 41.20 3.25
7461 10109 1.942657 GCAGTGTTGAGACTGAGCAAA 59.057 47.619 11.95 0.00 45.39 3.68
7579 10227 1.412343 GGATCAGGAAGTCTCTGGCTC 59.588 57.143 0.00 0.00 33.36 4.70
7680 10328 8.814931 TCACTTAACCAAAATGATCAAATCCAT 58.185 29.630 0.00 0.00 0.00 3.41
7692 10340 6.830736 TGATCAAATCCATAAATATCACGCG 58.169 36.000 3.53 3.53 0.00 6.01
7713 10361 1.339342 TGTGACATGCTCATCACCCTG 60.339 52.381 10.65 0.00 43.84 4.45
7729 10377 2.371841 ACCCTGTCAGTTGCATCAGTTA 59.628 45.455 0.00 0.00 0.00 2.24
7730 10378 3.009473 ACCCTGTCAGTTGCATCAGTTAT 59.991 43.478 0.00 0.00 0.00 1.89
7731 10379 3.624861 CCCTGTCAGTTGCATCAGTTATC 59.375 47.826 0.00 0.00 0.00 1.75
7732 10380 4.256110 CCTGTCAGTTGCATCAGTTATCA 58.744 43.478 0.00 0.00 0.00 2.15
7733 10381 4.331992 CCTGTCAGTTGCATCAGTTATCAG 59.668 45.833 0.00 0.00 0.00 2.90
7734 10382 4.898320 TGTCAGTTGCATCAGTTATCAGT 58.102 39.130 0.00 0.00 0.00 3.41
7735 10383 5.308014 TGTCAGTTGCATCAGTTATCAGTT 58.692 37.500 0.00 0.00 0.00 3.16
7736 10384 5.764686 TGTCAGTTGCATCAGTTATCAGTTT 59.235 36.000 0.00 0.00 0.00 2.66
7737 10385 6.262944 TGTCAGTTGCATCAGTTATCAGTTTT 59.737 34.615 0.00 0.00 0.00 2.43
7738 10386 6.580041 GTCAGTTGCATCAGTTATCAGTTTTG 59.420 38.462 0.00 0.00 0.00 2.44
7739 10387 6.262944 TCAGTTGCATCAGTTATCAGTTTTGT 59.737 34.615 0.00 0.00 0.00 2.83
7741 10389 7.535258 CAGTTGCATCAGTTATCAGTTTTGTAC 59.465 37.037 0.00 0.00 0.00 2.90
7742 10390 7.445402 AGTTGCATCAGTTATCAGTTTTGTACT 59.555 33.333 0.00 0.00 37.68 2.73
7763 10411 8.038351 TGTACTGCATGAAACTATGTAAGCTTA 58.962 33.333 0.86 0.86 0.00 3.09
7865 10515 1.884926 GGAATCGCAAGGAGCCTCG 60.885 63.158 0.00 0.00 41.38 4.63
8007 10660 1.866943 TCCTTGTCCCTAGCCCTATCT 59.133 52.381 0.00 0.00 0.00 1.98
8035 10688 3.982058 AGCAAAACGTAAACGAGAGAGAG 59.018 43.478 9.86 0.00 43.02 3.20
8036 10689 3.979495 GCAAAACGTAAACGAGAGAGAGA 59.021 43.478 9.86 0.00 43.02 3.10
8037 10690 4.088781 GCAAAACGTAAACGAGAGAGAGAG 59.911 45.833 9.86 0.00 43.02 3.20
8038 10691 5.450171 CAAAACGTAAACGAGAGAGAGAGA 58.550 41.667 9.86 0.00 43.02 3.10
8092 10747 5.192927 TGATGTTTGTTTCACTGGAGACTT 58.807 37.500 0.00 0.00 0.00 3.01
8093 10748 4.963276 TGTTTGTTTCACTGGAGACTTG 57.037 40.909 0.00 0.00 0.00 3.16
8094 10749 4.331968 TGTTTGTTTCACTGGAGACTTGT 58.668 39.130 0.00 0.00 0.00 3.16
8095 10750 5.492895 TGTTTGTTTCACTGGAGACTTGTA 58.507 37.500 0.00 0.00 0.00 2.41
8097 10752 4.067972 TGTTTCACTGGAGACTTGTACC 57.932 45.455 0.00 0.00 0.00 3.34
8098 10753 3.057734 GTTTCACTGGAGACTTGTACCG 58.942 50.000 0.00 0.00 0.00 4.02
8099 10754 0.601558 TCACTGGAGACTTGTACCGC 59.398 55.000 0.00 0.00 0.00 5.68
8100 10755 0.732880 CACTGGAGACTTGTACCGCG 60.733 60.000 0.00 0.00 0.00 6.46
8101 10756 0.892358 ACTGGAGACTTGTACCGCGA 60.892 55.000 8.23 0.00 0.00 5.87
8205 10862 2.191786 AATCCCGGTCGATTGCACCA 62.192 55.000 0.00 0.00 32.89 4.17
8221 10878 2.954318 GCACCATGAACTATGCAATCCT 59.046 45.455 0.00 0.00 38.00 3.24
8447 11109 1.623811 GACCAACCAAGAGCCACTAGA 59.376 52.381 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 82 2.163010 CGAAGTACAGCTAGGGTTTCGA 59.837 50.000 11.70 0.00 38.45 3.71
94 96 4.803098 AGGGTCATATATGGCGAAGTAC 57.197 45.455 12.78 1.83 31.93 2.73
191 193 1.611148 CCTCTGCTTTGCTCTGAGCTT 60.611 52.381 28.04 0.00 42.97 3.74
217 225 2.039084 TCTGCTTTCCTTTCCTCACTCC 59.961 50.000 0.00 0.00 0.00 3.85
268 280 1.080025 CCCGTTCGGTGTCTTCCTC 60.080 63.158 10.36 0.00 0.00 3.71
269 281 3.057337 CCCGTTCGGTGTCTTCCT 58.943 61.111 10.36 0.00 0.00 3.36
379 393 1.896660 GGGGCGACAAAGCTCACAA 60.897 57.895 0.00 0.00 39.95 3.33
380 394 2.281484 GGGGCGACAAAGCTCACA 60.281 61.111 0.00 0.00 39.95 3.58
438 452 5.183140 CACCTGAATTAAACCTGTCGGATTT 59.817 40.000 0.00 0.00 0.00 2.17
440 459 4.261801 CACCTGAATTAAACCTGTCGGAT 58.738 43.478 0.00 0.00 0.00 4.18
471 491 2.671396 CGTTTCCTCTAATCAACCCACG 59.329 50.000 0.00 0.00 0.00 4.94
473 493 3.325425 TGACGTTTCCTCTAATCAACCCA 59.675 43.478 0.00 0.00 0.00 4.51
583 607 7.774625 TCATCATATCCAAACTTGCACTCAATA 59.225 33.333 0.00 0.00 0.00 1.90
660 684 1.353358 GGTAAAAGCACCCAGGTACCT 59.647 52.381 9.21 9.21 31.91 3.08
688 713 6.127140 ACCGGTAGTATTTTGCACTATCTTCT 60.127 38.462 4.49 0.00 31.46 2.85
689 714 6.047231 ACCGGTAGTATTTTGCACTATCTTC 58.953 40.000 4.49 0.00 31.46 2.87
690 715 5.985911 ACCGGTAGTATTTTGCACTATCTT 58.014 37.500 4.49 0.00 31.46 2.40
691 716 5.609533 ACCGGTAGTATTTTGCACTATCT 57.390 39.130 4.49 0.00 31.46 1.98
692 717 6.742109 TCTACCGGTAGTATTTTGCACTATC 58.258 40.000 34.80 0.00 34.84 2.08
693 718 6.720112 TCTACCGGTAGTATTTTGCACTAT 57.280 37.500 34.80 0.00 34.84 2.12
694 719 6.153340 AGTTCTACCGGTAGTATTTTGCACTA 59.847 38.462 34.80 13.37 34.84 2.74
695 720 5.046807 AGTTCTACCGGTAGTATTTTGCACT 60.047 40.000 34.80 21.69 34.84 4.40
696 721 5.173664 AGTTCTACCGGTAGTATTTTGCAC 58.826 41.667 34.80 20.27 34.84 4.57
697 722 5.410355 AGTTCTACCGGTAGTATTTTGCA 57.590 39.130 34.80 15.24 34.84 4.08
698 723 7.038048 ACTAAGTTCTACCGGTAGTATTTTGC 58.962 38.462 34.80 17.07 34.84 3.68
699 724 7.430502 CGACTAAGTTCTACCGGTAGTATTTTG 59.569 40.741 34.80 28.75 34.84 2.44
700 725 7.336931 TCGACTAAGTTCTACCGGTAGTATTTT 59.663 37.037 34.80 25.26 34.84 1.82
701 726 6.823689 TCGACTAAGTTCTACCGGTAGTATTT 59.176 38.462 34.80 29.47 34.84 1.40
702 727 6.349300 TCGACTAAGTTCTACCGGTAGTATT 58.651 40.000 34.80 27.85 34.84 1.89
703 728 5.918608 TCGACTAAGTTCTACCGGTAGTAT 58.081 41.667 34.80 22.75 34.84 2.12
704 729 5.339008 TCGACTAAGTTCTACCGGTAGTA 57.661 43.478 34.80 26.20 34.84 1.82
705 730 4.207891 TCGACTAAGTTCTACCGGTAGT 57.792 45.455 34.80 20.95 34.84 2.73
706 731 5.508872 CATTCGACTAAGTTCTACCGGTAG 58.491 45.833 32.05 32.05 34.56 3.18
707 732 4.201950 GCATTCGACTAAGTTCTACCGGTA 60.202 45.833 14.95 14.95 0.00 4.02
708 733 3.428589 GCATTCGACTAAGTTCTACCGGT 60.429 47.826 13.98 13.98 0.00 5.28
709 734 3.114065 GCATTCGACTAAGTTCTACCGG 58.886 50.000 0.00 0.00 0.00 5.28
710 735 4.030134 AGCATTCGACTAAGTTCTACCG 57.970 45.455 0.00 0.00 0.00 4.02
725 750 2.284514 CGACGTTAAAGAGCGAGCATTC 60.285 50.000 0.00 0.00 0.00 2.67
726 751 1.654105 CGACGTTAAAGAGCGAGCATT 59.346 47.619 0.00 0.00 0.00 3.56
727 752 1.135489 TCGACGTTAAAGAGCGAGCAT 60.135 47.619 0.00 0.00 0.00 3.79
728 753 0.239082 TCGACGTTAAAGAGCGAGCA 59.761 50.000 0.00 0.00 0.00 4.26
729 754 1.334054 TTCGACGTTAAAGAGCGAGC 58.666 50.000 0.00 0.00 32.22 5.03
730 755 4.563524 ATTTTCGACGTTAAAGAGCGAG 57.436 40.909 0.00 0.00 32.22 5.03
731 756 4.445052 TGAATTTTCGACGTTAAAGAGCGA 59.555 37.500 0.00 1.56 0.00 4.93
732 757 4.694177 TGAATTTTCGACGTTAAAGAGCG 58.306 39.130 0.00 0.00 0.00 5.03
733 758 6.129535 GGTTTGAATTTTCGACGTTAAAGAGC 60.130 38.462 0.00 0.00 0.00 4.09
734 759 6.084551 CGGTTTGAATTTTCGACGTTAAAGAG 59.915 38.462 0.00 0.00 0.00 2.85
735 760 5.902981 CGGTTTGAATTTTCGACGTTAAAGA 59.097 36.000 0.00 0.00 0.00 2.52
736 761 5.385615 GCGGTTTGAATTTTCGACGTTAAAG 60.386 40.000 0.00 0.00 0.00 1.85
737 762 4.437171 GCGGTTTGAATTTTCGACGTTAAA 59.563 37.500 0.00 0.00 0.00 1.52
738 763 3.967470 GCGGTTTGAATTTTCGACGTTAA 59.033 39.130 0.00 0.00 0.00 2.01
739 764 3.248125 AGCGGTTTGAATTTTCGACGTTA 59.752 39.130 0.00 0.00 0.00 3.18
740 765 2.032426 AGCGGTTTGAATTTTCGACGTT 59.968 40.909 0.00 0.00 0.00 3.99
741 766 1.600485 AGCGGTTTGAATTTTCGACGT 59.400 42.857 0.00 0.00 0.00 4.34
742 767 2.230864 GAGCGGTTTGAATTTTCGACG 58.769 47.619 0.00 0.00 0.00 5.12
743 768 2.581637 GGAGCGGTTTGAATTTTCGAC 58.418 47.619 0.00 0.00 0.00 4.20
744 769 1.195900 CGGAGCGGTTTGAATTTTCGA 59.804 47.619 0.00 0.00 0.00 3.71
745 770 1.602191 CGGAGCGGTTTGAATTTTCG 58.398 50.000 0.00 0.00 0.00 3.46
764 789 1.129437 GTCTCGCTCCATTTGAGTTGC 59.871 52.381 0.00 0.00 43.48 4.17
768 793 3.126000 GGAAAAGTCTCGCTCCATTTGAG 59.874 47.826 0.00 0.00 44.47 3.02
774 799 0.320771 GCTGGAAAAGTCTCGCTCCA 60.321 55.000 0.00 0.00 36.53 3.86
775 800 0.036858 AGCTGGAAAAGTCTCGCTCC 60.037 55.000 0.00 0.00 0.00 4.70
795 820 3.066760 GGGTTCACCTTTTCACTTGTGAG 59.933 47.826 3.61 0.00 38.79 3.51
1117 1154 1.480137 CTCCTTCGTCTTCTGAGCCAT 59.520 52.381 0.00 0.00 0.00 4.40
1118 1155 0.891373 CTCCTTCGTCTTCTGAGCCA 59.109 55.000 0.00 0.00 0.00 4.75
1119 1156 0.174617 CCTCCTTCGTCTTCTGAGCC 59.825 60.000 0.00 0.00 0.00 4.70
1120 1157 0.459411 GCCTCCTTCGTCTTCTGAGC 60.459 60.000 0.00 0.00 0.00 4.26
1121 1158 0.179150 CGCCTCCTTCGTCTTCTGAG 60.179 60.000 0.00 0.00 0.00 3.35
1122 1159 1.595993 CCGCCTCCTTCGTCTTCTGA 61.596 60.000 0.00 0.00 0.00 3.27
1123 1160 1.153745 CCGCCTCCTTCGTCTTCTG 60.154 63.158 0.00 0.00 0.00 3.02
1124 1161 1.304217 TCCGCCTCCTTCGTCTTCT 60.304 57.895 0.00 0.00 0.00 2.85
1125 1162 1.139947 CTCCGCCTCCTTCGTCTTC 59.860 63.158 0.00 0.00 0.00 2.87
1126 1163 0.684805 ATCTCCGCCTCCTTCGTCTT 60.685 55.000 0.00 0.00 0.00 3.01
1127 1164 1.076632 ATCTCCGCCTCCTTCGTCT 60.077 57.895 0.00 0.00 0.00 4.18
1128 1165 1.360911 GATCTCCGCCTCCTTCGTC 59.639 63.158 0.00 0.00 0.00 4.20
1129 1166 1.379977 TGATCTCCGCCTCCTTCGT 60.380 57.895 0.00 0.00 0.00 3.85
1130 1167 1.066587 GTGATCTCCGCCTCCTTCG 59.933 63.158 0.00 0.00 0.00 3.79
1131 1168 1.066587 CGTGATCTCCGCCTCCTTC 59.933 63.158 0.00 0.00 0.00 3.46
1132 1169 2.427245 CCGTGATCTCCGCCTCCTT 61.427 63.158 0.00 0.00 0.00 3.36
1133 1170 2.835431 CCGTGATCTCCGCCTCCT 60.835 66.667 0.00 0.00 0.00 3.69
1134 1171 2.833582 TCCGTGATCTCCGCCTCC 60.834 66.667 0.00 0.00 0.00 4.30
1135 1172 2.725008 CTCCGTGATCTCCGCCTC 59.275 66.667 0.00 0.00 0.00 4.70
1136 1173 3.532155 GCTCCGTGATCTCCGCCT 61.532 66.667 0.00 0.00 0.00 5.52
1137 1174 3.781770 CTGCTCCGTGATCTCCGCC 62.782 68.421 0.00 0.00 0.00 6.13
1138 1175 2.279120 CTGCTCCGTGATCTCCGC 60.279 66.667 0.00 0.00 0.00 5.54
1139 1176 2.121538 TCCTGCTCCGTGATCTCCG 61.122 63.158 0.00 0.00 0.00 4.63
1140 1177 1.040339 AGTCCTGCTCCGTGATCTCC 61.040 60.000 0.00 0.00 0.00 3.71
1141 1178 0.383949 GAGTCCTGCTCCGTGATCTC 59.616 60.000 0.00 0.00 38.27 2.75
1142 1179 1.380403 CGAGTCCTGCTCCGTGATCT 61.380 60.000 0.00 0.00 41.10 2.75
1143 1180 1.064946 CGAGTCCTGCTCCGTGATC 59.935 63.158 0.00 0.00 41.10 2.92
1144 1181 3.069980 GCGAGTCCTGCTCCGTGAT 62.070 63.158 0.00 0.00 41.10 3.06
1145 1182 3.749064 GCGAGTCCTGCTCCGTGA 61.749 66.667 0.00 0.00 41.10 4.35
1146 1183 3.753434 AGCGAGTCCTGCTCCGTG 61.753 66.667 0.00 0.00 38.62 4.94
1147 1184 3.753434 CAGCGAGTCCTGCTCCGT 61.753 66.667 0.00 0.00 41.72 4.69
1153 1190 0.814457 ACTAGAAGCAGCGAGTCCTG 59.186 55.000 0.00 4.71 35.93 3.86
1154 1191 2.421751 TACTAGAAGCAGCGAGTCCT 57.578 50.000 0.00 0.00 0.00 3.85
1155 1192 2.796735 GCTTACTAGAAGCAGCGAGTCC 60.797 54.545 16.99 0.00 42.56 3.85
1156 1193 2.456010 GCTTACTAGAAGCAGCGAGTC 58.544 52.381 16.99 0.00 42.56 3.36
1157 1194 1.135333 GGCTTACTAGAAGCAGCGAGT 59.865 52.381 20.95 0.00 44.71 4.18
1158 1195 1.537135 GGGCTTACTAGAAGCAGCGAG 60.537 57.143 20.95 0.00 44.71 5.03
1159 1196 0.460311 GGGCTTACTAGAAGCAGCGA 59.540 55.000 20.95 0.00 44.71 4.93
1160 1197 0.175760 TGGGCTTACTAGAAGCAGCG 59.824 55.000 20.95 0.00 44.71 5.18
1161 1198 1.657822 GTGGGCTTACTAGAAGCAGC 58.342 55.000 20.95 11.74 44.71 5.25
1162 1199 1.134371 GGGTGGGCTTACTAGAAGCAG 60.134 57.143 20.95 4.33 44.71 4.24
1163 1200 0.909623 GGGTGGGCTTACTAGAAGCA 59.090 55.000 20.95 6.22 44.71 3.91
1164 1201 0.909623 TGGGTGGGCTTACTAGAAGC 59.090 55.000 14.78 14.78 42.30 3.86
1165 1202 1.209747 GGTGGGTGGGCTTACTAGAAG 59.790 57.143 0.00 0.00 0.00 2.85
1166 1203 1.282382 GGTGGGTGGGCTTACTAGAA 58.718 55.000 0.00 0.00 0.00 2.10
1167 1204 0.619543 GGGTGGGTGGGCTTACTAGA 60.620 60.000 0.00 0.00 0.00 2.43
1168 1205 0.912487 TGGGTGGGTGGGCTTACTAG 60.912 60.000 0.00 0.00 0.00 2.57
1169 1206 1.161355 TGGGTGGGTGGGCTTACTA 59.839 57.895 0.00 0.00 0.00 1.82
1170 1207 2.121689 TGGGTGGGTGGGCTTACT 60.122 61.111 0.00 0.00 0.00 2.24
1171 1208 2.035155 GTGGGTGGGTGGGCTTAC 59.965 66.667 0.00 0.00 0.00 2.34
1172 1209 3.261677 GGTGGGTGGGTGGGCTTA 61.262 66.667 0.00 0.00 0.00 3.09
1677 2153 4.021192 TGAAGGAAAACCCATCAAATCAGC 60.021 41.667 0.00 0.00 39.48 4.26
1744 2220 1.177401 GCCTCCCGAAAAGCAGATTT 58.823 50.000 0.00 0.00 0.00 2.17
1972 2460 2.091541 GAATCCACATTTCCAGCGGAA 58.908 47.619 6.01 6.01 40.27 4.30
2039 2527 6.560003 TTGCCAGAGAAAACTATAGGATCA 57.440 37.500 4.43 0.00 0.00 2.92
2047 2535 6.151144 GCTTAGGAAATTGCCAGAGAAAACTA 59.849 38.462 4.92 0.00 0.00 2.24
2048 2536 5.047731 GCTTAGGAAATTGCCAGAGAAAACT 60.048 40.000 4.92 0.00 0.00 2.66
2072 2561 1.061131 GAACGCACCAGAATCGATGTG 59.939 52.381 0.00 3.78 0.00 3.21
2154 2643 6.315393 TCAGCAATTAAATAGGAAACGAGACC 59.685 38.462 0.00 0.00 0.00 3.85
2224 2713 8.830580 TCTACATAGACAAAGCATTTTGATAGC 58.169 33.333 5.51 0.00 45.21 2.97
2401 2894 4.688021 CTTAGTACTCCACTGGAAGCATC 58.312 47.826 0.00 0.00 38.24 3.91
2426 2919 5.193679 ACAGTAAAACCCCAATCATAGAGC 58.806 41.667 0.00 0.00 0.00 4.09
2466 2959 5.009610 TCTGATTCAAACTGGCCAAAAGTAC 59.990 40.000 7.01 0.00 0.00 2.73
2542 3035 9.421806 CCTAAATGCAGAACATACATTGAAAAA 57.578 29.630 0.00 0.00 38.34 1.94
2587 3080 4.724399 TCCCAAACATTGCAAGAGAAGTA 58.276 39.130 4.94 0.00 0.00 2.24
2611 3104 3.991121 GGAGACTACAGTTTGAGAGTTGC 59.009 47.826 0.00 0.00 0.00 4.17
2881 3393 6.285224 TCTTCGATTAAACACCAAGAACAGA 58.715 36.000 0.00 0.00 0.00 3.41
2975 3502 5.296283 GCTCAGAGTGAAGCACATAATTCAT 59.704 40.000 0.00 0.00 37.72 2.57
3013 3540 9.293404 ACCTATGAACATCATATGAAATTGGAG 57.707 33.333 9.99 2.65 38.54 3.86
3155 3683 3.691575 TCCTTGTCTGTTTGGTCAACAA 58.308 40.909 0.00 0.00 45.11 2.83
3259 3787 0.033011 ACCGATCCTGACCTAGTGCT 60.033 55.000 0.00 0.00 0.00 4.40
3326 5759 3.620488 AGGTTGTTTGAGACTTTGAGCA 58.380 40.909 0.00 0.00 0.00 4.26
3533 5997 5.057149 GCATCATAAACACCTAGAATCGGT 58.943 41.667 0.00 0.00 34.38 4.69
3917 6382 6.482308 TCTTAGGAGCACAAAAGACTAACAAC 59.518 38.462 0.00 0.00 0.00 3.32
4139 6613 8.539674 GGAAAACTAACAGCAACTTACAAATTG 58.460 33.333 0.00 0.00 0.00 2.32
4203 6685 3.805207 ACCACACTGAAACCTCAACTAC 58.195 45.455 0.00 0.00 0.00 2.73
4269 6826 3.281158 TGACATGCACATATGAACCCAG 58.719 45.455 10.38 0.00 0.00 4.45
4732 7309 7.878495 AGGGGTTCTTGTTCCATATATTTACA 58.122 34.615 0.00 0.00 0.00 2.41
4846 7425 6.985117 TGAGAAATTGATCAAAAAGACCCTG 58.015 36.000 13.09 0.00 0.00 4.45
4847 7426 7.234166 ACATGAGAAATTGATCAAAAAGACCCT 59.766 33.333 13.09 3.25 0.00 4.34
4911 7490 5.295292 ACTGTTAGCATCATTAGCATCACAC 59.705 40.000 0.00 0.00 0.00 3.82
5166 7753 5.778241 TCAGATGGGCGAACCTAATAGAATA 59.222 40.000 0.00 0.00 41.11 1.75
5255 7842 9.839817 TTGTAGCAAGTATATTAGCACCAAATA 57.160 29.630 0.00 0.00 0.00 1.40
5256 7843 8.621286 GTTGTAGCAAGTATATTAGCACCAAAT 58.379 33.333 0.00 0.00 0.00 2.32
5387 7982 1.614903 ACAAACGGACATAGACCACGA 59.385 47.619 0.00 0.00 0.00 4.35
5522 8118 2.783135 TGGAAAGGACATCTGAAGCAC 58.217 47.619 0.00 0.00 0.00 4.40
5567 8163 4.313020 AAAGGGAAGATGACAGCAAGAT 57.687 40.909 0.00 0.00 0.00 2.40
5678 8275 5.686753 TGGTCTGTTTAAATACACTGGTGT 58.313 37.500 11.20 11.20 46.87 4.16
5690 8287 5.414454 GTGTATCAAGGCATGGTCTGTTTAA 59.586 40.000 0.00 0.00 0.00 1.52
5730 8327 3.181454 ACAAGCAGTTGTTAGTAGCAGGT 60.181 43.478 0.00 0.00 45.00 4.00
5988 8590 9.559732 TTAGTGAAGAACAATATATCATGTGGG 57.440 33.333 0.00 0.00 0.00 4.61
6074 8678 1.135199 CATTGTGCATGGCAACCTCTC 60.135 52.381 0.00 0.00 41.47 3.20
6186 8790 2.767960 AGAAATTCCCATGCATTGACCC 59.232 45.455 0.00 0.00 0.00 4.46
6397 9001 8.912988 TCAAAAAGGTTGACTTCATACAGAAAT 58.087 29.630 0.00 0.00 38.85 2.17
6399 9003 7.873719 TCAAAAAGGTTGACTTCATACAGAA 57.126 32.000 0.00 0.00 38.85 3.02
6479 9083 7.692908 AAAAGAACAAATAACATGTGAACCG 57.307 32.000 0.00 0.00 0.00 4.44
6503 9107 3.876914 CACTTGCTGGACAACTTTCACTA 59.123 43.478 0.00 0.00 33.68 2.74
6510 9114 1.131638 TCTCCACTTGCTGGACAACT 58.868 50.000 0.00 0.00 44.99 3.16
6559 9163 7.092716 TCAGCAGCAAATCTTTTTAGGAAATC 58.907 34.615 0.00 0.00 0.00 2.17
6568 9172 4.039488 TGACCATTCAGCAGCAAATCTTTT 59.961 37.500 0.00 0.00 0.00 2.27
6585 9189 4.669206 TCAACATGCAAAAACTGACCAT 57.331 36.364 0.00 0.00 0.00 3.55
6586 9190 4.099113 TGATCAACATGCAAAAACTGACCA 59.901 37.500 0.00 0.00 0.00 4.02
6587 9191 4.619973 TGATCAACATGCAAAAACTGACC 58.380 39.130 0.00 0.00 0.00 4.02
6588 9192 6.774354 ATTGATCAACATGCAAAAACTGAC 57.226 33.333 11.07 0.00 0.00 3.51
6685 9297 4.220693 AGACCAGCATGCAAGTATTACA 57.779 40.909 21.98 0.00 31.97 2.41
6703 9315 5.975939 GCTGATGCATTTTATCCAGAAAGAC 59.024 40.000 13.40 0.00 39.41 3.01
6754 9367 5.945784 TCCTAACAATGATTAGTTTGCAGCT 59.054 36.000 0.00 0.00 31.29 4.24
6825 9439 3.282831 TGTGTACTGACATGACGTCTG 57.717 47.619 17.92 14.33 45.60 3.51
6827 9441 5.459107 GGATAATGTGTACTGACATGACGTC 59.541 44.000 9.11 9.11 45.61 4.34
6830 9444 7.182361 CATGGATAATGTGTACTGACATGAC 57.818 40.000 0.00 0.00 38.04 3.06
6861 9505 5.915196 GTGAAGAGAACAAATGCAGTAAACC 59.085 40.000 0.00 0.00 0.00 3.27
6869 9513 7.928908 TGTATTTTGTGAAGAGAACAAATGC 57.071 32.000 2.86 0.00 44.57 3.56
7016 9660 2.410053 CAGAAGTAGTGCACGAAGCTTC 59.590 50.000 24.41 24.41 45.94 3.86
7044 9688 2.780065 TGCACAAATGAGTTGCAGAC 57.220 45.000 0.00 0.00 41.31 3.51
7068 9712 9.317827 TGATATAACAGAGATTGAGATGGATCA 57.682 33.333 0.00 0.00 0.00 2.92
7103 9747 2.102578 AGGCCTTGCATTGGTATCAAC 58.897 47.619 0.00 0.00 35.48 3.18
7334 9980 1.153409 CTGCTGCTGCTCTGGTAGG 60.153 63.158 17.00 0.00 40.48 3.18
7340 9986 2.775911 TGTTATTCTGCTGCTGCTCT 57.224 45.000 17.00 1.64 40.48 4.09
7461 10109 8.265055 ACTATACTACATATGTTGTGGTTGCTT 58.735 33.333 26.58 5.80 46.79 3.91
7579 10227 1.801512 TGCACATCGACTCTTCGCG 60.802 57.895 0.00 0.00 45.46 5.87
7692 10340 1.089920 GGGTGATGAGCATGTCACAC 58.910 55.000 14.12 8.26 44.99 3.82
7713 10361 5.869753 AACTGATAACTGATGCAACTGAC 57.130 39.130 7.85 0.00 0.00 3.51
7732 10380 7.510549 ACATAGTTTCATGCAGTACAAAACT 57.489 32.000 14.82 14.82 40.65 2.66
7733 10381 9.329913 CTTACATAGTTTCATGCAGTACAAAAC 57.670 33.333 0.00 0.00 31.74 2.43
7734 10382 8.020819 GCTTACATAGTTTCATGCAGTACAAAA 58.979 33.333 0.00 0.00 0.00 2.44
7735 10383 7.390440 AGCTTACATAGTTTCATGCAGTACAAA 59.610 33.333 0.00 0.00 0.00 2.83
7736 10384 6.878923 AGCTTACATAGTTTCATGCAGTACAA 59.121 34.615 0.00 0.00 0.00 2.41
7737 10385 6.406370 AGCTTACATAGTTTCATGCAGTACA 58.594 36.000 0.00 0.00 0.00 2.90
7738 10386 6.910536 AGCTTACATAGTTTCATGCAGTAC 57.089 37.500 0.00 0.00 0.00 2.73
7739 10387 8.879759 GTTAAGCTTACATAGTTTCATGCAGTA 58.120 33.333 5.45 0.00 0.00 2.74
7741 10389 7.148255 TGGTTAAGCTTACATAGTTTCATGCAG 60.148 37.037 5.45 0.00 0.00 4.41
7742 10390 6.657117 TGGTTAAGCTTACATAGTTTCATGCA 59.343 34.615 5.45 0.00 0.00 3.96
7743 10391 6.967199 GTGGTTAAGCTTACATAGTTTCATGC 59.033 38.462 5.45 0.00 0.00 4.06
7744 10392 7.415206 GGGTGGTTAAGCTTACATAGTTTCATG 60.415 40.741 5.45 0.00 0.00 3.07
7745 10393 6.602009 GGGTGGTTAAGCTTACATAGTTTCAT 59.398 38.462 5.45 0.00 0.00 2.57
7746 10394 5.941647 GGGTGGTTAAGCTTACATAGTTTCA 59.058 40.000 5.45 0.00 0.00 2.69
7747 10395 5.064325 CGGGTGGTTAAGCTTACATAGTTTC 59.936 44.000 5.45 0.00 0.00 2.78
7748 10396 4.939439 CGGGTGGTTAAGCTTACATAGTTT 59.061 41.667 5.45 0.00 0.00 2.66
7749 10397 4.019950 ACGGGTGGTTAAGCTTACATAGTT 60.020 41.667 5.45 0.00 0.00 2.24
7750 10398 3.516700 ACGGGTGGTTAAGCTTACATAGT 59.483 43.478 5.45 1.79 0.00 2.12
7751 10399 3.869246 CACGGGTGGTTAAGCTTACATAG 59.131 47.826 5.45 1.22 0.00 2.23
7752 10400 3.514706 TCACGGGTGGTTAAGCTTACATA 59.485 43.478 5.45 0.00 0.00 2.29
7753 10401 2.303600 TCACGGGTGGTTAAGCTTACAT 59.696 45.455 5.45 0.00 0.00 2.29
7754 10402 1.693062 TCACGGGTGGTTAAGCTTACA 59.307 47.619 5.45 0.00 0.00 2.41
7755 10403 2.460757 TCACGGGTGGTTAAGCTTAC 57.539 50.000 5.45 0.00 0.00 2.34
7763 10411 0.948678 CGACAAATTCACGGGTGGTT 59.051 50.000 0.00 0.00 0.00 3.67
7865 10515 1.488527 CCTACGAGATTAGTTGCGCC 58.511 55.000 4.18 0.00 0.00 6.53
7876 10526 0.039180 TCTTCACCTGGCCTACGAGA 59.961 55.000 3.32 0.00 0.00 4.04
8007 10660 4.569966 TCTCGTTTACGTTTTGCTACCAAA 59.430 37.500 0.00 0.00 38.33 3.28
8093 10748 3.600898 AAAGGTGGCCTCGCGGTAC 62.601 63.158 6.13 0.00 30.89 3.34
8094 10749 2.886134 AAAAGGTGGCCTCGCGGTA 61.886 57.895 6.13 0.00 30.89 4.02
8095 10750 4.265056 AAAAGGTGGCCTCGCGGT 62.265 61.111 6.13 0.00 30.89 5.68
8097 10752 4.404654 GCAAAAGGTGGCCTCGCG 62.405 66.667 3.32 0.00 30.89 5.87
8105 10760 2.827322 TCCATCATTCAGGCAAAAGGTG 59.173 45.455 0.00 0.00 0.00 4.00
8106 10761 3.173953 TCCATCATTCAGGCAAAAGGT 57.826 42.857 0.00 0.00 0.00 3.50
8107 10762 4.540359 TTTCCATCATTCAGGCAAAAGG 57.460 40.909 0.00 0.00 0.00 3.11
8205 10862 4.785346 AGACCAGGATTGCATAGTTCAT 57.215 40.909 0.00 0.00 0.00 2.57
8221 10878 4.668138 AGCCAGGGTTTAATTTAGACCA 57.332 40.909 15.75 0.00 35.11 4.02
8447 11109 2.674357 GTTGTTGTTCGTGGTGTAGTGT 59.326 45.455 0.00 0.00 0.00 3.55
8731 11398 6.918626 TGTTCACAATCTCAAAAAGTGTTCA 58.081 32.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.