Multiple sequence alignment - TraesCS5D01G293300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G293300 chr5D 100.000 4436 0 0 1 4436 390503143 390507578 0.000000e+00 8192.0
1 TraesCS5D01G293300 chr5D 81.231 1007 127 40 997 1964 390417847 390418830 0.000000e+00 756.0
2 TraesCS5D01G293300 chr5D 83.787 771 80 23 997 1743 390371481 390372230 0.000000e+00 689.0
3 TraesCS5D01G293300 chr5D 90.278 72 5 2 770 841 181883402 181883333 4.720000e-15 93.5
4 TraesCS5D01G293300 chr5A 89.646 1835 93 47 831 2607 493818084 493816289 0.000000e+00 2246.0
5 TraesCS5D01G293300 chr5A 85.097 1134 88 41 3359 4436 493813565 493812457 0.000000e+00 1083.0
6 TraesCS5D01G293300 chr5A 91.055 749 54 10 2635 3372 493815990 493815244 0.000000e+00 1000.0
7 TraesCS5D01G293300 chr5A 84.635 781 81 21 998 1742 493779348 493780125 0.000000e+00 741.0
8 TraesCS5D01G293300 chr5A 82.436 780 83 26 997 1743 493662177 493662935 2.250000e-177 632.0
9 TraesCS5D01G293300 chr5A 93.103 87 2 1 623 705 493825080 493824994 1.680000e-24 124.0
10 TraesCS5D01G293300 chr5A 85.897 78 10 1 770 847 612226775 612226851 1.020000e-11 82.4
11 TraesCS5D01G293300 chr5B 89.056 932 68 18 2689 3603 470621107 470622021 0.000000e+00 1125.0
12 TraesCS5D01G293300 chr5B 81.132 1007 129 39 997 1964 470512102 470513086 0.000000e+00 750.0
13 TraesCS5D01G293300 chr5B 83.420 772 81 25 997 1743 470436015 470436764 0.000000e+00 673.0
14 TraesCS5D01G293300 chr5B 80.964 809 83 42 3643 4436 470622659 470623411 3.850000e-160 575.0
15 TraesCS5D01G293300 chr5B 94.785 326 14 1 1192 1517 470604047 470604369 5.120000e-139 505.0
16 TraesCS5D01G293300 chr5B 85.714 483 43 20 1574 2051 470604384 470604845 1.850000e-133 486.0
17 TraesCS5D01G293300 chr5B 81.481 513 85 7 998 1502 469125060 469124550 3.190000e-111 412.0
18 TraesCS5D01G293300 chr5B 97.059 238 7 0 905 1142 470603811 470604048 6.910000e-108 401.0
19 TraesCS5D01G293300 chr5B 78.378 481 71 18 147 614 470602104 470602564 9.390000e-72 281.0
20 TraesCS5D01G293300 chr5B 81.416 113 9 3 728 840 355618002 355618102 1.020000e-11 82.4
21 TraesCS5D01G293300 chr3D 92.749 593 33 3 988 1574 564806666 564807254 0.000000e+00 848.0
22 TraesCS5D01G293300 chr3D 88.447 528 49 7 1539 2063 564807258 564807776 1.050000e-175 627.0
23 TraesCS5D01G293300 chr3D 86.897 145 18 1 3328 3471 564809409 564809553 1.280000e-35 161.0
24 TraesCS5D01G293300 chr3D 83.333 102 10 3 736 837 14245425 14245331 2.200000e-13 87.9
25 TraesCS5D01G293300 chr3B 91.688 397 30 1 915 1308 752293248 752292852 8.390000e-152 547.0
26 TraesCS5D01G293300 chr3B 88.235 323 28 6 1540 1861 752301879 752302192 1.160000e-100 377.0
27 TraesCS5D01G293300 chr3B 81.978 455 68 12 2879 3327 752304863 752305309 1.510000e-99 374.0
28 TraesCS5D01G293300 chr3B 89.888 267 21 1 1314 1574 752301608 752301874 5.500000e-89 339.0
29 TraesCS5D01G293300 chr3B 89.899 198 17 2 1868 2063 752302360 752302556 7.370000e-63 252.0
30 TraesCS5D01G293300 chr3B 78.571 224 36 8 3380 3602 752314415 752314627 2.150000e-28 137.0
31 TraesCS5D01G293300 chr7D 95.238 63 2 1 770 832 638440804 638440743 1.020000e-16 99.0
32 TraesCS5D01G293300 chr7D 84.810 79 8 4 304 382 124032976 124033050 4.760000e-10 76.8
33 TraesCS5D01G293300 chr2A 93.939 66 3 1 772 837 717955038 717955102 1.020000e-16 99.0
34 TraesCS5D01G293300 chr2A 89.706 68 6 1 770 837 385003537 385003603 7.910000e-13 86.1
35 TraesCS5D01G293300 chr2A 78.462 130 12 10 723 849 696926081 696925965 2.210000e-08 71.3
36 TraesCS5D01G293300 chr4B 90.909 66 5 1 770 835 601187598 601187534 2.200000e-13 87.9
37 TraesCS5D01G293300 chr4B 81.373 102 7 6 735 836 598259306 598259217 6.150000e-09 73.1
38 TraesCS5D01G293300 chr1A 90.909 66 5 1 770 835 6672087 6672151 2.200000e-13 87.9
39 TraesCS5D01G293300 chr1A 90.909 66 5 1 770 835 584308289 584308353 2.200000e-13 87.9
40 TraesCS5D01G293300 chr1A 97.619 42 1 0 729 770 110282733 110282774 6.150000e-09 73.1
41 TraesCS5D01G293300 chr6B 81.651 109 8 5 728 836 679569163 679569259 3.680000e-11 80.5
42 TraesCS5D01G293300 chr6A 95.652 46 2 0 725 770 107274176 107274131 1.710000e-09 75.0
43 TraesCS5D01G293300 chr2B 80.172 116 7 11 722 834 774106544 774106646 6.150000e-09 73.1
44 TraesCS5D01G293300 chrUn 80.000 115 8 10 722 836 85135370 85135469 2.210000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G293300 chr5D 390503143 390507578 4435 False 8192.000000 8192 100.000000 1 4436 1 chr5D.!!$F3 4435
1 TraesCS5D01G293300 chr5D 390417847 390418830 983 False 756.000000 756 81.231000 997 1964 1 chr5D.!!$F2 967
2 TraesCS5D01G293300 chr5D 390371481 390372230 749 False 689.000000 689 83.787000 997 1743 1 chr5D.!!$F1 746
3 TraesCS5D01G293300 chr5A 493812457 493818084 5627 True 1443.000000 2246 88.599333 831 4436 3 chr5A.!!$R2 3605
4 TraesCS5D01G293300 chr5A 493779348 493780125 777 False 741.000000 741 84.635000 998 1742 1 chr5A.!!$F2 744
5 TraesCS5D01G293300 chr5A 493662177 493662935 758 False 632.000000 632 82.436000 997 1743 1 chr5A.!!$F1 746
6 TraesCS5D01G293300 chr5B 470621107 470623411 2304 False 850.000000 1125 85.010000 2689 4436 2 chr5B.!!$F5 1747
7 TraesCS5D01G293300 chr5B 470512102 470513086 984 False 750.000000 750 81.132000 997 1964 1 chr5B.!!$F3 967
8 TraesCS5D01G293300 chr5B 470436015 470436764 749 False 673.000000 673 83.420000 997 1743 1 chr5B.!!$F2 746
9 TraesCS5D01G293300 chr5B 470602104 470604845 2741 False 418.250000 505 88.984000 147 2051 4 chr5B.!!$F4 1904
10 TraesCS5D01G293300 chr5B 469124550 469125060 510 True 412.000000 412 81.481000 998 1502 1 chr5B.!!$R1 504
11 TraesCS5D01G293300 chr3D 564806666 564809553 2887 False 545.333333 848 89.364333 988 3471 3 chr3D.!!$F1 2483
12 TraesCS5D01G293300 chr3B 752301608 752305309 3701 False 335.500000 377 87.500000 1314 3327 4 chr3B.!!$F2 2013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 318 0.040204 AACCCAAATAGCAGCAGCCT 59.960 50.0 0.00 0.00 43.56 4.58 F
682 1792 0.107017 GCATGTGCTGGGGTGTCTAT 60.107 55.0 0.00 0.00 38.21 1.98 F
684 1794 0.107017 ATGTGCTGGGGTGTCTATGC 60.107 55.0 0.00 0.00 0.00 3.14 F
692 1802 0.314302 GGGTGTCTATGCGCGTATCT 59.686 55.0 14.48 0.00 0.00 1.98 F
1916 3344 1.247567 TCATAGATGGCTCGATCGCA 58.752 50.0 11.09 2.94 0.00 5.10 F
2615 4190 0.951558 CTGCAAACTTAGCGGTGGTT 59.048 50.0 0.00 0.00 33.72 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 3128 2.154462 GGTGCCACCTACATATGCATC 58.846 52.381 6.63 0.00 34.73 3.91 R
2341 3883 0.034089 CCCCCTCCACTCCAATGAAC 60.034 60.000 0.00 0.00 0.00 3.18 R
2483 4048 0.326927 ACAAACCCATAGACCGGTGG 59.673 55.000 14.63 9.58 35.22 4.61 R
2547 4112 0.783850 AACCCACCTAACCAGCCAAT 59.216 50.000 0.00 0.00 0.00 3.16 R
2966 6454 0.605319 TGCCACGATGAACCTCAACC 60.605 55.000 0.00 0.00 0.00 3.77 R
4105 10225 0.027586 GTTTCATCCACGCATACGGC 59.972 55.000 0.00 0.00 46.04 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.663043 AACTAGCTAAGCACCTCTTATTAGT 57.337 36.000 0.00 0.00 38.18 2.24
28 29 7.663043 ACTAGCTAAGCACCTCTTATTAGTT 57.337 36.000 0.00 0.00 35.87 2.24
29 30 8.763984 ACTAGCTAAGCACCTCTTATTAGTTA 57.236 34.615 0.00 0.00 35.87 2.24
30 31 9.198475 ACTAGCTAAGCACCTCTTATTAGTTAA 57.802 33.333 0.00 0.00 35.87 2.01
32 33 8.719560 AGCTAAGCACCTCTTATTAGTTAAAC 57.280 34.615 0.00 0.00 36.72 2.01
33 34 8.319146 AGCTAAGCACCTCTTATTAGTTAAACA 58.681 33.333 0.00 0.00 36.72 2.83
34 35 8.388853 GCTAAGCACCTCTTATTAGTTAAACAC 58.611 37.037 0.00 0.00 36.72 3.32
35 36 9.431887 CTAAGCACCTCTTATTAGTTAAACACA 57.568 33.333 0.00 0.00 36.72 3.72
36 37 8.863872 AAGCACCTCTTATTAGTTAAACACAT 57.136 30.769 0.00 0.00 32.10 3.21
37 38 8.494016 AGCACCTCTTATTAGTTAAACACATC 57.506 34.615 0.00 0.00 0.00 3.06
38 39 8.100791 AGCACCTCTTATTAGTTAAACACATCA 58.899 33.333 0.00 0.00 0.00 3.07
39 40 8.175716 GCACCTCTTATTAGTTAAACACATCAC 58.824 37.037 0.00 0.00 0.00 3.06
40 41 9.214957 CACCTCTTATTAGTTAAACACATCACA 57.785 33.333 0.00 0.00 0.00 3.58
41 42 9.959721 ACCTCTTATTAGTTAAACACATCACAT 57.040 29.630 0.00 0.00 0.00 3.21
82 83 9.517609 CTAGTTAAACACCTACTAGTTAGCATG 57.482 37.037 0.00 0.00 37.59 4.06
83 84 7.904205 AGTTAAACACCTACTAGTTAGCATGT 58.096 34.615 0.00 0.00 30.52 3.21
84 85 8.373220 AGTTAAACACCTACTAGTTAGCATGTT 58.627 33.333 0.00 2.98 37.27 2.71
85 86 8.996271 GTTAAACACCTACTAGTTAGCATGTTT 58.004 33.333 18.84 18.84 42.51 2.83
86 87 9.563748 TTAAACACCTACTAGTTAGCATGTTTT 57.436 29.630 19.52 7.28 39.87 2.43
87 88 7.435068 AACACCTACTAGTTAGCATGTTTTG 57.565 36.000 0.00 0.00 34.34 2.44
88 89 6.531021 ACACCTACTAGTTAGCATGTTTTGT 58.469 36.000 0.00 0.00 0.00 2.83
89 90 6.996282 ACACCTACTAGTTAGCATGTTTTGTT 59.004 34.615 0.00 0.00 0.00 2.83
90 91 7.041372 ACACCTACTAGTTAGCATGTTTTGTTG 60.041 37.037 0.00 0.00 0.00 3.33
91 92 6.430000 ACCTACTAGTTAGCATGTTTTGTTGG 59.570 38.462 0.00 0.00 0.00 3.77
92 93 5.121221 ACTAGTTAGCATGTTTTGTTGGC 57.879 39.130 0.00 0.00 0.00 4.52
93 94 4.827284 ACTAGTTAGCATGTTTTGTTGGCT 59.173 37.500 0.00 0.00 38.55 4.75
94 95 4.670896 AGTTAGCATGTTTTGTTGGCTT 57.329 36.364 0.00 0.00 36.10 4.35
95 96 4.620982 AGTTAGCATGTTTTGTTGGCTTC 58.379 39.130 0.00 0.00 36.10 3.86
96 97 2.531522 AGCATGTTTTGTTGGCTTCC 57.468 45.000 0.00 0.00 0.00 3.46
97 98 1.139163 GCATGTTTTGTTGGCTTCCG 58.861 50.000 0.00 0.00 0.00 4.30
98 99 1.139163 CATGTTTTGTTGGCTTCCGC 58.861 50.000 0.00 0.00 0.00 5.54
109 110 1.502190 GCTTCCGCCAAACACTAGC 59.498 57.895 0.00 0.00 0.00 3.42
110 111 1.234615 GCTTCCGCCAAACACTAGCA 61.235 55.000 0.00 0.00 0.00 3.49
111 112 1.234821 CTTCCGCCAAACACTAGCAA 58.765 50.000 0.00 0.00 0.00 3.91
112 113 1.812571 CTTCCGCCAAACACTAGCAAT 59.187 47.619 0.00 0.00 0.00 3.56
113 114 1.164411 TCCGCCAAACACTAGCAATG 58.836 50.000 0.00 0.00 0.00 2.82
114 115 0.881118 CCGCCAAACACTAGCAATGT 59.119 50.000 0.00 0.00 0.00 2.71
115 116 1.269448 CCGCCAAACACTAGCAATGTT 59.731 47.619 0.00 0.00 42.07 2.71
117 118 3.057876 CCGCCAAACACTAGCAATGTTTA 60.058 43.478 9.01 0.00 46.08 2.01
118 119 4.158384 CGCCAAACACTAGCAATGTTTAG 58.842 43.478 9.01 4.64 46.08 1.85
119 120 3.920412 GCCAAACACTAGCAATGTTTAGC 59.080 43.478 10.47 10.47 46.08 3.09
120 121 4.558496 GCCAAACACTAGCAATGTTTAGCA 60.558 41.667 17.09 0.00 46.94 3.49
121 122 4.917415 CCAAACACTAGCAATGTTTAGCAC 59.083 41.667 9.01 0.00 46.08 4.40
122 123 4.766404 AACACTAGCAATGTTTAGCACC 57.234 40.909 0.00 0.00 36.93 5.01
123 124 4.021102 ACACTAGCAATGTTTAGCACCT 57.979 40.909 0.00 0.00 0.00 4.00
124 125 5.160607 ACACTAGCAATGTTTAGCACCTA 57.839 39.130 0.00 0.00 0.00 3.08
125 126 5.745227 ACACTAGCAATGTTTAGCACCTAT 58.255 37.500 0.00 0.00 0.00 2.57
126 127 6.884832 ACACTAGCAATGTTTAGCACCTATA 58.115 36.000 0.00 0.00 0.00 1.31
127 128 6.761714 ACACTAGCAATGTTTAGCACCTATAC 59.238 38.462 0.00 0.00 0.00 1.47
128 129 5.983720 ACTAGCAATGTTTAGCACCTATACG 59.016 40.000 0.00 0.00 0.00 3.06
129 130 5.018539 AGCAATGTTTAGCACCTATACGA 57.981 39.130 0.00 0.00 0.00 3.43
130 131 5.424757 AGCAATGTTTAGCACCTATACGAA 58.575 37.500 0.00 0.00 0.00 3.85
131 132 6.055588 AGCAATGTTTAGCACCTATACGAAT 58.944 36.000 0.00 0.00 0.00 3.34
132 133 6.542370 AGCAATGTTTAGCACCTATACGAATT 59.458 34.615 0.00 0.00 0.00 2.17
133 134 7.067008 AGCAATGTTTAGCACCTATACGAATTT 59.933 33.333 0.00 0.00 0.00 1.82
134 135 7.376072 GCAATGTTTAGCACCTATACGAATTTC 59.624 37.037 0.00 0.00 0.00 2.17
135 136 8.394877 CAATGTTTAGCACCTATACGAATTTCA 58.605 33.333 0.00 0.00 0.00 2.69
136 137 7.298507 TGTTTAGCACCTATACGAATTTCAC 57.701 36.000 0.00 0.00 0.00 3.18
137 138 7.101054 TGTTTAGCACCTATACGAATTTCACT 58.899 34.615 0.00 0.00 0.00 3.41
138 139 8.252417 TGTTTAGCACCTATACGAATTTCACTA 58.748 33.333 0.00 0.00 0.00 2.74
139 140 8.753175 GTTTAGCACCTATACGAATTTCACTAG 58.247 37.037 0.00 0.00 0.00 2.57
140 141 5.290386 AGCACCTATACGAATTTCACTAGC 58.710 41.667 0.00 0.00 0.00 3.42
141 142 5.069251 AGCACCTATACGAATTTCACTAGCT 59.931 40.000 0.00 0.00 0.00 3.32
142 143 5.753921 GCACCTATACGAATTTCACTAGCTT 59.246 40.000 0.00 0.00 0.00 3.74
143 144 6.074249 GCACCTATACGAATTTCACTAGCTTC 60.074 42.308 0.00 0.00 0.00 3.86
144 145 6.142480 CACCTATACGAATTTCACTAGCTTCG 59.858 42.308 0.00 0.00 44.41 3.79
182 183 8.822652 AAATGAGATGAAACATTTGAACCTTC 57.177 30.769 0.00 0.00 42.54 3.46
184 185 6.973843 TGAGATGAAACATTTGAACCTTCTG 58.026 36.000 0.00 0.00 0.00 3.02
189 195 3.733443 ACATTTGAACCTTCTGCCAAC 57.267 42.857 0.00 0.00 0.00 3.77
197 203 0.449388 CCTTCTGCCAACGAAGCATC 59.551 55.000 0.00 0.00 40.04 3.91
208 214 5.464168 CCAACGAAGCATCTGAAGAAAAAT 58.536 37.500 0.00 0.00 0.00 1.82
211 217 7.594758 CCAACGAAGCATCTGAAGAAAAATAAA 59.405 33.333 0.00 0.00 0.00 1.40
237 243 3.767673 AGTGACTAAGTATCTTCCGCCAA 59.232 43.478 0.00 0.00 0.00 4.52
239 245 5.104900 AGTGACTAAGTATCTTCCGCCAAAT 60.105 40.000 0.00 0.00 0.00 2.32
240 246 5.585047 GTGACTAAGTATCTTCCGCCAAATT 59.415 40.000 0.00 0.00 0.00 1.82
241 247 6.093633 GTGACTAAGTATCTTCCGCCAAATTT 59.906 38.462 0.00 0.00 0.00 1.82
242 248 6.315393 TGACTAAGTATCTTCCGCCAAATTTC 59.685 38.462 0.00 0.00 0.00 2.17
243 249 6.177610 ACTAAGTATCTTCCGCCAAATTTCA 58.822 36.000 0.00 0.00 0.00 2.69
244 250 5.975693 AAGTATCTTCCGCCAAATTTCAA 57.024 34.783 0.00 0.00 0.00 2.69
245 251 6.530019 AAGTATCTTCCGCCAAATTTCAAT 57.470 33.333 0.00 0.00 0.00 2.57
246 252 7.639113 AAGTATCTTCCGCCAAATTTCAATA 57.361 32.000 0.00 0.00 0.00 1.90
247 253 7.823745 AGTATCTTCCGCCAAATTTCAATAT 57.176 32.000 0.00 0.00 0.00 1.28
248 254 7.651808 AGTATCTTCCGCCAAATTTCAATATG 58.348 34.615 0.00 0.00 0.00 1.78
249 255 4.681744 TCTTCCGCCAAATTTCAATATGC 58.318 39.130 0.00 0.00 0.00 3.14
250 256 4.402155 TCTTCCGCCAAATTTCAATATGCT 59.598 37.500 0.00 0.00 0.00 3.79
251 257 5.592282 TCTTCCGCCAAATTTCAATATGCTA 59.408 36.000 0.00 0.00 0.00 3.49
252 258 6.265196 TCTTCCGCCAAATTTCAATATGCTAT 59.735 34.615 0.00 0.00 0.00 2.97
253 259 6.012658 TCCGCCAAATTTCAATATGCTATC 57.987 37.500 0.00 0.00 0.00 2.08
254 260 5.048083 TCCGCCAAATTTCAATATGCTATCC 60.048 40.000 0.00 0.00 0.00 2.59
255 261 4.853196 CGCCAAATTTCAATATGCTATCCG 59.147 41.667 0.00 0.00 0.00 4.18
256 262 4.622740 GCCAAATTTCAATATGCTATCCGC 59.377 41.667 0.00 0.00 39.77 5.54
268 274 0.816825 CTATCCGCAGTGCCAAGCAT 60.817 55.000 10.11 0.00 41.91 3.79
275 281 1.677576 GCAGTGCCAAGCATGCTAATA 59.322 47.619 23.00 5.16 41.91 0.98
279 285 3.629398 AGTGCCAAGCATGCTAATACTTC 59.371 43.478 23.00 8.67 41.91 3.01
280 286 2.951642 TGCCAAGCATGCTAATACTTCC 59.048 45.455 23.00 4.51 31.71 3.46
290 296 3.198200 TGCTAATACTTCCGCTAAACCCA 59.802 43.478 0.00 0.00 0.00 4.51
301 307 2.223340 CGCTAAACCCAAATAGCAGCAG 60.223 50.000 0.00 0.00 43.71 4.24
304 318 0.040204 AACCCAAATAGCAGCAGCCT 59.960 50.000 0.00 0.00 43.56 4.58
314 328 4.496336 AGCAGCCTTCCGCCATCC 62.496 66.667 0.00 0.00 38.78 3.51
325 339 2.948386 CGCCATCCGGATAGAGAGA 58.052 57.895 18.63 0.00 0.00 3.10
332 346 1.425831 TCCGGATAGAGAGAAGAGGGG 59.574 57.143 0.00 0.00 0.00 4.79
336 350 3.181442 CGGATAGAGAGAAGAGGGGTACA 60.181 52.174 0.00 0.00 0.00 2.90
339 353 3.039252 AGAGAGAAGAGGGGTACATGG 57.961 52.381 0.00 0.00 0.00 3.66
342 356 2.044492 AGAGAAGAGGGGTACATGGTGA 59.956 50.000 0.00 0.00 0.00 4.02
357 371 1.962807 TGGTGACTTTTGATTGGGCAG 59.037 47.619 0.00 0.00 0.00 4.85
358 372 2.238521 GGTGACTTTTGATTGGGCAGA 58.761 47.619 0.00 0.00 0.00 4.26
361 375 1.200020 GACTTTTGATTGGGCAGACGG 59.800 52.381 0.00 0.00 0.00 4.79
372 386 1.215647 GCAGACGGATGTTCGGACT 59.784 57.895 0.00 0.00 0.00 3.85
373 387 0.802607 GCAGACGGATGTTCGGACTC 60.803 60.000 0.00 0.00 0.00 3.36
382 396 0.834612 TGTTCGGACTCCCACAAAGT 59.165 50.000 0.00 0.00 0.00 2.66
401 415 2.429250 AGTCCCTTTTGTTTGGTTTCGG 59.571 45.455 0.00 0.00 0.00 4.30
405 419 4.004314 CCCTTTTGTTTGGTTTCGGTTTT 58.996 39.130 0.00 0.00 0.00 2.43
406 420 4.456222 CCCTTTTGTTTGGTTTCGGTTTTT 59.544 37.500 0.00 0.00 0.00 1.94
423 437 4.905412 TTTTTGGAAAAACAAACGTCCG 57.095 36.364 0.00 0.00 39.82 4.79
426 440 1.401199 TGGAAAAACAAACGTCCGGAC 59.599 47.619 25.28 25.28 32.45 4.79
447 461 1.014044 CATCGGCGGAATGATACGGG 61.014 60.000 7.21 0.00 0.00 5.28
448 462 1.469335 ATCGGCGGAATGATACGGGT 61.469 55.000 7.21 0.00 0.00 5.28
449 463 1.227438 CGGCGGAATGATACGGGTT 60.227 57.895 0.00 0.00 0.00 4.11
450 464 0.812412 CGGCGGAATGATACGGGTTT 60.812 55.000 0.00 0.00 0.00 3.27
451 465 1.538634 CGGCGGAATGATACGGGTTTA 60.539 52.381 0.00 0.00 0.00 2.01
452 466 1.869132 GGCGGAATGATACGGGTTTAC 59.131 52.381 0.00 0.00 0.00 2.01
453 467 1.523934 GCGGAATGATACGGGTTTACG 59.476 52.381 0.00 0.00 40.31 3.18
455 469 3.189285 CGGAATGATACGGGTTTACGTT 58.811 45.455 0.00 0.00 46.25 3.99
456 470 3.000523 CGGAATGATACGGGTTTACGTTG 59.999 47.826 0.00 0.00 46.25 4.10
457 471 3.310501 GGAATGATACGGGTTTACGTTGG 59.689 47.826 0.00 0.00 46.25 3.77
458 472 3.891422 ATGATACGGGTTTACGTTGGA 57.109 42.857 0.00 0.00 46.25 3.53
459 473 3.891422 TGATACGGGTTTACGTTGGAT 57.109 42.857 0.00 0.00 46.25 3.41
461 475 2.383368 TACGGGTTTACGTTGGATGG 57.617 50.000 0.00 0.00 46.25 3.51
462 476 0.956902 ACGGGTTTACGTTGGATGGC 60.957 55.000 0.00 0.00 46.25 4.40
464 478 0.524414 GGGTTTACGTTGGATGGCAC 59.476 55.000 0.00 0.00 0.00 5.01
482 496 3.546815 GGCACATTTGTATCTAAGCAGCG 60.547 47.826 0.00 0.00 0.00 5.18
483 497 3.611517 CACATTTGTATCTAAGCAGCGC 58.388 45.455 0.00 0.00 0.00 5.92
488 502 1.751351 TGTATCTAAGCAGCGCAGTCT 59.249 47.619 11.47 0.00 0.00 3.24
507 522 4.467795 AGTCTAGATGCTTGCAGAGGTTTA 59.532 41.667 0.00 0.00 0.00 2.01
519 534 3.604582 CAGAGGTTTAAGGCCTTGAGAG 58.395 50.000 28.77 5.80 36.29 3.20
522 537 2.306219 AGGTTTAAGGCCTTGAGAGTCC 59.694 50.000 28.77 18.95 31.04 3.85
523 538 2.039879 GGTTTAAGGCCTTGAGAGTCCA 59.960 50.000 28.77 1.62 0.00 4.02
524 539 3.308473 GGTTTAAGGCCTTGAGAGTCCAT 60.308 47.826 28.77 0.00 0.00 3.41
545 565 5.419788 CCATTTTGAAGATGAGTGGATTCCA 59.580 40.000 0.00 0.00 0.00 3.53
560 580 9.305925 GAGTGGATTCCATTCATCAAATTAAAC 57.694 33.333 20.10 0.00 39.59 2.01
563 583 8.477256 TGGATTCCATTCATCAAATTAAACCTC 58.523 33.333 0.00 0.00 0.00 3.85
564 584 8.699130 GGATTCCATTCATCAAATTAAACCTCT 58.301 33.333 0.00 0.00 0.00 3.69
565 585 9.741647 GATTCCATTCATCAAATTAAACCTCTC 57.258 33.333 0.00 0.00 0.00 3.20
566 586 8.648698 TTCCATTCATCAAATTAAACCTCTCA 57.351 30.769 0.00 0.00 0.00 3.27
567 587 8.284945 TCCATTCATCAAATTAAACCTCTCAG 57.715 34.615 0.00 0.00 0.00 3.35
568 588 8.108999 TCCATTCATCAAATTAAACCTCTCAGA 58.891 33.333 0.00 0.00 0.00 3.27
569 589 8.404000 CCATTCATCAAATTAAACCTCTCAGAG 58.596 37.037 0.00 0.00 0.00 3.35
624 676 1.018148 ACGTCATAGAGAGAGCCACG 58.982 55.000 0.00 0.00 0.00 4.94
625 677 1.018148 CGTCATAGAGAGAGCCACGT 58.982 55.000 0.00 0.00 0.00 4.49
626 678 1.268285 CGTCATAGAGAGAGCCACGTG 60.268 57.143 9.08 9.08 0.00 4.49
627 679 1.066303 GTCATAGAGAGAGCCACGTGG 59.934 57.143 30.66 30.66 38.53 4.94
628 680 1.107114 CATAGAGAGAGCCACGTGGT 58.893 55.000 33.92 21.33 37.57 4.16
631 683 2.282251 AGAGAGCCACGTGGTCGA 60.282 61.111 33.92 0.00 46.24 4.20
632 684 2.126424 GAGAGCCACGTGGTCGAC 60.126 66.667 33.92 22.54 46.24 4.20
633 685 2.597805 AGAGCCACGTGGTCGACT 60.598 61.111 33.92 22.79 46.24 4.18
634 686 2.143594 GAGAGCCACGTGGTCGACTT 62.144 60.000 33.92 14.97 46.24 3.01
636 688 0.172803 GAGCCACGTGGTCGACTTAT 59.827 55.000 33.92 10.62 40.62 1.73
637 689 0.108804 AGCCACGTGGTCGACTTATG 60.109 55.000 33.92 12.51 40.62 1.90
640 692 2.888594 CCACGTGGTCGACTTATGAAT 58.111 47.619 26.95 0.00 40.62 2.57
641 693 3.259064 CCACGTGGTCGACTTATGAATT 58.741 45.455 26.95 0.00 40.62 2.17
642 694 4.426416 CCACGTGGTCGACTTATGAATTA 58.574 43.478 26.95 0.00 40.62 1.40
643 695 5.047847 CCACGTGGTCGACTTATGAATTAT 58.952 41.667 26.95 0.00 40.62 1.28
644 696 5.051039 CCACGTGGTCGACTTATGAATTATG 60.051 44.000 26.95 4.75 40.62 1.90
645 697 5.746721 CACGTGGTCGACTTATGAATTATGA 59.253 40.000 16.46 0.00 40.62 2.15
646 698 6.254804 CACGTGGTCGACTTATGAATTATGAA 59.745 38.462 16.46 0.00 40.62 2.57
648 700 7.042725 ACGTGGTCGACTTATGAATTATGAATG 60.043 37.037 16.46 0.00 40.62 2.67
649 701 7.042725 CGTGGTCGACTTATGAATTATGAATGT 60.043 37.037 16.46 0.00 39.71 2.71
650 702 8.612619 GTGGTCGACTTATGAATTATGAATGTT 58.387 33.333 16.46 0.00 0.00 2.71
673 1783 1.402968 GTAGGTTCATGCATGTGCTGG 59.597 52.381 25.43 0.00 42.66 4.85
681 1791 1.299648 GCATGTGCTGGGGTGTCTA 59.700 57.895 0.00 0.00 38.21 2.59
682 1792 0.107017 GCATGTGCTGGGGTGTCTAT 60.107 55.000 0.00 0.00 38.21 1.98
683 1793 1.671979 CATGTGCTGGGGTGTCTATG 58.328 55.000 0.00 0.00 0.00 2.23
684 1794 0.107017 ATGTGCTGGGGTGTCTATGC 60.107 55.000 0.00 0.00 0.00 3.14
685 1795 1.815421 GTGCTGGGGTGTCTATGCG 60.815 63.158 0.00 0.00 0.00 4.73
686 1796 2.897350 GCTGGGGTGTCTATGCGC 60.897 66.667 0.00 0.00 0.00 6.09
687 1797 2.586079 CTGGGGTGTCTATGCGCG 60.586 66.667 0.00 0.00 0.00 6.86
688 1798 3.371097 CTGGGGTGTCTATGCGCGT 62.371 63.158 8.43 7.55 0.00 6.01
689 1799 2.011741 CTGGGGTGTCTATGCGCGTA 62.012 60.000 8.43 9.38 0.00 4.42
690 1800 1.366366 GGGGTGTCTATGCGCGTAT 59.634 57.895 15.52 15.52 0.00 3.06
691 1801 0.666577 GGGGTGTCTATGCGCGTATC 60.667 60.000 14.48 7.34 0.00 2.24
692 1802 0.314302 GGGTGTCTATGCGCGTATCT 59.686 55.000 14.48 0.00 0.00 1.98
693 1803 1.269621 GGGTGTCTATGCGCGTATCTT 60.270 52.381 14.48 0.00 0.00 2.40
694 1804 2.030540 GGGTGTCTATGCGCGTATCTTA 60.031 50.000 14.48 0.00 0.00 2.10
695 1805 3.367087 GGGTGTCTATGCGCGTATCTTAT 60.367 47.826 14.48 0.00 0.00 1.73
696 1806 4.142534 GGGTGTCTATGCGCGTATCTTATA 60.143 45.833 14.48 0.00 0.00 0.98
697 1807 4.792189 GGTGTCTATGCGCGTATCTTATAC 59.208 45.833 14.48 8.59 0.00 1.47
698 1808 5.391736 GGTGTCTATGCGCGTATCTTATACT 60.392 44.000 14.48 0.00 0.00 2.12
699 1809 6.183360 GGTGTCTATGCGCGTATCTTATACTA 60.183 42.308 14.48 0.00 0.00 1.82
700 1810 6.682020 GTGTCTATGCGCGTATCTTATACTAC 59.318 42.308 14.48 2.56 0.00 2.73
701 1811 6.592994 TGTCTATGCGCGTATCTTATACTACT 59.407 38.462 14.48 0.00 0.00 2.57
702 1812 7.118825 TGTCTATGCGCGTATCTTATACTACTT 59.881 37.037 14.48 0.00 0.00 2.24
703 1813 7.635587 GTCTATGCGCGTATCTTATACTACTTC 59.364 40.741 14.48 0.00 0.00 3.01
704 1814 5.678132 TGCGCGTATCTTATACTACTTCA 57.322 39.130 8.43 0.00 0.00 3.02
705 1815 5.446709 TGCGCGTATCTTATACTACTTCAC 58.553 41.667 8.43 0.00 0.00 3.18
706 1816 4.850470 GCGCGTATCTTATACTACTTCACC 59.150 45.833 8.43 0.00 0.00 4.02
732 1842 5.063944 TCGATGACGAGGTAAGTAGTTGTAC 59.936 44.000 0.00 0.00 43.81 2.90
733 1843 5.163824 CGATGACGAGGTAAGTAGTTGTACA 60.164 44.000 0.00 0.00 42.66 2.90
734 1844 5.618056 TGACGAGGTAAGTAGTTGTACAG 57.382 43.478 0.00 0.00 0.00 2.74
735 1845 5.065914 TGACGAGGTAAGTAGTTGTACAGT 58.934 41.667 0.00 0.00 0.00 3.55
736 1846 6.230472 TGACGAGGTAAGTAGTTGTACAGTA 58.770 40.000 0.00 0.00 0.00 2.74
737 1847 6.147821 TGACGAGGTAAGTAGTTGTACAGTAC 59.852 42.308 3.49 3.49 0.00 2.73
738 1848 6.234177 ACGAGGTAAGTAGTTGTACAGTACT 58.766 40.000 12.07 12.15 42.69 2.73
739 1849 6.370166 ACGAGGTAAGTAGTTGTACAGTACTC 59.630 42.308 16.33 5.51 40.32 2.59
740 1850 6.183360 CGAGGTAAGTAGTTGTACAGTACTCC 60.183 46.154 16.33 14.38 40.32 3.85
741 1851 5.948758 AGGTAAGTAGTTGTACAGTACTCCC 59.051 44.000 16.33 17.20 40.32 4.30
742 1852 5.948758 GGTAAGTAGTTGTACAGTACTCCCT 59.051 44.000 16.33 7.28 40.32 4.20
743 1853 6.094742 GGTAAGTAGTTGTACAGTACTCCCTC 59.905 46.154 16.33 9.57 40.32 4.30
744 1854 4.598022 AGTAGTTGTACAGTACTCCCTCC 58.402 47.826 12.07 0.00 37.05 4.30
745 1855 2.444421 AGTTGTACAGTACTCCCTCCG 58.556 52.381 12.07 0.00 0.00 4.63
746 1856 2.165998 GTTGTACAGTACTCCCTCCGT 58.834 52.381 12.07 0.00 0.00 4.69
747 1857 3.009473 AGTTGTACAGTACTCCCTCCGTA 59.991 47.826 12.07 0.00 0.00 4.02
748 1858 3.719268 TGTACAGTACTCCCTCCGTAA 57.281 47.619 12.07 0.00 0.00 3.18
749 1859 4.032960 TGTACAGTACTCCCTCCGTAAA 57.967 45.455 12.07 0.00 0.00 2.01
750 1860 3.758554 TGTACAGTACTCCCTCCGTAAAC 59.241 47.826 12.07 0.00 0.00 2.01
751 1861 3.166560 ACAGTACTCCCTCCGTAAACT 57.833 47.619 0.00 0.00 0.00 2.66
752 1862 4.307032 ACAGTACTCCCTCCGTAAACTA 57.693 45.455 0.00 0.00 0.00 2.24
753 1863 4.666512 ACAGTACTCCCTCCGTAAACTAA 58.333 43.478 0.00 0.00 0.00 2.24
754 1864 5.267587 ACAGTACTCCCTCCGTAAACTAAT 58.732 41.667 0.00 0.00 0.00 1.73
755 1865 6.426587 ACAGTACTCCCTCCGTAAACTAATA 58.573 40.000 0.00 0.00 0.00 0.98
756 1866 7.065504 ACAGTACTCCCTCCGTAAACTAATAT 58.934 38.462 0.00 0.00 0.00 1.28
757 1867 8.220559 ACAGTACTCCCTCCGTAAACTAATATA 58.779 37.037 0.00 0.00 0.00 0.86
758 1868 9.071276 CAGTACTCCCTCCGTAAACTAATATAA 57.929 37.037 0.00 0.00 0.00 0.98
759 1869 9.646522 AGTACTCCCTCCGTAAACTAATATAAA 57.353 33.333 0.00 0.00 0.00 1.40
762 1872 7.930325 ACTCCCTCCGTAAACTAATATAAAAGC 59.070 37.037 0.00 0.00 0.00 3.51
763 1873 6.925165 TCCCTCCGTAAACTAATATAAAAGCG 59.075 38.462 0.00 0.00 0.00 4.68
764 1874 6.703165 CCCTCCGTAAACTAATATAAAAGCGT 59.297 38.462 0.00 0.00 0.00 5.07
765 1875 7.225341 CCCTCCGTAAACTAATATAAAAGCGTT 59.775 37.037 0.00 0.00 0.00 4.84
766 1876 8.606602 CCTCCGTAAACTAATATAAAAGCGTTT 58.393 33.333 2.53 2.53 0.00 3.60
774 1884 8.283340 ACTAATATAAAAGCGTTTAGAGAGCG 57.717 34.615 10.55 1.23 32.76 5.03
775 1885 7.919621 ACTAATATAAAAGCGTTTAGAGAGCGT 59.080 33.333 10.55 1.76 32.76 5.07
776 1886 7.535489 AATATAAAAGCGTTTAGAGAGCGTT 57.465 32.000 10.55 0.00 32.76 4.84
777 1887 5.857822 ATAAAAGCGTTTAGAGAGCGTTT 57.142 34.783 10.55 5.96 42.93 3.60
778 1888 6.956299 ATAAAAGCGTTTAGAGAGCGTTTA 57.044 33.333 10.55 9.37 44.20 2.01
779 1889 4.905412 AAAGCGTTTAGAGAGCGTTTAG 57.095 40.909 0.00 0.00 34.62 1.85
780 1890 3.844577 AGCGTTTAGAGAGCGTTTAGA 57.155 42.857 0.00 0.00 34.15 2.10
781 1891 4.170292 AGCGTTTAGAGAGCGTTTAGAA 57.830 40.909 0.00 0.00 34.15 2.10
782 1892 4.745649 AGCGTTTAGAGAGCGTTTAGAAT 58.254 39.130 0.00 0.00 34.15 2.40
783 1893 5.888105 AGCGTTTAGAGAGCGTTTAGAATA 58.112 37.500 0.00 0.00 34.15 1.75
784 1894 5.742926 AGCGTTTAGAGAGCGTTTAGAATAC 59.257 40.000 0.00 0.00 34.15 1.89
785 1895 5.742926 GCGTTTAGAGAGCGTTTAGAATACT 59.257 40.000 0.00 0.00 34.15 2.12
786 1896 6.909357 GCGTTTAGAGAGCGTTTAGAATACTA 59.091 38.462 0.00 0.00 34.15 1.82
787 1897 7.430502 GCGTTTAGAGAGCGTTTAGAATACTAA 59.569 37.037 0.00 0.00 34.18 2.24
788 1898 8.732227 CGTTTAGAGAGCGTTTAGAATACTAAC 58.268 37.037 0.00 0.00 38.18 2.34
789 1899 9.565213 GTTTAGAGAGCGTTTAGAATACTAACA 57.435 33.333 0.00 0.00 38.18 2.41
793 1903 9.122779 AGAGAGCGTTTAGAATACTAACATAGT 57.877 33.333 0.00 0.00 42.68 2.12
794 1904 9.171701 GAGAGCGTTTAGAATACTAACATAGTG 57.828 37.037 0.37 0.00 39.81 2.74
795 1905 8.900781 AGAGCGTTTAGAATACTAACATAGTGA 58.099 33.333 0.37 0.00 39.81 3.41
796 1906 9.171701 GAGCGTTTAGAATACTAACATAGTGAG 57.828 37.037 0.37 0.00 39.81 3.51
797 1907 7.648510 AGCGTTTAGAATACTAACATAGTGAGC 59.351 37.037 0.37 0.00 39.81 4.26
798 1908 7.648510 GCGTTTAGAATACTAACATAGTGAGCT 59.351 37.037 0.00 0.00 39.81 4.09
900 2014 4.948847 CATTCATGGATCACGAGTTCCTA 58.051 43.478 10.70 0.00 35.14 2.94
901 2015 5.359756 CATTCATGGATCACGAGTTCCTAA 58.640 41.667 10.70 4.26 35.14 2.69
942 2056 3.356290 GAAAGAAAATGGCAGCTCCCTA 58.644 45.455 0.00 0.00 0.00 3.53
955 2069 1.546961 CTCCCTACGTCTGTCCAGTT 58.453 55.000 0.00 0.00 0.00 3.16
1356 2529 1.880340 CATCACCGGCTTCTCGCTC 60.880 63.158 0.00 0.00 39.13 5.03
1456 2629 3.309506 AGCTCTCGGTGCTGCAGT 61.310 61.111 16.64 0.00 39.56 4.40
1809 3072 6.428083 TTCTCTTGGTAGTACAATGGTTGA 57.572 37.500 2.06 0.00 0.00 3.18
1854 3121 7.495606 TCCAATTAGTAATCTAGTGCATGTGTG 59.504 37.037 0.00 0.00 0.00 3.82
1916 3344 1.247567 TCATAGATGGCTCGATCGCA 58.752 50.000 11.09 2.94 0.00 5.10
1983 3415 6.638168 GTACGTAACCACCTAACAAATCTC 57.362 41.667 0.00 0.00 0.00 2.75
1994 3426 5.354234 ACCTAACAAATCTCGGTGCAATTAG 59.646 40.000 0.00 0.00 0.00 1.73
2002 3434 6.835819 ATCTCGGTGCAATTAGTAGCTATA 57.164 37.500 0.00 0.00 0.00 1.31
2084 3518 2.958355 CAAACTCCATGGTCAACCTTGT 59.042 45.455 12.58 0.00 38.95 3.16
2085 3519 4.141287 CAAACTCCATGGTCAACCTTGTA 58.859 43.478 12.58 0.00 38.95 2.41
2086 3520 3.418684 ACTCCATGGTCAACCTTGTAC 57.581 47.619 12.58 0.00 38.95 2.90
2087 3521 2.289444 ACTCCATGGTCAACCTTGTACG 60.289 50.000 12.58 4.85 38.95 3.67
2159 3689 6.654959 TCCGTCCAATAAAATGAATAGGACA 58.345 36.000 0.00 0.00 43.12 4.02
2161 3691 6.418956 CGTCCAATAAAATGAATAGGACACG 58.581 40.000 0.00 0.00 43.12 4.49
2187 3717 7.928402 CACGTATTGCAAAATCTTACTTTGAC 58.072 34.615 1.71 0.00 36.12 3.18
2188 3718 7.060633 CACGTATTGCAAAATCTTACTTTGACC 59.939 37.037 1.71 0.00 36.12 4.02
2189 3719 7.081349 CGTATTGCAAAATCTTACTTTGACCA 58.919 34.615 1.71 0.00 36.12 4.02
2262 3801 9.577110 TCGAGTACGAATTCAACAGTATATTTT 57.423 29.630 6.22 0.00 45.74 1.82
2306 3845 7.282585 TCCCCTACATTTGATTGATCTAGTTG 58.717 38.462 0.00 0.00 0.00 3.16
2341 3883 3.742433 TTAAAATGTGTGTGGGCCTTG 57.258 42.857 4.53 0.00 0.00 3.61
2381 3923 3.555956 GGCACCACATTTATAGTCAGTCG 59.444 47.826 0.00 0.00 0.00 4.18
2382 3924 4.430007 GCACCACATTTATAGTCAGTCGA 58.570 43.478 0.00 0.00 0.00 4.20
2384 3926 5.175856 GCACCACATTTATAGTCAGTCGATC 59.824 44.000 0.00 0.00 0.00 3.69
2385 3927 6.273071 CACCACATTTATAGTCAGTCGATCA 58.727 40.000 0.00 0.00 0.00 2.92
2386 3928 6.756542 CACCACATTTATAGTCAGTCGATCAA 59.243 38.462 0.00 0.00 0.00 2.57
2388 3930 7.987458 ACCACATTTATAGTCAGTCGATCAATT 59.013 33.333 0.00 0.00 0.00 2.32
2389 3931 8.830580 CCACATTTATAGTCAGTCGATCAATTT 58.169 33.333 0.00 0.00 0.00 1.82
2390 3932 9.642312 CACATTTATAGTCAGTCGATCAATTTG 57.358 33.333 0.00 0.00 0.00 2.32
2391 3933 9.383519 ACATTTATAGTCAGTCGATCAATTTGT 57.616 29.630 0.00 0.00 0.00 2.83
2428 3993 4.162320 TGGCAACATTTTGAGTTTGGGTTA 59.838 37.500 0.00 0.00 46.17 2.85
2441 4006 8.287439 TGAGTTTGGGTTATATTATGGTGTTG 57.713 34.615 0.00 0.00 0.00 3.33
2461 4026 5.297278 TGTTGATTACACTAAACCACCACAC 59.703 40.000 0.00 0.00 0.00 3.82
2483 4048 3.403038 TGAGAGCTAGGTTTGCAGAAAC 58.597 45.455 0.00 0.00 40.79 2.78
2490 4055 2.112029 GTTTGCAGAAACCACCGGT 58.888 52.632 0.00 0.00 36.24 5.28
2527 4092 6.551601 TGACAAAAACACTAATTGGTGGGTAT 59.448 34.615 23.78 6.79 41.09 2.73
2547 4112 6.374333 GGGTATTCTCTTTGCATAAACACTGA 59.626 38.462 0.00 0.00 0.00 3.41
2553 4118 4.523943 TCTTTGCATAAACACTGATTGGCT 59.476 37.500 0.00 0.00 0.00 4.75
2554 4119 3.853831 TGCATAAACACTGATTGGCTG 57.146 42.857 0.00 0.00 0.00 4.85
2558 4123 4.157656 GCATAAACACTGATTGGCTGGTTA 59.842 41.667 0.00 0.00 0.00 2.85
2572 4138 2.223947 GCTGGTTAGGTGGGTTTTTGTG 60.224 50.000 0.00 0.00 0.00 3.33
2608 4183 3.989817 CCAATGGTTTCTGCAAACTTAGC 59.010 43.478 1.52 0.00 41.61 3.09
2615 4190 0.951558 CTGCAAACTTAGCGGTGGTT 59.048 50.000 0.00 0.00 33.72 3.67
2621 4196 2.047002 ACTTAGCGGTGGTTTTGTGT 57.953 45.000 0.00 0.00 0.00 3.72
2622 4197 2.371306 ACTTAGCGGTGGTTTTGTGTT 58.629 42.857 0.00 0.00 0.00 3.32
2630 4205 5.068067 AGCGGTGGTTTTGTGTTATTAACTT 59.932 36.000 7.99 0.00 0.00 2.66
2633 4208 7.271868 GCGGTGGTTTTGTGTTATTAACTTATC 59.728 37.037 7.99 0.00 0.00 1.75
2659 5932 7.972832 ATTATGTTCACAAGAGGAAACGTAA 57.027 32.000 0.00 0.00 0.00 3.18
2661 5934 3.558418 TGTTCACAAGAGGAAACGTAAGC 59.442 43.478 0.00 0.00 45.62 3.09
2675 5948 2.739292 CGTAAGCTATACGTGGCATGT 58.261 47.619 17.65 17.65 36.31 3.21
2734 6023 7.772332 AACAAGTGTTACTAGTTTCTCAGTG 57.228 36.000 0.00 2.02 36.32 3.66
2759 6050 8.726068 TGTGGTACATGTATGATTAACACAAAG 58.274 33.333 11.54 0.00 44.52 2.77
2761 6052 9.508642 TGGTACATGTATGATTAACACAAAGAA 57.491 29.630 9.18 0.00 0.00 2.52
2860 6151 3.418684 GGGACACCTAACAATGTGAGT 57.581 47.619 0.00 0.00 36.35 3.41
2907 6395 4.333913 TTGTTGCATTGTAGGCATGTTT 57.666 36.364 0.00 0.00 41.58 2.83
2966 6454 0.817634 TTGACCGTGTTGAGCTTGGG 60.818 55.000 0.00 0.00 0.00 4.12
3052 6540 3.119245 TGACCTTCTGCGTGTTACTATCC 60.119 47.826 0.00 0.00 0.00 2.59
3068 6556 4.770795 ACTATCCTACAGGTGATTTGTGC 58.229 43.478 0.00 0.00 36.34 4.57
3082 6572 6.914215 GGTGATTTGTGCATCATATGTTACAG 59.086 38.462 1.90 0.00 35.60 2.74
3091 6581 8.077991 GTGCATCATATGTTACAGCAATGTTAT 58.922 33.333 1.90 0.00 31.78 1.89
3168 6669 0.956633 CTGCACTGCCACAATCAGTT 59.043 50.000 0.00 0.00 42.38 3.16
3241 6742 4.852609 ACCGCGTAAGTAATTGTTGATC 57.147 40.909 4.92 0.00 41.68 2.92
3364 7167 3.524541 GAGCCATGTTTATTTTGCAGGG 58.475 45.455 0.00 0.00 37.16 4.45
3475 8971 7.064609 TCTCTACTAATTTTCGGTGCTTCATTG 59.935 37.037 0.00 0.00 0.00 2.82
3479 8975 2.679355 TTTCGGTGCTTCATTGTTCG 57.321 45.000 0.00 0.00 0.00 3.95
3484 8980 1.804151 GGTGCTTCATTGTTCGCTGTA 59.196 47.619 0.00 0.00 0.00 2.74
3491 8987 1.976045 CATTGTTCGCTGTAAAACCGC 59.024 47.619 0.00 0.00 0.00 5.68
3557 9053 1.265365 GAGTTCACTCCAAGTTGCAGC 59.735 52.381 0.00 0.00 37.02 5.25
3565 9061 0.384725 CCAAGTTGCAGCGAAGTTCG 60.385 55.000 20.87 20.87 43.89 3.95
3593 9089 8.110860 TCTTTATCAGGTTCTCCAAAAATGAC 57.889 34.615 0.00 0.00 35.89 3.06
3620 9261 6.373186 AGTTCTTTTAGAAAACCGGACTTG 57.627 37.500 9.46 0.00 35.75 3.16
3640 9281 9.374838 GGACTTGTCGTTTATATCTCCTTTTTA 57.625 33.333 0.00 0.00 0.00 1.52
3704 9799 4.485163 ACCGGTATAACAAACTCGTGTAC 58.515 43.478 4.49 0.00 0.00 2.90
3723 9831 6.982724 CGTGTACTAGGTTCCCCTATAAAAAG 59.017 42.308 0.00 0.00 42.54 2.27
3733 9841 5.727434 TCCCCTATAAAAAGAACTCGTGTC 58.273 41.667 0.00 0.00 0.00 3.67
3801 9914 7.497925 ACTCAGGAGTCAACTGAATTAAAAC 57.502 36.000 0.00 0.00 43.74 2.43
3867 9980 2.126888 CGTTGGCATCGTGTTGGC 60.127 61.111 9.71 0.00 42.20 4.52
3884 9997 1.203038 TGGCAGAGCAAAAGATGGGAA 60.203 47.619 0.00 0.00 0.00 3.97
3933 10046 2.359107 CGTGGTGCTGCTGATGGT 60.359 61.111 0.00 0.00 0.00 3.55
4030 10146 2.202797 CAGGTCGCCATGGACTCG 60.203 66.667 18.40 10.19 37.12 4.18
4099 10219 4.523173 AGTACACGATCCACCCATGTATAG 59.477 45.833 0.00 0.00 0.00 1.31
4100 10220 2.632996 ACACGATCCACCCATGTATAGG 59.367 50.000 0.00 0.00 0.00 2.57
4102 10222 3.830178 CACGATCCACCCATGTATAGGTA 59.170 47.826 0.00 0.00 33.52 3.08
4103 10223 4.282449 CACGATCCACCCATGTATAGGTAA 59.718 45.833 0.00 0.00 33.52 2.85
4104 10224 5.046591 CACGATCCACCCATGTATAGGTAAT 60.047 44.000 0.00 0.00 33.52 1.89
4105 10225 5.046591 ACGATCCACCCATGTATAGGTAATG 60.047 44.000 0.00 0.00 33.52 1.90
4106 10226 4.634012 TCCACCCATGTATAGGTAATGC 57.366 45.455 0.00 0.00 33.52 3.56
4107 10227 3.329520 TCCACCCATGTATAGGTAATGCC 59.670 47.826 0.00 0.00 33.52 4.40
4123 10243 0.391793 TGCCGTATGCGTGGATGAAA 60.392 50.000 1.69 0.00 45.60 2.69
4137 10257 2.239201 GATGAAACCGCGCTGTTTAAC 58.761 47.619 26.58 16.98 38.51 2.01
4147 10267 1.366679 GCTGTTTAACCCGGCTACTC 58.633 55.000 0.00 0.00 0.00 2.59
4188 10316 2.264794 GATTCGGCGTGGGTGACT 59.735 61.111 6.85 0.00 0.00 3.41
4260 10388 1.523032 CCCCGCCGATTTCAGGTAC 60.523 63.158 0.00 0.00 0.00 3.34
4262 10390 1.153706 CCGCCGATTTCAGGTACGT 60.154 57.895 0.00 0.00 0.00 3.57
4264 10392 1.469595 CCGCCGATTTCAGGTACGTAA 60.470 52.381 0.00 0.00 0.00 3.18
4278 10406 3.562869 CGTAAGCTACGCAAACAGC 57.437 52.632 0.00 0.00 45.81 4.40
4279 10407 0.787787 CGTAAGCTACGCAAACAGCA 59.212 50.000 0.00 0.00 45.81 4.41
4281 10409 1.798813 GTAAGCTACGCAAACAGCACT 59.201 47.619 0.00 0.00 46.13 4.40
4282 10410 0.588252 AAGCTACGCAAACAGCACTG 59.412 50.000 0.00 0.00 46.13 3.66
4284 10412 1.845809 GCTACGCAAACAGCACTGCT 61.846 55.000 0.00 0.00 46.13 4.24
4293 10421 4.193893 AGCACTGCTGCACCACCA 62.194 61.111 1.67 0.00 46.97 4.17
4294 10422 3.667282 GCACTGCTGCACCACCAG 61.667 66.667 0.00 0.00 43.62 4.00
4301 10429 3.019964 CTGCACCACCAGCTTAACA 57.980 52.632 0.00 0.00 0.00 2.41
4302 10430 1.538047 CTGCACCACCAGCTTAACAT 58.462 50.000 0.00 0.00 0.00 2.71
4303 10431 1.200716 CTGCACCACCAGCTTAACATG 59.799 52.381 0.00 0.00 0.00 3.21
4304 10432 1.247567 GCACCACCAGCTTAACATGT 58.752 50.000 0.00 0.00 0.00 3.21
4305 10433 1.200020 GCACCACCAGCTTAACATGTC 59.800 52.381 0.00 0.00 0.00 3.06
4307 10435 2.485426 CACCACCAGCTTAACATGTCAG 59.515 50.000 0.00 0.00 0.00 3.51
4308 10436 2.371841 ACCACCAGCTTAACATGTCAGA 59.628 45.455 0.00 0.00 0.00 3.27
4309 10437 3.009473 ACCACCAGCTTAACATGTCAGAT 59.991 43.478 0.00 0.00 0.00 2.90
4311 10439 5.185454 CCACCAGCTTAACATGTCAGATTA 58.815 41.667 0.00 0.00 0.00 1.75
4313 10441 6.183360 CCACCAGCTTAACATGTCAGATTAAG 60.183 42.308 0.00 4.33 38.43 1.85
4314 10442 6.595326 CACCAGCTTAACATGTCAGATTAAGA 59.405 38.462 15.34 0.00 37.89 2.10
4333 10465 3.525537 AGATCACAATCGCCACAGTTAG 58.474 45.455 0.00 0.00 36.97 2.34
4337 10469 3.991773 TCACAATCGCCACAGTTAGTTAC 59.008 43.478 0.00 0.00 0.00 2.50
4338 10470 3.994392 CACAATCGCCACAGTTAGTTACT 59.006 43.478 0.00 0.00 37.68 2.24
4339 10471 4.091509 CACAATCGCCACAGTTAGTTACTC 59.908 45.833 0.00 0.00 33.85 2.59
4344 10476 4.875536 TCGCCACAGTTAGTTACTCGTATA 59.124 41.667 0.00 0.00 33.85 1.47
4349 10491 7.167136 GCCACAGTTAGTTACTCGTATAATGAC 59.833 40.741 0.00 0.00 33.85 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.369672 ACTAATAAGAGGTGCTTAGCTAGTTAT 57.630 33.333 5.60 0.00 42.08 1.89
2 3 8.763984 ACTAATAAGAGGTGCTTAGCTAGTTA 57.236 34.615 5.60 0.00 42.08 2.24
3 4 7.663043 ACTAATAAGAGGTGCTTAGCTAGTT 57.337 36.000 5.60 0.00 42.08 2.24
4 5 7.663043 AACTAATAAGAGGTGCTTAGCTAGT 57.337 36.000 5.60 0.00 42.08 2.57
6 7 9.813446 GTTTAACTAATAAGAGGTGCTTAGCTA 57.187 33.333 5.60 0.00 42.08 3.32
7 8 8.319146 TGTTTAACTAATAAGAGGTGCTTAGCT 58.681 33.333 5.60 0.00 42.08 3.32
8 9 8.388853 GTGTTTAACTAATAAGAGGTGCTTAGC 58.611 37.037 0.00 0.00 42.08 3.09
9 10 9.431887 TGTGTTTAACTAATAAGAGGTGCTTAG 57.568 33.333 0.00 0.00 42.08 2.18
10 11 9.953565 ATGTGTTTAACTAATAAGAGGTGCTTA 57.046 29.630 0.00 0.00 42.92 3.09
11 12 8.863872 ATGTGTTTAACTAATAAGAGGTGCTT 57.136 30.769 0.00 0.00 40.68 3.91
12 13 8.100791 TGATGTGTTTAACTAATAAGAGGTGCT 58.899 33.333 0.00 0.00 0.00 4.40
13 14 8.175716 GTGATGTGTTTAACTAATAAGAGGTGC 58.824 37.037 0.00 0.00 0.00 5.01
14 15 9.214957 TGTGATGTGTTTAACTAATAAGAGGTG 57.785 33.333 0.00 0.00 0.00 4.00
15 16 9.959721 ATGTGATGTGTTTAACTAATAAGAGGT 57.040 29.630 0.00 0.00 0.00 3.85
56 57 9.517609 CATGCTAACTAGTAGGTGTTTAACTAG 57.482 37.037 0.00 7.09 45.33 2.57
57 58 9.028284 ACATGCTAACTAGTAGGTGTTTAACTA 57.972 33.333 0.00 0.00 32.00 2.24
58 59 7.904205 ACATGCTAACTAGTAGGTGTTTAACT 58.096 34.615 0.00 0.00 32.00 2.24
59 60 8.543862 AACATGCTAACTAGTAGGTGTTTAAC 57.456 34.615 0.00 0.00 33.44 2.01
60 61 9.563748 AAAACATGCTAACTAGTAGGTGTTTAA 57.436 29.630 17.48 0.00 37.50 1.52
61 62 8.995220 CAAAACATGCTAACTAGTAGGTGTTTA 58.005 33.333 17.48 0.00 37.50 2.01
62 63 7.501225 ACAAAACATGCTAACTAGTAGGTGTTT 59.499 33.333 14.06 14.06 39.42 2.83
63 64 6.996282 ACAAAACATGCTAACTAGTAGGTGTT 59.004 34.615 0.00 1.30 33.44 3.32
64 65 6.531021 ACAAAACATGCTAACTAGTAGGTGT 58.469 36.000 0.00 0.00 33.44 4.16
65 66 7.298122 CAACAAAACATGCTAACTAGTAGGTG 58.702 38.462 0.00 0.00 33.44 4.00
66 67 6.430000 CCAACAAAACATGCTAACTAGTAGGT 59.570 38.462 0.00 0.00 34.53 3.08
67 68 6.622896 GCCAACAAAACATGCTAACTAGTAGG 60.623 42.308 0.00 0.00 0.00 3.18
68 69 6.149474 AGCCAACAAAACATGCTAACTAGTAG 59.851 38.462 0.00 0.00 0.00 2.57
69 70 6.001460 AGCCAACAAAACATGCTAACTAGTA 58.999 36.000 0.00 0.00 0.00 1.82
70 71 4.827284 AGCCAACAAAACATGCTAACTAGT 59.173 37.500 0.00 0.00 0.00 2.57
71 72 5.376854 AGCCAACAAAACATGCTAACTAG 57.623 39.130 0.00 0.00 0.00 2.57
72 73 5.278758 GGAAGCCAACAAAACATGCTAACTA 60.279 40.000 0.00 0.00 0.00 2.24
73 74 4.501400 GGAAGCCAACAAAACATGCTAACT 60.501 41.667 0.00 0.00 0.00 2.24
74 75 3.740832 GGAAGCCAACAAAACATGCTAAC 59.259 43.478 0.00 0.00 0.00 2.34
75 76 3.551863 CGGAAGCCAACAAAACATGCTAA 60.552 43.478 0.00 0.00 0.00 3.09
76 77 2.030363 CGGAAGCCAACAAAACATGCTA 60.030 45.455 0.00 0.00 0.00 3.49
77 78 1.269726 CGGAAGCCAACAAAACATGCT 60.270 47.619 0.00 0.00 0.00 3.79
78 79 1.139163 CGGAAGCCAACAAAACATGC 58.861 50.000 0.00 0.00 0.00 4.06
92 93 1.234821 TTGCTAGTGTTTGGCGGAAG 58.765 50.000 0.00 0.00 0.00 3.46
93 94 1.539388 CATTGCTAGTGTTTGGCGGAA 59.461 47.619 0.00 0.00 0.00 4.30
94 95 1.164411 CATTGCTAGTGTTTGGCGGA 58.836 50.000 0.00 0.00 0.00 5.54
95 96 0.881118 ACATTGCTAGTGTTTGGCGG 59.119 50.000 0.00 0.00 0.00 6.13
96 97 2.704725 AACATTGCTAGTGTTTGGCG 57.295 45.000 0.00 0.00 36.44 5.69
98 99 4.917415 GTGCTAAACATTGCTAGTGTTTGG 59.083 41.667 16.26 14.74 46.14 3.28
99 100 4.917415 GGTGCTAAACATTGCTAGTGTTTG 59.083 41.667 16.26 9.67 46.14 2.93
101 102 4.398319 AGGTGCTAAACATTGCTAGTGTT 58.602 39.130 0.00 0.00 41.28 3.32
102 103 4.021102 AGGTGCTAAACATTGCTAGTGT 57.979 40.909 0.00 0.00 0.00 3.55
103 104 6.074302 CGTATAGGTGCTAAACATTGCTAGTG 60.074 42.308 0.00 0.00 0.00 2.74
104 105 5.983720 CGTATAGGTGCTAAACATTGCTAGT 59.016 40.000 0.00 0.00 0.00 2.57
105 106 6.213677 TCGTATAGGTGCTAAACATTGCTAG 58.786 40.000 0.00 0.00 0.00 3.42
106 107 6.151663 TCGTATAGGTGCTAAACATTGCTA 57.848 37.500 0.00 0.00 0.00 3.49
107 108 5.018539 TCGTATAGGTGCTAAACATTGCT 57.981 39.130 0.00 0.00 0.00 3.91
108 109 5.728351 TTCGTATAGGTGCTAAACATTGC 57.272 39.130 0.00 0.00 0.00 3.56
109 110 8.394877 TGAAATTCGTATAGGTGCTAAACATTG 58.605 33.333 0.00 0.00 0.00 2.82
110 111 8.395633 GTGAAATTCGTATAGGTGCTAAACATT 58.604 33.333 0.00 0.00 0.00 2.71
111 112 7.769044 AGTGAAATTCGTATAGGTGCTAAACAT 59.231 33.333 0.00 0.00 0.00 2.71
112 113 7.101054 AGTGAAATTCGTATAGGTGCTAAACA 58.899 34.615 0.00 0.00 0.00 2.83
113 114 7.535489 AGTGAAATTCGTATAGGTGCTAAAC 57.465 36.000 0.00 0.00 0.00 2.01
114 115 7.437267 GCTAGTGAAATTCGTATAGGTGCTAAA 59.563 37.037 0.00 0.00 0.00 1.85
115 116 6.921857 GCTAGTGAAATTCGTATAGGTGCTAA 59.078 38.462 0.00 0.00 0.00 3.09
116 117 6.264744 AGCTAGTGAAATTCGTATAGGTGCTA 59.735 38.462 0.00 0.00 0.00 3.49
117 118 5.069251 AGCTAGTGAAATTCGTATAGGTGCT 59.931 40.000 0.00 0.00 0.00 4.40
118 119 5.290386 AGCTAGTGAAATTCGTATAGGTGC 58.710 41.667 0.00 0.00 0.00 5.01
119 120 6.142480 CGAAGCTAGTGAAATTCGTATAGGTG 59.858 42.308 0.00 0.00 39.62 4.00
120 121 6.207213 CGAAGCTAGTGAAATTCGTATAGGT 58.793 40.000 0.00 0.00 39.62 3.08
121 122 6.677027 CGAAGCTAGTGAAATTCGTATAGG 57.323 41.667 0.00 0.00 39.62 2.57
128 129 7.235080 GGAAACTAACGAAGCTAGTGAAATTC 58.765 38.462 0.00 0.00 38.61 2.17
129 130 6.128634 CGGAAACTAACGAAGCTAGTGAAATT 60.129 38.462 0.00 0.00 38.61 1.82
130 131 5.347907 CGGAAACTAACGAAGCTAGTGAAAT 59.652 40.000 0.00 0.00 38.61 2.17
131 132 4.682860 CGGAAACTAACGAAGCTAGTGAAA 59.317 41.667 0.00 0.00 38.61 2.69
132 133 4.232221 CGGAAACTAACGAAGCTAGTGAA 58.768 43.478 0.00 0.00 38.61 3.18
133 134 3.829948 CGGAAACTAACGAAGCTAGTGA 58.170 45.455 0.00 0.00 38.61 3.41
134 135 2.344741 GCGGAAACTAACGAAGCTAGTG 59.655 50.000 0.00 0.00 38.61 2.74
135 136 2.603953 GCGGAAACTAACGAAGCTAGT 58.396 47.619 0.00 0.00 41.66 2.57
136 137 1.925185 GGCGGAAACTAACGAAGCTAG 59.075 52.381 0.00 0.00 31.58 3.42
137 138 1.273048 TGGCGGAAACTAACGAAGCTA 59.727 47.619 0.00 0.00 0.00 3.32
138 139 0.034337 TGGCGGAAACTAACGAAGCT 59.966 50.000 0.00 0.00 0.00 3.74
139 140 0.869730 TTGGCGGAAACTAACGAAGC 59.130 50.000 0.00 0.00 0.00 3.86
140 141 3.187637 TCATTTGGCGGAAACTAACGAAG 59.812 43.478 0.00 0.00 0.00 3.79
141 142 3.139850 TCATTTGGCGGAAACTAACGAA 58.860 40.909 0.00 0.00 0.00 3.85
142 143 2.739913 CTCATTTGGCGGAAACTAACGA 59.260 45.455 0.00 0.00 0.00 3.85
143 144 2.739913 TCTCATTTGGCGGAAACTAACG 59.260 45.455 0.00 0.00 0.00 3.18
144 145 4.394920 TCATCTCATTTGGCGGAAACTAAC 59.605 41.667 0.00 0.00 0.00 2.34
145 146 4.584874 TCATCTCATTTGGCGGAAACTAA 58.415 39.130 0.00 0.00 0.00 2.24
179 180 1.129998 CAGATGCTTCGTTGGCAGAAG 59.870 52.381 11.10 11.10 45.69 2.85
180 181 1.159285 CAGATGCTTCGTTGGCAGAA 58.841 50.000 0.00 0.00 43.15 3.02
181 182 0.321346 TCAGATGCTTCGTTGGCAGA 59.679 50.000 0.00 0.00 43.15 4.26
182 183 1.129998 CTTCAGATGCTTCGTTGGCAG 59.870 52.381 0.00 0.00 43.15 4.85
184 185 1.442769 TCTTCAGATGCTTCGTTGGC 58.557 50.000 0.00 0.00 0.00 4.52
189 195 8.506140 TTGTTTATTTTTCTTCAGATGCTTCG 57.494 30.769 0.00 0.00 0.00 3.79
208 214 7.330208 GCGGAAGATACTTAGTCACTTTGTTTA 59.670 37.037 0.00 0.00 0.00 2.01
211 217 5.169295 GCGGAAGATACTTAGTCACTTTGT 58.831 41.667 0.00 0.00 0.00 2.83
220 226 6.677781 TGAAATTTGGCGGAAGATACTTAG 57.322 37.500 0.00 0.00 0.00 2.18
225 231 6.265196 AGCATATTGAAATTTGGCGGAAGATA 59.735 34.615 0.00 0.00 0.00 1.98
227 233 4.402155 AGCATATTGAAATTTGGCGGAAGA 59.598 37.500 0.00 0.00 0.00 2.87
249 255 0.816825 ATGCTTGGCACTGCGGATAG 60.817 55.000 0.00 0.00 43.04 2.08
250 256 1.096967 CATGCTTGGCACTGCGGATA 61.097 55.000 0.00 0.00 43.04 2.59
251 257 2.044650 ATGCTTGGCACTGCGGAT 60.045 55.556 0.00 0.00 43.04 4.18
252 258 3.057548 CATGCTTGGCACTGCGGA 61.058 61.111 0.00 0.00 43.04 5.54
253 259 4.789075 GCATGCTTGGCACTGCGG 62.789 66.667 11.37 0.00 43.04 5.69
254 260 1.925415 TTAGCATGCTTGGCACTGCG 61.925 55.000 28.02 0.00 43.04 5.18
255 261 0.458669 ATTAGCATGCTTGGCACTGC 59.541 50.000 28.02 14.28 43.04 4.40
256 262 2.947652 AGTATTAGCATGCTTGGCACTG 59.052 45.455 28.02 0.00 43.04 3.66
257 263 3.287867 AGTATTAGCATGCTTGGCACT 57.712 42.857 28.02 19.67 43.04 4.40
258 264 3.243201 GGAAGTATTAGCATGCTTGGCAC 60.243 47.826 28.02 17.80 43.04 5.01
259 265 2.951642 GGAAGTATTAGCATGCTTGGCA 59.048 45.455 28.02 4.26 44.86 4.92
260 266 2.031682 CGGAAGTATTAGCATGCTTGGC 60.032 50.000 28.02 13.69 35.62 4.52
268 274 3.198200 TGGGTTTAGCGGAAGTATTAGCA 59.802 43.478 0.00 0.00 34.77 3.49
275 281 3.014623 GCTATTTGGGTTTAGCGGAAGT 58.985 45.455 0.00 0.00 32.27 3.01
279 285 1.065551 GCTGCTATTTGGGTTTAGCGG 59.934 52.381 6.43 6.43 46.18 5.52
280 286 1.742831 TGCTGCTATTTGGGTTTAGCG 59.257 47.619 0.00 0.00 42.99 4.26
290 296 1.379642 GCGGAAGGCTGCTGCTATTT 61.380 55.000 19.55 7.74 43.23 1.40
304 318 0.178973 TCTCTATCCGGATGGCGGAA 60.179 55.000 27.55 6.98 39.14 4.30
314 328 2.668144 ACCCCTCTTCTCTCTATCCG 57.332 55.000 0.00 0.00 0.00 4.18
316 330 4.770010 CCATGTACCCCTCTTCTCTCTATC 59.230 50.000 0.00 0.00 0.00 2.08
323 337 2.188817 GTCACCATGTACCCCTCTTCT 58.811 52.381 0.00 0.00 0.00 2.85
325 339 2.344093 AGTCACCATGTACCCCTCTT 57.656 50.000 0.00 0.00 0.00 2.85
332 346 4.618227 GCCCAATCAAAAGTCACCATGTAC 60.618 45.833 0.00 0.00 0.00 2.90
336 350 2.564062 CTGCCCAATCAAAAGTCACCAT 59.436 45.455 0.00 0.00 0.00 3.55
339 353 2.350772 CGTCTGCCCAATCAAAAGTCAC 60.351 50.000 0.00 0.00 0.00 3.67
342 356 1.202879 TCCGTCTGCCCAATCAAAAGT 60.203 47.619 0.00 0.00 0.00 2.66
357 371 1.141234 GGGAGTCCGAACATCCGTC 59.859 63.158 2.26 0.00 33.68 4.79
358 372 1.608336 TGGGAGTCCGAACATCCGT 60.608 57.895 2.26 0.00 33.68 4.69
361 375 2.076863 CTTTGTGGGAGTCCGAACATC 58.923 52.381 15.05 0.00 35.24 3.06
382 396 2.458620 ACCGAAACCAAACAAAAGGGA 58.541 42.857 0.00 0.00 0.00 4.20
385 399 5.179555 TCCAAAAACCGAAACCAAACAAAAG 59.820 36.000 0.00 0.00 0.00 2.27
405 419 2.089980 TCCGGACGTTTGTTTTTCCAA 58.910 42.857 0.00 0.00 0.00 3.53
406 420 1.401199 GTCCGGACGTTTGTTTTTCCA 59.599 47.619 20.85 0.00 0.00 3.53
429 443 1.292223 CCCGTATCATTCCGCCGAT 59.708 57.895 0.00 0.00 0.00 4.18
438 452 3.891422 TCCAACGTAAACCCGTATCAT 57.109 42.857 0.00 0.00 40.85 2.45
439 453 3.523547 CATCCAACGTAAACCCGTATCA 58.476 45.455 0.00 0.00 40.85 2.15
447 461 3.569250 AATGTGCCATCCAACGTAAAC 57.431 42.857 0.00 0.00 0.00 2.01
448 462 3.319405 ACAAATGTGCCATCCAACGTAAA 59.681 39.130 0.00 0.00 0.00 2.01
449 463 2.887783 ACAAATGTGCCATCCAACGTAA 59.112 40.909 0.00 0.00 0.00 3.18
450 464 2.509569 ACAAATGTGCCATCCAACGTA 58.490 42.857 0.00 0.00 0.00 3.57
451 465 1.327303 ACAAATGTGCCATCCAACGT 58.673 45.000 0.00 0.00 0.00 3.99
452 466 3.378112 AGATACAAATGTGCCATCCAACG 59.622 43.478 0.00 0.00 0.00 4.10
453 467 4.989279 AGATACAAATGTGCCATCCAAC 57.011 40.909 0.00 0.00 0.00 3.77
455 469 4.580167 GCTTAGATACAAATGTGCCATCCA 59.420 41.667 0.00 0.00 0.00 3.41
456 470 4.580167 TGCTTAGATACAAATGTGCCATCC 59.420 41.667 0.00 0.00 0.00 3.51
457 471 5.755813 CTGCTTAGATACAAATGTGCCATC 58.244 41.667 0.00 0.00 0.00 3.51
458 472 4.037208 GCTGCTTAGATACAAATGTGCCAT 59.963 41.667 0.00 0.00 0.00 4.40
459 473 3.378112 GCTGCTTAGATACAAATGTGCCA 59.622 43.478 0.00 0.00 0.00 4.92
461 475 3.611517 CGCTGCTTAGATACAAATGTGC 58.388 45.455 0.00 0.00 0.00 4.57
462 476 3.063861 TGCGCTGCTTAGATACAAATGTG 59.936 43.478 9.73 0.00 0.00 3.21
464 478 3.310774 ACTGCGCTGCTTAGATACAAATG 59.689 43.478 14.80 0.00 0.00 2.32
465 479 3.535561 ACTGCGCTGCTTAGATACAAAT 58.464 40.909 14.80 0.00 0.00 2.32
466 480 2.930040 GACTGCGCTGCTTAGATACAAA 59.070 45.455 14.80 0.00 0.00 2.83
470 484 3.477530 TCTAGACTGCGCTGCTTAGATA 58.522 45.455 14.80 0.00 0.00 1.98
473 487 2.392821 CATCTAGACTGCGCTGCTTAG 58.607 52.381 14.80 15.04 0.00 2.18
477 491 0.809241 AAGCATCTAGACTGCGCTGC 60.809 55.000 14.80 10.07 44.38 5.25
480 494 1.086067 TGCAAGCATCTAGACTGCGC 61.086 55.000 16.42 0.00 44.38 6.09
482 496 2.203401 CTCTGCAAGCATCTAGACTGC 58.797 52.381 15.30 15.30 39.97 4.40
483 497 2.168106 ACCTCTGCAAGCATCTAGACTG 59.832 50.000 0.00 0.00 0.00 3.51
488 502 4.517285 CCTTAAACCTCTGCAAGCATCTA 58.483 43.478 0.00 0.00 0.00 1.98
519 534 6.405176 GGAATCCACTCATCTTCAAAATGGAC 60.405 42.308 0.00 0.00 37.58 4.02
522 537 6.519679 TGGAATCCACTCATCTTCAAAATG 57.480 37.500 0.00 0.00 0.00 2.32
523 538 7.398047 TGAATGGAATCCACTCATCTTCAAAAT 59.602 33.333 9.61 0.00 35.80 1.82
524 539 6.720748 TGAATGGAATCCACTCATCTTCAAAA 59.279 34.615 9.61 0.00 35.80 2.44
545 565 8.517062 CCTCTGAGAGGTTTAATTTGATGAAT 57.483 34.615 20.40 0.00 44.25 2.57
563 583 2.186384 CAAGCGCTCCCCTCTGAG 59.814 66.667 12.06 0.00 35.40 3.35
564 584 4.087892 GCAAGCGCTCCCCTCTGA 62.088 66.667 12.06 0.00 34.30 3.27
565 585 4.399395 TGCAAGCGCTCCCCTCTG 62.399 66.667 12.06 5.02 39.64 3.35
566 586 4.400961 GTGCAAGCGCTCCCCTCT 62.401 66.667 12.06 0.00 39.64 3.69
567 587 3.984193 ATGTGCAAGCGCTCCCCTC 62.984 63.158 12.06 3.68 39.64 4.30
568 588 3.574074 AATGTGCAAGCGCTCCCCT 62.574 57.895 12.06 0.00 39.64 4.79
569 589 3.056313 GAATGTGCAAGCGCTCCCC 62.056 63.158 12.06 2.17 39.64 4.81
573 593 0.169672 GTCATGAATGTGCAAGCGCT 59.830 50.000 2.64 2.64 39.64 5.92
574 594 1.129879 CGTCATGAATGTGCAAGCGC 61.130 55.000 0.00 0.00 39.24 5.92
624 676 8.142994 ACATTCATAATTCATAAGTCGACCAC 57.857 34.615 13.01 0.00 0.00 4.16
625 677 8.731275 AACATTCATAATTCATAAGTCGACCA 57.269 30.769 13.01 0.02 0.00 4.02
640 692 8.744568 TGCATGAACCTACATAACATTCATAA 57.255 30.769 0.00 0.00 37.80 1.90
641 693 8.785946 CATGCATGAACCTACATAACATTCATA 58.214 33.333 22.59 0.00 37.80 2.15
642 694 7.286087 ACATGCATGAACCTACATAACATTCAT 59.714 33.333 32.75 0.22 39.90 2.57
643 695 6.602803 ACATGCATGAACCTACATAACATTCA 59.397 34.615 32.75 0.00 34.03 2.57
644 696 6.914215 CACATGCATGAACCTACATAACATTC 59.086 38.462 32.75 0.00 29.74 2.67
645 697 6.681120 GCACATGCATGAACCTACATAACATT 60.681 38.462 32.75 1.36 41.59 2.71
646 698 5.221106 GCACATGCATGAACCTACATAACAT 60.221 40.000 32.75 2.07 41.59 2.71
648 700 4.336433 AGCACATGCATGAACCTACATAAC 59.664 41.667 32.75 4.04 45.16 1.89
649 701 4.336153 CAGCACATGCATGAACCTACATAA 59.664 41.667 32.75 0.00 45.16 1.90
650 702 3.878699 CAGCACATGCATGAACCTACATA 59.121 43.478 32.75 0.00 45.16 2.29
652 704 2.086094 CAGCACATGCATGAACCTACA 58.914 47.619 32.75 0.00 45.16 2.74
653 705 1.402968 CCAGCACATGCATGAACCTAC 59.597 52.381 32.75 14.00 45.16 3.18
654 706 1.682702 CCCAGCACATGCATGAACCTA 60.683 52.381 32.75 0.00 45.16 3.08
655 707 0.968901 CCCAGCACATGCATGAACCT 60.969 55.000 32.75 20.30 45.16 3.50
656 708 1.514087 CCCAGCACATGCATGAACC 59.486 57.895 32.75 18.51 45.16 3.62
658 710 1.077086 ACCCCAGCACATGCATGAA 59.923 52.632 32.75 0.00 45.16 2.57
659 711 1.679641 CACCCCAGCACATGCATGA 60.680 57.895 32.75 0.00 45.16 3.07
662 714 1.487850 TAGACACCCCAGCACATGCA 61.488 55.000 6.64 0.00 45.16 3.96
663 715 0.107017 ATAGACACCCCAGCACATGC 60.107 55.000 0.00 0.00 42.49 4.06
664 716 1.671979 CATAGACACCCCAGCACATG 58.328 55.000 0.00 0.00 0.00 3.21
673 1783 0.314302 AGATACGCGCATAGACACCC 59.686 55.000 5.73 0.00 0.00 4.61
681 1791 6.084925 GTGAAGTAGTATAAGATACGCGCAT 58.915 40.000 5.73 0.00 0.00 4.73
682 1792 5.446709 GTGAAGTAGTATAAGATACGCGCA 58.553 41.667 5.73 0.00 0.00 6.09
683 1793 4.850470 GGTGAAGTAGTATAAGATACGCGC 59.150 45.833 5.73 0.00 0.00 6.86
684 1794 5.993891 TGGTGAAGTAGTATAAGATACGCG 58.006 41.667 3.53 3.53 0.00 6.01
685 1795 6.741811 CGATGGTGAAGTAGTATAAGATACGC 59.258 42.308 0.00 0.00 0.00 4.42
686 1796 8.026341 TCGATGGTGAAGTAGTATAAGATACG 57.974 38.462 0.00 0.00 0.00 3.06
687 1797 9.776158 CATCGATGGTGAAGTAGTATAAGATAC 57.224 37.037 17.96 0.00 0.00 2.24
688 1798 9.734984 TCATCGATGGTGAAGTAGTATAAGATA 57.265 33.333 24.61 0.00 0.00 1.98
689 1799 8.516234 GTCATCGATGGTGAAGTAGTATAAGAT 58.484 37.037 24.61 0.00 0.00 2.40
690 1800 7.307811 CGTCATCGATGGTGAAGTAGTATAAGA 60.308 40.741 24.61 0.00 39.71 2.10
691 1801 6.797513 CGTCATCGATGGTGAAGTAGTATAAG 59.202 42.308 24.61 0.00 39.71 1.73
692 1802 6.484308 TCGTCATCGATGGTGAAGTAGTATAA 59.516 38.462 24.61 0.00 41.35 0.98
693 1803 5.993441 TCGTCATCGATGGTGAAGTAGTATA 59.007 40.000 24.61 0.00 41.35 1.47
694 1804 4.820173 TCGTCATCGATGGTGAAGTAGTAT 59.180 41.667 24.61 0.00 41.35 2.12
695 1805 4.193865 TCGTCATCGATGGTGAAGTAGTA 58.806 43.478 24.61 0.00 41.35 1.82
696 1806 3.014623 TCGTCATCGATGGTGAAGTAGT 58.985 45.455 24.61 0.00 41.35 2.73
697 1807 3.549019 CCTCGTCATCGATGGTGAAGTAG 60.549 52.174 24.61 12.13 45.21 2.57
698 1808 2.357952 CCTCGTCATCGATGGTGAAGTA 59.642 50.000 24.61 0.82 45.21 2.24
699 1809 1.135139 CCTCGTCATCGATGGTGAAGT 59.865 52.381 24.61 0.00 45.21 3.01
700 1810 1.135139 ACCTCGTCATCGATGGTGAAG 59.865 52.381 24.61 17.30 45.21 3.02
701 1811 1.182667 ACCTCGTCATCGATGGTGAA 58.817 50.000 24.61 2.79 45.21 3.18
702 1812 2.047002 TACCTCGTCATCGATGGTGA 57.953 50.000 24.61 19.79 45.21 4.02
703 1813 2.099263 ACTTACCTCGTCATCGATGGTG 59.901 50.000 24.61 16.85 45.21 4.17
704 1814 2.376109 ACTTACCTCGTCATCGATGGT 58.624 47.619 24.61 16.41 45.21 3.55
705 1815 3.564644 ACTACTTACCTCGTCATCGATGG 59.435 47.826 24.61 11.19 45.21 3.51
706 1816 4.815040 ACTACTTACCTCGTCATCGATG 57.185 45.455 19.61 19.61 45.21 3.84
721 1831 5.015515 GGAGGGAGTACTGTACAACTACTT 58.984 45.833 19.27 2.49 0.00 2.24
732 1842 5.848833 ATTAGTTTACGGAGGGAGTACTG 57.151 43.478 0.00 0.00 0.00 2.74
733 1843 9.646522 TTTATATTAGTTTACGGAGGGAGTACT 57.353 33.333 0.00 0.00 0.00 2.73
736 1846 7.930325 GCTTTTATATTAGTTTACGGAGGGAGT 59.070 37.037 0.00 0.00 0.00 3.85
737 1847 7.115947 CGCTTTTATATTAGTTTACGGAGGGAG 59.884 40.741 0.00 0.00 0.00 4.30
738 1848 6.925165 CGCTTTTATATTAGTTTACGGAGGGA 59.075 38.462 0.00 0.00 0.00 4.20
739 1849 6.703165 ACGCTTTTATATTAGTTTACGGAGGG 59.297 38.462 0.00 0.00 0.00 4.30
740 1850 7.704789 ACGCTTTTATATTAGTTTACGGAGG 57.295 36.000 0.00 0.00 0.00 4.30
748 1858 8.753175 CGCTCTCTAAACGCTTTTATATTAGTT 58.247 33.333 0.00 0.00 0.00 2.24
749 1859 7.919621 ACGCTCTCTAAACGCTTTTATATTAGT 59.080 33.333 0.00 0.00 0.00 2.24
750 1860 8.283340 ACGCTCTCTAAACGCTTTTATATTAG 57.717 34.615 0.00 0.00 0.00 1.73
751 1861 8.638685 AACGCTCTCTAAACGCTTTTATATTA 57.361 30.769 0.00 0.00 0.00 0.98
752 1862 7.535489 AACGCTCTCTAAACGCTTTTATATT 57.465 32.000 0.00 0.00 0.00 1.28
753 1863 7.535489 AAACGCTCTCTAAACGCTTTTATAT 57.465 32.000 0.00 0.00 0.00 0.86
754 1864 6.956299 AAACGCTCTCTAAACGCTTTTATA 57.044 33.333 0.00 0.00 0.00 0.98
755 1865 5.857822 AAACGCTCTCTAAACGCTTTTAT 57.142 34.783 0.00 0.00 0.00 1.40
756 1866 6.151691 TCTAAACGCTCTCTAAACGCTTTTA 58.848 36.000 0.00 0.00 0.00 1.52
757 1867 4.986659 TCTAAACGCTCTCTAAACGCTTTT 59.013 37.500 0.00 0.00 0.00 2.27
758 1868 4.553323 TCTAAACGCTCTCTAAACGCTTT 58.447 39.130 0.00 0.00 0.00 3.51
759 1869 4.170292 TCTAAACGCTCTCTAAACGCTT 57.830 40.909 0.00 0.00 0.00 4.68
760 1870 3.844577 TCTAAACGCTCTCTAAACGCT 57.155 42.857 0.00 0.00 0.00 5.07
761 1871 5.742926 AGTATTCTAAACGCTCTCTAAACGC 59.257 40.000 0.00 0.00 0.00 4.84
762 1872 8.732227 GTTAGTATTCTAAACGCTCTCTAAACG 58.268 37.037 0.00 0.00 37.81 3.60
763 1873 9.565213 TGTTAGTATTCTAAACGCTCTCTAAAC 57.435 33.333 0.00 0.00 37.81 2.01
767 1877 9.122779 ACTATGTTAGTATTCTAAACGCTCTCT 57.877 33.333 0.00 0.00 37.81 3.10
768 1878 9.171701 CACTATGTTAGTATTCTAAACGCTCTC 57.828 37.037 0.00 0.00 37.81 3.20
769 1879 8.900781 TCACTATGTTAGTATTCTAAACGCTCT 58.099 33.333 0.00 0.00 37.81 4.09
770 1880 9.171701 CTCACTATGTTAGTATTCTAAACGCTC 57.828 37.037 0.00 0.00 37.81 5.03
771 1881 7.648510 GCTCACTATGTTAGTATTCTAAACGCT 59.351 37.037 0.00 0.00 37.81 5.07
772 1882 7.648510 AGCTCACTATGTTAGTATTCTAAACGC 59.351 37.037 0.00 0.00 37.81 4.84
812 1922 9.317827 TGTTAAGTACTCCCTCTGTAAACTAAT 57.682 33.333 0.00 0.00 0.00 1.73
813 1923 8.710749 TGTTAAGTACTCCCTCTGTAAACTAA 57.289 34.615 0.00 0.00 0.00 2.24
814 1924 8.710749 TTGTTAAGTACTCCCTCTGTAAACTA 57.289 34.615 0.00 0.00 0.00 2.24
815 1925 7.607615 TTGTTAAGTACTCCCTCTGTAAACT 57.392 36.000 0.00 0.00 0.00 2.66
816 1926 7.095899 CGTTTGTTAAGTACTCCCTCTGTAAAC 60.096 40.741 0.00 0.59 0.00 2.01
817 1927 6.925165 CGTTTGTTAAGTACTCCCTCTGTAAA 59.075 38.462 0.00 0.00 0.00 2.01
818 1928 6.265196 TCGTTTGTTAAGTACTCCCTCTGTAA 59.735 38.462 0.00 0.00 0.00 2.41
819 1929 5.769662 TCGTTTGTTAAGTACTCCCTCTGTA 59.230 40.000 0.00 0.00 0.00 2.74
820 1930 4.586001 TCGTTTGTTAAGTACTCCCTCTGT 59.414 41.667 0.00 0.00 0.00 3.41
821 1931 4.922103 GTCGTTTGTTAAGTACTCCCTCTG 59.078 45.833 0.00 0.00 0.00 3.35
822 1932 4.021632 GGTCGTTTGTTAAGTACTCCCTCT 60.022 45.833 0.00 0.00 0.00 3.69
823 1933 4.240888 GGTCGTTTGTTAAGTACTCCCTC 58.759 47.826 0.00 0.00 0.00 4.30
824 1934 3.305608 CGGTCGTTTGTTAAGTACTCCCT 60.306 47.826 0.00 0.00 0.00 4.20
825 1935 2.989166 CGGTCGTTTGTTAAGTACTCCC 59.011 50.000 0.00 0.00 0.00 4.30
826 1936 2.989166 CCGGTCGTTTGTTAAGTACTCC 59.011 50.000 0.00 0.00 0.00 3.85
827 1937 3.670523 GTCCGGTCGTTTGTTAAGTACTC 59.329 47.826 0.00 0.00 0.00 2.59
828 1938 3.552890 GGTCCGGTCGTTTGTTAAGTACT 60.553 47.826 0.00 0.00 0.00 2.73
829 1939 2.731451 GGTCCGGTCGTTTGTTAAGTAC 59.269 50.000 0.00 0.00 0.00 2.73
886 2000 3.181489 ACCATCGTTAGGAACTCGTGATC 60.181 47.826 0.00 0.00 41.75 2.92
900 2014 5.110814 TCCTCCATCATTTAACCATCGTT 57.889 39.130 0.00 0.00 35.90 3.85
901 2015 4.771114 TCCTCCATCATTTAACCATCGT 57.229 40.909 0.00 0.00 0.00 3.73
942 2056 2.981859 AAGTCAAACTGGACAGACGT 57.018 45.000 6.29 0.00 40.29 4.34
955 2069 6.655003 AGGCTTTCTCGATCAAATAAAGTCAA 59.345 34.615 11.60 0.00 34.91 3.18
1600 2830 3.068691 CTTCCGGCCGTCTCTGGA 61.069 66.667 26.12 10.20 39.65 3.86
1603 2833 3.441290 CGTCTTCCGGCCGTCTCT 61.441 66.667 26.12 0.00 0.00 3.10
1861 3128 2.154462 GGTGCCACCTACATATGCATC 58.846 52.381 6.63 0.00 34.73 3.91
1916 3344 4.081862 CCAATGCAGGTCTTTGACATGATT 60.082 41.667 15.12 9.30 45.54 2.57
2014 3446 5.450376 TCTCGAAACGAATCTAATTGCAC 57.550 39.130 0.00 0.00 34.74 4.57
2134 3656 6.765989 TGTCCTATTCATTTTATTGGACGGAG 59.234 38.462 10.37 0.00 45.17 4.63
2135 3657 6.540914 GTGTCCTATTCATTTTATTGGACGGA 59.459 38.462 10.37 0.00 45.17 4.69
2136 3658 6.511121 CGTGTCCTATTCATTTTATTGGACGG 60.511 42.308 10.37 3.76 45.17 4.79
2137 3659 6.418956 CGTGTCCTATTCATTTTATTGGACG 58.581 40.000 10.37 0.00 45.17 4.79
2138 3660 6.183360 TGCGTGTCCTATTCATTTTATTGGAC 60.183 38.462 8.78 8.78 43.64 4.02
2139 3661 5.883115 TGCGTGTCCTATTCATTTTATTGGA 59.117 36.000 0.00 0.00 0.00 3.53
2140 3662 5.971202 GTGCGTGTCCTATTCATTTTATTGG 59.029 40.000 0.00 0.00 0.00 3.16
2141 3663 5.676744 CGTGCGTGTCCTATTCATTTTATTG 59.323 40.000 0.00 0.00 0.00 1.90
2143 3665 4.873827 ACGTGCGTGTCCTATTCATTTTAT 59.126 37.500 0.00 0.00 0.00 1.40
2144 3666 4.247258 ACGTGCGTGTCCTATTCATTTTA 58.753 39.130 0.00 0.00 0.00 1.52
2145 3667 3.071479 ACGTGCGTGTCCTATTCATTTT 58.929 40.909 0.00 0.00 0.00 1.82
2146 3668 2.695359 ACGTGCGTGTCCTATTCATTT 58.305 42.857 0.00 0.00 0.00 2.32
2176 3706 7.589958 TTGCCTAATTTTGGTCAAAGTAAGA 57.410 32.000 0.00 0.00 0.00 2.10
2282 3821 7.282585 TCAACTAGATCAATCAAATGTAGGGG 58.717 38.462 0.00 0.00 0.00 4.79
2309 3848 7.706179 CCACACACATTTTAATGAACTTTGACT 59.294 33.333 9.32 0.00 39.67 3.41
2333 3875 0.482446 ACTCCAATGAACAAGGCCCA 59.518 50.000 0.00 0.00 0.00 5.36
2341 3883 0.034089 CCCCCTCCACTCCAATGAAC 60.034 60.000 0.00 0.00 0.00 3.18
2375 3917 7.375834 ACAAGTAGTACAAATTGATCGACTGA 58.624 34.615 0.00 0.00 0.00 3.41
2376 3918 7.582435 ACAAGTAGTACAAATTGATCGACTG 57.418 36.000 0.00 2.95 0.00 3.51
2378 3920 8.492748 TGAAACAAGTAGTACAAATTGATCGAC 58.507 33.333 0.00 0.00 0.00 4.20
2380 3922 9.265938 CATGAAACAAGTAGTACAAATTGATCG 57.734 33.333 0.00 0.00 0.00 3.69
2381 3923 9.559958 CCATGAAACAAGTAGTACAAATTGATC 57.440 33.333 0.00 4.39 0.00 2.92
2382 3924 8.028938 GCCATGAAACAAGTAGTACAAATTGAT 58.971 33.333 0.00 0.00 0.00 2.57
2384 3926 7.144661 TGCCATGAAACAAGTAGTACAAATTG 58.855 34.615 2.52 1.35 0.00 2.32
2385 3927 7.283625 TGCCATGAAACAAGTAGTACAAATT 57.716 32.000 2.52 0.00 0.00 1.82
2386 3928 6.892658 TGCCATGAAACAAGTAGTACAAAT 57.107 33.333 2.52 0.00 0.00 2.32
2388 3930 5.590663 TGTTGCCATGAAACAAGTAGTACAA 59.409 36.000 10.43 0.00 34.68 2.41
2389 3931 5.126779 TGTTGCCATGAAACAAGTAGTACA 58.873 37.500 10.43 0.00 34.68 2.90
2390 3932 5.682943 TGTTGCCATGAAACAAGTAGTAC 57.317 39.130 10.43 0.00 34.68 2.73
2391 3933 6.892658 AATGTTGCCATGAAACAAGTAGTA 57.107 33.333 15.16 0.00 40.69 1.82
2393 3935 6.700960 TCAAAATGTTGCCATGAAACAAGTAG 59.299 34.615 15.16 8.44 40.69 2.57
2396 3961 5.524646 ACTCAAAATGTTGCCATGAAACAAG 59.475 36.000 15.16 11.04 40.69 3.16
2437 4002 5.297278 GTGTGGTGGTTTAGTGTAATCAACA 59.703 40.000 0.00 0.00 35.06 3.33
2441 4006 5.302360 TCAGTGTGGTGGTTTAGTGTAATC 58.698 41.667 0.00 0.00 0.00 1.75
2449 4014 2.047061 AGCTCTCAGTGTGGTGGTTTA 58.953 47.619 0.00 0.00 0.00 2.01
2453 4018 0.534412 CCTAGCTCTCAGTGTGGTGG 59.466 60.000 0.00 0.00 0.00 4.61
2461 4026 3.325293 TTCTGCAAACCTAGCTCTCAG 57.675 47.619 0.00 0.00 0.00 3.35
2483 4048 0.326927 ACAAACCCATAGACCGGTGG 59.673 55.000 14.63 9.58 35.22 4.61
2489 4054 5.746721 GTGTTTTTGTCACAAACCCATAGAC 59.253 40.000 1.28 0.02 33.83 2.59
2490 4055 5.654650 AGTGTTTTTGTCACAAACCCATAGA 59.345 36.000 1.28 0.00 38.16 1.98
2527 4092 6.680810 CCAATCAGTGTTTATGCAAAGAGAA 58.319 36.000 0.00 0.00 0.00 2.87
2547 4112 0.783850 AACCCACCTAACCAGCCAAT 59.216 50.000 0.00 0.00 0.00 3.16
2553 4118 3.025262 GTCACAAAAACCCACCTAACCA 58.975 45.455 0.00 0.00 0.00 3.67
2554 4119 3.025262 TGTCACAAAAACCCACCTAACC 58.975 45.455 0.00 0.00 0.00 2.85
2558 4123 3.603158 GTTTGTCACAAAAACCCACCT 57.397 42.857 4.02 0.00 32.49 4.00
2572 4138 3.751518 ACCATTGGTCTACAGGTTTGTC 58.248 45.455 1.37 0.00 38.76 3.18
2579 4145 3.411446 TGCAGAAACCATTGGTCTACAG 58.589 45.455 9.22 2.38 33.12 2.74
2608 4183 8.508875 AGATAAGTTAATAACACAAAACCACCG 58.491 33.333 5.89 0.00 0.00 4.94
2630 4205 9.529325 CGTTTCCTCTTGTGAACATAATAGATA 57.471 33.333 0.00 0.00 0.00 1.98
2633 4208 7.596749 ACGTTTCCTCTTGTGAACATAATAG 57.403 36.000 0.00 0.00 0.00 1.73
2659 5932 2.979814 TGAACATGCCACGTATAGCT 57.020 45.000 0.00 0.00 0.00 3.32
2661 5934 7.477144 TTTTCTATGAACATGCCACGTATAG 57.523 36.000 0.00 0.00 0.00 1.31
2670 5943 6.567050 ACACATGGATTTTCTATGAACATGC 58.433 36.000 7.71 1.54 37.52 4.06
2675 5948 9.295825 AGTTGTAACACATGGATTTTCTATGAA 57.704 29.630 7.71 0.00 37.52 2.57
2731 6020 7.390823 TGTGTTAATCATACATGTACCACACT 58.609 34.615 7.96 0.00 32.89 3.55
2734 6023 8.941977 TCTTTGTGTTAATCATACATGTACCAC 58.058 33.333 7.96 7.16 0.00 4.16
2860 6151 5.385198 GGAGTTTATTCCCATGCCTCAATA 58.615 41.667 0.00 0.00 0.00 1.90
2907 6395 9.182214 ACGATAAACTTGTCTTGTAGTCCTATA 57.818 33.333 0.00 0.00 0.00 1.31
2966 6454 0.605319 TGCCACGATGAACCTCAACC 60.605 55.000 0.00 0.00 0.00 3.77
3021 6509 1.374758 CAGAAGGTCACCACGGAGC 60.375 63.158 0.00 0.00 35.57 4.70
3052 6540 6.261603 ACATATGATGCACAAATCACCTGTAG 59.738 38.462 10.38 0.00 39.32 2.74
3091 6581 9.189156 ACAATAGATGGCTTAAGAAAAGCAATA 57.811 29.630 6.67 0.00 44.71 1.90
3116 6610 7.934457 AGGTGAATGCAATGAAGTATGATTAC 58.066 34.615 0.00 0.00 0.00 1.89
3162 6663 5.300034 TGAGAAGACAAATGTTGCAACTGAT 59.700 36.000 28.61 13.41 0.00 2.90
3168 6669 3.202097 TCGTGAGAAGACAAATGTTGCA 58.798 40.909 0.00 0.00 37.03 4.08
3201 6702 3.380637 CGGTACTAAGTACTCCAGCATGT 59.619 47.826 0.00 0.00 38.85 3.21
3241 6742 9.079833 GGAACAGTCAAATCAAATAATGTGATG 57.920 33.333 0.00 0.00 35.87 3.07
3333 7136 9.221775 CAAAATAAACATGGCTCGACTTATTAC 57.778 33.333 0.00 0.00 0.00 1.89
3364 7167 4.260375 CGAAGCCAATGTGCTGACTATAAC 60.260 45.833 0.00 0.00 41.80 1.89
3441 8936 8.391106 CACCGAAAATTAGTAGAGAGGAAAATG 58.609 37.037 0.00 0.00 0.00 2.32
3479 8975 5.590104 AAAATTCATTGCGGTTTTACAGC 57.410 34.783 0.00 0.00 39.77 4.40
3484 8980 7.489574 ACATACAAAAATTCATTGCGGTTTT 57.510 28.000 4.35 0.00 0.00 2.43
3519 9015 7.971455 GTGAACTCCACATACAAAACCTATAC 58.029 38.462 0.00 0.00 45.03 1.47
3557 9053 5.840940 ACCTGATAAAGAAACGAACTTCG 57.159 39.130 9.68 9.68 46.93 3.79
3565 9061 9.196552 CATTTTTGGAGAACCTGATAAAGAAAC 57.803 33.333 0.00 0.00 37.04 2.78
3593 9089 3.972502 CCGGTTTTCTAAAAGAACTTGCG 59.027 43.478 0.00 0.00 33.26 4.85
3605 9101 3.457610 AACGACAAGTCCGGTTTTCTA 57.542 42.857 0.00 0.00 0.00 2.10
3662 9756 5.006941 CCGGTTTAACTTTGTTTTCGAGAGA 59.993 40.000 0.00 0.00 39.20 3.10
3663 9757 5.202640 CCGGTTTAACTTTGTTTTCGAGAG 58.797 41.667 0.00 0.00 0.00 3.20
3664 9758 4.635324 ACCGGTTTAACTTTGTTTTCGAGA 59.365 37.500 0.00 0.00 0.00 4.04
3667 9762 7.854916 TGTTATACCGGTTTAACTTTGTTTTCG 59.145 33.333 33.51 0.00 31.30 3.46
3733 9841 5.586643 GCAAAACAAGATTCTCCTACCTAGG 59.413 44.000 7.41 7.41 45.02 3.02
3745 9853 7.379529 CGATACTGTTCAAAGCAAAACAAGATT 59.620 33.333 0.00 0.00 35.13 2.40
3801 9914 4.262506 GGGAGTCACGATTTTATAGGGAGG 60.263 50.000 0.00 0.00 0.00 4.30
3867 9980 3.613432 GCTTGTTCCCATCTTTTGCTCTG 60.613 47.826 0.00 0.00 0.00 3.35
3920 10033 3.503363 GGCGACCATCAGCAGCAC 61.503 66.667 0.00 0.00 34.54 4.40
4086 10206 3.686016 GGCATTACCTATACATGGGTGG 58.314 50.000 7.46 0.00 42.09 4.61
4099 10219 0.531090 TCCACGCATACGGCATTACC 60.531 55.000 0.00 0.00 46.04 2.85
4100 10220 1.194547 CATCCACGCATACGGCATTAC 59.805 52.381 0.00 0.00 46.04 1.89
4102 10222 0.179059 TCATCCACGCATACGGCATT 60.179 50.000 0.00 0.00 46.04 3.56
4103 10223 0.179059 TTCATCCACGCATACGGCAT 60.179 50.000 0.00 0.00 46.04 4.40
4104 10224 0.391793 TTTCATCCACGCATACGGCA 60.392 50.000 0.00 0.00 46.04 5.69
4105 10225 0.027586 GTTTCATCCACGCATACGGC 59.972 55.000 0.00 0.00 46.04 5.68
4106 10226 0.655733 GGTTTCATCCACGCATACGG 59.344 55.000 0.00 0.00 46.04 4.02
4123 10243 3.045492 CGGGTTAAACAGCGCGGT 61.045 61.111 7.58 7.58 37.39 5.68
4137 10257 3.426117 AACGCATCGAGTAGCCGGG 62.426 63.158 2.18 0.00 0.00 5.73
4147 10267 2.866510 CTGCAACGCAACGCATCG 60.867 61.111 0.00 0.00 38.41 3.84
4188 10316 1.947146 CGGCGTCGTGAAGTTGACA 60.947 57.895 0.00 0.00 34.78 3.58
4212 10340 1.139095 GATCCAGTGGTCCGACGAC 59.861 63.158 9.54 5.59 38.38 4.34
4215 10343 2.494918 CCGATCCAGTGGTCCGAC 59.505 66.667 21.45 0.00 0.00 4.79
4281 10409 1.150308 TTAAGCTGGTGGTGCAGCA 59.850 52.632 15.99 15.99 46.10 4.41
4282 10410 1.172180 TGTTAAGCTGGTGGTGCAGC 61.172 55.000 9.47 9.47 44.20 5.25
4284 10412 1.246649 CATGTTAAGCTGGTGGTGCA 58.753 50.000 0.00 0.00 0.00 4.57
4287 10415 2.371841 TCTGACATGTTAAGCTGGTGGT 59.628 45.455 0.00 0.00 0.00 4.16
4288 10416 3.057969 TCTGACATGTTAAGCTGGTGG 57.942 47.619 0.00 0.00 0.00 4.61
4289 10417 6.595326 TCTTAATCTGACATGTTAAGCTGGTG 59.405 38.462 0.00 0.00 36.09 4.17
4290 10418 6.711277 TCTTAATCTGACATGTTAAGCTGGT 58.289 36.000 0.00 0.00 36.09 4.00
4291 10419 7.496920 TGATCTTAATCTGACATGTTAAGCTGG 59.503 37.037 0.00 0.00 36.09 4.85
4292 10420 8.333908 GTGATCTTAATCTGACATGTTAAGCTG 58.666 37.037 0.00 0.00 36.09 4.24
4293 10421 8.043113 TGTGATCTTAATCTGACATGTTAAGCT 58.957 33.333 0.00 0.00 36.09 3.74
4294 10422 8.201554 TGTGATCTTAATCTGACATGTTAAGC 57.798 34.615 0.00 0.00 36.09 3.09
4297 10425 9.034544 CGATTGTGATCTTAATCTGACATGTTA 57.965 33.333 0.00 0.00 32.48 2.41
4298 10426 7.466455 GCGATTGTGATCTTAATCTGACATGTT 60.466 37.037 0.00 0.00 32.48 2.71
4300 10428 6.361114 GCGATTGTGATCTTAATCTGACATG 58.639 40.000 15.62 0.00 32.48 3.21
4301 10429 5.468072 GGCGATTGTGATCTTAATCTGACAT 59.532 40.000 15.62 0.00 32.48 3.06
4302 10430 4.811024 GGCGATTGTGATCTTAATCTGACA 59.189 41.667 15.62 0.00 32.48 3.58
4303 10431 4.811024 TGGCGATTGTGATCTTAATCTGAC 59.189 41.667 15.62 12.77 32.48 3.51
4304 10432 4.811024 GTGGCGATTGTGATCTTAATCTGA 59.189 41.667 15.62 0.00 32.48 3.27
4305 10433 4.571984 TGTGGCGATTGTGATCTTAATCTG 59.428 41.667 15.62 11.79 32.48 2.90
4307 10435 4.572389 ACTGTGGCGATTGTGATCTTAATC 59.428 41.667 10.59 10.59 0.00 1.75
4308 10436 4.517285 ACTGTGGCGATTGTGATCTTAAT 58.483 39.130 0.00 0.00 0.00 1.40
4309 10437 3.937814 ACTGTGGCGATTGTGATCTTAA 58.062 40.909 0.00 0.00 0.00 1.85
4311 10439 2.479566 ACTGTGGCGATTGTGATCTT 57.520 45.000 0.00 0.00 0.00 2.40
4313 10441 3.262420 ACTAACTGTGGCGATTGTGATC 58.738 45.455 0.00 0.00 0.00 2.92
4314 10442 3.334583 ACTAACTGTGGCGATTGTGAT 57.665 42.857 0.00 0.00 0.00 3.06
4333 10465 8.851960 TCAACAGATGTCATTATACGAGTAAC 57.148 34.615 0.00 0.00 0.00 2.50
4337 10469 7.489435 ACAACTCAACAGATGTCATTATACGAG 59.511 37.037 0.00 0.00 29.91 4.18
4338 10470 7.320399 ACAACTCAACAGATGTCATTATACGA 58.680 34.615 0.00 0.00 29.91 3.43
4339 10471 7.525688 ACAACTCAACAGATGTCATTATACG 57.474 36.000 0.00 0.00 29.91 3.06
4349 10491 1.195448 GCACGGACAACTCAACAGATG 59.805 52.381 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.