Multiple sequence alignment - TraesCS5D01G292100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G292100 chr5D 100.000 8176 0 0 1 8176 389587007 389595182 0.000000e+00 15099.0
1 TraesCS5D01G292100 chr5D 92.857 98 7 0 2195 2292 389589058 389589155 8.550000e-30 143.0
2 TraesCS5D01G292100 chr5D 92.857 98 7 0 2052 2149 389589201 389589298 8.550000e-30 143.0
3 TraesCS5D01G292100 chr5A 95.600 5432 164 29 2781 8176 492896796 492902188 0.000000e+00 8637.0
4 TraesCS5D01G292100 chr5A 92.846 1258 54 10 685 1928 492894448 492895683 0.000000e+00 1792.0
5 TraesCS5D01G292100 chr5A 93.128 553 30 7 1927 2478 492895717 492896262 0.000000e+00 804.0
6 TraesCS5D01G292100 chr5A 95.114 307 14 1 2477 2782 492896366 492896672 4.440000e-132 483.0
7 TraesCS5D01G292100 chr5A 80.788 203 13 13 128 309 492894192 492894389 1.430000e-27 135.0
8 TraesCS5D01G292100 chr5A 95.890 73 2 1 399 471 164295313 164295242 5.180000e-22 117.0
9 TraesCS5D01G292100 chr5B 95.649 2666 67 14 3381 6021 469823614 469826255 0.000000e+00 4235.0
10 TraesCS5D01G292100 chr5B 95.617 1597 55 8 6067 7659 469826611 469828196 0.000000e+00 2547.0
11 TraesCS5D01G292100 chr5B 94.910 1336 45 12 751 2072 469820795 469822121 0.000000e+00 2069.0
12 TraesCS5D01G292100 chr5B 95.741 1268 48 5 2122 3385 469822118 469823383 0.000000e+00 2037.0
13 TraesCS5D01G292100 chr5B 91.743 436 20 3 7741 8176 469828226 469828645 7.070000e-165 592.0
14 TraesCS5D01G292100 chr5B 80.688 378 46 17 3041 3408 702476006 702476366 1.350000e-67 268.0
15 TraesCS5D01G292100 chr5B 96.226 53 2 0 256 308 469820635 469820687 4.070000e-13 87.9
16 TraesCS5D01G292100 chr7D 93.280 997 52 7 4281 5264 565906179 565907173 0.000000e+00 1456.0
17 TraesCS5D01G292100 chr7D 90.314 764 56 6 3551 4298 565905406 565906167 0.000000e+00 985.0
18 TraesCS5D01G292100 chr7D 92.575 633 44 1 2463 3092 565867315 565867947 0.000000e+00 905.0
19 TraesCS5D01G292100 chr7D 90.631 491 29 8 3084 3568 565870452 565870931 3.220000e-178 636.0
20 TraesCS5D01G292100 chr7D 86.965 537 54 12 1220 1750 565744909 565745435 2.540000e-164 590.0
21 TraesCS5D01G292100 chr7D 90.164 183 17 1 1746 1928 565866763 565866944 3.810000e-58 237.0
22 TraesCS5D01G292100 chr7D 83.913 230 24 8 1929 2155 565866982 565867201 2.990000e-49 207.0
23 TraesCS5D01G292100 chr4A 80.084 949 126 31 2449 3362 617365634 617364714 0.000000e+00 647.0
24 TraesCS5D01G292100 chr4A 90.813 283 19 5 409 689 729701492 729701215 1.000000e-98 372.0
25 TraesCS5D01G292100 chr7B 92.281 285 12 5 409 683 518193839 518193555 5.950000e-106 396.0
26 TraesCS5D01G292100 chr3D 91.579 285 14 6 409 683 262898238 262897954 1.290000e-102 385.0
27 TraesCS5D01G292100 chr3D 91.579 285 14 5 409 683 355275936 355275652 1.290000e-102 385.0
28 TraesCS5D01G292100 chr4D 91.727 278 16 5 409 683 274545163 274544890 5.990000e-101 379.0
29 TraesCS5D01G292100 chr4D 91.071 112 5 2 409 519 423882842 423882949 6.610000e-31 147.0
30 TraesCS5D01G292100 chr1A 91.697 277 17 4 409 683 397019709 397019437 5.990000e-101 379.0
31 TraesCS5D01G292100 chr1A 95.890 73 2 1 399 471 559668810 559668881 5.180000e-22 117.0
32 TraesCS5D01G292100 chr3B 92.000 275 12 5 419 683 157135683 157135957 2.150000e-100 377.0
33 TraesCS5D01G292100 chr2D 90.647 278 19 6 409 683 449124078 449123805 6.030000e-96 363.0
34 TraesCS5D01G292100 chr2B 89.781 274 19 6 418 683 241466636 241466364 7.860000e-90 342.0
35 TraesCS5D01G292100 chr7A 95.890 73 2 1 399 471 63007145 63007074 5.180000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G292100 chr5D 389587007 389595182 8175 False 15099.000000 15099 100.00000 1 8176 1 chr5D.!!$F1 8175
1 TraesCS5D01G292100 chr5A 492894192 492902188 7996 False 2370.200000 8637 91.49520 128 8176 5 chr5A.!!$F1 8048
2 TraesCS5D01G292100 chr5B 469820635 469828645 8010 False 1927.983333 4235 94.98100 256 8176 6 chr5B.!!$F2 7920
3 TraesCS5D01G292100 chr7D 565905406 565907173 1767 False 1220.500000 1456 91.79700 3551 5264 2 chr7D.!!$F3 1713
4 TraesCS5D01G292100 chr7D 565744909 565745435 526 False 590.000000 590 86.96500 1220 1750 1 chr7D.!!$F1 530
5 TraesCS5D01G292100 chr7D 565866763 565870931 4168 False 496.250000 905 89.32075 1746 3568 4 chr7D.!!$F2 1822
6 TraesCS5D01G292100 chr4A 617364714 617365634 920 True 647.000000 647 80.08400 2449 3362 1 chr4A.!!$R1 913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.027716 CAGCGCAGATGCAGATGAAC 59.972 55.000 11.47 0.00 36.84 3.18 F
602 664 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20 F
603 665 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10 F
1091 1161 0.394899 GGCAACATCAAGGGGAGGAG 60.395 60.000 0.00 0.00 0.00 3.69 F
2275 2401 0.177604 TGGCCTGCAAAACAAACCTG 59.822 50.000 3.32 0.00 0.00 4.00 F
3401 6544 2.159627 CCAAGTGTTTATCAGTGCGGTC 59.840 50.000 0.00 0.00 0.00 4.79 F
4307 7500 3.325425 TGTTATCTTTGTCAGTTCCCGGA 59.675 43.478 0.73 0.00 0.00 5.14 F
5406 8624 8.303876 TCCTCAAATATTTTGCAGGTTTTCTAC 58.696 33.333 13.68 0.00 0.00 2.59 F
5424 8642 0.317479 ACGGTGTTCTCCTGCAGTAC 59.683 55.000 13.81 5.82 0.00 2.73 F
6720 10250 0.392193 ACCATGCTTCAAGAGAGCCG 60.392 55.000 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1627 0.179000 CCTTGGACCCAGGAATCTCG 59.821 60.000 5.64 0.0 0.00 4.04 R
1880 1968 0.462047 CGTCACCAATAGGCACCTCC 60.462 60.000 0.00 0.0 39.06 4.30 R
2248 2374 1.067635 GTTTTGCAGGCCATCGACAAT 60.068 47.619 5.01 0.0 0.00 2.71 R
3034 3418 1.251251 GCTCTTGTGACCCTGCAAAT 58.749 50.000 0.00 0.0 0.00 2.32 R
4256 7420 1.431496 GCCCATGCACAACAATCAAC 58.569 50.000 0.00 0.0 37.47 3.18 R
5123 8341 3.201487 AGATCTTCATCCTTGCCATGTGA 59.799 43.478 0.00 0.0 0.00 3.58 R
5406 8624 0.603569 AGTACTGCAGGAGAACACCG 59.396 55.000 19.93 0.0 34.73 4.94 R
6807 10337 0.032678 ACAGAGACAAGACACTGGCG 59.967 55.000 0.00 0.0 33.93 5.69 R
6840 10370 0.179020 CAACAGAACAGGACAGGCCA 60.179 55.000 5.01 0.0 40.02 5.36 R
7904 11443 0.034756 TAATGCACGCTGTGGTGAGT 59.965 50.000 10.02 0.0 40.38 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 4.120085 CAGCGCAGATGCAGATGA 57.880 55.556 11.47 0.00 36.84 2.92
89 90 2.390427 CAGCGCAGATGCAGATGAA 58.610 52.632 11.47 0.00 36.84 2.57
90 91 0.027716 CAGCGCAGATGCAGATGAAC 59.972 55.000 11.47 0.00 36.84 3.18
91 92 0.107800 AGCGCAGATGCAGATGAACT 60.108 50.000 11.47 0.00 42.21 3.01
92 93 0.304098 GCGCAGATGCAGATGAACTC 59.696 55.000 0.30 0.00 42.21 3.01
93 94 0.575859 CGCAGATGCAGATGAACTCG 59.424 55.000 5.55 0.00 42.21 4.18
94 95 0.935898 GCAGATGCAGATGAACTCGG 59.064 55.000 5.17 0.00 41.59 4.63
95 96 1.472201 GCAGATGCAGATGAACTCGGA 60.472 52.381 5.17 0.00 41.59 4.55
96 97 2.806019 GCAGATGCAGATGAACTCGGAT 60.806 50.000 5.17 0.00 41.59 4.18
97 98 2.801111 CAGATGCAGATGAACTCGGATG 59.199 50.000 0.00 0.00 0.00 3.51
98 99 1.530293 GATGCAGATGAACTCGGATGC 59.470 52.381 0.00 0.00 0.00 3.91
99 100 0.249955 TGCAGATGAACTCGGATGCA 59.750 50.000 0.00 0.00 41.05 3.96
100 101 1.134310 TGCAGATGAACTCGGATGCAT 60.134 47.619 0.00 0.00 38.64 3.96
101 102 2.102925 TGCAGATGAACTCGGATGCATA 59.897 45.455 0.00 0.00 38.64 3.14
102 103 2.735663 GCAGATGAACTCGGATGCATAG 59.264 50.000 0.00 0.00 33.92 2.23
103 104 3.553715 GCAGATGAACTCGGATGCATAGA 60.554 47.826 0.00 1.19 33.92 1.98
104 105 4.818642 CAGATGAACTCGGATGCATAGAT 58.181 43.478 0.00 0.00 0.00 1.98
105 106 4.626172 CAGATGAACTCGGATGCATAGATG 59.374 45.833 0.00 0.04 0.00 2.90
106 107 3.391506 TGAACTCGGATGCATAGATGG 57.608 47.619 0.00 0.00 0.00 3.51
107 108 2.965147 TGAACTCGGATGCATAGATGGA 59.035 45.455 0.00 0.00 0.00 3.41
108 109 3.580022 TGAACTCGGATGCATAGATGGAT 59.420 43.478 0.00 0.00 41.76 3.41
109 110 4.040829 TGAACTCGGATGCATAGATGGATT 59.959 41.667 0.00 0.00 39.04 3.01
110 111 4.630644 ACTCGGATGCATAGATGGATTT 57.369 40.909 0.00 0.00 39.04 2.17
111 112 4.978099 ACTCGGATGCATAGATGGATTTT 58.022 39.130 0.00 0.00 39.04 1.82
112 113 4.999950 ACTCGGATGCATAGATGGATTTTC 59.000 41.667 0.00 0.00 39.04 2.29
113 114 3.996363 TCGGATGCATAGATGGATTTTCG 59.004 43.478 0.00 4.17 39.04 3.46
114 115 3.425359 CGGATGCATAGATGGATTTTCGC 60.425 47.826 0.00 0.00 39.04 4.70
115 116 3.755378 GGATGCATAGATGGATTTTCGCT 59.245 43.478 0.00 0.00 39.04 4.93
116 117 4.937620 GGATGCATAGATGGATTTTCGCTA 59.062 41.667 0.00 0.00 39.04 4.26
117 118 5.587844 GGATGCATAGATGGATTTTCGCTAT 59.412 40.000 0.00 0.00 39.04 2.97
118 119 6.238320 GGATGCATAGATGGATTTTCGCTATC 60.238 42.308 0.00 0.00 39.04 2.08
119 120 5.798132 TGCATAGATGGATTTTCGCTATCT 58.202 37.500 0.00 0.00 33.15 1.98
120 121 6.233434 TGCATAGATGGATTTTCGCTATCTT 58.767 36.000 0.00 0.00 31.19 2.40
121 122 6.148315 TGCATAGATGGATTTTCGCTATCTTG 59.852 38.462 0.00 0.00 31.19 3.02
122 123 6.402983 GCATAGATGGATTTTCGCTATCTTGG 60.403 42.308 0.00 0.00 31.19 3.61
123 124 5.041191 AGATGGATTTTCGCTATCTTGGT 57.959 39.130 0.00 0.00 0.00 3.67
124 125 5.059833 AGATGGATTTTCGCTATCTTGGTC 58.940 41.667 0.00 0.00 0.00 4.02
125 126 3.541632 TGGATTTTCGCTATCTTGGTCC 58.458 45.455 0.00 0.00 0.00 4.46
126 127 2.879026 GGATTTTCGCTATCTTGGTCCC 59.121 50.000 0.00 0.00 0.00 4.46
149 150 9.367160 TCCCTTTCTTCAATCTTCTGTTTAATT 57.633 29.630 0.00 0.00 0.00 1.40
150 151 9.415544 CCCTTTCTTCAATCTTCTGTTTAATTG 57.584 33.333 0.00 0.00 0.00 2.32
187 193 4.322650 GCAAGAAGAAGAGAGTCCATCAGT 60.323 45.833 0.00 0.00 0.00 3.41
197 203 3.966006 AGAGTCCATCAGTCAGCATACAT 59.034 43.478 0.00 0.00 0.00 2.29
199 205 3.055591 GTCCATCAGTCAGCATACATCG 58.944 50.000 0.00 0.00 0.00 3.84
200 206 2.036346 TCCATCAGTCAGCATACATCGG 59.964 50.000 0.00 0.00 0.00 4.18
201 207 2.224137 CCATCAGTCAGCATACATCGGT 60.224 50.000 0.00 0.00 0.00 4.69
214 220 2.973945 ACATCGGTCCAGCTAAACTTC 58.026 47.619 0.00 0.00 0.00 3.01
215 221 2.567615 ACATCGGTCCAGCTAAACTTCT 59.432 45.455 0.00 0.00 0.00 2.85
216 222 3.190874 CATCGGTCCAGCTAAACTTCTC 58.809 50.000 0.00 0.00 0.00 2.87
217 223 2.244695 TCGGTCCAGCTAAACTTCTCA 58.755 47.619 0.00 0.00 0.00 3.27
221 227 3.244596 GGTCCAGCTAAACTTCTCAGGTT 60.245 47.826 0.00 0.00 33.16 3.50
224 230 3.496870 CCAGCTAAACTTCTCAGGTTGGT 60.497 47.826 0.00 0.00 30.78 3.67
226 232 3.075148 GCTAAACTTCTCAGGTTGGTCC 58.925 50.000 0.00 0.00 30.78 4.46
228 234 2.640316 AACTTCTCAGGTTGGTCCAC 57.360 50.000 0.00 0.00 39.02 4.02
241 247 2.122054 TCCACCCACCCCCGTTAA 60.122 61.111 0.00 0.00 0.00 2.01
366 387 4.020617 CGTGCCTCCCTTGCCTCA 62.021 66.667 0.00 0.00 0.00 3.86
408 470 4.344865 GCCGCCCAAACCTCCTCA 62.345 66.667 0.00 0.00 0.00 3.86
409 471 2.045926 CCGCCCAAACCTCCTCAG 60.046 66.667 0.00 0.00 0.00 3.35
410 472 2.592993 CCGCCCAAACCTCCTCAGA 61.593 63.158 0.00 0.00 0.00 3.27
411 473 1.078848 CGCCCAAACCTCCTCAGAG 60.079 63.158 0.00 0.00 40.09 3.35
412 474 1.377856 GCCCAAACCTCCTCAGAGC 60.378 63.158 0.00 0.00 38.96 4.09
413 475 2.069776 CCCAAACCTCCTCAGAGCA 58.930 57.895 0.00 0.00 38.96 4.26
414 476 0.622665 CCCAAACCTCCTCAGAGCAT 59.377 55.000 0.00 0.00 38.96 3.79
415 477 1.681166 CCCAAACCTCCTCAGAGCATG 60.681 57.143 0.00 0.00 38.96 4.06
416 478 1.681166 CCAAACCTCCTCAGAGCATGG 60.681 57.143 0.00 0.00 38.96 3.66
417 479 1.004044 CAAACCTCCTCAGAGCATGGT 59.996 52.381 0.00 0.00 38.96 3.55
418 480 1.366319 AACCTCCTCAGAGCATGGTT 58.634 50.000 0.00 11.79 38.96 3.67
419 481 2.254152 ACCTCCTCAGAGCATGGTTA 57.746 50.000 0.00 0.00 38.96 2.85
420 482 2.551270 ACCTCCTCAGAGCATGGTTAA 58.449 47.619 0.00 0.00 38.96 2.01
421 483 3.118531 ACCTCCTCAGAGCATGGTTAAT 58.881 45.455 0.00 0.00 38.96 1.40
422 484 4.298626 ACCTCCTCAGAGCATGGTTAATA 58.701 43.478 0.00 0.00 38.96 0.98
423 485 4.346418 ACCTCCTCAGAGCATGGTTAATAG 59.654 45.833 0.00 0.00 38.96 1.73
424 486 4.346418 CCTCCTCAGAGCATGGTTAATAGT 59.654 45.833 0.00 0.00 38.96 2.12
425 487 5.540337 CCTCCTCAGAGCATGGTTAATAGTA 59.460 44.000 0.00 0.00 38.96 1.82
426 488 6.212388 CCTCCTCAGAGCATGGTTAATAGTAT 59.788 42.308 0.00 0.00 38.96 2.12
427 489 7.397476 CCTCCTCAGAGCATGGTTAATAGTATA 59.603 40.741 0.00 0.00 38.96 1.47
428 490 8.354711 TCCTCAGAGCATGGTTAATAGTATAG 57.645 38.462 0.00 0.00 0.00 1.31
429 491 7.038659 CCTCAGAGCATGGTTAATAGTATAGC 58.961 42.308 0.00 0.00 0.00 2.97
430 492 6.936279 TCAGAGCATGGTTAATAGTATAGCC 58.064 40.000 0.00 0.00 0.00 3.93
431 493 6.496911 TCAGAGCATGGTTAATAGTATAGCCA 59.503 38.462 0.00 3.65 39.96 4.75
432 494 6.815641 CAGAGCATGGTTAATAGTATAGCCAG 59.184 42.308 0.00 2.11 39.18 4.85
433 495 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
434 496 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
435 497 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
436 498 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
458 520 3.409026 GGCTATAAGCTAGTGCCATGT 57.591 47.619 12.98 0.00 41.99 3.21
459 521 3.330267 GGCTATAAGCTAGTGCCATGTC 58.670 50.000 12.98 0.00 41.99 3.06
460 522 3.244215 GGCTATAAGCTAGTGCCATGTCA 60.244 47.826 12.98 0.00 41.99 3.58
461 523 4.564406 GGCTATAAGCTAGTGCCATGTCAT 60.564 45.833 12.98 0.00 41.99 3.06
462 524 4.999950 GCTATAAGCTAGTGCCATGTCATT 59.000 41.667 0.00 0.00 38.45 2.57
463 525 5.471456 GCTATAAGCTAGTGCCATGTCATTT 59.529 40.000 0.00 0.00 38.45 2.32
464 526 6.650807 GCTATAAGCTAGTGCCATGTCATTTA 59.349 38.462 0.00 0.00 38.45 1.40
465 527 6.867662 ATAAGCTAGTGCCATGTCATTTAC 57.132 37.500 0.00 0.00 40.80 2.01
466 528 4.220693 AGCTAGTGCCATGTCATTTACA 57.779 40.909 0.00 0.00 40.68 2.41
467 529 4.588899 AGCTAGTGCCATGTCATTTACAA 58.411 39.130 0.00 0.00 40.10 2.41
468 530 4.396166 AGCTAGTGCCATGTCATTTACAAC 59.604 41.667 0.00 0.00 40.10 3.32
469 531 4.438744 GCTAGTGCCATGTCATTTACAACC 60.439 45.833 0.00 0.00 42.70 3.77
470 532 2.825532 AGTGCCATGTCATTTACAACCC 59.174 45.455 0.00 0.00 42.70 4.11
471 533 1.815613 TGCCATGTCATTTACAACCCG 59.184 47.619 0.00 0.00 42.70 5.28
472 534 1.469079 GCCATGTCATTTACAACCCGC 60.469 52.381 0.00 0.00 42.70 6.13
473 535 1.134175 CCATGTCATTTACAACCCGCC 59.866 52.381 0.00 0.00 42.70 6.13
474 536 1.815613 CATGTCATTTACAACCCGCCA 59.184 47.619 0.00 0.00 42.70 5.69
475 537 1.982660 TGTCATTTACAACCCGCCAA 58.017 45.000 0.00 0.00 34.29 4.52
476 538 1.609555 TGTCATTTACAACCCGCCAAC 59.390 47.619 0.00 0.00 34.29 3.77
477 539 1.609555 GTCATTTACAACCCGCCAACA 59.390 47.619 0.00 0.00 0.00 3.33
478 540 2.230266 GTCATTTACAACCCGCCAACAT 59.770 45.455 0.00 0.00 0.00 2.71
479 541 2.230025 TCATTTACAACCCGCCAACATG 59.770 45.455 0.00 0.00 0.00 3.21
480 542 1.693627 TTTACAACCCGCCAACATGT 58.306 45.000 0.00 0.00 0.00 3.21
481 543 2.563261 TTACAACCCGCCAACATGTA 57.437 45.000 0.00 0.00 0.00 2.29
482 544 1.810959 TACAACCCGCCAACATGTAC 58.189 50.000 0.00 0.00 0.00 2.90
483 545 0.179015 ACAACCCGCCAACATGTACA 60.179 50.000 0.00 0.00 0.00 2.90
484 546 0.955178 CAACCCGCCAACATGTACAA 59.045 50.000 0.00 0.00 0.00 2.41
485 547 1.543802 CAACCCGCCAACATGTACAAT 59.456 47.619 0.00 0.00 0.00 2.71
486 548 2.750166 CAACCCGCCAACATGTACAATA 59.250 45.455 0.00 0.00 0.00 1.90
487 549 2.639065 ACCCGCCAACATGTACAATAG 58.361 47.619 0.00 0.00 0.00 1.73
488 550 2.026636 ACCCGCCAACATGTACAATAGT 60.027 45.455 0.00 0.00 0.00 2.12
489 551 3.198200 ACCCGCCAACATGTACAATAGTA 59.802 43.478 0.00 0.00 0.00 1.82
490 552 3.807622 CCCGCCAACATGTACAATAGTAG 59.192 47.826 0.00 0.00 0.00 2.57
491 553 4.442332 CCCGCCAACATGTACAATAGTAGA 60.442 45.833 0.00 0.00 0.00 2.59
492 554 5.297547 CCGCCAACATGTACAATAGTAGAT 58.702 41.667 0.00 0.00 34.81 1.98
493 555 5.405571 CCGCCAACATGTACAATAGTAGATC 59.594 44.000 0.00 0.00 32.38 2.75
494 556 5.983118 CGCCAACATGTACAATAGTAGATCA 59.017 40.000 0.00 0.00 32.38 2.92
495 557 6.478673 CGCCAACATGTACAATAGTAGATCAA 59.521 38.462 0.00 0.00 32.38 2.57
496 558 7.011016 CGCCAACATGTACAATAGTAGATCAAA 59.989 37.037 0.00 0.00 32.38 2.69
497 559 8.673711 GCCAACATGTACAATAGTAGATCAAAA 58.326 33.333 0.00 0.00 32.38 2.44
538 600 9.474313 TTTATTATGTGGCTTACCTTTCATTCT 57.526 29.630 0.00 0.00 36.63 2.40
539 601 7.573968 ATTATGTGGCTTACCTTTCATTCTC 57.426 36.000 0.00 0.00 36.63 2.87
540 602 4.365514 TGTGGCTTACCTTTCATTCTCA 57.634 40.909 0.00 0.00 36.63 3.27
541 603 4.072131 TGTGGCTTACCTTTCATTCTCAC 58.928 43.478 0.00 0.00 36.63 3.51
542 604 4.072131 GTGGCTTACCTTTCATTCTCACA 58.928 43.478 0.00 0.00 36.63 3.58
543 605 4.518970 GTGGCTTACCTTTCATTCTCACAA 59.481 41.667 0.00 0.00 36.63 3.33
544 606 5.009610 GTGGCTTACCTTTCATTCTCACAAA 59.990 40.000 0.00 0.00 36.63 2.83
545 607 5.241506 TGGCTTACCTTTCATTCTCACAAAG 59.758 40.000 0.00 0.00 36.63 2.77
546 608 5.241728 GGCTTACCTTTCATTCTCACAAAGT 59.758 40.000 0.00 0.00 0.00 2.66
547 609 6.145535 GCTTACCTTTCATTCTCACAAAGTG 58.854 40.000 0.00 0.00 34.45 3.16
548 610 4.574599 ACCTTTCATTCTCACAAAGTGC 57.425 40.909 0.00 0.00 32.98 4.40
549 611 3.319122 ACCTTTCATTCTCACAAAGTGCC 59.681 43.478 0.00 0.00 32.98 5.01
550 612 3.571401 CCTTTCATTCTCACAAAGTGCCT 59.429 43.478 0.00 0.00 32.98 4.75
551 613 4.761739 CCTTTCATTCTCACAAAGTGCCTA 59.238 41.667 0.00 0.00 32.98 3.93
552 614 5.106396 CCTTTCATTCTCACAAAGTGCCTAG 60.106 44.000 0.00 0.00 32.98 3.02
553 615 3.942829 TCATTCTCACAAAGTGCCTAGG 58.057 45.455 3.67 3.67 32.98 3.02
554 616 3.582647 TCATTCTCACAAAGTGCCTAGGA 59.417 43.478 14.75 0.00 32.98 2.94
555 617 3.685139 TTCTCACAAAGTGCCTAGGAG 57.315 47.619 14.75 0.00 32.98 3.69
556 618 1.276421 TCTCACAAAGTGCCTAGGAGC 59.724 52.381 14.75 3.68 32.98 4.70
557 619 1.002430 CTCACAAAGTGCCTAGGAGCA 59.998 52.381 14.75 0.22 41.46 4.26
590 652 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
591 653 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
592 654 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
593 655 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
594 656 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
595 657 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
596 658 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
597 659 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
598 660 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
599 661 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
600 662 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
601 663 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
602 664 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
603 665 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
604 666 1.063867 AGCCCGCTTACCTTCTCTCTA 60.064 52.381 0.00 0.00 0.00 2.43
605 667 1.067364 GCCCGCTTACCTTCTCTCTAC 59.933 57.143 0.00 0.00 0.00 2.59
606 668 2.657143 CCCGCTTACCTTCTCTCTACT 58.343 52.381 0.00 0.00 0.00 2.57
607 669 2.619646 CCCGCTTACCTTCTCTCTACTC 59.380 54.545 0.00 0.00 0.00 2.59
608 670 3.547746 CCGCTTACCTTCTCTCTACTCT 58.452 50.000 0.00 0.00 0.00 3.24
609 671 3.949113 CCGCTTACCTTCTCTCTACTCTT 59.051 47.826 0.00 0.00 0.00 2.85
610 672 4.035909 CCGCTTACCTTCTCTCTACTCTTC 59.964 50.000 0.00 0.00 0.00 2.87
611 673 4.879545 CGCTTACCTTCTCTCTACTCTTCT 59.120 45.833 0.00 0.00 0.00 2.85
612 674 5.007332 CGCTTACCTTCTCTCTACTCTTCTC 59.993 48.000 0.00 0.00 0.00 2.87
613 675 6.120220 GCTTACCTTCTCTCTACTCTTCTCT 58.880 44.000 0.00 0.00 0.00 3.10
614 676 6.602009 GCTTACCTTCTCTCTACTCTTCTCTT 59.398 42.308 0.00 0.00 0.00 2.85
615 677 7.122204 GCTTACCTTCTCTCTACTCTTCTCTTT 59.878 40.741 0.00 0.00 0.00 2.52
616 678 8.570068 TTACCTTCTCTCTACTCTTCTCTTTC 57.430 38.462 0.00 0.00 0.00 2.62
617 679 5.949952 ACCTTCTCTCTACTCTTCTCTTTCC 59.050 44.000 0.00 0.00 0.00 3.13
618 680 6.187682 CCTTCTCTCTACTCTTCTCTTTCCT 58.812 44.000 0.00 0.00 0.00 3.36
619 681 6.318900 CCTTCTCTCTACTCTTCTCTTTCCTC 59.681 46.154 0.00 0.00 0.00 3.71
620 682 5.751586 TCTCTCTACTCTTCTCTTTCCTCC 58.248 45.833 0.00 0.00 0.00 4.30
621 683 5.251932 TCTCTCTACTCTTCTCTTTCCTCCA 59.748 44.000 0.00 0.00 0.00 3.86
622 684 5.893500 TCTCTACTCTTCTCTTTCCTCCAA 58.106 41.667 0.00 0.00 0.00 3.53
623 685 5.712917 TCTCTACTCTTCTCTTTCCTCCAAC 59.287 44.000 0.00 0.00 0.00 3.77
624 686 5.646215 TCTACTCTTCTCTTTCCTCCAACT 58.354 41.667 0.00 0.00 0.00 3.16
625 687 6.791371 TCTACTCTTCTCTTTCCTCCAACTA 58.209 40.000 0.00 0.00 0.00 2.24
626 688 7.239438 TCTACTCTTCTCTTTCCTCCAACTAA 58.761 38.462 0.00 0.00 0.00 2.24
627 689 6.353404 ACTCTTCTCTTTCCTCCAACTAAG 57.647 41.667 0.00 0.00 0.00 2.18
628 690 5.153950 TCTTCTCTTTCCTCCAACTAAGC 57.846 43.478 0.00 0.00 0.00 3.09
629 691 4.593206 TCTTCTCTTTCCTCCAACTAAGCA 59.407 41.667 0.00 0.00 0.00 3.91
630 692 4.543590 TCTCTTTCCTCCAACTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
631 693 4.160329 TCTCTTTCCTCCAACTAAGCAGA 58.840 43.478 0.00 0.00 0.00 4.26
632 694 4.593206 TCTCTTTCCTCCAACTAAGCAGAA 59.407 41.667 0.00 0.00 0.00 3.02
633 695 5.071788 TCTCTTTCCTCCAACTAAGCAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
634 696 5.880901 TCTTTCCTCCAACTAAGCAGAAAT 58.119 37.500 0.00 0.00 0.00 2.17
635 697 7.016153 TCTTTCCTCCAACTAAGCAGAAATA 57.984 36.000 0.00 0.00 0.00 1.40
636 698 7.633789 TCTTTCCTCCAACTAAGCAGAAATAT 58.366 34.615 0.00 0.00 0.00 1.28
637 699 8.768397 TCTTTCCTCCAACTAAGCAGAAATATA 58.232 33.333 0.00 0.00 0.00 0.86
638 700 8.732746 TTTCCTCCAACTAAGCAGAAATATAC 57.267 34.615 0.00 0.00 0.00 1.47
639 701 7.676683 TCCTCCAACTAAGCAGAAATATACT 57.323 36.000 0.00 0.00 0.00 2.12
640 702 8.777578 TCCTCCAACTAAGCAGAAATATACTA 57.222 34.615 0.00 0.00 0.00 1.82
641 703 9.209048 TCCTCCAACTAAGCAGAAATATACTAA 57.791 33.333 0.00 0.00 0.00 2.24
662 724 8.442632 ACTAATTTATTCCTTTAGCCCGTTAC 57.557 34.615 0.00 0.00 0.00 2.50
663 725 8.270030 ACTAATTTATTCCTTTAGCCCGTTACT 58.730 33.333 0.00 0.00 0.00 2.24
664 726 7.563888 AATTTATTCCTTTAGCCCGTTACTC 57.436 36.000 0.00 0.00 0.00 2.59
665 727 5.680594 TTATTCCTTTAGCCCGTTACTCA 57.319 39.130 0.00 0.00 0.00 3.41
666 728 3.604875 TTCCTTTAGCCCGTTACTCAG 57.395 47.619 0.00 0.00 0.00 3.35
667 729 1.206371 TCCTTTAGCCCGTTACTCAGC 59.794 52.381 0.00 0.00 0.00 4.26
668 730 1.207329 CCTTTAGCCCGTTACTCAGCT 59.793 52.381 0.00 0.00 39.37 4.24
669 731 2.541556 CTTTAGCCCGTTACTCAGCTC 58.458 52.381 0.00 0.00 36.79 4.09
670 732 1.848652 TTAGCCCGTTACTCAGCTCT 58.151 50.000 0.00 0.00 36.79 4.09
671 733 2.723322 TAGCCCGTTACTCAGCTCTA 57.277 50.000 0.00 0.00 36.79 2.43
672 734 1.104630 AGCCCGTTACTCAGCTCTAC 58.895 55.000 0.00 0.00 0.00 2.59
673 735 1.104630 GCCCGTTACTCAGCTCTACT 58.895 55.000 0.00 0.00 0.00 2.57
686 748 4.560128 CAGCTCTACTGTACTTGCTTTCA 58.440 43.478 0.00 0.00 41.86 2.69
705 767 3.776659 TTCGTGCTCGTTCGGTGCA 62.777 57.895 8.17 8.86 42.44 4.57
706 768 3.767230 CGTGCTCGTTCGGTGCAG 61.767 66.667 11.95 5.65 45.00 4.41
771 834 1.958902 GCCTCTGCTCCCTCTCTGTG 61.959 65.000 0.00 0.00 33.53 3.66
772 835 1.516892 CTCTGCTCCCTCTCTGTGC 59.483 63.158 0.00 0.00 0.00 4.57
773 836 2.183811 CTGCTCCCTCTCTGTGCG 59.816 66.667 0.00 0.00 0.00 5.34
774 837 4.074526 TGCTCCCTCTCTGTGCGC 62.075 66.667 0.00 0.00 0.00 6.09
775 838 4.828925 GCTCCCTCTCTGTGCGCC 62.829 72.222 4.18 0.00 0.00 6.53
776 839 4.154347 CTCCCTCTCTGTGCGCCC 62.154 72.222 4.18 0.00 0.00 6.13
777 840 4.704103 TCCCTCTCTGTGCGCCCT 62.704 66.667 4.18 0.00 0.00 5.19
778 841 4.463879 CCCTCTCTGTGCGCCCTG 62.464 72.222 4.18 0.00 0.00 4.45
847 910 0.981277 TTGTAGCCCAGGCCTAGGTC 60.981 60.000 19.24 4.79 43.17 3.85
856 919 1.053424 AGGCCTAGGTCACGAAACAA 58.947 50.000 17.52 0.00 0.00 2.83
861 924 2.476821 CTAGGTCACGAAACAAACGGT 58.523 47.619 0.00 0.00 34.93 4.83
1091 1161 0.394899 GGCAACATCAAGGGGAGGAG 60.395 60.000 0.00 0.00 0.00 3.69
1265 1335 1.084289 GACGCCATCCACAAGGTAAC 58.916 55.000 0.00 0.00 35.89 2.50
1266 1336 0.672401 ACGCCATCCACAAGGTAACG 60.672 55.000 0.00 0.00 46.39 3.18
1498 1583 1.808411 ATGTGCCACTTACCTCGTTG 58.192 50.000 0.00 0.00 0.00 4.10
1542 1627 3.181526 CGCAGCATTCTCTAGTCAACAAC 60.182 47.826 0.00 0.00 0.00 3.32
1580 1665 2.884639 AGGTTGGACACATAAACTGCAC 59.115 45.455 0.00 0.00 0.00 4.57
1758 1846 3.537580 GGTGTGTGTCCAAGAGTTTGTA 58.462 45.455 0.00 0.00 32.21 2.41
1856 1944 1.400846 GACGAGGATTCTCACACGCTA 59.599 52.381 0.96 0.00 39.95 4.26
1880 1968 9.692749 CTATTGGGAAATGATGATTTCAATGAG 57.307 33.333 17.71 5.91 46.52 2.90
1938 2062 6.934083 AGGTGTGTTTTAAGCCCATATTTTTG 59.066 34.615 0.00 0.00 0.00 2.44
1944 2069 7.500559 TGTTTTAAGCCCATATTTTTGTGCTTT 59.499 29.630 0.00 0.00 39.53 3.51
1982 2107 8.990163 TGAGTCTCCTGTGTTATGTATGTATA 57.010 34.615 0.00 0.00 0.00 1.47
2121 2247 1.255882 AATTTTGTCGATGGCCTGCA 58.744 45.000 3.32 0.00 0.00 4.41
2150 2276 6.455360 AATCTTTTGAAGTTCTGCTTGTCA 57.545 33.333 4.17 0.00 37.59 3.58
2275 2401 0.177604 TGGCCTGCAAAACAAACCTG 59.822 50.000 3.32 0.00 0.00 4.00
2366 2492 6.981762 TGCTCTGAGAGATTCTGAAATTTC 57.018 37.500 14.78 11.41 33.93 2.17
2425 2551 3.763897 GGCTCATACAGGTGTTGGAATTT 59.236 43.478 0.00 0.00 0.00 1.82
2428 2554 5.414454 GCTCATACAGGTGTTGGAATTTGTA 59.586 40.000 0.00 0.00 0.00 2.41
2502 2734 5.545723 ACAATTGGAATCCAAAACATGGGTA 59.454 36.000 19.57 0.00 43.84 3.69
2513 2745 5.245977 CCAAAACATGGGTAGGAATTTGACT 59.754 40.000 0.00 0.00 46.27 3.41
2514 2746 6.239572 CCAAAACATGGGTAGGAATTTGACTT 60.240 38.462 0.00 0.00 46.27 3.01
2547 2782 2.250921 TAATCTGGGACGGGGTTGTA 57.749 50.000 0.00 0.00 33.92 2.41
2563 2798 5.048294 GGGGTTGTACCAAGTAAAACTGATG 60.048 44.000 7.54 0.00 41.02 3.07
3034 3418 7.416438 GCTGTGTGCTTAATCTAGTTACTCCTA 60.416 40.741 0.00 0.00 38.95 2.94
3152 6055 2.387757 TCCTTCTGTTGCTGCCTTTTT 58.612 42.857 0.00 0.00 0.00 1.94
3220 6125 9.925268 TCTGAAACTTAAATAAACTGTTTCGAC 57.075 29.630 9.38 0.00 45.25 4.20
3401 6544 2.159627 CCAAGTGTTTATCAGTGCGGTC 59.840 50.000 0.00 0.00 0.00 4.79
3670 6820 7.771183 TGTTATTATGCATTCTTCTGTTTCCC 58.229 34.615 3.54 0.00 0.00 3.97
3693 6843 7.017551 TCCCTATTTGTAGCATGAAGTGGATAT 59.982 37.037 0.00 0.00 0.00 1.63
3997 7147 5.536554 ACATAGCTTTCAGTCGACAATTG 57.463 39.130 19.50 7.68 0.00 2.32
4064 7216 3.345808 CACCCCGAACACTGCACG 61.346 66.667 0.00 0.00 0.00 5.34
4106 7258 7.962995 AGAGAAAATAGTAGACTGGACATGA 57.037 36.000 0.00 0.00 0.00 3.07
4135 7287 8.177013 GCCCATTAGTTGATTTGCTTTAAATTG 58.823 33.333 0.00 0.00 39.06 2.32
4153 7305 5.705609 AATTGTGTGGACCAGTTTATGTC 57.294 39.130 0.00 0.00 0.00 3.06
4163 7315 8.138712 GTGGACCAGTTTATGTCTCTATTCTAG 58.861 40.741 0.00 0.00 0.00 2.43
4225 7378 4.080526 GGTACCTTGGGATGAAGTGTGTAT 60.081 45.833 4.06 0.00 0.00 2.29
4226 7379 4.657814 ACCTTGGGATGAAGTGTGTATT 57.342 40.909 0.00 0.00 0.00 1.89
4256 7420 5.698832 TGTCCACTTCTAATTTCGCAAATG 58.301 37.500 0.00 0.00 0.00 2.32
4307 7500 3.325425 TGTTATCTTTGTCAGTTCCCGGA 59.675 43.478 0.73 0.00 0.00 5.14
5406 8624 8.303876 TCCTCAAATATTTTGCAGGTTTTCTAC 58.696 33.333 13.68 0.00 0.00 2.59
5424 8642 0.317479 ACGGTGTTCTCCTGCAGTAC 59.683 55.000 13.81 5.82 0.00 2.73
5451 8669 4.416620 CAGTTTTAGCTACTCAGAGTCCG 58.583 47.826 6.27 0.66 0.00 4.79
5666 8884 5.132648 TCTGCCATCCTTATTATGTGGTCTT 59.867 40.000 0.00 0.00 32.56 3.01
5732 8950 3.108376 ACTTCTCCTGAGGTTATGGTCC 58.892 50.000 0.00 0.00 0.00 4.46
5813 9031 2.733552 GTGCGAATATCTGATGCGATGT 59.266 45.455 0.00 0.00 0.00 3.06
5971 9189 8.150945 TCCAGAGACCTAATTAGCATGAATAAC 58.849 37.037 6.99 0.00 0.00 1.89
6016 9234 6.008960 AGCTGAATTTCTTCTGTTCCTTCAT 58.991 36.000 0.00 0.00 33.99 2.57
6294 9823 4.935885 CAGTTTATGGAGCTCAAGACAC 57.064 45.455 17.19 4.82 0.00 3.67
6433 9962 3.810743 GCACCTGGTTTTAGTGGACTCAT 60.811 47.826 0.00 0.00 32.05 2.90
6585 10115 3.128415 GGCTCTGCTCTTTTCCAGAAATC 59.872 47.826 0.00 0.00 37.61 2.17
6689 10219 8.253810 AGATGTCATCGACTTGATTAAGAAGAA 58.746 33.333 3.94 0.00 37.36 2.52
6720 10250 0.392193 ACCATGCTTCAAGAGAGCCG 60.392 55.000 0.00 0.00 0.00 5.52
6807 10337 7.201145 AGTATGTATACTTGTCATTCCGTGTC 58.799 38.462 4.17 0.00 40.54 3.67
6814 10344 1.374125 TCATTCCGTGTCGCCAGTG 60.374 57.895 0.00 0.00 0.00 3.66
6840 10370 4.009675 TGTCTCTGTTGTGCTCTGTTTTT 58.990 39.130 0.00 0.00 0.00 1.94
7235 10766 3.132289 CGCTGGGTAGTGGAGATAGAAAA 59.868 47.826 0.00 0.00 0.00 2.29
7289 10820 2.479837 GTTTTAACTGCCTTTGCCACC 58.520 47.619 0.00 0.00 36.33 4.61
7394 10926 0.250209 AGTTGCTCCAGAGTGCTGTG 60.250 55.000 0.00 0.00 40.63 3.66
7401 10933 1.300465 CAGAGTGCTGTGCTCGTGT 60.300 57.895 0.00 0.00 37.99 4.49
7424 10956 9.843334 GTGTAATAGTAGTAATCTGATGTAGCC 57.157 37.037 0.00 0.00 0.00 3.93
7430 10962 4.298626 AGTAATCTGATGTAGCCCAGGAA 58.701 43.478 0.00 0.00 0.00 3.36
7431 10963 4.910304 AGTAATCTGATGTAGCCCAGGAAT 59.090 41.667 0.00 0.00 0.00 3.01
7440 10972 1.106285 AGCCCAGGAATCGATTTTGC 58.894 50.000 12.81 10.47 0.00 3.68
7471 11003 4.944962 TTGTCCTGATTTCTTGTATGCG 57.055 40.909 0.00 0.00 0.00 4.73
7472 11004 2.677836 TGTCCTGATTTCTTGTATGCGC 59.322 45.455 0.00 0.00 0.00 6.09
7505 11037 3.857052 TCAGATGTATCCGAACCAACAC 58.143 45.455 0.00 0.00 0.00 3.32
7506 11038 3.259625 TCAGATGTATCCGAACCAACACA 59.740 43.478 0.00 0.00 0.00 3.72
7578 11110 6.924111 ACACTGGAATTTAATCATTGGTGAC 58.076 36.000 0.00 0.00 37.14 3.67
7651 11187 1.754226 CTCTCTCTGAACCCTGTAGCC 59.246 57.143 0.00 0.00 0.00 3.93
7687 11223 0.538287 AGAAGCTCTGTTTGCCACCC 60.538 55.000 0.00 0.00 0.00 4.61
7707 11243 5.471456 CACCCTGCAAATTACATCTCCTATC 59.529 44.000 0.00 0.00 0.00 2.08
7718 11254 2.509052 TCTCCTATCGCATTTGGTCG 57.491 50.000 0.00 0.00 0.00 4.79
7728 11264 2.000447 GCATTTGGTCGTCTCCTGTAC 59.000 52.381 0.00 0.00 0.00 2.90
7729 11265 2.618053 CATTTGGTCGTCTCCTGTACC 58.382 52.381 0.00 0.00 0.00 3.34
7730 11266 1.707106 TTTGGTCGTCTCCTGTACCA 58.293 50.000 0.00 0.00 40.19 3.25
7731 11267 1.254026 TTGGTCGTCTCCTGTACCAG 58.746 55.000 0.00 0.00 42.66 4.00
7732 11268 0.402887 TGGTCGTCTCCTGTACCAGA 59.597 55.000 0.00 0.00 37.09 3.86
7733 11269 1.202964 TGGTCGTCTCCTGTACCAGAA 60.203 52.381 0.00 0.00 37.09 3.02
7734 11270 1.473278 GGTCGTCTCCTGTACCAGAAG 59.527 57.143 0.00 0.00 32.44 2.85
7735 11271 2.161030 GTCGTCTCCTGTACCAGAAGT 58.839 52.381 0.00 0.00 32.44 3.01
7736 11272 2.557490 GTCGTCTCCTGTACCAGAAGTT 59.443 50.000 0.00 0.00 32.44 2.66
7737 11273 3.005578 GTCGTCTCCTGTACCAGAAGTTT 59.994 47.826 0.00 0.00 32.44 2.66
7738 11274 3.005472 TCGTCTCCTGTACCAGAAGTTTG 59.995 47.826 0.00 0.00 32.44 2.93
7739 11275 3.665190 GTCTCCTGTACCAGAAGTTTGG 58.335 50.000 0.00 3.42 44.09 3.28
7811 11350 2.738521 ACTAAGCCTGTGCGTGCG 60.739 61.111 0.00 0.00 44.33 5.34
7852 11391 2.887152 ACCAAACTCCTCTGCAAATCAC 59.113 45.455 0.00 0.00 0.00 3.06
7904 11443 3.079578 CAATGCCTTGAGCTCTTCTGAA 58.920 45.455 16.19 0.00 44.23 3.02
8048 11587 4.404654 GACGGCCCAAAAGCAGCG 62.405 66.667 0.00 0.00 0.00 5.18
8092 11631 9.596308 AAAGGTAAATAAACATCCCAAACTACT 57.404 29.630 0.00 0.00 0.00 2.57
8118 11657 1.006832 CATTGCGTGCTACCACTACC 58.993 55.000 0.00 0.00 39.86 3.18
8121 11660 1.476477 TGCGTGCTACCACTACCATA 58.524 50.000 0.00 0.00 39.86 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.540707 TGCATCTGCGCTGATGAAAAA 59.459 42.857 43.10 28.22 44.71 1.94
64 65 1.131693 CTGCATCTGCGCTGATGAAAA 59.868 47.619 43.10 30.52 44.71 2.29
65 66 0.730840 CTGCATCTGCGCTGATGAAA 59.269 50.000 43.10 32.37 44.71 2.69
66 67 0.108041 TCTGCATCTGCGCTGATGAA 60.108 50.000 43.10 36.71 44.71 2.57
67 68 0.106149 ATCTGCATCTGCGCTGATGA 59.894 50.000 43.10 30.75 45.47 2.92
68 69 2.618165 ATCTGCATCTGCGCTGATG 58.382 52.632 38.10 38.10 45.47 3.07
70 71 0.108041 TTCATCTGCATCTGCGCTGA 60.108 50.000 19.70 19.70 45.83 4.26
71 72 0.027716 GTTCATCTGCATCTGCGCTG 59.972 55.000 9.73 8.88 45.83 5.18
72 73 0.107800 AGTTCATCTGCATCTGCGCT 60.108 50.000 9.73 0.00 45.83 5.92
73 74 0.304098 GAGTTCATCTGCATCTGCGC 59.696 55.000 0.00 0.00 45.83 6.09
74 75 0.575859 CGAGTTCATCTGCATCTGCG 59.424 55.000 0.00 0.00 45.83 5.18
75 76 0.935898 CCGAGTTCATCTGCATCTGC 59.064 55.000 0.00 0.00 42.50 4.26
76 77 2.591571 TCCGAGTTCATCTGCATCTG 57.408 50.000 0.00 0.00 0.00 2.90
77 78 2.806019 GCATCCGAGTTCATCTGCATCT 60.806 50.000 0.00 0.00 29.37 2.90
78 79 1.530293 GCATCCGAGTTCATCTGCATC 59.470 52.381 0.00 0.00 29.37 3.91
79 80 1.134310 TGCATCCGAGTTCATCTGCAT 60.134 47.619 0.00 0.00 33.17 3.96
80 81 0.249955 TGCATCCGAGTTCATCTGCA 59.750 50.000 0.00 0.00 35.06 4.41
81 82 1.590932 ATGCATCCGAGTTCATCTGC 58.409 50.000 0.00 0.00 0.00 4.26
82 83 4.248691 TCTATGCATCCGAGTTCATCTG 57.751 45.455 0.19 0.00 0.00 2.90
83 84 4.322574 CCATCTATGCATCCGAGTTCATCT 60.323 45.833 0.19 0.00 0.00 2.90
84 85 3.931468 CCATCTATGCATCCGAGTTCATC 59.069 47.826 0.19 0.00 0.00 2.92
85 86 3.580022 TCCATCTATGCATCCGAGTTCAT 59.420 43.478 0.19 0.00 0.00 2.57
86 87 2.965147 TCCATCTATGCATCCGAGTTCA 59.035 45.455 0.19 0.00 0.00 3.18
87 88 3.667497 TCCATCTATGCATCCGAGTTC 57.333 47.619 0.19 0.00 0.00 3.01
88 89 4.630644 AATCCATCTATGCATCCGAGTT 57.369 40.909 0.19 0.00 0.00 3.01
89 90 4.630644 AAATCCATCTATGCATCCGAGT 57.369 40.909 0.19 0.00 0.00 4.18
90 91 4.092529 CGAAAATCCATCTATGCATCCGAG 59.907 45.833 0.19 0.00 0.00 4.63
91 92 3.996363 CGAAAATCCATCTATGCATCCGA 59.004 43.478 0.19 1.08 0.00 4.55
92 93 3.425359 GCGAAAATCCATCTATGCATCCG 60.425 47.826 0.19 0.00 0.00 4.18
93 94 3.755378 AGCGAAAATCCATCTATGCATCC 59.245 43.478 0.19 0.00 0.00 3.51
94 95 6.538021 AGATAGCGAAAATCCATCTATGCATC 59.462 38.462 0.19 0.00 0.00 3.91
95 96 6.413052 AGATAGCGAAAATCCATCTATGCAT 58.587 36.000 3.79 3.79 0.00 3.96
96 97 5.798132 AGATAGCGAAAATCCATCTATGCA 58.202 37.500 0.00 0.00 0.00 3.96
97 98 6.402983 CCAAGATAGCGAAAATCCATCTATGC 60.403 42.308 0.00 0.00 0.00 3.14
98 99 6.652481 ACCAAGATAGCGAAAATCCATCTATG 59.348 38.462 0.00 0.00 0.00 2.23
99 100 6.773638 ACCAAGATAGCGAAAATCCATCTAT 58.226 36.000 0.00 0.00 0.00 1.98
100 101 6.174720 ACCAAGATAGCGAAAATCCATCTA 57.825 37.500 0.00 0.00 0.00 1.98
101 102 5.041191 ACCAAGATAGCGAAAATCCATCT 57.959 39.130 0.00 0.00 0.00 2.90
102 103 4.214332 GGACCAAGATAGCGAAAATCCATC 59.786 45.833 0.00 0.00 0.00 3.51
103 104 4.137543 GGACCAAGATAGCGAAAATCCAT 58.862 43.478 0.00 0.00 0.00 3.41
104 105 3.541632 GGACCAAGATAGCGAAAATCCA 58.458 45.455 0.00 0.00 0.00 3.41
105 106 2.879026 GGGACCAAGATAGCGAAAATCC 59.121 50.000 0.00 0.00 0.00 3.01
106 107 3.809905 AGGGACCAAGATAGCGAAAATC 58.190 45.455 0.00 0.00 0.00 2.17
107 108 3.933861 AGGGACCAAGATAGCGAAAAT 57.066 42.857 0.00 0.00 0.00 1.82
108 109 3.713826 AAGGGACCAAGATAGCGAAAA 57.286 42.857 0.00 0.00 0.00 2.29
109 110 3.263425 AGAAAGGGACCAAGATAGCGAAA 59.737 43.478 0.00 0.00 0.00 3.46
110 111 2.838202 AGAAAGGGACCAAGATAGCGAA 59.162 45.455 0.00 0.00 0.00 4.70
111 112 2.467880 AGAAAGGGACCAAGATAGCGA 58.532 47.619 0.00 0.00 0.00 4.93
112 113 2.990066 AGAAAGGGACCAAGATAGCG 57.010 50.000 0.00 0.00 0.00 4.26
113 114 4.222124 TGAAGAAAGGGACCAAGATAGC 57.778 45.455 0.00 0.00 0.00 2.97
114 115 6.657875 AGATTGAAGAAAGGGACCAAGATAG 58.342 40.000 0.00 0.00 0.00 2.08
115 116 6.642733 AGATTGAAGAAAGGGACCAAGATA 57.357 37.500 0.00 0.00 0.00 1.98
116 117 5.527026 AGATTGAAGAAAGGGACCAAGAT 57.473 39.130 0.00 0.00 0.00 2.40
117 118 5.073691 AGAAGATTGAAGAAAGGGACCAAGA 59.926 40.000 0.00 0.00 0.00 3.02
118 119 5.182760 CAGAAGATTGAAGAAAGGGACCAAG 59.817 44.000 0.00 0.00 0.00 3.61
119 120 5.072741 CAGAAGATTGAAGAAAGGGACCAA 58.927 41.667 0.00 0.00 0.00 3.67
120 121 4.104738 ACAGAAGATTGAAGAAAGGGACCA 59.895 41.667 0.00 0.00 0.00 4.02
121 122 4.657013 ACAGAAGATTGAAGAAAGGGACC 58.343 43.478 0.00 0.00 0.00 4.46
122 123 6.641169 AAACAGAAGATTGAAGAAAGGGAC 57.359 37.500 0.00 0.00 0.00 4.46
123 124 8.940397 ATTAAACAGAAGATTGAAGAAAGGGA 57.060 30.769 0.00 0.00 0.00 4.20
124 125 9.415544 CAATTAAACAGAAGATTGAAGAAAGGG 57.584 33.333 0.00 0.00 32.61 3.95
164 170 4.183101 CTGATGGACTCTCTTCTTCTTGC 58.817 47.826 0.00 0.00 0.00 4.01
172 178 2.533916 TGCTGACTGATGGACTCTCTT 58.466 47.619 0.00 0.00 0.00 2.85
177 183 3.243670 CGATGTATGCTGACTGATGGACT 60.244 47.826 0.00 0.00 0.00 3.85
187 193 0.104855 GCTGGACCGATGTATGCTGA 59.895 55.000 0.00 0.00 0.00 4.26
197 203 2.231478 CTGAGAAGTTTAGCTGGACCGA 59.769 50.000 0.00 0.00 0.00 4.69
199 205 2.303311 ACCTGAGAAGTTTAGCTGGACC 59.697 50.000 0.00 0.00 0.00 4.46
200 206 3.686916 ACCTGAGAAGTTTAGCTGGAC 57.313 47.619 0.00 0.00 0.00 4.02
201 207 3.244561 CCAACCTGAGAAGTTTAGCTGGA 60.245 47.826 0.00 0.00 0.00 3.86
224 230 2.122054 TTAACGGGGGTGGGTGGA 60.122 61.111 0.00 0.00 0.00 4.02
226 232 2.034532 GGTTAACGGGGGTGGGTG 59.965 66.667 0.00 0.00 0.00 4.61
228 234 0.989747 ATAGGGTTAACGGGGGTGGG 60.990 60.000 0.00 0.00 0.00 4.61
238 244 2.972713 CTCCTGGCTGCTATAGGGTTAA 59.027 50.000 14.73 0.19 32.39 2.01
241 247 0.563173 TCTCCTGGCTGCTATAGGGT 59.437 55.000 14.73 0.00 32.39 4.34
268 279 0.626382 AGACGAGAGAGGGGATGTGA 59.374 55.000 0.00 0.00 0.00 3.58
349 370 4.020617 TGAGGCAAGGGAGGCACG 62.021 66.667 0.00 0.00 36.37 5.34
350 371 2.360475 GTGAGGCAAGGGAGGCAC 60.360 66.667 0.00 0.00 36.37 5.01
351 372 4.020617 CGTGAGGCAAGGGAGGCA 62.021 66.667 0.00 0.00 36.37 4.75
408 470 6.575254 GCTGGCTATACTATTAACCATGCTCT 60.575 42.308 0.00 0.00 0.00 4.09
409 471 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
410 472 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
411 473 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
412 474 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
413 475 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
414 476 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
431 493 5.671815 GCACTAGCTTATAGCCAGCAGCT 62.672 52.174 6.50 6.50 46.67 4.24
432 494 2.411904 CACTAGCTTATAGCCAGCAGC 58.588 52.381 0.00 0.00 43.77 5.25
433 495 2.411904 GCACTAGCTTATAGCCAGCAG 58.588 52.381 0.00 0.00 43.77 4.24
434 496 1.070758 GGCACTAGCTTATAGCCAGCA 59.929 52.381 12.52 0.00 43.77 4.41
435 497 1.802069 GGCACTAGCTTATAGCCAGC 58.198 55.000 12.52 1.48 43.77 4.85
438 500 3.244215 TGACATGGCACTAGCTTATAGCC 60.244 47.826 0.00 11.00 43.77 3.93
439 501 3.995199 TGACATGGCACTAGCTTATAGC 58.005 45.455 0.00 0.00 42.84 2.97
440 502 7.657354 TGTAAATGACATGGCACTAGCTTATAG 59.343 37.037 1.45 0.00 35.22 1.31
441 503 7.505258 TGTAAATGACATGGCACTAGCTTATA 58.495 34.615 1.45 0.00 35.22 0.98
442 504 6.356556 TGTAAATGACATGGCACTAGCTTAT 58.643 36.000 1.45 0.00 35.22 1.73
443 505 5.739959 TGTAAATGACATGGCACTAGCTTA 58.260 37.500 1.45 0.00 35.22 3.09
444 506 4.588899 TGTAAATGACATGGCACTAGCTT 58.411 39.130 1.45 0.00 35.22 3.74
445 507 4.220693 TGTAAATGACATGGCACTAGCT 57.779 40.909 1.45 0.00 35.22 3.32
446 508 4.438744 GGTTGTAAATGACATGGCACTAGC 60.439 45.833 1.45 0.00 38.07 3.42
447 509 4.096382 GGGTTGTAAATGACATGGCACTAG 59.904 45.833 1.45 0.00 38.07 2.57
448 510 4.013728 GGGTTGTAAATGACATGGCACTA 58.986 43.478 1.45 0.00 38.07 2.74
449 511 2.825532 GGGTTGTAAATGACATGGCACT 59.174 45.455 1.45 0.00 38.07 4.40
450 512 2.415357 CGGGTTGTAAATGACATGGCAC 60.415 50.000 1.45 0.00 38.07 5.01
451 513 1.815613 CGGGTTGTAAATGACATGGCA 59.184 47.619 2.18 2.18 38.07 4.92
452 514 1.469079 GCGGGTTGTAAATGACATGGC 60.469 52.381 0.00 0.00 38.07 4.40
453 515 1.134175 GGCGGGTTGTAAATGACATGG 59.866 52.381 0.00 0.00 38.07 3.66
454 516 1.815613 TGGCGGGTTGTAAATGACATG 59.184 47.619 0.00 0.00 38.07 3.21
455 517 2.208132 TGGCGGGTTGTAAATGACAT 57.792 45.000 0.00 0.00 38.07 3.06
456 518 1.609555 GTTGGCGGGTTGTAAATGACA 59.390 47.619 0.00 0.00 35.78 3.58
457 519 1.609555 TGTTGGCGGGTTGTAAATGAC 59.390 47.619 0.00 0.00 0.00 3.06
458 520 1.982660 TGTTGGCGGGTTGTAAATGA 58.017 45.000 0.00 0.00 0.00 2.57
459 521 2.029470 ACATGTTGGCGGGTTGTAAATG 60.029 45.455 0.00 0.00 0.00 2.32
460 522 2.243810 ACATGTTGGCGGGTTGTAAAT 58.756 42.857 0.00 0.00 0.00 1.40
461 523 1.693627 ACATGTTGGCGGGTTGTAAA 58.306 45.000 0.00 0.00 0.00 2.01
462 524 2.152830 GTACATGTTGGCGGGTTGTAA 58.847 47.619 2.30 0.00 0.00 2.41
463 525 1.071857 TGTACATGTTGGCGGGTTGTA 59.928 47.619 2.30 0.00 0.00 2.41
464 526 0.179015 TGTACATGTTGGCGGGTTGT 60.179 50.000 2.30 0.00 0.00 3.32
465 527 0.955178 TTGTACATGTTGGCGGGTTG 59.045 50.000 2.30 0.00 0.00 3.77
466 528 1.917872 ATTGTACATGTTGGCGGGTT 58.082 45.000 2.30 0.00 0.00 4.11
467 529 2.026636 ACTATTGTACATGTTGGCGGGT 60.027 45.455 2.30 0.00 0.00 5.28
468 530 2.639065 ACTATTGTACATGTTGGCGGG 58.361 47.619 2.30 0.00 0.00 6.13
469 531 4.689071 TCTACTATTGTACATGTTGGCGG 58.311 43.478 2.30 0.00 0.00 6.13
470 532 5.983118 TGATCTACTATTGTACATGTTGGCG 59.017 40.000 2.30 0.00 0.00 5.69
471 533 7.786178 TTGATCTACTATTGTACATGTTGGC 57.214 36.000 2.30 0.00 0.00 4.52
512 574 9.474313 AGAATGAAAGGTAAGCCACATAATAAA 57.526 29.630 0.00 0.00 37.19 1.40
513 575 9.120538 GAGAATGAAAGGTAAGCCACATAATAA 57.879 33.333 0.00 0.00 37.19 1.40
514 576 8.271458 TGAGAATGAAAGGTAAGCCACATAATA 58.729 33.333 0.00 0.00 37.19 0.98
515 577 7.067494 GTGAGAATGAAAGGTAAGCCACATAAT 59.933 37.037 0.00 0.00 37.19 1.28
516 578 6.374333 GTGAGAATGAAAGGTAAGCCACATAA 59.626 38.462 0.00 0.00 37.19 1.90
517 579 5.880332 GTGAGAATGAAAGGTAAGCCACATA 59.120 40.000 0.00 0.00 37.19 2.29
518 580 4.702131 GTGAGAATGAAAGGTAAGCCACAT 59.298 41.667 0.00 0.00 37.19 3.21
519 581 4.072131 GTGAGAATGAAAGGTAAGCCACA 58.928 43.478 0.00 0.00 37.19 4.17
520 582 4.072131 TGTGAGAATGAAAGGTAAGCCAC 58.928 43.478 0.00 0.00 37.19 5.01
521 583 4.365514 TGTGAGAATGAAAGGTAAGCCA 57.634 40.909 0.00 0.00 37.19 4.75
522 584 5.241728 ACTTTGTGAGAATGAAAGGTAAGCC 59.758 40.000 0.00 0.00 0.00 4.35
523 585 6.145535 CACTTTGTGAGAATGAAAGGTAAGC 58.854 40.000 0.00 0.00 35.23 3.09
524 586 6.145535 GCACTTTGTGAGAATGAAAGGTAAG 58.854 40.000 1.52 0.00 35.23 2.34
525 587 5.009610 GGCACTTTGTGAGAATGAAAGGTAA 59.990 40.000 1.52 0.00 35.23 2.85
526 588 4.518970 GGCACTTTGTGAGAATGAAAGGTA 59.481 41.667 1.52 0.00 35.23 3.08
527 589 3.319122 GGCACTTTGTGAGAATGAAAGGT 59.681 43.478 1.52 0.00 35.23 3.50
528 590 3.571401 AGGCACTTTGTGAGAATGAAAGG 59.429 43.478 1.52 0.00 35.23 3.11
529 591 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
530 592 4.761739 CCTAGGCACTTTGTGAGAATGAAA 59.238 41.667 0.00 0.00 41.75 2.69
531 593 4.041567 TCCTAGGCACTTTGTGAGAATGAA 59.958 41.667 2.96 0.00 41.75 2.57
532 594 3.582647 TCCTAGGCACTTTGTGAGAATGA 59.417 43.478 2.96 0.00 41.75 2.57
533 595 3.937706 CTCCTAGGCACTTTGTGAGAATG 59.062 47.826 2.96 0.00 41.75 2.67
534 596 3.620966 GCTCCTAGGCACTTTGTGAGAAT 60.621 47.826 2.96 0.00 41.75 2.40
535 597 2.289694 GCTCCTAGGCACTTTGTGAGAA 60.290 50.000 2.96 0.00 41.75 2.87
536 598 1.276421 GCTCCTAGGCACTTTGTGAGA 59.724 52.381 2.96 0.00 41.75 3.27
537 599 1.002430 TGCTCCTAGGCACTTTGTGAG 59.998 52.381 2.96 0.00 41.75 3.51
538 600 1.055849 TGCTCCTAGGCACTTTGTGA 58.944 50.000 2.96 0.00 41.75 3.58
539 601 3.631453 TGCTCCTAGGCACTTTGTG 57.369 52.632 2.96 0.00 41.75 3.33
573 635 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
574 636 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
575 637 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
576 638 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
577 639 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
578 640 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
579 641 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
580 642 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
581 643 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
582 644 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
583 645 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
584 646 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
585 647 1.067364 GTAGAGAGAAGGTAAGCGGGC 59.933 57.143 0.00 0.00 0.00 6.13
586 648 2.619646 GAGTAGAGAGAAGGTAAGCGGG 59.380 54.545 0.00 0.00 0.00 6.13
587 649 3.547746 AGAGTAGAGAGAAGGTAAGCGG 58.452 50.000 0.00 0.00 0.00 5.52
588 650 4.879545 AGAAGAGTAGAGAGAAGGTAAGCG 59.120 45.833 0.00 0.00 0.00 4.68
589 651 6.120220 AGAGAAGAGTAGAGAGAAGGTAAGC 58.880 44.000 0.00 0.00 0.00 3.09
590 652 8.575649 AAAGAGAAGAGTAGAGAGAAGGTAAG 57.424 38.462 0.00 0.00 0.00 2.34
591 653 7.612633 GGAAAGAGAAGAGTAGAGAGAAGGTAA 59.387 40.741 0.00 0.00 0.00 2.85
592 654 7.037153 AGGAAAGAGAAGAGTAGAGAGAAGGTA 60.037 40.741 0.00 0.00 0.00 3.08
593 655 5.949952 GGAAAGAGAAGAGTAGAGAGAAGGT 59.050 44.000 0.00 0.00 0.00 3.50
594 656 6.187682 AGGAAAGAGAAGAGTAGAGAGAAGG 58.812 44.000 0.00 0.00 0.00 3.46
595 657 6.318900 GGAGGAAAGAGAAGAGTAGAGAGAAG 59.681 46.154 0.00 0.00 0.00 2.85
596 658 6.184789 GGAGGAAAGAGAAGAGTAGAGAGAA 58.815 44.000 0.00 0.00 0.00 2.87
597 659 5.251932 TGGAGGAAAGAGAAGAGTAGAGAGA 59.748 44.000 0.00 0.00 0.00 3.10
598 660 5.505780 TGGAGGAAAGAGAAGAGTAGAGAG 58.494 45.833 0.00 0.00 0.00 3.20
599 661 5.522315 TGGAGGAAAGAGAAGAGTAGAGA 57.478 43.478 0.00 0.00 0.00 3.10
600 662 5.714806 AGTTGGAGGAAAGAGAAGAGTAGAG 59.285 44.000 0.00 0.00 0.00 2.43
601 663 5.646215 AGTTGGAGGAAAGAGAAGAGTAGA 58.354 41.667 0.00 0.00 0.00 2.59
602 664 5.993748 AGTTGGAGGAAAGAGAAGAGTAG 57.006 43.478 0.00 0.00 0.00 2.57
603 665 6.071278 GCTTAGTTGGAGGAAAGAGAAGAGTA 60.071 42.308 0.00 0.00 0.00 2.59
604 666 5.279758 GCTTAGTTGGAGGAAAGAGAAGAGT 60.280 44.000 0.00 0.00 0.00 3.24
605 667 5.175127 GCTTAGTTGGAGGAAAGAGAAGAG 58.825 45.833 0.00 0.00 0.00 2.85
606 668 4.593206 TGCTTAGTTGGAGGAAAGAGAAGA 59.407 41.667 0.00 0.00 0.00 2.87
607 669 4.899502 TGCTTAGTTGGAGGAAAGAGAAG 58.100 43.478 0.00 0.00 0.00 2.85
608 670 4.593206 TCTGCTTAGTTGGAGGAAAGAGAA 59.407 41.667 0.00 0.00 0.00 2.87
609 671 4.160329 TCTGCTTAGTTGGAGGAAAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
610 672 4.543590 TCTGCTTAGTTGGAGGAAAGAG 57.456 45.455 0.00 0.00 0.00 2.85
611 673 4.974645 TTCTGCTTAGTTGGAGGAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
612 674 7.872113 ATATTTCTGCTTAGTTGGAGGAAAG 57.128 36.000 0.00 0.00 0.00 2.62
613 675 8.548877 AGTATATTTCTGCTTAGTTGGAGGAAA 58.451 33.333 0.00 0.00 0.00 3.13
614 676 8.090788 AGTATATTTCTGCTTAGTTGGAGGAA 57.909 34.615 0.00 0.00 0.00 3.36
615 677 7.676683 AGTATATTTCTGCTTAGTTGGAGGA 57.323 36.000 0.00 0.00 0.00 3.71
636 698 9.546428 GTAACGGGCTAAAGGAATAAATTAGTA 57.454 33.333 0.00 0.00 0.00 1.82
637 699 8.270030 AGTAACGGGCTAAAGGAATAAATTAGT 58.730 33.333 0.00 0.00 0.00 2.24
638 700 8.672823 AGTAACGGGCTAAAGGAATAAATTAG 57.327 34.615 0.00 0.00 0.00 1.73
639 701 8.266473 TGAGTAACGGGCTAAAGGAATAAATTA 58.734 33.333 0.00 0.00 0.00 1.40
640 702 7.114095 TGAGTAACGGGCTAAAGGAATAAATT 58.886 34.615 0.00 0.00 0.00 1.82
641 703 6.655930 TGAGTAACGGGCTAAAGGAATAAAT 58.344 36.000 0.00 0.00 0.00 1.40
642 704 6.052405 TGAGTAACGGGCTAAAGGAATAAA 57.948 37.500 0.00 0.00 0.00 1.40
643 705 5.667466 CTGAGTAACGGGCTAAAGGAATAA 58.333 41.667 0.00 0.00 0.00 1.40
644 706 4.442472 GCTGAGTAACGGGCTAAAGGAATA 60.442 45.833 0.00 0.00 0.00 1.75
645 707 3.681874 GCTGAGTAACGGGCTAAAGGAAT 60.682 47.826 0.00 0.00 0.00 3.01
646 708 2.354403 GCTGAGTAACGGGCTAAAGGAA 60.354 50.000 0.00 0.00 0.00 3.36
647 709 1.206371 GCTGAGTAACGGGCTAAAGGA 59.794 52.381 0.00 0.00 0.00 3.36
648 710 1.207329 AGCTGAGTAACGGGCTAAAGG 59.793 52.381 0.00 0.00 32.94 3.11
649 711 2.166664 AGAGCTGAGTAACGGGCTAAAG 59.833 50.000 0.00 0.00 35.01 1.85
650 712 2.176889 AGAGCTGAGTAACGGGCTAAA 58.823 47.619 0.00 0.00 35.01 1.85
651 713 1.848652 AGAGCTGAGTAACGGGCTAA 58.151 50.000 0.00 0.00 35.01 3.09
652 714 2.092538 AGTAGAGCTGAGTAACGGGCTA 60.093 50.000 0.00 0.00 35.01 3.93
653 715 1.104630 GTAGAGCTGAGTAACGGGCT 58.895 55.000 0.00 0.00 37.77 5.19
654 716 1.104630 AGTAGAGCTGAGTAACGGGC 58.895 55.000 0.00 0.00 0.00 6.13
665 727 4.873746 TGAAAGCAAGTACAGTAGAGCT 57.126 40.909 0.00 0.00 0.00 4.09
666 728 5.220303 CGAATGAAAGCAAGTACAGTAGAGC 60.220 44.000 0.00 0.00 0.00 4.09
667 729 5.864474 ACGAATGAAAGCAAGTACAGTAGAG 59.136 40.000 0.00 0.00 0.00 2.43
668 730 5.633601 CACGAATGAAAGCAAGTACAGTAGA 59.366 40.000 0.00 0.00 0.00 2.59
669 731 5.668866 GCACGAATGAAAGCAAGTACAGTAG 60.669 44.000 0.00 0.00 0.00 2.57
670 732 4.151689 GCACGAATGAAAGCAAGTACAGTA 59.848 41.667 0.00 0.00 0.00 2.74
671 733 3.058914 GCACGAATGAAAGCAAGTACAGT 60.059 43.478 0.00 0.00 0.00 3.55
672 734 3.187227 AGCACGAATGAAAGCAAGTACAG 59.813 43.478 0.00 0.00 0.00 2.74
673 735 3.138304 AGCACGAATGAAAGCAAGTACA 58.862 40.909 0.00 0.00 0.00 2.90
674 736 3.722082 CGAGCACGAATGAAAGCAAGTAC 60.722 47.826 0.00 0.00 42.66 2.73
675 737 2.411748 CGAGCACGAATGAAAGCAAGTA 59.588 45.455 0.00 0.00 42.66 2.24
676 738 1.195448 CGAGCACGAATGAAAGCAAGT 59.805 47.619 0.00 0.00 42.66 3.16
677 739 1.195448 ACGAGCACGAATGAAAGCAAG 59.805 47.619 11.40 0.00 42.66 4.01
678 740 1.225855 ACGAGCACGAATGAAAGCAA 58.774 45.000 11.40 0.00 42.66 3.91
679 741 1.194547 GAACGAGCACGAATGAAAGCA 59.805 47.619 11.40 0.00 42.66 3.91
680 742 1.783416 CGAACGAGCACGAATGAAAGC 60.783 52.381 11.40 0.00 42.66 3.51
681 743 1.201812 CCGAACGAGCACGAATGAAAG 60.202 52.381 11.40 0.00 42.66 2.62
682 744 0.787787 CCGAACGAGCACGAATGAAA 59.212 50.000 11.40 0.00 42.66 2.69
683 745 0.319211 ACCGAACGAGCACGAATGAA 60.319 50.000 11.40 0.00 42.66 2.57
684 746 1.006825 CACCGAACGAGCACGAATGA 61.007 55.000 11.40 0.00 42.66 2.57
685 747 1.416049 CACCGAACGAGCACGAATG 59.584 57.895 11.40 0.00 42.66 2.67
686 748 2.380410 GCACCGAACGAGCACGAAT 61.380 57.895 11.40 0.00 42.66 3.34
705 767 0.036858 GAGCAGAGGCCGAAAGAACT 60.037 55.000 0.00 0.00 42.56 3.01
706 768 1.021920 GGAGCAGAGGCCGAAAGAAC 61.022 60.000 0.00 0.00 42.56 3.01
749 812 4.390556 AGAGGGAGCAGAGGCCGT 62.391 66.667 0.00 0.00 42.56 5.68
780 843 4.736896 GGGTCCCGCACGACAGTC 62.737 72.222 0.00 0.00 34.24 3.51
807 870 1.808945 GATGGGCCTCTTATTGCATCG 59.191 52.381 4.53 0.00 0.00 3.84
847 910 1.854434 GCTGTCACCGTTTGTTTCGTG 60.854 52.381 0.00 0.00 0.00 4.35
856 919 1.078426 GCTATGGGCTGTCACCGTT 60.078 57.895 0.00 0.00 38.06 4.44
880 943 1.544686 GAGGTGTGTTTTGTGCAACG 58.455 50.000 0.00 0.00 42.39 4.10
1265 1335 1.655654 CTCGGTCTATCAGCGCACG 60.656 63.158 11.47 0.00 46.01 5.34
1266 1336 1.946650 GCTCGGTCTATCAGCGCAC 60.947 63.158 11.47 0.00 46.01 5.34
1322 1404 2.999063 GCAACCAAGCCATGCCCT 60.999 61.111 0.00 0.00 34.03 5.19
1323 1405 3.305177 CTGCAACCAAGCCATGCCC 62.305 63.158 0.00 0.00 39.31 5.36
1542 1627 0.179000 CCTTGGACCCAGGAATCTCG 59.821 60.000 5.64 0.00 0.00 4.04
1580 1665 6.071334 TCCCTATTTGCATCTCTACTAATCCG 60.071 42.308 0.00 0.00 0.00 4.18
1771 1859 5.923204 ACTTCGCCTAGAAATCATGAGAAT 58.077 37.500 0.09 0.00 38.57 2.40
1856 1944 7.346175 TCCTCATTGAAATCATCATTTCCCAAT 59.654 33.333 0.00 0.00 45.24 3.16
1880 1968 0.462047 CGTCACCAATAGGCACCTCC 60.462 60.000 0.00 0.00 39.06 4.30
1938 2062 1.880027 CAGAAGTACCCCACAAAGCAC 59.120 52.381 0.00 0.00 0.00 4.40
1944 2069 2.526432 GAGACTCAGAAGTACCCCACA 58.474 52.381 0.00 0.00 35.28 4.17
2121 2247 8.445493 CAAGCAGAACTTCAAAAGATTTGTTTT 58.555 29.630 3.06 0.00 36.04 2.43
2150 2276 1.607225 TTGGCCCCAGGAATCTACAT 58.393 50.000 0.00 0.00 0.00 2.29
2244 2370 2.653726 TGCAGGCCATCGACAATAAAT 58.346 42.857 5.01 0.00 0.00 1.40
2248 2374 1.067635 GTTTTGCAGGCCATCGACAAT 60.068 47.619 5.01 0.00 0.00 2.71
2275 2401 3.879892 AGAAGAACAAGCAGAACTCCAAC 59.120 43.478 0.00 0.00 0.00 3.77
2341 2467 6.988622 AATTTCAGAATCTCTCAGAGCAAG 57.011 37.500 0.00 0.00 0.00 4.01
2366 2492 8.728833 GCATCCCTCAGAATAAATAGAATGAAG 58.271 37.037 0.00 0.00 0.00 3.02
2425 2551 7.824289 CCAAGTCAGAGACCTAAATTCAATACA 59.176 37.037 0.00 0.00 32.18 2.29
2428 2554 5.649831 GCCAAGTCAGAGACCTAAATTCAAT 59.350 40.000 0.00 0.00 32.18 2.57
2466 2593 5.936956 GGATTCCAATTGTTATTTGCCAACA 59.063 36.000 4.43 0.00 34.18 3.33
2502 2734 5.296151 TGAGTCAGACAAGTCAAATTCCT 57.704 39.130 2.66 0.00 0.00 3.36
2513 2745 6.655003 GTCCCAGATTATTTTGAGTCAGACAA 59.345 38.462 2.66 0.00 0.00 3.18
2514 2746 6.173339 GTCCCAGATTATTTTGAGTCAGACA 58.827 40.000 2.66 0.00 0.00 3.41
2547 2782 6.711277 TGCTATCTCATCAGTTTTACTTGGT 58.289 36.000 0.00 0.00 0.00 3.67
2563 2798 8.704234 CGGAAGAAAGTTATGTTATGCTATCTC 58.296 37.037 0.00 0.00 0.00 2.75
3034 3418 1.251251 GCTCTTGTGACCCTGCAAAT 58.749 50.000 0.00 0.00 0.00 2.32
3152 6055 4.072131 GTGATAGCCCAAGACAGAAACAA 58.928 43.478 0.00 0.00 0.00 2.83
3153 6056 3.559171 GGTGATAGCCCAAGACAGAAACA 60.559 47.826 0.00 0.00 0.00 2.83
3154 6057 3.010420 GGTGATAGCCCAAGACAGAAAC 58.990 50.000 0.00 0.00 0.00 2.78
3401 6544 6.364568 TCCCTCACATCCACATATATCTTG 57.635 41.667 0.00 0.00 0.00 3.02
3508 6655 8.097038 GCTGGATTGGAATGAGTCAATACTATA 58.903 37.037 0.00 0.00 35.73 1.31
3664 6814 6.404734 CCACTTCATGCTACAAATAGGGAAAC 60.405 42.308 0.00 0.00 0.00 2.78
3670 6820 8.613060 ACATATCCACTTCATGCTACAAATAG 57.387 34.615 0.00 0.00 0.00 1.73
3693 6843 8.932945 TGCAACAAGACAAAATTATGTTAACA 57.067 26.923 11.41 11.41 33.24 2.41
3997 7147 3.138798 CACCCATGCTGCCAGCTC 61.139 66.667 18.96 0.00 42.97 4.09
4021 7171 5.121768 GCACCGACTTCTAACAACATAACAT 59.878 40.000 0.00 0.00 0.00 2.71
4050 7200 4.012895 GTGCGTGCAGTGTTCGGG 62.013 66.667 0.00 0.00 0.00 5.14
4064 7216 5.362556 TCTCTTTTCAAGCTTACATGTGC 57.637 39.130 9.11 4.06 0.00 4.57
4106 7258 6.796785 AAAGCAAATCAACTAATGGGCTAT 57.203 33.333 0.00 0.00 0.00 2.97
4135 7287 4.273148 AGAGACATAAACTGGTCCACAC 57.727 45.455 0.00 0.00 34.58 3.82
4163 7315 3.144506 CCACCAAGGACATGCATATCTC 58.855 50.000 4.72 0.00 41.22 2.75
4173 7325 1.816863 GAGCGACTCCACCAAGGACA 61.817 60.000 0.00 0.00 43.07 4.02
4225 7378 2.857186 TAGAAGTGGACATGCTGCAA 57.143 45.000 6.36 0.00 0.00 4.08
4226 7379 2.857186 TTAGAAGTGGACATGCTGCA 57.143 45.000 4.13 4.13 0.00 4.41
4256 7420 1.431496 GCCCATGCACAACAATCAAC 58.569 50.000 0.00 0.00 37.47 3.18
4304 7497 4.685169 ACAATATGCAACTTCAGTTCCG 57.315 40.909 0.00 0.00 35.83 4.30
4307 7500 6.018832 GCAACAAACAATATGCAACTTCAGTT 60.019 34.615 0.00 0.00 38.63 3.16
5050 8268 7.382898 TCATAACTTTTTCCCCAATAACTTGC 58.617 34.615 0.00 0.00 0.00 4.01
5123 8341 3.201487 AGATCTTCATCCTTGCCATGTGA 59.799 43.478 0.00 0.00 0.00 3.58
5406 8624 0.603569 AGTACTGCAGGAGAACACCG 59.396 55.000 19.93 0.00 34.73 4.94
5424 8642 5.698545 ACTCTGAGTAGCTAAAACTGCAAAG 59.301 40.000 8.91 0.00 0.00 2.77
5451 8669 7.447545 AGGGTCTCAATTACTTTAAACTTCACC 59.552 37.037 0.00 0.00 0.00 4.02
5666 8884 7.552459 AGCTGCTTTTTCCTGTAAGTTTAAAA 58.448 30.769 0.00 0.00 0.00 1.52
5732 8950 2.028020 GTCGGAGCAGGGGAATATAAGG 60.028 54.545 0.00 0.00 0.00 2.69
5813 9031 1.493446 TCTCGGCCAGACTGTATAGGA 59.507 52.381 2.24 0.00 0.00 2.94
5921 9139 5.480422 AGCATACAATATGTACTCATCGGGA 59.520 40.000 0.00 0.00 35.42 5.14
6016 9234 4.044065 AGGAATTCCATGTGTACTTGGGAA 59.956 41.667 26.22 9.98 40.45 3.97
6044 9262 6.719370 TGAATATTTCCTGCTGTAAAAGTGGT 59.281 34.615 0.00 0.00 0.00 4.16
6294 9823 4.885907 ACTGATATGAAGCCATGGTTTCAG 59.114 41.667 36.79 28.33 45.61 3.02
6433 9962 3.620488 GGCAACTTCCAGTATCCAATCA 58.380 45.455 0.00 0.00 0.00 2.57
6480 10009 8.850156 GCCCTGTCAGAAAATGTATGTTTATAT 58.150 33.333 0.00 0.00 0.00 0.86
6585 10115 3.119919 GCAGAGAAGAAACTGGCATGAAG 60.120 47.826 0.00 0.00 35.05 3.02
6689 10219 1.967319 AGCATGGTGTTCGTCACTTT 58.033 45.000 0.00 0.54 45.50 2.66
6720 10250 0.523072 TCTGCTTTCGCATTTGGAGC 59.477 50.000 0.00 0.00 46.74 4.70
6803 10333 0.249489 AGACAAGACACTGGCGACAC 60.249 55.000 0.00 0.00 35.60 3.67
6807 10337 0.032678 ACAGAGACAAGACACTGGCG 59.967 55.000 0.00 0.00 33.93 5.69
6814 10344 2.799412 CAGAGCACAACAGAGACAAGAC 59.201 50.000 0.00 0.00 0.00 3.01
6840 10370 0.179020 CAACAGAACAGGACAGGCCA 60.179 55.000 5.01 0.00 40.02 5.36
7235 10766 0.625316 TCACCAGGTGCATGCCTAAT 59.375 50.000 16.68 0.00 37.04 1.73
7262 10793 1.176619 AGGCAGTTAAAACGGGGCAC 61.177 55.000 13.54 0.00 36.58 5.01
7394 10926 8.291032 ACATCAGATTACTACTATTACACGAGC 58.709 37.037 0.00 0.00 0.00 5.03
7401 10933 9.244292 CTGGGCTACATCAGATTACTACTATTA 57.756 37.037 0.00 0.00 33.11 0.98
7424 10956 1.268234 GCGAGCAAAATCGATTCCTGG 60.268 52.381 11.83 10.34 45.56 4.45
7471 11003 5.751028 GGATACATCTGAAGAGTAACACTGC 59.249 44.000 0.00 0.00 0.00 4.40
7472 11004 5.974158 CGGATACATCTGAAGAGTAACACTG 59.026 44.000 0.00 0.00 35.13 3.66
7505 11037 1.901538 CGACGAGATGAACAGGACTG 58.098 55.000 0.00 0.00 0.00 3.51
7506 11038 0.171455 GCGACGAGATGAACAGGACT 59.829 55.000 0.00 0.00 0.00 3.85
7578 11110 7.194607 ACTCAAAGTGACATTGAACAGTATG 57.805 36.000 4.74 0.00 36.43 2.39
7629 11165 3.093057 GCTACAGGGTTCAGAGAGAGAA 58.907 50.000 0.00 0.00 0.00 2.87
7639 11175 0.543749 ATGAGCAGGCTACAGGGTTC 59.456 55.000 0.00 0.00 0.00 3.62
7651 11187 5.603596 AGCTTCTCTCTGAAATATGAGCAG 58.396 41.667 0.00 0.00 33.79 4.24
7687 11223 4.751600 TGCGATAGGAGATGTAATTTGCAG 59.248 41.667 0.00 0.00 0.00 4.41
7707 11243 0.670546 ACAGGAGACGACCAAATGCG 60.671 55.000 0.00 0.00 0.00 4.73
7728 11264 1.542915 CCAGATGCACCAAACTTCTGG 59.457 52.381 14.19 14.19 46.67 3.86
7729 11265 1.068055 GCCAGATGCACCAAACTTCTG 60.068 52.381 4.56 4.56 40.77 3.02
7730 11266 1.202976 AGCCAGATGCACCAAACTTCT 60.203 47.619 0.00 0.00 44.83 2.85
7731 11267 1.068055 CAGCCAGATGCACCAAACTTC 60.068 52.381 0.00 0.00 44.83 3.01
7732 11268 0.963962 CAGCCAGATGCACCAAACTT 59.036 50.000 0.00 0.00 44.83 2.66
7733 11269 0.896940 CCAGCCAGATGCACCAAACT 60.897 55.000 0.00 0.00 44.83 2.66
7734 11270 0.895100 TCCAGCCAGATGCACCAAAC 60.895 55.000 0.00 0.00 44.83 2.93
7735 11271 0.609957 CTCCAGCCAGATGCACCAAA 60.610 55.000 0.00 0.00 44.83 3.28
7736 11272 1.001764 CTCCAGCCAGATGCACCAA 60.002 57.895 0.00 0.00 44.83 3.67
7737 11273 2.672908 CTCCAGCCAGATGCACCA 59.327 61.111 0.00 0.00 44.83 4.17
7738 11274 2.827642 GCTCCAGCCAGATGCACC 60.828 66.667 0.00 0.00 44.83 5.01
7739 11275 2.045634 TGCTCCAGCCAGATGCAC 60.046 61.111 0.00 0.00 44.83 4.57
7867 11406 0.886563 ATTGCTGAGCAGTGAAAGCC 59.113 50.000 7.39 0.00 40.61 4.35
7904 11443 0.034756 TAATGCACGCTGTGGTGAGT 59.965 50.000 10.02 0.00 40.38 3.41
8012 11551 1.378911 TTGCGATGGCTGATTGGCT 60.379 52.632 0.15 0.00 42.34 4.75
8048 11587 4.192317 CCTTTTAGGTCCTCATGTGTAGC 58.808 47.826 0.00 0.00 0.00 3.58
8077 11616 6.681729 TGAGAGTTAGTAGTTTGGGATGTT 57.318 37.500 0.00 0.00 0.00 2.71
8090 11629 2.751166 AGCACGCAATGAGAGTTAGT 57.249 45.000 0.00 0.00 0.00 2.24
8091 11630 2.860735 GGTAGCACGCAATGAGAGTTAG 59.139 50.000 0.00 0.00 0.00 2.34
8092 11631 2.232696 TGGTAGCACGCAATGAGAGTTA 59.767 45.455 0.00 0.00 0.00 2.24
8093 11632 1.001974 TGGTAGCACGCAATGAGAGTT 59.998 47.619 0.00 0.00 0.00 3.01
8118 11657 3.564225 GCCGGAACCAAGAAATAGGTATG 59.436 47.826 5.05 0.00 37.07 2.39
8121 11660 1.340697 GGCCGGAACCAAGAAATAGGT 60.341 52.381 5.05 0.00 40.61 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.