Multiple sequence alignment - TraesCS5D01G291800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G291800 chr5D 100.000 5672 0 0 1 5672 389462602 389456931 0.000000e+00 10475.0
1 TraesCS5D01G291800 chr5D 80.187 535 80 20 1000 1515 390371484 390372011 1.490000e-100 377.0
2 TraesCS5D01G291800 chr5D 80.392 510 84 12 998 1502 390504140 390504638 1.930000e-99 374.0
3 TraesCS5D01G291800 chr5D 80.000 530 76 23 1000 1502 390417850 390418376 1.160000e-96 364.0
4 TraesCS5D01G291800 chr5D 87.324 71 9 0 254 324 344532431 344532501 1.310000e-11 82.4
5 TraesCS5D01G291800 chr5D 95.833 48 2 0 181 228 257735430 257735383 1.690000e-10 78.7
6 TraesCS5D01G291800 chr5B 90.202 3225 207 42 600 3798 469125446 469122305 0.000000e+00 4104.0
7 TraesCS5D01G291800 chr5B 88.429 821 51 22 3888 4687 469122178 469121381 0.000000e+00 950.0
8 TraesCS5D01G291800 chr5B 88.889 720 65 5 998 1714 469300605 469299898 0.000000e+00 872.0
9 TraesCS5D01G291800 chr5B 79.604 809 107 33 4884 5671 469121385 469120614 1.400000e-145 527.0
10 TraesCS5D01G291800 chr5B 79.885 522 83 18 998 1502 470436016 470436532 4.180000e-96 363.0
11 TraesCS5D01G291800 chr5B 79.963 534 73 28 998 1502 470512103 470512631 4.180000e-96 363.0
12 TraesCS5D01G291800 chr5B 88.235 272 26 3 13 282 469126290 469126023 2.550000e-83 320.0
13 TraesCS5D01G291800 chr5B 85.813 289 18 5 337 602 469125864 469125576 9.300000e-73 285.0
14 TraesCS5D01G291800 chr5B 94.118 51 2 1 177 226 89687181 89687131 6.090000e-10 76.8
15 TraesCS5D01G291800 chr5B 85.294 68 8 1 257 324 32065298 32065233 1.020000e-07 69.4
16 TraesCS5D01G291800 chr5B 88.679 53 5 1 176 227 391158837 391158889 4.740000e-06 63.9
17 TraesCS5D01G291800 chr5A 89.346 3351 216 44 1967 5252 492636019 492632745 0.000000e+00 4080.0
18 TraesCS5D01G291800 chr5A 94.901 1412 40 10 513 1916 492637633 492636246 0.000000e+00 2180.0
19 TraesCS5D01G291800 chr5A 80.658 517 82 14 998 1508 493817925 493817421 8.910000e-103 385.0
20 TraesCS5D01G291800 chr5A 80.370 540 74 25 991 1502 493779341 493779876 1.150000e-101 381.0
21 TraesCS5D01G291800 chr5A 78.584 551 91 19 989 1515 493662169 493662716 7.040000e-89 339.0
22 TraesCS5D01G291800 chr5A 86.893 206 24 1 5470 5672 492632289 492632084 1.590000e-55 228.0
23 TraesCS5D01G291800 chr5A 90.909 154 13 1 336 489 492637870 492637718 7.450000e-49 206.0
24 TraesCS5D01G291800 chr2A 79.938 324 41 11 1854 2165 126471295 126470984 3.440000e-52 217.0
25 TraesCS5D01G291800 chr2A 80.412 97 16 2 232 325 579837653 579837749 2.840000e-08 71.3
26 TraesCS5D01G291800 chr1A 79.811 317 40 17 1860 2164 157828673 157828369 5.760000e-50 209.0
27 TraesCS5D01G291800 chr1A 88.333 60 7 0 114 173 307043078 307043019 7.880000e-09 73.1
28 TraesCS5D01G291800 chr7A 79.268 328 45 13 1854 2164 700680117 700679796 2.070000e-49 207.0
29 TraesCS5D01G291800 chr7A 92.647 68 5 0 114 181 611794082 611794015 1.300000e-16 99.0
30 TraesCS5D01G291800 chr7A 90.141 71 7 0 111 181 684935959 684936029 6.050000e-15 93.5
31 TraesCS5D01G291800 chr1B 79.747 316 40 18 1860 2163 635545283 635544980 2.070000e-49 207.0
32 TraesCS5D01G291800 chr1B 79.430 316 41 18 1860 2163 635509582 635509279 9.640000e-48 202.0
33 TraesCS5D01G291800 chr1B 100.000 28 0 0 494 521 207881547 207881574 1.000000e-02 52.8
34 TraesCS5D01G291800 chr6A 79.268 328 41 16 1854 2167 596780914 596780600 2.680000e-48 204.0
35 TraesCS5D01G291800 chr6A 88.060 67 5 2 233 296 46297892 46297958 6.090000e-10 76.8
36 TraesCS5D01G291800 chr4A 79.683 315 39 19 1860 2162 113866283 113865982 2.680000e-48 204.0
37 TraesCS5D01G291800 chr4D 79.739 153 20 5 181 323 295116256 295116105 3.620000e-17 100.0
38 TraesCS5D01G291800 chr4D 84.337 83 11 2 243 324 425705405 425705486 4.710000e-11 80.5
39 TraesCS5D01G291800 chr7D 93.750 64 4 0 110 173 65527165 65527102 4.680000e-16 97.1
40 TraesCS5D01G291800 chrUn 96.000 50 2 0 181 230 94859771 94859722 1.310000e-11 82.4
41 TraesCS5D01G291800 chrUn 81.443 97 12 4 232 324 404263804 404263710 2.190000e-09 75.0
42 TraesCS5D01G291800 chrUn 81.443 97 12 4 232 324 474749695 474749789 2.190000e-09 75.0
43 TraesCS5D01G291800 chr4B 87.324 71 8 1 104 173 658783125 658783055 4.710000e-11 80.5
44 TraesCS5D01G291800 chr2B 94.340 53 2 1 173 225 6060079 6060028 4.710000e-11 80.5
45 TraesCS5D01G291800 chr2B 87.692 65 8 0 110 174 41121180 41121116 6.090000e-10 76.8
46 TraesCS5D01G291800 chr2B 94.000 50 3 0 181 230 775339097 775339048 6.090000e-10 76.8
47 TraesCS5D01G291800 chr2B 88.525 61 7 0 105 165 42955816 42955876 2.190000e-09 75.0
48 TraesCS5D01G291800 chr2B 92.157 51 4 0 124 174 185764187 185764237 7.880000e-09 73.1
49 TraesCS5D01G291800 chr1D 85.714 77 9 2 254 329 348987064 348987139 4.710000e-11 80.5
50 TraesCS5D01G291800 chr3D 76.623 154 29 5 181 327 412076703 412076856 1.690000e-10 78.7
51 TraesCS5D01G291800 chr2D 94.000 50 3 0 181 230 507462790 507462839 6.090000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G291800 chr5D 389456931 389462602 5671 True 10475.0 10475 100.00000 1 5672 1 chr5D.!!$R2 5671
1 TraesCS5D01G291800 chr5D 390371484 390372011 527 False 377.0 377 80.18700 1000 1515 1 chr5D.!!$F2 515
2 TraesCS5D01G291800 chr5D 390417850 390418376 526 False 364.0 364 80.00000 1000 1502 1 chr5D.!!$F3 502
3 TraesCS5D01G291800 chr5B 469120614 469126290 5676 True 1237.2 4104 86.45660 13 5671 5 chr5B.!!$R4 5658
4 TraesCS5D01G291800 chr5B 469299898 469300605 707 True 872.0 872 88.88900 998 1714 1 chr5B.!!$R3 716
5 TraesCS5D01G291800 chr5B 470436016 470436532 516 False 363.0 363 79.88500 998 1502 1 chr5B.!!$F2 504
6 TraesCS5D01G291800 chr5B 470512103 470512631 528 False 363.0 363 79.96300 998 1502 1 chr5B.!!$F3 504
7 TraesCS5D01G291800 chr5A 492632084 492637870 5786 True 1673.5 4080 90.51225 336 5672 4 chr5A.!!$R2 5336
8 TraesCS5D01G291800 chr5A 493817421 493817925 504 True 385.0 385 80.65800 998 1508 1 chr5A.!!$R1 510
9 TraesCS5D01G291800 chr5A 493779341 493779876 535 False 381.0 381 80.37000 991 1502 1 chr5A.!!$F2 511
10 TraesCS5D01G291800 chr5A 493662169 493662716 547 False 339.0 339 78.58400 989 1515 1 chr5A.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1273 0.316196 GCGCTTGTGAGTGTTGTGAC 60.316 55.0 0.00 0.0 35.79 3.67 F
1801 2161 0.029167 TGTTGTTACGCACGAGTCGA 59.971 50.0 21.50 0.0 0.00 4.20 F
2008 2552 0.324943 ATAAAGTCACCACAGGCGCT 59.675 50.0 7.64 0.0 0.00 5.92 F
2016 2560 0.396811 ACCACAGGCGCTTCTTAGTT 59.603 50.0 7.64 0.0 0.00 2.24 F
2473 3021 0.533755 CTCCATCATCGGAGCCAACC 60.534 60.0 0.00 0.0 45.95 3.77 F
3950 4579 0.245539 TCGGCCGTTCCTCAGTTAAG 59.754 55.0 27.15 0.0 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2321 0.179062 ATGCCGGCTCAGTCTCAATC 60.179 55.000 29.70 0.0 0.00 2.67 R
2671 3220 0.464735 TTGTTGGTGCGGCTACAACT 60.465 50.000 27.41 0.0 43.54 3.16 R
3922 4551 0.458669 GGAACGGCCGATCAAGAGTA 59.541 55.000 35.90 0.0 0.00 2.59 R
3949 4578 3.958798 ACCTGTATATGCACGGAACTACT 59.041 43.478 13.45 0.0 0.00 2.57 R
4092 4737 0.039437 ACATCGACAGACGGACACAC 60.039 55.000 0.00 0.0 42.82 3.82 R
5407 6534 0.028770 ACATGAACCAAACACGCACG 59.971 50.000 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.874940 TGATTTATAGGATTTCTCAAATGCGG 58.125 34.615 0.00 0.00 43.12 5.69
59 60 4.821805 GGATTTCTCAAATGCGGGAATAGA 59.178 41.667 0.00 0.00 29.55 1.98
99 100 8.768501 AGAGTAACATGTCATCCTCAATACTA 57.231 34.615 0.00 0.00 0.00 1.82
102 103 8.370940 AGTAACATGTCATCCTCAATACTATGG 58.629 37.037 0.00 0.00 0.00 2.74
112 113 5.248477 TCCTCAATACTATGGGATTGTAGCC 59.752 44.000 13.24 0.00 35.10 3.93
159 160 0.984995 GGATAGTGGTATCCCCAGCC 59.015 60.000 0.53 0.00 46.69 4.85
164 165 1.005423 TGGTATCCCCAGCCCATCA 59.995 57.895 0.00 0.00 38.72 3.07
170 171 0.846427 TCCCCAGCCCATCAGAGTTT 60.846 55.000 0.00 0.00 0.00 2.66
188 189 7.028361 CAGAGTTTAAGACGTTCCTACTAAGG 58.972 42.308 0.00 0.00 45.21 2.69
189 190 5.718146 AGTTTAAGACGTTCCTACTAAGGC 58.282 41.667 0.00 0.00 43.31 4.35
197 198 2.490903 GTTCCTACTAAGGCGTCTGTGA 59.509 50.000 0.00 0.00 43.31 3.58
219 220 4.751843 CGACTTCGTCAATCTCAAGATG 57.248 45.455 0.00 0.00 32.83 2.90
220 221 4.415735 CGACTTCGTCAATCTCAAGATGA 58.584 43.478 0.00 0.00 32.83 2.92
226 227 3.002042 CGTCAATCTCAAGATGATGTGCC 59.998 47.826 0.00 0.00 34.49 5.01
227 228 3.943381 GTCAATCTCAAGATGATGTGCCA 59.057 43.478 0.00 0.00 34.49 4.92
228 229 4.035324 GTCAATCTCAAGATGATGTGCCAG 59.965 45.833 0.00 0.00 34.49 4.85
229 230 2.034104 TCTCAAGATGATGTGCCAGC 57.966 50.000 0.00 0.00 0.00 4.85
239 240 0.330604 ATGTGCCAGCAGAGGTGATT 59.669 50.000 0.00 0.00 32.22 2.57
243 244 3.199727 TGTGCCAGCAGAGGTGATTATAA 59.800 43.478 0.00 0.00 32.22 0.98
244 245 4.199310 GTGCCAGCAGAGGTGATTATAAA 58.801 43.478 0.00 0.00 32.22 1.40
250 251 6.226787 CAGCAGAGGTGATTATAAAGGTAGG 58.773 44.000 0.00 0.00 32.22 3.18
255 258 7.289317 CAGAGGTGATTATAAAGGTAGGGTGTA 59.711 40.741 0.00 0.00 0.00 2.90
273 276 4.816385 GGTGTATGTGTGTTCATAGGGATG 59.184 45.833 0.00 0.00 32.01 3.51
282 285 5.425217 TGTGTTCATAGGGATGAGTGTATGT 59.575 40.000 0.00 0.00 43.03 2.29
283 286 5.755375 GTGTTCATAGGGATGAGTGTATGTG 59.245 44.000 0.00 0.00 43.03 3.21
284 287 5.425217 TGTTCATAGGGATGAGTGTATGTGT 59.575 40.000 0.00 0.00 43.03 3.72
285 288 5.535753 TCATAGGGATGAGTGTATGTGTG 57.464 43.478 0.00 0.00 37.15 3.82
286 289 4.962362 TCATAGGGATGAGTGTATGTGTGT 59.038 41.667 0.00 0.00 37.15 3.72
287 290 6.133356 TCATAGGGATGAGTGTATGTGTGTA 58.867 40.000 0.00 0.00 37.15 2.90
288 291 6.782494 TCATAGGGATGAGTGTATGTGTGTAT 59.218 38.462 0.00 0.00 37.15 2.29
289 292 7.947890 TCATAGGGATGAGTGTATGTGTGTATA 59.052 37.037 0.00 0.00 37.15 1.47
290 293 8.753133 CATAGGGATGAGTGTATGTGTGTATAT 58.247 37.037 0.00 0.00 34.73 0.86
291 294 9.990868 ATAGGGATGAGTGTATGTGTGTATATA 57.009 33.333 0.00 0.00 0.00 0.86
292 295 8.901472 AGGGATGAGTGTATGTGTGTATATAT 57.099 34.615 0.00 0.00 0.00 0.86
293 296 8.753133 AGGGATGAGTGTATGTGTGTATATATG 58.247 37.037 0.00 0.00 0.00 1.78
299 302 8.331730 AGTGTATGTGTGTATATATGAGCGTA 57.668 34.615 0.00 0.00 0.00 4.42
305 308 9.952188 ATGTGTGTATATATGAGCGTATACATC 57.048 33.333 3.32 1.04 42.47 3.06
316 319 5.977129 TGAGCGTATACATCTGTATTGTGTG 59.023 40.000 8.07 0.00 41.18 3.82
317 320 6.144078 AGCGTATACATCTGTATTGTGTGA 57.856 37.500 8.07 0.00 41.18 3.58
485 604 3.130516 TGCGAAACAAACAACCCATGTAA 59.869 39.130 0.00 0.00 42.99 2.41
588 768 8.844704 CATGAATCATGATGGCCTTCCCAAAC 62.845 46.154 17.76 4.52 43.81 2.93
719 1031 2.767505 GGCGAGGAAGAAAAGACAAGA 58.232 47.619 0.00 0.00 0.00 3.02
720 1032 3.339141 GGCGAGGAAGAAAAGACAAGAT 58.661 45.455 0.00 0.00 0.00 2.40
721 1033 3.372514 GGCGAGGAAGAAAAGACAAGATC 59.627 47.826 0.00 0.00 0.00 2.75
739 1051 4.629122 AGATCAGGAGGGAGAAGAATGAA 58.371 43.478 0.00 0.00 0.00 2.57
872 1184 4.285292 CTGCAAATCAGAATATGTTCCGC 58.715 43.478 0.00 0.00 45.72 5.54
953 1266 3.481903 ATCGCGCGCTTGTGAGTG 61.482 61.111 30.48 11.00 36.46 3.51
954 1267 4.942481 TCGCGCGCTTGTGAGTGT 62.942 61.111 30.48 0.00 35.79 3.55
955 1268 4.000557 CGCGCGCTTGTGAGTGTT 62.001 61.111 30.48 0.00 35.79 3.32
956 1269 2.425773 GCGCGCTTGTGAGTGTTG 60.426 61.111 26.67 0.00 35.79 3.33
957 1270 3.014036 CGCGCTTGTGAGTGTTGT 58.986 55.556 5.56 0.00 35.79 3.32
958 1271 1.368019 CGCGCTTGTGAGTGTTGTG 60.368 57.895 5.56 0.00 35.79 3.33
959 1272 1.761244 CGCGCTTGTGAGTGTTGTGA 61.761 55.000 5.56 0.00 35.79 3.58
960 1273 0.316196 GCGCTTGTGAGTGTTGTGAC 60.316 55.000 0.00 0.00 35.79 3.67
961 1274 1.290203 CGCTTGTGAGTGTTGTGACT 58.710 50.000 0.00 0.00 0.00 3.41
977 1290 2.029244 GTGACTTGTGAGTTGTGACACG 59.971 50.000 0.22 0.00 39.52 4.49
1195 1508 4.155733 CGCGCATGGACCCCTACA 62.156 66.667 8.75 0.00 0.00 2.74
1196 1509 2.270850 GCGCATGGACCCCTACAA 59.729 61.111 0.30 0.00 0.00 2.41
1470 1827 0.740868 CGGTGGTGCAGATCATCGTT 60.741 55.000 8.56 0.00 0.00 3.85
1777 2137 2.554462 GCAACTTTTTCTCTGGGAGGAC 59.446 50.000 0.00 0.00 0.00 3.85
1801 2161 0.029167 TGTTGTTACGCACGAGTCGA 59.971 50.000 21.50 0.00 0.00 4.20
1853 2213 1.202758 TCACATCCTCGTTTTGGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
1856 2216 2.293399 ACATCCTCGTTTTGGTGCTTTC 59.707 45.455 0.00 0.00 0.00 2.62
1916 2276 2.572243 CGTACACTCGTCTCTGTGAAC 58.428 52.381 0.00 0.00 37.59 3.18
1934 2301 2.452813 CGCACACGCACACCCTATC 61.453 63.158 0.00 0.00 38.40 2.08
1935 2302 2.106683 GCACACGCACACCCTATCC 61.107 63.158 0.00 0.00 38.36 2.59
1949 2316 2.493500 CCCTATCCCTATGAGCACCTCA 60.494 54.545 0.00 0.00 44.99 3.86
1952 2319 2.079170 TCCCTATGAGCACCTCAGAG 57.921 55.000 9.31 9.31 45.86 3.35
1958 2325 3.823281 ATGAGCACCTCAGAGAGATTG 57.177 47.619 0.00 0.00 44.08 2.67
1974 2516 0.463295 ATTGAGACTGAGCCGGCATG 60.463 55.000 31.54 19.90 0.00 4.06
2004 2548 5.491070 TGAGATTGATAAAGTCACCACAGG 58.509 41.667 0.00 0.00 36.32 4.00
2006 2550 2.093306 TGATAAAGTCACCACAGGCG 57.907 50.000 0.00 0.00 0.00 5.52
2008 2552 0.324943 ATAAAGTCACCACAGGCGCT 59.675 50.000 7.64 0.00 0.00 5.92
2011 2555 2.031163 GTCACCACAGGCGCTTCT 59.969 61.111 7.64 0.00 0.00 2.85
2016 2560 0.396811 ACCACAGGCGCTTCTTAGTT 59.603 50.000 7.64 0.00 0.00 2.24
2017 2561 0.798776 CCACAGGCGCTTCTTAGTTG 59.201 55.000 7.64 0.00 0.00 3.16
2029 2574 4.799917 GCTTCTTAGTTGAGGGAACGTCTT 60.800 45.833 0.00 0.00 44.45 3.01
2038 2583 2.824341 GAGGGAACGTCTTCTTCCACTA 59.176 50.000 5.63 0.00 39.29 2.74
2042 2587 3.427863 GGAACGTCTTCTTCCACTAAACG 59.572 47.826 0.00 0.00 37.68 3.60
2087 2632 9.956720 AAAATAAATCCAAGATAATGCGAGAAG 57.043 29.630 0.00 0.00 0.00 2.85
2139 2685 1.692519 GCTATCCACGGTCCACCTAAT 59.307 52.381 0.00 0.00 0.00 1.73
2153 2699 5.760253 GTCCACCTAATCATCTAACCACATG 59.240 44.000 0.00 0.00 0.00 3.21
2166 2712 0.880441 CCACATGTTGGTTCGCATCA 59.120 50.000 0.00 0.00 41.10 3.07
2182 2728 1.811965 CATCATCGTTTTGGTGCTGGA 59.188 47.619 0.00 0.00 0.00 3.86
2198 2744 5.049129 GGTGCTGGAATATATGCAAAGACTC 60.049 44.000 0.00 0.00 37.17 3.36
2202 2748 6.128795 GCTGGAATATATGCAAAGACTCGTAC 60.129 42.308 0.00 0.00 0.00 3.67
2210 2756 2.341760 GCAAAGACTCGTACGACATGAC 59.658 50.000 15.28 5.63 0.00 3.06
2213 2759 0.723414 GACTCGTACGACATGACGGA 59.277 55.000 20.92 10.67 39.53 4.69
2243 2789 4.837298 TGATTGGGATGTGTCATGGAAAAA 59.163 37.500 0.00 0.00 0.00 1.94
2274 2820 4.881157 ATTGGTTGGGTTAAGGATAGCT 57.119 40.909 0.00 0.00 0.00 3.32
2296 2842 6.049149 GCTAACCACTCTTGCAGTTATATCA 58.951 40.000 0.00 0.00 30.26 2.15
2379 2927 8.927675 ATAAACCACTACAAATACCACTGAAA 57.072 30.769 0.00 0.00 0.00 2.69
2414 2962 1.379044 CCATGAGGGTTGACTGCCC 60.379 63.158 0.00 0.00 46.43 5.36
2420 2968 1.532238 GGGTTGACTGCCCCTATCC 59.468 63.158 0.00 0.00 40.26 2.59
2473 3021 0.533755 CTCCATCATCGGAGCCAACC 60.534 60.000 0.00 0.00 45.95 3.77
2494 3043 1.134226 GTGTTTTCGATCACGGACGT 58.866 50.000 0.00 0.00 40.21 4.34
2508 3057 1.659098 CGGACGTGAAGTTATCAAGGC 59.341 52.381 0.00 0.00 44.04 4.35
2526 3075 1.310933 GCCACATCTTGCCAGACCAG 61.311 60.000 0.00 0.00 0.00 4.00
2528 3077 1.376424 ACATCTTGCCAGACCAGCG 60.376 57.895 0.00 0.00 0.00 5.18
2532 3081 3.865929 CTTGCCAGACCAGCGTCGT 62.866 63.158 0.00 0.00 44.28 4.34
2543 3092 1.673033 CCAGCGTCGTGGAGAAGAAAT 60.673 52.381 7.78 0.00 40.44 2.17
2589 3138 5.355350 GGATACAAGAGTCAAACCTCCATTG 59.645 44.000 0.00 0.00 31.53 2.82
2613 3162 2.980233 ACAAGCCTCGCAAGCACC 60.980 61.111 0.00 0.00 37.18 5.01
2643 3192 2.100631 CGATGTGGTGGAGGCGAAC 61.101 63.158 0.00 0.00 0.00 3.95
2649 3198 2.031465 GTGGAGGCGAACCCGAAA 59.969 61.111 0.00 0.00 39.21 3.46
2660 3209 2.453080 GAACCCGAAAAACCAAACGAC 58.547 47.619 0.00 0.00 0.00 4.34
2669 3218 4.538746 AAAACCAAACGACAAAGGGAAA 57.461 36.364 0.00 0.00 0.00 3.13
2671 3220 5.855740 AAACCAAACGACAAAGGGAAATA 57.144 34.783 0.00 0.00 0.00 1.40
2677 3227 6.016943 CCAAACGACAAAGGGAAATAGTTGTA 60.017 38.462 0.00 0.00 34.44 2.41
2683 3233 1.557832 AGGGAAATAGTTGTAGCCGCA 59.442 47.619 0.00 0.00 0.00 5.69
2710 3260 7.253422 CAACAAGCCCTTCAAACTATAATCTG 58.747 38.462 0.00 0.00 0.00 2.90
2741 3291 1.812507 GGCCGAGCCGAAAATACGT 60.813 57.895 0.00 0.00 39.62 3.57
2763 3313 1.212751 CGAGTCATCGGCACAGTCA 59.787 57.895 0.00 0.00 45.39 3.41
2793 3344 0.895530 GTTGTGATGGGGAGACTCGA 59.104 55.000 0.00 0.00 0.00 4.04
2997 3555 8.377034 TGAAATCAGTTCCATGGAAAATCAAAT 58.623 29.630 28.64 12.42 35.75 2.32
3084 3642 1.916506 TGTCCCGAATCCAATGCAAA 58.083 45.000 0.00 0.00 0.00 3.68
3111 3669 7.418337 AGTTTTCACCCTTTACTTTCAATGT 57.582 32.000 0.00 0.00 0.00 2.71
3127 3685 3.057174 TCAATGTTGGCCGTATTTGGTTC 60.057 43.478 0.00 0.00 0.00 3.62
3199 3757 7.373441 CGTCAAGACACAAAATAAGACAAGTTC 59.627 37.037 0.72 0.00 0.00 3.01
3236 3794 3.456380 TTTCAGGAGGATTTGAAGGGG 57.544 47.619 0.00 0.00 35.01 4.79
3238 3796 2.200081 TCAGGAGGATTTGAAGGGGAG 58.800 52.381 0.00 0.00 0.00 4.30
3367 3926 9.907229 TTTGGGAATTGTTAATGTTAAAAACCT 57.093 25.926 0.00 0.00 0.00 3.50
3393 3952 8.661352 AAAGGTTCACAAATTTATGTTGGAAG 57.339 30.769 0.00 0.00 0.00 3.46
3490 4049 5.891451 TGTTCTAATACTGTCGGATGTGAG 58.109 41.667 0.00 0.00 0.00 3.51
3495 4057 7.383687 TCTAATACTGTCGGATGTGAGTTTTT 58.616 34.615 0.00 0.00 0.00 1.94
3507 4069 7.331934 CGGATGTGAGTTTTTCTATGAAGAGAA 59.668 37.037 0.00 0.00 33.57 2.87
3661 4227 3.497942 GGAACATGTACCAACTGTCCCTT 60.498 47.826 0.00 0.00 0.00 3.95
3736 4306 4.042271 ACAAATACCCCTTGTTAGTGGG 57.958 45.455 0.00 0.00 45.34 4.61
3750 4320 5.475719 TGTTAGTGGGACAGACGAATAAAG 58.524 41.667 0.00 0.00 41.80 1.85
3753 4323 4.822026 AGTGGGACAGACGAATAAAGAAG 58.178 43.478 0.00 0.00 41.80 2.85
3754 4324 4.527038 AGTGGGACAGACGAATAAAGAAGA 59.473 41.667 0.00 0.00 41.80 2.87
3755 4325 4.865365 GTGGGACAGACGAATAAAGAAGAG 59.135 45.833 0.00 0.00 41.80 2.85
3756 4326 4.770531 TGGGACAGACGAATAAAGAAGAGA 59.229 41.667 0.00 0.00 0.00 3.10
3757 4327 5.103687 GGGACAGACGAATAAAGAAGAGAC 58.896 45.833 0.00 0.00 0.00 3.36
3758 4328 5.105675 GGGACAGACGAATAAAGAAGAGACT 60.106 44.000 0.00 0.00 0.00 3.24
3759 4329 5.802956 GGACAGACGAATAAAGAAGAGACTG 59.197 44.000 0.00 0.00 0.00 3.51
3782 4352 9.102757 ACTGTGTGCTCAACAATCTATAATTAG 57.897 33.333 0.00 0.00 41.57 1.73
3796 4366 7.969536 TCTATAATTAGATCAACTTGCAGGC 57.030 36.000 0.00 0.00 29.27 4.85
3920 4549 3.093814 TGGCATCCTTCTGAACGTACTA 58.906 45.455 0.00 0.00 0.00 1.82
3921 4550 3.512329 TGGCATCCTTCTGAACGTACTAA 59.488 43.478 0.00 0.00 0.00 2.24
3922 4551 4.161565 TGGCATCCTTCTGAACGTACTAAT 59.838 41.667 0.00 0.00 0.00 1.73
3945 4574 0.807667 CTTGATCGGCCGTTCCTCAG 60.808 60.000 28.58 19.07 0.00 3.35
3947 4576 1.218316 GATCGGCCGTTCCTCAGTT 59.782 57.895 27.15 0.00 0.00 3.16
3948 4577 0.458669 GATCGGCCGTTCCTCAGTTA 59.541 55.000 27.15 0.67 0.00 2.24
3949 4578 0.899720 ATCGGCCGTTCCTCAGTTAA 59.100 50.000 27.15 0.03 0.00 2.01
3950 4579 0.245539 TCGGCCGTTCCTCAGTTAAG 59.754 55.000 27.15 0.00 0.00 1.85
4082 4727 5.105752 AGCTAGCTAGAACTCACGAAATTG 58.894 41.667 25.15 0.00 0.00 2.32
4086 4731 1.156736 AGAACTCACGAAATTGCCGG 58.843 50.000 0.00 0.00 0.00 6.13
4106 4755 2.733593 GGCGTGTGTCCGTCTGTC 60.734 66.667 0.00 0.00 0.00 3.51
4107 4756 3.097728 GCGTGTGTCCGTCTGTCG 61.098 66.667 0.00 0.00 39.52 4.35
4299 4955 1.134818 TCGCCATCATACAGGTCACAC 60.135 52.381 0.00 0.00 0.00 3.82
4301 4957 1.747206 GCCATCATACAGGTCACACCC 60.747 57.143 0.00 0.00 39.75 4.61
4302 4958 1.839994 CCATCATACAGGTCACACCCT 59.160 52.381 0.00 0.00 39.75 4.34
4304 4960 3.181465 CCATCATACAGGTCACACCCTAC 60.181 52.174 0.00 0.00 39.75 3.18
4305 4961 3.178412 TCATACAGGTCACACCCTACA 57.822 47.619 0.00 0.00 39.75 2.74
4306 4962 3.512496 TCATACAGGTCACACCCTACAA 58.488 45.455 0.00 0.00 39.75 2.41
4308 4964 4.161565 TCATACAGGTCACACCCTACAATC 59.838 45.833 0.00 0.00 39.75 2.67
4309 4965 2.621070 ACAGGTCACACCCTACAATCT 58.379 47.619 0.00 0.00 39.75 2.40
4310 4966 3.786553 ACAGGTCACACCCTACAATCTA 58.213 45.455 0.00 0.00 39.75 1.98
4311 4967 3.514309 ACAGGTCACACCCTACAATCTAC 59.486 47.826 0.00 0.00 39.75 2.59
4312 4968 3.513912 CAGGTCACACCCTACAATCTACA 59.486 47.826 0.00 0.00 39.75 2.74
4314 4970 4.020485 AGGTCACACCCTACAATCTACAAC 60.020 45.833 0.00 0.00 39.75 3.32
4320 4978 5.995897 ACACCCTACAATCTACAACAAGTTC 59.004 40.000 0.00 0.00 0.00 3.01
4369 5027 1.070821 ATCGACTGACACGCATGTTG 58.929 50.000 0.00 0.00 39.95 3.33
4380 5038 1.440353 GCATGTTGTTCGCCGTGTC 60.440 57.895 0.00 0.00 0.00 3.67
4410 5068 0.933097 CTTCACCTGGCGATTCGATG 59.067 55.000 10.88 0.00 0.00 3.84
4508 5166 1.411493 GCTCAGCACCGCGTAAGTAC 61.411 60.000 4.92 0.00 41.68 2.73
4510 5168 1.399440 CTCAGCACCGCGTAAGTACTA 59.601 52.381 4.92 0.00 41.68 1.82
4512 5170 1.131883 CAGCACCGCGTAAGTACTAGT 59.868 52.381 4.92 0.00 41.68 2.57
4513 5171 2.352651 CAGCACCGCGTAAGTACTAGTA 59.647 50.000 4.92 0.00 41.68 1.82
4539 5200 9.909644 ATATTATAACTACGTCTGCTTGGTTAG 57.090 33.333 0.00 0.00 0.00 2.34
4543 5204 5.458041 ACTACGTCTGCTTGGTTAGTTAA 57.542 39.130 0.00 0.00 0.00 2.01
4611 5281 4.974645 ATCTTGCAGGGTTATATTCGGA 57.025 40.909 0.00 0.00 0.00 4.55
4656 5326 4.905269 TGATCGTGTACTACATCGTTCTG 58.095 43.478 15.46 0.00 30.41 3.02
4675 5345 3.132289 TCTGGGCTTCGTTGGATAGTTAG 59.868 47.826 0.00 0.00 0.00 2.34
4681 5351 3.155093 TCGTTGGATAGTTAGTTCGGC 57.845 47.619 0.00 0.00 0.00 5.54
4690 5360 8.834004 TGGATAGTTAGTTCGGCCTTATATAT 57.166 34.615 0.00 0.00 0.00 0.86
4730 5402 2.546652 ACCCTAGGGACTGACTAACC 57.453 55.000 35.38 0.00 41.52 2.85
4745 5417 4.021807 TGACTAACCGATGAGTAAACTGCA 60.022 41.667 0.00 0.00 0.00 4.41
4752 5424 4.870426 CCGATGAGTAAACTGCATGTACTT 59.130 41.667 5.78 0.00 0.00 2.24
4754 5426 5.220472 CGATGAGTAAACTGCATGTACTTGG 60.220 44.000 10.47 0.00 0.00 3.61
4755 5427 4.968259 TGAGTAAACTGCATGTACTTGGT 58.032 39.130 10.47 0.00 0.00 3.67
4756 5428 5.373222 TGAGTAAACTGCATGTACTTGGTT 58.627 37.500 10.47 4.64 0.00 3.67
4759 5431 6.292923 AGTAAACTGCATGTACTTGGTTGTA 58.707 36.000 10.47 1.92 0.00 2.41
4772 5444 6.833342 ACTTGGTTGTAGTAAGTTGTAACG 57.167 37.500 0.00 0.00 30.98 3.18
4773 5445 5.754890 ACTTGGTTGTAGTAAGTTGTAACGG 59.245 40.000 0.00 0.00 30.98 4.44
4787 5459 1.197036 GTAACGGGCTCTTCTGCAAAC 59.803 52.381 0.00 0.00 34.04 2.93
4796 5468 4.164294 GCTCTTCTGCAAACAATGATCAC 58.836 43.478 0.00 0.00 0.00 3.06
4797 5469 4.082895 GCTCTTCTGCAAACAATGATCACT 60.083 41.667 0.00 0.00 0.00 3.41
4798 5470 5.366829 TCTTCTGCAAACAATGATCACTG 57.633 39.130 1.88 1.88 0.00 3.66
4817 5489 3.073062 ACTGCAACTAACACCCTCTGAAT 59.927 43.478 0.00 0.00 0.00 2.57
4830 5502 1.003116 CTCTGAATTGCGCACATAGGC 60.003 52.381 11.12 0.00 0.00 3.93
4852 5524 4.065789 CCCCTCGTTAATAAATGGAGCTC 58.934 47.826 4.71 4.71 0.00 4.09
4911 5584 2.747686 GGCGGAGAACTTGTGGGA 59.252 61.111 0.00 0.00 0.00 4.37
4991 5670 2.636893 AGTTCCAGCACACTCTGAAGAT 59.363 45.455 0.00 0.00 36.19 2.40
4992 5671 2.740981 GTTCCAGCACACTCTGAAGATG 59.259 50.000 0.00 0.00 36.19 2.90
4995 5674 2.424557 CAGCACACTCTGAAGATGCTT 58.575 47.619 4.53 0.00 42.60 3.91
5006 5685 4.757149 TCTGAAGATGCTTCGATCGAGATA 59.243 41.667 18.54 8.68 0.00 1.98
5017 5696 2.543031 CGATCGAGATAAAACGGCCTGA 60.543 50.000 10.26 0.00 0.00 3.86
5101 5780 4.023193 CCATCCAACGGCCTACATTTAATC 60.023 45.833 0.00 0.00 0.00 1.75
5115 5794 0.539518 TTAATCACCTAGCTGGCGCA 59.460 50.000 10.83 0.00 40.22 6.09
5118 5797 0.533755 ATCACCTAGCTGGCGCATTC 60.534 55.000 10.83 0.00 40.22 2.67
5183 5864 6.204108 CACCTTTTACTTCTTCGGTGTAATGT 59.796 38.462 0.00 0.00 37.66 2.71
5200 5881 9.543783 GGTGTAATGTCTCCTTATAAAACCTAG 57.456 37.037 0.00 0.00 0.00 3.02
5236 5917 3.631250 AGGGCATCAAATTGTAATCGGT 58.369 40.909 0.00 0.00 0.00 4.69
5238 5919 4.111916 GGGCATCAAATTGTAATCGGTTG 58.888 43.478 0.00 0.00 0.00 3.77
5239 5920 4.381505 GGGCATCAAATTGTAATCGGTTGT 60.382 41.667 0.00 0.00 0.00 3.32
5240 5921 5.163602 GGGCATCAAATTGTAATCGGTTGTA 60.164 40.000 0.00 0.00 0.00 2.41
5257 6374 1.021968 GTAAACCCTAGCCGCCATTG 58.978 55.000 0.00 0.00 0.00 2.82
5260 6377 0.621609 AACCCTAGCCGCCATTGTAA 59.378 50.000 0.00 0.00 0.00 2.41
5262 6379 1.214424 ACCCTAGCCGCCATTGTAATT 59.786 47.619 0.00 0.00 0.00 1.40
5266 6383 2.652941 AGCCGCCATTGTAATTGTTG 57.347 45.000 0.00 0.00 0.00 3.33
5267 6384 1.204467 AGCCGCCATTGTAATTGTTGG 59.796 47.619 0.00 0.00 0.00 3.77
5286 6403 2.714250 TGGCCTCTACTTTTCCCTTTGA 59.286 45.455 3.32 0.00 0.00 2.69
5333 6450 3.196613 CGAATTCGGGGCTAGCTAC 57.803 57.895 20.16 8.05 35.37 3.58
5342 6459 3.321111 TCGGGGCTAGCTACTGAAATTAG 59.679 47.826 15.72 0.00 0.00 1.73
5343 6460 3.069729 CGGGGCTAGCTACTGAAATTAGT 59.930 47.826 15.72 0.00 34.71 2.24
5344 6461 4.381411 GGGGCTAGCTACTGAAATTAGTG 58.619 47.826 15.72 0.00 32.19 2.74
5345 6462 4.101119 GGGGCTAGCTACTGAAATTAGTGA 59.899 45.833 15.72 0.00 32.19 3.41
5346 6463 5.293560 GGGCTAGCTACTGAAATTAGTGAG 58.706 45.833 15.72 0.00 32.19 3.51
5347 6464 4.747605 GGCTAGCTACTGAAATTAGTGAGC 59.252 45.833 15.72 0.00 32.43 4.26
5348 6465 4.442733 GCTAGCTACTGAAATTAGTGAGCG 59.557 45.833 7.70 0.00 34.95 5.03
5349 6466 4.720649 AGCTACTGAAATTAGTGAGCGA 57.279 40.909 0.00 0.00 34.95 4.93
5350 6467 4.677584 AGCTACTGAAATTAGTGAGCGAG 58.322 43.478 0.00 0.00 34.95 5.03
5362 6489 0.461548 TGAGCGAGTGACCATGATCC 59.538 55.000 0.00 0.00 0.00 3.36
5372 6499 0.826715 ACCATGATCCTGACGGTGAG 59.173 55.000 0.00 0.00 0.00 3.51
5374 6501 1.208052 CCATGATCCTGACGGTGAGTT 59.792 52.381 0.00 0.00 0.00 3.01
5391 6518 1.890041 TTGTCTCGGGCGTGTTTGG 60.890 57.895 0.00 0.00 0.00 3.28
5392 6519 2.280592 GTCTCGGGCGTGTTTGGT 60.281 61.111 0.00 0.00 0.00 3.67
5393 6520 1.890510 GTCTCGGGCGTGTTTGGTT 60.891 57.895 0.00 0.00 0.00 3.67
5394 6521 1.595929 TCTCGGGCGTGTTTGGTTC 60.596 57.895 0.00 0.00 0.00 3.62
5395 6522 1.890041 CTCGGGCGTGTTTGGTTCA 60.890 57.895 0.00 0.00 0.00 3.18
5396 6523 1.228003 TCGGGCGTGTTTGGTTCAT 60.228 52.632 0.00 0.00 0.00 2.57
5397 6524 1.081509 CGGGCGTGTTTGGTTCATG 60.082 57.895 0.00 0.00 0.00 3.07
5398 6525 1.791103 CGGGCGTGTTTGGTTCATGT 61.791 55.000 0.00 0.00 0.00 3.21
5399 6526 0.039527 GGGCGTGTTTGGTTCATGTC 60.040 55.000 0.00 0.00 0.00 3.06
5400 6527 0.039527 GGCGTGTTTGGTTCATGTCC 60.040 55.000 0.00 0.00 0.00 4.02
5401 6528 0.385473 GCGTGTTTGGTTCATGTCCG 60.385 55.000 0.00 0.00 0.00 4.79
5402 6529 1.222300 CGTGTTTGGTTCATGTCCGA 58.778 50.000 0.00 0.00 0.00 4.55
5403 6530 1.070175 CGTGTTTGGTTCATGTCCGAC 60.070 52.381 0.00 0.00 0.00 4.79
5404 6531 2.218603 GTGTTTGGTTCATGTCCGACT 58.781 47.619 0.00 0.00 0.00 4.18
5405 6532 2.223377 GTGTTTGGTTCATGTCCGACTC 59.777 50.000 0.00 0.00 0.00 3.36
5406 6533 2.104111 TGTTTGGTTCATGTCCGACTCT 59.896 45.455 0.00 0.00 0.00 3.24
5407 6534 2.737252 GTTTGGTTCATGTCCGACTCTC 59.263 50.000 0.00 0.00 0.00 3.20
5408 6535 0.526211 TGGTTCATGTCCGACTCTCG 59.474 55.000 0.00 0.00 40.07 4.04
5409 6536 0.526662 GGTTCATGTCCGACTCTCGT 59.473 55.000 0.00 0.00 38.40 4.18
5410 6537 1.618861 GTTCATGTCCGACTCTCGTG 58.381 55.000 0.00 0.00 38.40 4.35
5411 6538 0.109272 TTCATGTCCGACTCTCGTGC 60.109 55.000 0.00 0.00 38.40 5.34
5412 6539 1.869574 CATGTCCGACTCTCGTGCG 60.870 63.158 0.00 0.00 38.40 5.34
5413 6540 2.333417 ATGTCCGACTCTCGTGCGT 61.333 57.895 0.00 0.00 38.40 5.24
5414 6541 2.502080 GTCCGACTCTCGTGCGTG 60.502 66.667 0.00 0.00 38.40 5.34
5415 6542 2.976350 TCCGACTCTCGTGCGTGT 60.976 61.111 0.00 0.00 38.40 4.49
5416 6543 2.050351 CCGACTCTCGTGCGTGTT 60.050 61.111 0.00 0.00 38.40 3.32
5417 6544 1.660575 CCGACTCTCGTGCGTGTTT 60.661 57.895 0.00 0.00 38.40 2.83
5418 6545 1.482955 CGACTCTCGTGCGTGTTTG 59.517 57.895 0.00 0.00 34.72 2.93
5428 6555 0.665835 TGCGTGTTTGGTTCATGTCC 59.334 50.000 0.00 0.00 0.00 4.02
5438 6565 1.072331 GGTTCATGTCCAGTCACAGGT 59.928 52.381 0.00 0.00 30.00 4.00
5442 6569 0.687354 ATGTCCAGTCACAGGTGTCC 59.313 55.000 0.00 0.00 0.00 4.02
5466 6593 4.561731 GGATGCCGAGATCGCTAC 57.438 61.111 0.00 0.00 38.18 3.58
5468 6595 1.442857 GATGCCGAGATCGCTACCG 60.443 63.158 0.00 0.00 38.18 4.02
5486 6615 4.564116 CGCCAGGTAGTACCGCCG 62.564 72.222 13.76 13.06 44.90 6.46
5501 6630 1.737793 CCGCCGAGAAGCAAACTAAAT 59.262 47.619 0.00 0.00 0.00 1.40
5510 6639 4.018415 AGAAGCAAACTAAATAGGGCTCCA 60.018 41.667 0.00 0.00 31.86 3.86
5536 6665 2.208431 CATCTCGGCTCTTCAATCACC 58.792 52.381 0.00 0.00 0.00 4.02
5537 6666 1.266178 TCTCGGCTCTTCAATCACCA 58.734 50.000 0.00 0.00 0.00 4.17
5541 6670 1.879380 CGGCTCTTCAATCACCACAAA 59.121 47.619 0.00 0.00 0.00 2.83
5557 6688 2.222027 ACAAAAGTGTGGTAGCAGAGC 58.778 47.619 0.00 0.00 36.31 4.09
5559 6690 2.618241 CAAAAGTGTGGTAGCAGAGCAA 59.382 45.455 0.00 0.00 37.28 3.91
5565 6699 0.835971 TGGTAGCAGAGCAAGACCCA 60.836 55.000 0.00 0.00 30.90 4.51
5598 6732 6.422776 AGTGTTGTCCATTGATTCGATTAC 57.577 37.500 0.00 0.00 0.00 1.89
5610 6744 6.801539 TGATTCGATTACAGATTTATGGCC 57.198 37.500 0.00 0.00 0.00 5.36
5640 6774 9.578439 ACAAATTAGAGCTTGCAAAATTCTATC 57.422 29.630 0.00 0.00 0.00 2.08
5641 6775 9.577110 CAAATTAGAGCTTGCAAAATTCTATCA 57.423 29.630 0.00 0.00 0.00 2.15
5649 6783 6.591062 GCTTGCAAAATTCTATCAACCAATGA 59.409 34.615 0.00 0.00 43.67 2.57
5651 6785 6.397272 TGCAAAATTCTATCAACCAATGACC 58.603 36.000 0.00 0.00 41.93 4.02
5662 6796 6.139679 TCAACCAATGACCTTTATCCTTCT 57.860 37.500 0.00 0.00 31.50 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.240267 ACAAAGAGACCTAACCTATTAGCTAG 57.760 38.462 0.00 0.00 37.12 3.42
2 3 8.475639 CAACAAAGAGACCTAACCTATTAGCTA 58.524 37.037 0.00 0.00 37.12 3.32
3 4 7.180408 TCAACAAAGAGACCTAACCTATTAGCT 59.820 37.037 0.00 0.00 37.12 3.32
4 5 7.328737 TCAACAAAGAGACCTAACCTATTAGC 58.671 38.462 0.00 0.00 37.12 3.09
5 6 9.892130 AATCAACAAAGAGACCTAACCTATTAG 57.108 33.333 0.00 0.00 38.04 1.73
10 11 9.892130 CTATAAATCAACAAAGAGACCTAACCT 57.108 33.333 0.00 0.00 0.00 3.50
11 12 9.110502 CCTATAAATCAACAAAGAGACCTAACC 57.889 37.037 0.00 0.00 0.00 2.85
34 35 3.924114 TCCCGCATTTGAGAAATCCTA 57.076 42.857 0.00 0.00 0.00 2.94
99 100 2.917713 TTGGTTGGCTACAATCCCAT 57.082 45.000 0.80 0.00 36.88 4.00
153 154 2.239654 TCTTAAACTCTGATGGGCTGGG 59.760 50.000 0.00 0.00 0.00 4.45
159 160 4.822026 AGGAACGTCTTAAACTCTGATGG 58.178 43.478 0.00 0.00 0.00 3.51
164 165 6.350027 GCCTTAGTAGGAACGTCTTAAACTCT 60.350 42.308 0.00 0.00 45.05 3.24
170 171 3.347216 ACGCCTTAGTAGGAACGTCTTA 58.653 45.455 0.00 0.00 45.05 2.10
205 206 3.943381 TGGCACATCATCTTGAGATTGAC 59.057 43.478 0.90 0.00 31.21 3.18
216 217 0.107312 ACCTCTGCTGGCACATCATC 60.107 55.000 0.00 0.00 38.20 2.92
219 220 0.107312 ATCACCTCTGCTGGCACATC 60.107 55.000 0.00 0.00 38.20 3.06
220 221 0.330604 AATCACCTCTGCTGGCACAT 59.669 50.000 0.00 0.00 38.20 3.21
226 227 6.226787 CCTACCTTTATAATCACCTCTGCTG 58.773 44.000 0.00 0.00 0.00 4.41
227 228 5.308237 CCCTACCTTTATAATCACCTCTGCT 59.692 44.000 0.00 0.00 0.00 4.24
228 229 5.071923 ACCCTACCTTTATAATCACCTCTGC 59.928 44.000 0.00 0.00 0.00 4.26
229 230 6.099845 ACACCCTACCTTTATAATCACCTCTG 59.900 42.308 0.00 0.00 0.00 3.35
239 240 7.180587 TGAACACACATACACCCTACCTTTATA 59.819 37.037 0.00 0.00 0.00 0.98
243 244 3.649023 TGAACACACATACACCCTACCTT 59.351 43.478 0.00 0.00 0.00 3.50
244 245 3.244582 TGAACACACATACACCCTACCT 58.755 45.455 0.00 0.00 0.00 3.08
250 251 4.481368 TCCCTATGAACACACATACACC 57.519 45.455 0.00 0.00 0.00 4.16
255 258 4.225942 ACACTCATCCCTATGAACACACAT 59.774 41.667 0.00 0.00 41.57 3.21
273 276 7.306213 ACGCTCATATATACACACATACACTC 58.694 38.462 0.00 0.00 0.00 3.51
282 285 9.174166 ACAGATGTATACGCTCATATATACACA 57.826 33.333 6.31 0.00 43.55 3.72
289 292 8.523658 ACACAATACAGATGTATACGCTCATAT 58.476 33.333 5.94 0.00 40.10 1.78
290 293 7.807907 CACACAATACAGATGTATACGCTCATA 59.192 37.037 5.94 0.00 40.10 2.15
291 294 6.642540 CACACAATACAGATGTATACGCTCAT 59.357 38.462 5.94 0.00 40.10 2.90
292 295 5.977129 CACACAATACAGATGTATACGCTCA 59.023 40.000 5.94 0.00 40.10 4.26
293 296 6.206498 TCACACAATACAGATGTATACGCTC 58.794 40.000 5.94 0.00 40.10 5.03
329 332 8.765219 GCATAATCAAATGTCTATACAGTTCGT 58.235 33.333 0.00 0.00 41.70 3.85
330 333 7.946768 CGCATAATCAAATGTCTATACAGTTCG 59.053 37.037 0.00 0.00 41.70 3.95
331 334 7.742089 GCGCATAATCAAATGTCTATACAGTTC 59.258 37.037 0.30 0.00 41.70 3.01
332 335 7.226523 TGCGCATAATCAAATGTCTATACAGTT 59.773 33.333 5.66 0.00 44.28 3.16
333 336 6.705825 TGCGCATAATCAAATGTCTATACAGT 59.294 34.615 5.66 0.00 39.49 3.55
334 337 7.120789 TGCGCATAATCAAATGTCTATACAG 57.879 36.000 5.66 0.00 39.49 2.74
385 504 3.721087 AAATTTCCATCCACCTCGACT 57.279 42.857 0.00 0.00 0.00 4.18
505 654 9.579932 AAGAACTTTTAGGTCTCTTTGATTCAT 57.420 29.630 0.00 0.00 42.51 2.57
588 768 4.210331 AGCATGGGAAGTATTAAGGCTTG 58.790 43.478 10.69 0.00 0.00 4.01
719 1031 3.133721 CGTTCATTCTTCTCCCTCCTGAT 59.866 47.826 0.00 0.00 0.00 2.90
720 1032 2.497675 CGTTCATTCTTCTCCCTCCTGA 59.502 50.000 0.00 0.00 0.00 3.86
721 1033 2.497675 TCGTTCATTCTTCTCCCTCCTG 59.502 50.000 0.00 0.00 0.00 3.86
739 1051 1.647629 CGCACTCTACCGCTATCGT 59.352 57.895 0.00 0.00 0.00 3.73
953 1266 3.435327 TGTCACAACTCACAAGTCACAAC 59.565 43.478 0.00 0.00 33.48 3.32
954 1267 3.435327 GTGTCACAACTCACAAGTCACAA 59.565 43.478 0.00 0.00 33.48 3.33
955 1268 3.000041 GTGTCACAACTCACAAGTCACA 59.000 45.455 0.00 0.00 33.48 3.58
956 1269 2.029244 CGTGTCACAACTCACAAGTCAC 59.971 50.000 3.42 0.00 33.48 3.67
957 1270 2.267426 CGTGTCACAACTCACAAGTCA 58.733 47.619 3.42 0.00 33.48 3.41
958 1271 1.004927 GCGTGTCACAACTCACAAGTC 60.005 52.381 3.42 0.00 33.48 3.01
959 1272 1.006832 GCGTGTCACAACTCACAAGT 58.993 50.000 3.42 0.00 37.32 3.16
960 1273 0.043053 CGCGTGTCACAACTCACAAG 60.043 55.000 0.00 0.00 34.66 3.16
961 1274 0.458716 TCGCGTGTCACAACTCACAA 60.459 50.000 5.77 0.00 34.66 3.33
1195 1508 1.080025 GGACGCGGTAGTTGAGCTT 60.080 57.895 12.47 0.00 0.00 3.74
1196 1509 1.935327 GAGGACGCGGTAGTTGAGCT 61.935 60.000 12.47 0.00 0.00 4.09
1548 1905 2.126463 TCCTCGCTCGCTGAAACG 60.126 61.111 0.00 0.00 0.00 3.60
1777 2137 3.252274 CGTGCGTAACAACATCACG 57.748 52.632 0.00 0.00 43.19 4.35
1801 2161 0.879765 ATCGAGACCGTCTTGACGTT 59.120 50.000 19.00 7.64 39.56 3.99
1864 2224 4.628074 GCCTGTGTCTGTACTTTGTTCTA 58.372 43.478 0.00 0.00 0.00 2.10
1874 2234 1.824852 ACATGATCGCCTGTGTCTGTA 59.175 47.619 0.00 0.00 0.00 2.74
1896 2256 2.572243 GTTCACAGAGACGAGTGTACG 58.428 52.381 0.00 0.00 37.07 3.67
1934 2301 1.962807 CTCTCTGAGGTGCTCATAGGG 59.037 57.143 4.59 0.00 39.92 3.53
1935 2302 2.942804 TCTCTCTGAGGTGCTCATAGG 58.057 52.381 4.59 0.00 39.92 2.57
1949 2316 2.023673 CGGCTCAGTCTCAATCTCTCT 58.976 52.381 0.00 0.00 0.00 3.10
1952 2319 0.529555 GCCGGCTCAGTCTCAATCTC 60.530 60.000 22.15 0.00 0.00 2.75
1953 2320 1.260538 TGCCGGCTCAGTCTCAATCT 61.261 55.000 29.70 0.00 0.00 2.40
1954 2321 0.179062 ATGCCGGCTCAGTCTCAATC 60.179 55.000 29.70 0.00 0.00 2.67
1955 2322 0.463295 CATGCCGGCTCAGTCTCAAT 60.463 55.000 29.70 6.09 0.00 2.57
1956 2323 1.078918 CATGCCGGCTCAGTCTCAA 60.079 57.895 29.70 3.35 0.00 3.02
1957 2324 2.230994 GACATGCCGGCTCAGTCTCA 62.231 60.000 29.70 4.25 0.00 3.27
1958 2325 1.520342 GACATGCCGGCTCAGTCTC 60.520 63.158 29.70 9.51 0.00 3.36
1966 2333 0.462581 TCTCAAGATGACATGCCGGC 60.463 55.000 22.73 22.73 0.00 6.13
1974 2516 7.550551 TGGTGACTTTATCAATCTCAAGATGAC 59.449 37.037 0.00 0.00 39.72 3.06
2004 2548 1.732809 GTTCCCTCAACTAAGAAGCGC 59.267 52.381 0.00 0.00 31.50 5.92
2006 2550 2.994578 GACGTTCCCTCAACTAAGAAGC 59.005 50.000 0.00 0.00 32.09 3.86
2008 2552 4.587684 AGAAGACGTTCCCTCAACTAAGAA 59.412 41.667 0.00 0.00 32.48 2.52
2011 2555 4.262335 GGAAGAAGACGTTCCCTCAACTAA 60.262 45.833 0.00 0.00 38.03 2.24
2016 2560 1.343465 GTGGAAGAAGACGTTCCCTCA 59.657 52.381 0.86 0.00 42.63 3.86
2017 2561 1.619332 AGTGGAAGAAGACGTTCCCTC 59.381 52.381 0.86 0.00 42.63 4.30
2029 2574 2.789208 CGATACGCGTTTAGTGGAAGA 58.211 47.619 20.78 0.00 34.64 2.87
2061 2606 9.956720 CTTCTCGCATTATCTTGGATTTATTTT 57.043 29.630 0.00 0.00 0.00 1.82
2066 2611 4.883585 TGCTTCTCGCATTATCTTGGATTT 59.116 37.500 0.00 0.00 45.47 2.17
2085 2630 3.733709 CAGGGTTCAAGTCCTGCTT 57.266 52.632 0.00 0.00 43.22 3.91
2122 2668 1.874129 TGATTAGGTGGACCGTGGAT 58.126 50.000 0.00 0.00 42.08 3.41
2131 2677 5.684704 ACATGTGGTTAGATGATTAGGTGG 58.315 41.667 0.00 0.00 32.28 4.61
2153 2699 2.611974 AAACGATGATGCGAACCAAC 57.388 45.000 0.00 0.00 34.83 3.77
2166 2712 5.278463 GCATATATTCCAGCACCAAAACGAT 60.278 40.000 0.00 0.00 0.00 3.73
2182 2728 6.500910 TGTCGTACGAGTCTTTGCATATATT 58.499 36.000 20.18 0.00 0.00 1.28
2198 2744 3.122278 ACATTTTTCCGTCATGTCGTACG 59.878 43.478 9.53 9.53 38.80 3.67
2202 2748 3.804518 TCACATTTTTCCGTCATGTCG 57.195 42.857 5.32 5.32 0.00 4.35
2210 2756 4.175516 CACATCCCAATCACATTTTTCCG 58.824 43.478 0.00 0.00 0.00 4.30
2213 2759 5.804944 TGACACATCCCAATCACATTTTT 57.195 34.783 0.00 0.00 0.00 1.94
2243 2789 6.266786 CCTTAACCCAACCAATAAGTGTTCTT 59.733 38.462 0.00 0.00 37.65 2.52
2245 2791 5.771165 TCCTTAACCCAACCAATAAGTGTTC 59.229 40.000 0.00 0.00 0.00 3.18
2274 2820 9.461312 AATTTGATATAACTGCAAGAGTGGTTA 57.539 29.630 0.00 0.00 37.43 2.85
2339 2887 9.227777 GTAGTGGTTTATTTGACCCATATATCC 57.772 37.037 0.00 0.00 36.30 2.59
2379 2927 6.153340 CCCTCATGGACTTTGATGTACAATTT 59.847 38.462 0.00 0.00 34.08 1.82
2414 2962 2.044806 CTGCCTGTTCGGGGGATAGG 62.045 65.000 0.00 0.00 0.00 2.57
2415 2963 1.048724 TCTGCCTGTTCGGGGGATAG 61.049 60.000 0.00 0.00 0.00 2.08
2420 2968 4.760047 CCGTCTGCCTGTTCGGGG 62.760 72.222 0.00 0.00 39.41 5.73
2471 3019 1.069513 TCCGTGATCGAAAACACAGGT 59.930 47.619 16.58 0.00 39.71 4.00
2473 3021 1.124297 CGTCCGTGATCGAAAACACAG 59.876 52.381 16.58 8.73 39.71 3.66
2494 3043 4.574674 AGATGTGGCCTTGATAACTTCA 57.425 40.909 3.32 0.00 0.00 3.02
2508 3057 1.310933 GCTGGTCTGGCAAGATGTGG 61.311 60.000 0.00 0.00 34.13 4.17
2520 3069 1.867919 CTTCTCCACGACGCTGGTCT 61.868 60.000 13.68 0.00 41.16 3.85
2521 3070 1.444553 CTTCTCCACGACGCTGGTC 60.445 63.158 13.68 0.00 39.89 4.02
2526 3075 0.640768 CGATTTCTTCTCCACGACGC 59.359 55.000 0.00 0.00 0.00 5.19
2528 3077 3.611549 GGTAACGATTTCTTCTCCACGAC 59.388 47.826 0.00 0.00 0.00 4.34
2589 3138 0.944386 TTGCGAGGCTTGTGAGAAAC 59.056 50.000 3.19 0.00 0.00 2.78
2605 3154 3.697439 TATGGCCTCCGGTGCTTGC 62.697 63.158 16.27 6.68 0.00 4.01
2613 3162 1.665916 CACATCGCTATGGCCTCCG 60.666 63.158 3.32 1.06 37.43 4.63
2621 3170 1.447643 GCCTCCACCACATCGCTAT 59.552 57.895 0.00 0.00 0.00 2.97
2643 3192 2.563471 TTGTCGTTTGGTTTTTCGGG 57.437 45.000 0.00 0.00 0.00 5.14
2647 3196 4.538746 TTCCCTTTGTCGTTTGGTTTTT 57.461 36.364 0.00 0.00 0.00 1.94
2649 3198 4.746535 ATTTCCCTTTGTCGTTTGGTTT 57.253 36.364 0.00 0.00 0.00 3.27
2660 3209 3.181500 GCGGCTACAACTATTTCCCTTTG 60.181 47.826 0.00 0.00 0.00 2.77
2669 3218 1.002659 TGTTGGTGCGGCTACAACTAT 59.997 47.619 27.41 0.00 43.54 2.12
2671 3220 0.464735 TTGTTGGTGCGGCTACAACT 60.465 50.000 27.41 0.00 43.54 3.16
2683 3233 2.159179 AGTTTGAAGGGCTTGTTGGT 57.841 45.000 0.00 0.00 0.00 3.67
2729 3279 2.190981 ACTCGATGACGTATTTTCGGC 58.809 47.619 0.00 0.00 40.69 5.54
2731 3281 5.225619 GATGACTCGATGACGTATTTTCG 57.774 43.478 0.00 0.00 40.69 3.46
2763 3313 1.136305 CCATCACAACGGGTCGTCTAT 59.864 52.381 0.00 0.00 39.99 1.98
2793 3344 0.835276 GCGGGTGTATAAGGTTCCCT 59.165 55.000 0.00 0.00 36.30 4.20
2917 3471 8.964476 TGTCATCCTATGATTTAAAGTCCTTC 57.036 34.615 0.00 0.00 42.04 3.46
2967 3525 5.726980 TTCCATGGAACTGATTTCAAAGG 57.273 39.130 23.63 0.00 35.70 3.11
2968 3526 7.874016 TGATTTTCCATGGAACTGATTTCAAAG 59.126 33.333 27.04 0.00 35.70 2.77
2974 3532 9.826574 CATATTTGATTTTCCATGGAACTGATT 57.173 29.630 27.04 9.06 33.41 2.57
3027 3585 5.740224 GCCTCGAGACATCAAAATAGGATCA 60.740 44.000 15.71 0.00 0.00 2.92
3034 3592 2.787473 TGGCCTCGAGACATCAAAAT 57.213 45.000 15.71 0.00 0.00 1.82
3084 3642 9.981114 CATTGAAAGTAAAGGGTGAAAACTATT 57.019 29.630 0.00 0.00 0.00 1.73
3111 3669 1.883275 CACAGAACCAAATACGGCCAA 59.117 47.619 2.24 0.00 0.00 4.52
3127 3685 5.526479 CCTCATATGACTTTGATGGTCACAG 59.474 44.000 0.00 0.00 44.82 3.66
3199 3757 6.446318 TCCTGAAAATTTCTCACCATTTTCG 58.554 36.000 7.29 7.22 46.06 3.46
3367 3926 9.757227 CTTCCAACATAAATTTGTGAACCTTTA 57.243 29.630 20.29 0.90 0.00 1.85
3490 4049 9.543018 CATTTACCGTTCTCTTCATAGAAAAAC 57.457 33.333 0.00 0.00 37.24 2.43
3495 4057 7.383687 ACAACATTTACCGTTCTCTTCATAGA 58.616 34.615 0.00 0.00 0.00 1.98
3507 4069 3.435671 GCTCTTGCTACAACATTTACCGT 59.564 43.478 0.00 0.00 36.03 4.83
3651 4217 5.763698 GCTTAACACTTTAGAAGGGACAGTT 59.236 40.000 0.00 0.00 35.35 3.16
3652 4218 5.163237 TGCTTAACACTTTAGAAGGGACAGT 60.163 40.000 0.00 0.00 35.35 3.55
3661 4227 6.426937 CACCTAAGCTTGCTTAACACTTTAGA 59.573 38.462 9.86 0.00 0.00 2.10
3705 4275 2.025887 AGGGGTATTTGTTCTGCCTCAG 60.026 50.000 0.00 0.00 0.00 3.35
3736 4306 6.306837 CACAGTCTCTTCTTTATTCGTCTGTC 59.693 42.308 0.00 0.00 31.50 3.51
3750 4320 2.826428 TGTTGAGCACACAGTCTCTTC 58.174 47.619 0.00 0.00 0.00 2.87
3753 4323 3.397482 AGATTGTTGAGCACACAGTCTC 58.603 45.455 3.14 0.00 33.98 3.36
3754 4324 3.482156 AGATTGTTGAGCACACAGTCT 57.518 42.857 3.14 3.14 33.98 3.24
3755 4325 6.968131 TTATAGATTGTTGAGCACACAGTC 57.032 37.500 0.00 0.00 33.98 3.51
3756 4326 7.928307 AATTATAGATTGTTGAGCACACAGT 57.072 32.000 0.00 0.00 33.98 3.55
3757 4327 9.317936 TCTAATTATAGATTGTTGAGCACACAG 57.682 33.333 0.00 0.00 31.95 3.66
3758 4328 9.836864 ATCTAATTATAGATTGTTGAGCACACA 57.163 29.630 0.00 0.00 44.73 3.72
3782 4352 3.192001 TCTGATTTGCCTGCAAGTTGATC 59.808 43.478 7.16 6.08 37.24 2.92
3791 4361 4.650754 AGAATCAATCTGATTTGCCTGC 57.349 40.909 0.00 0.00 46.20 4.85
3796 4366 7.010183 GGATGCAACAAGAATCAATCTGATTTG 59.990 37.037 0.00 0.00 46.20 2.32
3920 4549 2.483188 GGAACGGCCGATCAAGAGTATT 60.483 50.000 35.90 11.64 0.00 1.89
3921 4550 1.068741 GGAACGGCCGATCAAGAGTAT 59.931 52.381 35.90 0.68 0.00 2.12
3922 4551 0.458669 GGAACGGCCGATCAAGAGTA 59.541 55.000 35.90 0.00 0.00 2.59
3945 4574 6.420008 CCTGTATATGCACGGAACTACTTAAC 59.580 42.308 0.00 0.00 0.00 2.01
3947 4576 5.595542 ACCTGTATATGCACGGAACTACTTA 59.404 40.000 13.45 0.00 0.00 2.24
3948 4577 4.404715 ACCTGTATATGCACGGAACTACTT 59.595 41.667 13.45 0.00 0.00 2.24
3949 4578 3.958798 ACCTGTATATGCACGGAACTACT 59.041 43.478 13.45 0.00 0.00 2.57
3950 4579 4.049186 CACCTGTATATGCACGGAACTAC 58.951 47.826 13.45 0.00 0.00 2.73
4086 4731 3.681835 AGACGGACACACGCCTCC 61.682 66.667 0.00 0.00 37.37 4.30
4092 4737 0.039437 ACATCGACAGACGGACACAC 60.039 55.000 0.00 0.00 42.82 3.82
4093 4738 1.525941 TACATCGACAGACGGACACA 58.474 50.000 0.00 0.00 42.82 3.72
4094 4739 2.096980 TCATACATCGACAGACGGACAC 59.903 50.000 0.00 0.00 42.82 3.67
4095 4740 2.354821 CTCATACATCGACAGACGGACA 59.645 50.000 0.00 0.00 42.82 4.02
4096 4741 2.355132 ACTCATACATCGACAGACGGAC 59.645 50.000 0.00 0.00 42.82 4.79
4098 4743 3.108881 CAACTCATACATCGACAGACGG 58.891 50.000 0.00 0.00 42.82 4.79
4099 4744 3.108881 CCAACTCATACATCGACAGACG 58.891 50.000 0.00 0.00 44.09 4.18
4100 4745 4.111375 ACCAACTCATACATCGACAGAC 57.889 45.455 0.00 0.00 0.00 3.51
4106 4755 3.426159 GCAACCAACCAACTCATACATCG 60.426 47.826 0.00 0.00 0.00 3.84
4107 4756 3.505680 TGCAACCAACCAACTCATACATC 59.494 43.478 0.00 0.00 0.00 3.06
4299 4955 9.449719 AAATAGAACTTGTTGTAGATTGTAGGG 57.550 33.333 0.00 0.00 0.00 3.53
4338 4996 3.442273 TGTCAGTCGATGTATGTAGTGCA 59.558 43.478 0.00 0.00 0.00 4.57
4341 4999 3.487042 GCGTGTCAGTCGATGTATGTAGT 60.487 47.826 0.00 0.00 0.00 2.73
4342 5000 3.036633 GCGTGTCAGTCGATGTATGTAG 58.963 50.000 0.00 0.00 0.00 2.74
4343 5001 2.420722 TGCGTGTCAGTCGATGTATGTA 59.579 45.455 0.00 0.00 0.00 2.29
4344 5002 1.201414 TGCGTGTCAGTCGATGTATGT 59.799 47.619 0.00 0.00 0.00 2.29
4345 5003 1.908065 TGCGTGTCAGTCGATGTATG 58.092 50.000 0.00 0.00 0.00 2.39
4346 5004 2.159240 ACATGCGTGTCAGTCGATGTAT 60.159 45.455 5.51 0.00 31.41 2.29
4410 5068 2.203070 CAGCCTGCCGGTACATCC 60.203 66.667 1.90 0.00 0.00 3.51
4539 5200 3.840763 CGCGTTCAGAAATCAAGCTTAAC 59.159 43.478 0.00 0.00 0.00 2.01
4543 5204 1.512926 ACGCGTTCAGAAATCAAGCT 58.487 45.000 5.58 0.00 0.00 3.74
4656 5326 3.538634 ACTAACTATCCAACGAAGCCC 57.461 47.619 0.00 0.00 0.00 5.19
4730 5402 5.220472 CCAAGTACATGCAGTTTACTCATCG 60.220 44.000 0.00 0.00 0.00 3.84
4745 5417 9.264719 GTTACAACTTACTACAACCAAGTACAT 57.735 33.333 0.00 0.00 32.35 2.29
4752 5424 4.630111 CCCGTTACAACTTACTACAACCA 58.370 43.478 0.00 0.00 0.00 3.67
4754 5426 4.309933 AGCCCGTTACAACTTACTACAAC 58.690 43.478 0.00 0.00 0.00 3.32
4755 5427 4.281688 AGAGCCCGTTACAACTTACTACAA 59.718 41.667 0.00 0.00 0.00 2.41
4756 5428 3.828451 AGAGCCCGTTACAACTTACTACA 59.172 43.478 0.00 0.00 0.00 2.74
4759 5431 3.577415 AGAAGAGCCCGTTACAACTTACT 59.423 43.478 0.00 0.00 0.00 2.24
4772 5444 1.888512 TCATTGTTTGCAGAAGAGCCC 59.111 47.619 0.00 0.00 0.00 5.19
4773 5445 3.192001 TGATCATTGTTTGCAGAAGAGCC 59.808 43.478 0.00 0.00 0.00 4.70
4787 5459 4.379813 GGGTGTTAGTTGCAGTGATCATTG 60.380 45.833 13.55 13.55 0.00 2.82
4796 5468 2.839486 TCAGAGGGTGTTAGTTGCAG 57.161 50.000 0.00 0.00 0.00 4.41
4797 5469 3.788227 ATTCAGAGGGTGTTAGTTGCA 57.212 42.857 0.00 0.00 0.00 4.08
4798 5470 3.366374 GCAATTCAGAGGGTGTTAGTTGC 60.366 47.826 0.00 0.00 33.66 4.17
4817 5489 3.697439 GAGGGGCCTATGTGCGCAA 62.697 63.158 14.00 2.60 45.21 4.85
4830 5502 4.065789 GAGCTCCATTTATTAACGAGGGG 58.934 47.826 0.87 0.00 0.00 4.79
4852 5524 9.559732 TCAATGAGAATAAACAGGTACATATGG 57.440 33.333 7.80 0.00 0.00 2.74
4911 5584 1.079543 GAGCCTGACACTCACGCAT 60.080 57.895 0.00 0.00 32.09 4.73
4969 5648 3.230976 TCTTCAGAGTGTGCTGGAACTA 58.769 45.455 0.00 0.00 36.55 2.24
4981 5660 2.685388 TCGATCGAAGCATCTTCAGAGT 59.315 45.455 16.99 0.00 0.00 3.24
4991 5670 3.113322 CCGTTTTATCTCGATCGAAGCA 58.887 45.455 19.92 6.40 0.00 3.91
4992 5671 2.097347 GCCGTTTTATCTCGATCGAAGC 60.097 50.000 19.92 4.92 0.00 3.86
4995 5674 1.679680 AGGCCGTTTTATCTCGATCGA 59.320 47.619 18.32 18.32 0.00 3.59
5006 5685 1.620822 AGCTTCATTCAGGCCGTTTT 58.379 45.000 0.00 0.00 0.00 2.43
5017 5696 3.259876 TGTACCGGTTCACTAGCTTCATT 59.740 43.478 15.04 0.00 0.00 2.57
5115 5794 8.797350 TGTGACATGATCAGAAACAATAGAAT 57.203 30.769 0.00 0.00 38.28 2.40
5118 5797 8.671028 TCAATGTGACATGATCAGAAACAATAG 58.329 33.333 0.00 0.00 38.28 1.73
5200 5881 1.152715 CCCTCTCCGGTAGGACTCC 60.153 68.421 22.42 0.00 42.75 3.85
5208 5889 0.625849 AATTTGATGCCCTCTCCGGT 59.374 50.000 0.00 0.00 0.00 5.28
5236 5917 0.621609 ATGGCGGCTAGGGTTTACAA 59.378 50.000 11.43 0.00 0.00 2.41
5238 5919 1.021968 CAATGGCGGCTAGGGTTTAC 58.978 55.000 11.43 0.00 0.00 2.01
5239 5920 0.621609 ACAATGGCGGCTAGGGTTTA 59.378 50.000 11.43 0.00 0.00 2.01
5240 5921 0.621609 TACAATGGCGGCTAGGGTTT 59.378 50.000 11.43 0.00 0.00 3.27
5243 5924 1.608590 CAATTACAATGGCGGCTAGGG 59.391 52.381 11.43 0.00 0.00 3.53
5257 6374 5.105877 GGGAAAAGTAGAGGCCAACAATTAC 60.106 44.000 5.01 0.32 0.00 1.89
5260 6377 3.076032 AGGGAAAAGTAGAGGCCAACAAT 59.924 43.478 5.01 0.00 0.00 2.71
5262 6379 2.062636 AGGGAAAAGTAGAGGCCAACA 58.937 47.619 5.01 0.00 0.00 3.33
5266 6383 3.434940 TCAAAGGGAAAAGTAGAGGCC 57.565 47.619 0.00 0.00 0.00 5.19
5267 6384 8.926092 ATATTATCAAAGGGAAAAGTAGAGGC 57.074 34.615 0.00 0.00 0.00 4.70
5286 6403 9.226879 GGGGAATCTAGCTAGGGTTTATATTAT 57.773 37.037 20.58 0.00 0.00 1.28
5329 6446 4.266502 CACTCGCTCACTAATTTCAGTAGC 59.733 45.833 0.00 0.00 0.00 3.58
5333 6450 3.614616 GGTCACTCGCTCACTAATTTCAG 59.385 47.826 0.00 0.00 0.00 3.02
5342 6459 1.565305 GATCATGGTCACTCGCTCAC 58.435 55.000 0.00 0.00 0.00 3.51
5343 6460 0.461548 GGATCATGGTCACTCGCTCA 59.538 55.000 8.54 0.00 0.00 4.26
5344 6461 0.749649 AGGATCATGGTCACTCGCTC 59.250 55.000 8.54 0.00 0.00 5.03
5345 6462 0.463204 CAGGATCATGGTCACTCGCT 59.537 55.000 8.54 0.00 0.00 4.93
5346 6463 0.461548 TCAGGATCATGGTCACTCGC 59.538 55.000 8.54 0.00 0.00 5.03
5347 6464 1.534805 CGTCAGGATCATGGTCACTCG 60.535 57.143 8.54 3.27 0.00 4.18
5348 6465 1.202463 CCGTCAGGATCATGGTCACTC 60.202 57.143 8.54 0.00 41.02 3.51
5349 6466 0.826715 CCGTCAGGATCATGGTCACT 59.173 55.000 8.54 0.00 41.02 3.41
5350 6467 0.537188 ACCGTCAGGATCATGGTCAC 59.463 55.000 8.54 0.00 41.02 3.67
5362 6489 0.387367 CCGAGACAACTCACCGTCAG 60.387 60.000 0.00 0.00 42.72 3.51
5372 6499 1.278637 CAAACACGCCCGAGACAAC 59.721 57.895 0.00 0.00 0.00 3.32
5374 6501 2.280524 CCAAACACGCCCGAGACA 60.281 61.111 0.00 0.00 0.00 3.41
5403 6530 0.232303 GAACCAAACACGCACGAGAG 59.768 55.000 0.00 0.00 0.00 3.20
5404 6531 0.460459 TGAACCAAACACGCACGAGA 60.460 50.000 0.00 0.00 0.00 4.04
5405 6532 0.586319 ATGAACCAAACACGCACGAG 59.414 50.000 0.00 0.00 0.00 4.18
5406 6533 0.306228 CATGAACCAAACACGCACGA 59.694 50.000 0.00 0.00 0.00 4.35
5407 6534 0.028770 ACATGAACCAAACACGCACG 59.971 50.000 0.00 0.00 0.00 5.34
5408 6535 1.599419 GGACATGAACCAAACACGCAC 60.599 52.381 0.00 0.00 0.00 5.34
5409 6536 0.665835 GGACATGAACCAAACACGCA 59.334 50.000 0.00 0.00 0.00 5.24
5410 6537 0.665835 TGGACATGAACCAAACACGC 59.334 50.000 12.37 0.00 34.25 5.34
5411 6538 1.946768 ACTGGACATGAACCAAACACG 59.053 47.619 14.75 7.64 36.95 4.49
5412 6539 2.948979 TGACTGGACATGAACCAAACAC 59.051 45.455 14.75 8.73 36.95 3.32
5413 6540 2.948979 GTGACTGGACATGAACCAAACA 59.051 45.455 14.75 13.87 36.95 2.83
5414 6541 2.948979 TGTGACTGGACATGAACCAAAC 59.051 45.455 14.75 13.30 36.95 2.93
5415 6542 3.213506 CTGTGACTGGACATGAACCAAA 58.786 45.455 14.75 4.47 36.95 3.28
5416 6543 2.487086 CCTGTGACTGGACATGAACCAA 60.487 50.000 14.75 1.67 36.95 3.67
5417 6544 1.072173 CCTGTGACTGGACATGAACCA 59.928 52.381 1.83 7.96 35.96 3.67
5418 6545 1.072331 ACCTGTGACTGGACATGAACC 59.928 52.381 15.78 3.02 0.00 3.62
5428 6555 2.069273 GATTTCGGACACCTGTGACTG 58.931 52.381 3.94 3.26 33.90 3.51
5465 6592 3.455469 GGTACTACCTGGCGCGGT 61.455 66.667 8.83 11.83 41.10 5.68
5466 6593 4.564116 CGGTACTACCTGGCGCGG 62.564 72.222 8.83 0.00 35.66 6.46
5468 6595 4.886121 GGCGGTACTACCTGGCGC 62.886 72.222 0.00 0.00 35.66 6.53
5486 6615 4.576873 GGAGCCCTATTTAGTTTGCTTCTC 59.423 45.833 0.00 0.00 0.00 2.87
5501 6630 0.178950 AGATGCGAGATGGAGCCCTA 60.179 55.000 0.00 0.00 0.00 3.53
5510 6639 0.313672 GAAGAGCCGAGATGCGAGAT 59.686 55.000 0.00 0.00 44.57 2.75
5537 6666 2.222027 GCTCTGCTACCACACTTTTGT 58.778 47.619 0.00 0.00 35.84 2.83
5541 6670 1.694150 TCTTGCTCTGCTACCACACTT 59.306 47.619 0.00 0.00 0.00 3.16
5554 6685 1.028868 GCTGGATGTGGGTCTTGCTC 61.029 60.000 0.00 0.00 0.00 4.26
5555 6686 1.001641 GCTGGATGTGGGTCTTGCT 60.002 57.895 0.00 0.00 0.00 3.91
5556 6687 0.895100 TTGCTGGATGTGGGTCTTGC 60.895 55.000 0.00 0.00 0.00 4.01
5557 6688 1.171308 CTTGCTGGATGTGGGTCTTG 58.829 55.000 0.00 0.00 0.00 3.02
5559 6690 0.037303 CACTTGCTGGATGTGGGTCT 59.963 55.000 7.21 0.00 0.00 3.85
5565 6699 1.133823 TGGACAACACTTGCTGGATGT 60.134 47.619 0.00 0.00 0.00 3.06
5598 6732 7.479980 TCTAATTTGTTTCGGCCATAAATCTG 58.520 34.615 2.24 0.00 0.00 2.90
5610 6744 6.509317 TTTTGCAAGCTCTAATTTGTTTCG 57.491 33.333 0.00 0.00 0.00 3.46
5640 6774 5.711976 ACAGAAGGATAAAGGTCATTGGTTG 59.288 40.000 0.00 0.00 0.00 3.77
5641 6775 5.711976 CACAGAAGGATAAAGGTCATTGGTT 59.288 40.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.