Multiple sequence alignment - TraesCS5D01G291700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G291700 chr5D 100.000 4997 0 0 1 4997 389448263 389443267 0.000000e+00 9228.0
1 TraesCS5D01G291700 chr5D 95.890 73 2 1 4415 4486 389443783 389443711 3.160000e-22 117.0
2 TraesCS5D01G291700 chr5D 95.890 73 2 1 4481 4553 389443849 389443778 3.160000e-22 117.0
3 TraesCS5D01G291700 chr5A 93.684 3610 164 35 797 4360 492621480 492617889 0.000000e+00 5345.0
4 TraesCS5D01G291700 chr5A 88.517 418 41 6 3605 4020 492364378 492363966 2.690000e-137 499.0
5 TraesCS5D01G291700 chr5A 88.517 418 41 6 3605 4020 492386909 492386497 2.690000e-137 499.0
6 TraesCS5D01G291700 chr5A 86.124 418 51 6 3605 4020 492318828 492318416 1.280000e-120 444.0
7 TraesCS5D01G291700 chr5A 84.407 481 44 13 1 471 492624158 492623699 1.280000e-120 444.0
8 TraesCS5D01G291700 chr5A 90.674 193 14 2 4478 4668 492617816 492617626 2.310000e-63 254.0
9 TraesCS5D01G291700 chr5A 90.062 161 11 5 468 623 492621763 492621603 2.360000e-48 204.0
10 TraesCS5D01G291700 chr5A 83.028 218 12 13 4723 4922 492617507 492617297 1.850000e-39 174.0
11 TraesCS5D01G291700 chr5A 100.000 28 0 0 684 711 492621572 492621545 9.000000e-03 52.8
12 TraesCS5D01G291700 chr5B 94.749 1676 51 18 2681 4344 469102677 469101027 0.000000e+00 2573.0
13 TraesCS5D01G291700 chr5B 90.215 1717 86 27 995 2640 469104330 469102625 0.000000e+00 2165.0
14 TraesCS5D01G291700 chr5B 91.485 458 33 3 3770 4224 468846165 468845711 4.250000e-175 625.0
15 TraesCS5D01G291700 chr5B 90.728 151 11 3 4520 4668 468916369 468916220 1.100000e-46 198.0
16 TraesCS5D01G291700 chr5B 84.656 189 21 5 4484 4670 468845510 468845328 1.110000e-41 182.0
17 TraesCS5D01G291700 chr5B 78.755 273 22 11 4673 4922 468845297 468845038 3.120000e-32 150.0
18 TraesCS5D01G291700 chr5B 95.833 72 3 0 4670 4741 468916189 468916118 3.160000e-22 117.0
19 TraesCS5D01G291700 chrUn 88.517 418 41 6 3605 4020 307474355 307473943 2.690000e-137 499.0
20 TraesCS5D01G291700 chrUn 88.517 418 41 6 3605 4020 388412329 388411917 2.690000e-137 499.0
21 TraesCS5D01G291700 chr1D 81.015 453 44 24 2162 2610 364495060 364495474 6.240000e-84 322.0
22 TraesCS5D01G291700 chr2D 84.884 172 22 2 2805 2973 185394235 185394405 2.390000e-38 171.0
23 TraesCS5D01G291700 chr3D 84.337 166 20 3 2013 2173 535744132 535744296 1.860000e-34 158.0
24 TraesCS5D01G291700 chr3D 78.107 169 21 11 2805 2973 190250764 190250916 5.330000e-15 93.5
25 TraesCS5D01G291700 chr1A 78.107 169 21 10 2805 2973 67734330 67734178 5.330000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G291700 chr5D 389443267 389448263 4996 True 9228.000000 9228 100.000000 1 4997 1 chr5D.!!$R1 4996
1 TraesCS5D01G291700 chr5A 492617297 492624158 6861 True 1078.966667 5345 90.309167 1 4922 6 chr5A.!!$R4 4921
2 TraesCS5D01G291700 chr5B 469101027 469104330 3303 True 2369.000000 2573 92.482000 995 4344 2 chr5B.!!$R3 3349
3 TraesCS5D01G291700 chr5B 468845038 468846165 1127 True 319.000000 625 84.965333 3770 4922 3 chr5B.!!$R1 1152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 2734 0.039035 TCCTTTCATTTCCCACCCGG 59.961 55.0 0.00 0.00 0.00 5.73 F
1459 3519 0.035630 CTTGGGGGACTGAAGAGCTG 60.036 60.0 0.00 0.00 0.00 4.24 F
1671 3731 1.315257 ATCACCCACAGAATTGCGCC 61.315 55.0 4.18 0.00 0.00 6.53 F
1790 3872 2.412089 GTGCTATTGTGGTTCGACTCAC 59.588 50.0 9.61 9.61 34.71 3.51 F
3520 5637 0.183492 AGTGAGTTTTCCAGCAGCCA 59.817 50.0 0.00 0.00 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 3634 0.388659 GCACCCAGCACATGTTTGAA 59.611 50.000 0.00 0.00 44.79 2.69 R
3215 5328 3.417069 TTGTGACTGACTACAATGGGG 57.583 47.619 0.00 0.00 32.30 4.96 R
3520 5637 7.214467 ACGGTGAACTGATGATTACAAAAAT 57.786 32.000 0.00 0.00 0.00 1.82 R
3722 5842 3.823304 GCTCTGTGGTTTGAGAGGAAAAT 59.177 43.478 0.00 0.00 36.91 1.82 R
4840 7061 0.109723 AGAAAACAGTTAGGCGCCCA 59.890 50.000 26.15 6.66 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.722700 GGCAAAGGCAGGCGAGGA 62.723 66.667 0.00 0.00 43.71 3.71
85 86 3.432051 GAGTCGGCCACCATCTCGG 62.432 68.421 2.24 0.00 42.50 4.63
87 88 3.147595 TCGGCCACCATCTCGGAG 61.148 66.667 2.24 0.00 38.63 4.63
117 118 4.072088 CTCGGGCGCGACAACAAC 62.072 66.667 23.01 0.00 0.00 3.32
138 139 2.539547 CGACACATTTGGATCGGATTGC 60.540 50.000 0.00 0.00 0.00 3.56
140 141 2.026641 CACATTTGGATCGGATTGCCT 58.973 47.619 0.00 0.00 0.00 4.75
147 148 0.819666 GATCGGATTGCCTTGACCCC 60.820 60.000 0.00 0.00 0.00 4.95
154 155 0.178975 TTGCCTTGACCCCGATGTTT 60.179 50.000 0.00 0.00 0.00 2.83
159 160 1.175983 TTGACCCCGATGTTTGCACC 61.176 55.000 0.00 0.00 0.00 5.01
160 161 1.303317 GACCCCGATGTTTGCACCT 60.303 57.895 0.00 0.00 0.00 4.00
163 164 1.603455 CCCGATGTTTGCACCTGGT 60.603 57.895 0.00 0.00 0.00 4.00
189 190 2.202623 GCGACGGCGTGAGAGAAT 60.203 61.111 21.19 0.00 40.36 2.40
197 198 1.372582 GCGTGAGAGAATTGGATGCA 58.627 50.000 0.00 0.00 0.00 3.96
198 199 1.739466 GCGTGAGAGAATTGGATGCAA 59.261 47.619 0.79 0.79 0.00 4.08
202 203 4.511527 GTGAGAGAATTGGATGCAAGAGA 58.488 43.478 5.69 0.00 0.00 3.10
215 216 3.608759 AAGAGAGGCGAGGAGGGCA 62.609 63.158 0.00 0.00 34.40 5.36
224 225 3.406595 GAGGAGGGCATGAACGGGG 62.407 68.421 0.00 0.00 0.00 5.73
231 232 4.856801 CATGAACGGGGGCGGAGG 62.857 72.222 0.00 0.00 0.00 4.30
258 266 4.501714 GGGCGGCGATGTACGTGA 62.502 66.667 12.98 0.00 44.60 4.35
268 276 3.475774 GTACGTGAGCGGGCGTTG 61.476 66.667 0.00 0.00 43.45 4.10
307 318 9.886132 AGTACTATAGTAAAACTTTCACCATGG 57.114 33.333 14.20 11.19 31.52 3.66
312 323 8.934023 ATAGTAAAACTTTCACCATGGAGAAA 57.066 30.769 28.50 28.50 34.54 2.52
318 329 4.281688 ACTTTCACCATGGAGAAACAATGG 59.718 41.667 27.33 20.59 38.31 3.16
319 330 3.805066 TCACCATGGAGAAACAATGGA 57.195 42.857 21.47 0.00 36.33 3.41
333 344 9.196552 GAGAAACAATGGAAATCTTTAGTTTGG 57.803 33.333 0.00 0.00 0.00 3.28
338 349 9.143155 ACAATGGAAATCTTTAGTTTGGTACTT 57.857 29.630 0.00 0.00 38.33 2.24
371 382 5.906073 GGTAAATCCCACATTGAGAAATGG 58.094 41.667 3.70 0.00 34.56 3.16
377 388 5.147032 TCCCACATTGAGAAATGGAAAACT 58.853 37.500 3.70 0.00 33.80 2.66
378 389 5.602145 TCCCACATTGAGAAATGGAAAACTT 59.398 36.000 3.70 0.00 33.80 2.66
379 390 6.099557 TCCCACATTGAGAAATGGAAAACTTT 59.900 34.615 3.70 0.00 33.80 2.66
380 391 6.424812 CCCACATTGAGAAATGGAAAACTTTC 59.575 38.462 3.70 0.00 33.80 2.62
381 392 7.212274 CCACATTGAGAAATGGAAAACTTTCT 58.788 34.615 3.70 0.00 42.77 2.52
386 397 5.438761 AGAAATGGAAAACTTTCTCCACG 57.561 39.130 2.41 0.00 44.42 4.94
387 398 5.130350 AGAAATGGAAAACTTTCTCCACGA 58.870 37.500 2.41 0.00 44.42 4.35
388 399 5.239525 AGAAATGGAAAACTTTCTCCACGAG 59.760 40.000 2.41 0.00 44.42 4.18
407 418 6.442952 CACGAGTAAATCCCACATTGAAAAA 58.557 36.000 0.00 0.00 0.00 1.94
423 434 7.934578 CATTGAAAAATGACACTGGCAACCAG 61.935 42.308 12.08 12.08 43.39 4.00
463 474 0.107214 CCACCCACTGCGTCCATTAT 60.107 55.000 0.00 0.00 0.00 1.28
489 2439 2.159599 ACTTAACACCGATCGACGACTC 60.160 50.000 18.66 0.00 45.77 3.36
492 2442 3.122971 ACCGATCGACGACTCGCA 61.123 61.111 18.66 0.00 45.77 5.10
498 2448 2.592623 ATCGACGACTCGCATTCGCA 62.593 55.000 0.00 0.00 40.24 5.10
518 2468 3.183754 CATCGAACGTGTGTAGCCATTA 58.816 45.455 0.00 0.00 0.00 1.90
523 2473 3.671008 ACGTGTGTAGCCATTACTCAA 57.329 42.857 0.00 0.00 37.47 3.02
531 2481 1.003118 AGCCATTACTCAAGTGCGGAA 59.997 47.619 0.00 0.00 0.00 4.30
561 2511 2.500442 CGCTACGCAAGAGCTCGTG 61.500 63.158 23.37 23.37 39.46 4.35
577 2527 1.520342 GTGGAGATCTGGCTCACGC 60.520 63.158 0.00 0.00 36.62 5.34
582 2532 3.706563 GATCTGGCTCACGCGCTCA 62.707 63.158 5.73 0.00 36.88 4.26
620 2574 2.733956 GTCCATCACAAGGGCCATAAA 58.266 47.619 6.18 0.00 0.00 1.40
621 2575 3.299503 GTCCATCACAAGGGCCATAAAT 58.700 45.455 6.18 0.00 0.00 1.40
622 2576 3.706086 GTCCATCACAAGGGCCATAAATT 59.294 43.478 6.18 0.00 0.00 1.82
623 2577 4.892934 GTCCATCACAAGGGCCATAAATTA 59.107 41.667 6.18 0.00 0.00 1.40
624 2578 5.539955 GTCCATCACAAGGGCCATAAATTAT 59.460 40.000 6.18 0.00 0.00 1.28
625 2579 6.041979 GTCCATCACAAGGGCCATAAATTATT 59.958 38.462 6.18 0.00 0.00 1.40
626 2580 6.614906 TCCATCACAAGGGCCATAAATTATTT 59.385 34.615 6.18 0.00 0.00 1.40
627 2581 7.127032 TCCATCACAAGGGCCATAAATTATTTT 59.873 33.333 6.18 0.00 0.00 1.82
628 2582 7.774625 CCATCACAAGGGCCATAAATTATTTTT 59.225 33.333 6.18 0.00 0.00 1.94
645 2599 3.719173 TTTTTGATGACAACGGTTCCC 57.281 42.857 0.00 0.00 35.63 3.97
646 2600 2.350057 TTTGATGACAACGGTTCCCA 57.650 45.000 0.00 0.00 35.63 4.37
647 2601 2.350057 TTGATGACAACGGTTCCCAA 57.650 45.000 0.00 0.00 0.00 4.12
648 2602 1.890876 TGATGACAACGGTTCCCAAG 58.109 50.000 0.00 0.00 0.00 3.61
649 2603 1.165270 GATGACAACGGTTCCCAAGG 58.835 55.000 0.00 0.00 0.00 3.61
650 2604 0.768622 ATGACAACGGTTCCCAAGGA 59.231 50.000 0.00 0.00 0.00 3.36
651 2605 0.179040 TGACAACGGTTCCCAAGGAC 60.179 55.000 0.00 0.00 0.00 3.85
652 2606 0.887836 GACAACGGTTCCCAAGGACC 60.888 60.000 0.00 0.00 0.00 4.46
653 2607 1.149627 CAACGGTTCCCAAGGACCA 59.850 57.895 0.00 0.00 0.00 4.02
654 2608 0.466555 CAACGGTTCCCAAGGACCAA 60.467 55.000 0.00 0.00 0.00 3.67
655 2609 0.179001 AACGGTTCCCAAGGACCAAG 60.179 55.000 0.00 0.00 0.00 3.61
674 2628 4.320861 CCAAGATTGACGCAAACCATTGTA 60.321 41.667 0.00 0.00 38.85 2.41
675 2629 5.218885 CAAGATTGACGCAAACCATTGTAA 58.781 37.500 0.00 0.00 38.85 2.41
676 2630 5.446143 AGATTGACGCAAACCATTGTAAA 57.554 34.783 0.00 0.00 38.85 2.01
677 2631 6.024552 AGATTGACGCAAACCATTGTAAAT 57.975 33.333 0.00 0.00 38.85 1.40
679 2633 7.771183 AGATTGACGCAAACCATTGTAAATAT 58.229 30.769 0.00 0.00 38.85 1.28
680 2634 7.701924 AGATTGACGCAAACCATTGTAAATATG 59.298 33.333 0.00 0.00 38.85 1.78
681 2635 6.260870 TGACGCAAACCATTGTAAATATGT 57.739 33.333 0.00 0.00 38.85 2.29
682 2636 7.379098 TGACGCAAACCATTGTAAATATGTA 57.621 32.000 0.00 0.00 38.85 2.29
722 2707 1.069906 CAGGAAAAAGAAGACACCGCG 60.070 52.381 0.00 0.00 0.00 6.46
729 2714 2.386661 AGAAGACACCGCGATTGATT 57.613 45.000 8.23 5.21 0.00 2.57
732 2717 1.369625 AGACACCGCGATTGATTTCC 58.630 50.000 8.23 0.00 0.00 3.13
734 2719 1.737793 GACACCGCGATTGATTTCCTT 59.262 47.619 8.23 0.00 0.00 3.36
735 2720 2.159382 ACACCGCGATTGATTTCCTTT 58.841 42.857 8.23 0.00 0.00 3.11
736 2721 2.161609 ACACCGCGATTGATTTCCTTTC 59.838 45.455 8.23 0.00 0.00 2.62
737 2722 2.161410 CACCGCGATTGATTTCCTTTCA 59.839 45.455 8.23 0.00 0.00 2.69
738 2723 3.016736 ACCGCGATTGATTTCCTTTCAT 58.983 40.909 8.23 0.00 0.00 2.57
739 2724 3.443681 ACCGCGATTGATTTCCTTTCATT 59.556 39.130 8.23 0.00 0.00 2.57
740 2725 4.082245 ACCGCGATTGATTTCCTTTCATTT 60.082 37.500 8.23 0.00 0.00 2.32
741 2726 4.500477 CCGCGATTGATTTCCTTTCATTTC 59.500 41.667 8.23 0.00 0.00 2.17
742 2727 4.500477 CGCGATTGATTTCCTTTCATTTCC 59.500 41.667 0.00 0.00 0.00 3.13
743 2728 4.805719 GCGATTGATTTCCTTTCATTTCCC 59.194 41.667 0.00 0.00 0.00 3.97
744 2729 5.624281 GCGATTGATTTCCTTTCATTTCCCA 60.624 40.000 0.00 0.00 0.00 4.37
745 2730 5.807011 CGATTGATTTCCTTTCATTTCCCAC 59.193 40.000 0.00 0.00 0.00 4.61
746 2731 5.482163 TTGATTTCCTTTCATTTCCCACC 57.518 39.130 0.00 0.00 0.00 4.61
747 2732 3.837731 TGATTTCCTTTCATTTCCCACCC 59.162 43.478 0.00 0.00 0.00 4.61
748 2733 1.917872 TTCCTTTCATTTCCCACCCG 58.082 50.000 0.00 0.00 0.00 5.28
749 2734 0.039035 TCCTTTCATTTCCCACCCGG 59.961 55.000 0.00 0.00 0.00 5.73
750 2735 1.604147 CCTTTCATTTCCCACCCGGC 61.604 60.000 0.00 0.00 0.00 6.13
751 2736 1.933115 CTTTCATTTCCCACCCGGCG 61.933 60.000 0.00 0.00 0.00 6.46
769 2754 3.680786 CGCCAGTCCACGAGTCCA 61.681 66.667 0.00 0.00 0.00 4.02
770 2755 2.048127 GCCAGTCCACGAGTCCAC 60.048 66.667 0.00 0.00 0.00 4.02
771 2756 2.258591 CCAGTCCACGAGTCCACG 59.741 66.667 0.00 0.00 39.31 4.94
772 2757 2.258591 CAGTCCACGAGTCCACGG 59.741 66.667 0.00 0.00 37.61 4.94
773 2758 2.989824 AGTCCACGAGTCCACGGG 60.990 66.667 0.00 0.00 37.61 5.28
774 2759 3.300765 GTCCACGAGTCCACGGGT 61.301 66.667 0.00 0.00 34.67 5.28
775 2760 2.987547 TCCACGAGTCCACGGGTC 60.988 66.667 0.00 0.00 34.67 4.46
776 2761 4.415332 CCACGAGTCCACGGGTCG 62.415 72.222 7.08 7.08 39.63 4.79
826 2821 3.782443 CCGGTCCCTCTTTCCCCG 61.782 72.222 0.00 0.00 38.39 5.73
865 2864 2.335369 CTCGTTCCTATCGCCCGG 59.665 66.667 0.00 0.00 0.00 5.73
1328 3370 4.208686 CCTCCAGGTACGAGCGCC 62.209 72.222 2.29 0.00 0.00 6.53
1329 3371 3.449227 CTCCAGGTACGAGCGCCA 61.449 66.667 2.29 0.00 0.00 5.69
1330 3372 2.992689 TCCAGGTACGAGCGCCAA 60.993 61.111 2.29 0.00 0.00 4.52
1331 3373 2.186903 CCAGGTACGAGCGCCAAT 59.813 61.111 2.29 0.00 0.00 3.16
1334 3376 1.518572 AGGTACGAGCGCCAATTCG 60.519 57.895 14.33 14.33 42.26 3.34
1343 3385 2.762360 CGCCAATTCGCCACTTCTA 58.238 52.632 0.00 0.00 0.00 2.10
1346 3388 2.565841 GCCAATTCGCCACTTCTATCT 58.434 47.619 0.00 0.00 0.00 1.98
1349 3391 3.432186 CCAATTCGCCACTTCTATCTCCA 60.432 47.826 0.00 0.00 0.00 3.86
1357 3407 3.505680 CCACTTCTATCTCCATCTCTCGG 59.494 52.174 0.00 0.00 0.00 4.63
1361 3411 0.609406 TATCTCCATCTCTCGGCCCG 60.609 60.000 0.00 0.00 0.00 6.13
1362 3412 3.610669 CTCCATCTCTCGGCCCGG 61.611 72.222 1.90 0.00 0.00 5.73
1401 3454 4.508128 TCGATTCGTGCCGGCCTC 62.508 66.667 26.77 16.35 0.00 4.70
1459 3519 0.035630 CTTGGGGGACTGAAGAGCTG 60.036 60.000 0.00 0.00 0.00 4.24
1463 3523 1.613630 GGGACTGAAGAGCTGGGGA 60.614 63.158 0.00 0.00 0.00 4.81
1533 3593 2.537560 GCTGCTGTGCCGCGATTAT 61.538 57.895 8.23 0.00 0.00 1.28
1539 3599 2.973224 GCTGTGCCGCGATTATAATTTG 59.027 45.455 8.23 0.00 0.00 2.32
1562 3622 4.028825 GCAAGGGGAGTTCCTAGTTAGTA 58.971 47.826 0.00 0.00 35.80 1.82
1563 3623 4.141981 GCAAGGGGAGTTCCTAGTTAGTAC 60.142 50.000 0.00 0.00 35.80 2.73
1564 3624 5.270794 CAAGGGGAGTTCCTAGTTAGTACT 58.729 45.833 0.00 0.00 35.80 2.73
1574 3634 9.933240 AGTTCCTAGTTAGTACTACCATTATGT 57.067 33.333 0.91 0.00 35.78 2.29
1606 3666 4.007644 GGTGCCCTTTGCCCAAGC 62.008 66.667 0.00 0.00 40.16 4.01
1671 3731 1.315257 ATCACCCACAGAATTGCGCC 61.315 55.000 4.18 0.00 0.00 6.53
1719 3801 8.485578 TTTTCCTTTGTCCATGGTTAACTAAT 57.514 30.769 12.58 0.00 0.00 1.73
1732 3814 2.907458 AACTAATGCCTGGGCTCTTT 57.093 45.000 13.05 6.70 42.51 2.52
1733 3815 2.907458 ACTAATGCCTGGGCTCTTTT 57.093 45.000 13.05 4.50 42.51 2.27
1736 3818 4.273318 ACTAATGCCTGGGCTCTTTTAAG 58.727 43.478 13.05 4.35 42.51 1.85
1781 3863 2.504367 GAACACCAGTGCTATTGTGGT 58.496 47.619 0.00 0.00 45.83 4.16
1790 3872 2.412089 GTGCTATTGTGGTTCGACTCAC 59.588 50.000 9.61 9.61 34.71 3.51
1796 3878 3.254470 TGTGGTTCGACTCACTTCAAA 57.746 42.857 15.50 0.00 35.15 2.69
1836 3918 4.677182 AGAATTTCAGTGGGGCTGTTATT 58.323 39.130 0.00 0.00 45.23 1.40
1837 3919 5.826643 AGAATTTCAGTGGGGCTGTTATTA 58.173 37.500 0.00 0.00 45.23 0.98
1838 3920 5.652452 AGAATTTCAGTGGGGCTGTTATTAC 59.348 40.000 0.00 0.00 45.23 1.89
1978 4086 3.254903 CCATCTGTCATGGCATAATGGTG 59.745 47.826 23.97 10.90 31.93 4.17
2221 4329 8.029642 AGATAAAGATAATATTTGTTCCCGCG 57.970 34.615 0.00 0.00 0.00 6.46
2449 4557 6.127451 TGTTCCGTTAGTGATACTCATCATGT 60.127 38.462 0.00 0.00 43.03 3.21
2472 4580 6.128117 TGTTTGTTCACAGTTAGAACCACTTC 60.128 38.462 0.00 0.00 43.57 3.01
2478 4586 7.770366 TCACAGTTAGAACCACTTCTATGTA 57.230 36.000 0.00 0.00 38.54 2.29
2612 4722 5.744171 TCTCCATGCAAATCTAGCAAAGTA 58.256 37.500 0.00 0.00 46.27 2.24
2635 4745 8.301002 AGTAAGTTTCTAAGACAGTCATCAGAC 58.699 37.037 2.66 0.00 45.31 3.51
2742 4852 7.502226 ACAGTAATCAGACTTTCCAATTGTTCA 59.498 33.333 4.43 0.00 0.00 3.18
2792 4902 4.161333 GCTGTACTTATTTGCTGCTTGTG 58.839 43.478 0.00 0.00 0.00 3.33
2795 4905 4.824537 TGTACTTATTTGCTGCTTGTGGAA 59.175 37.500 0.00 0.00 0.00 3.53
2856 4966 5.337813 GGATCGGTTAGGGACTTTGTTTAGA 60.338 44.000 0.00 0.00 41.75 2.10
3075 5188 6.040616 AGTCCAAGGTAAATCGGTACTCATAG 59.959 42.308 0.00 0.00 0.00 2.23
3178 5291 8.902806 TGGTCTTATGTGATTCAATGGATAAAC 58.097 33.333 0.00 0.00 0.00 2.01
3179 5292 8.902806 GGTCTTATGTGATTCAATGGATAAACA 58.097 33.333 0.00 0.00 0.00 2.83
3226 5339 9.875708 TGCTATAATATTTTTCCCCATTGTAGT 57.124 29.630 0.00 0.00 0.00 2.73
3235 5352 2.976185 TCCCCATTGTAGTCAGTCACAA 59.024 45.455 0.00 0.00 38.89 3.33
3520 5637 0.183492 AGTGAGTTTTCCAGCAGCCA 59.817 50.000 0.00 0.00 0.00 4.75
3581 5698 7.684428 GCCTGAGTTATCCTGTTTTCAAACTTT 60.684 37.037 4.14 0.00 39.59 2.66
3722 5842 8.981659 TGTGATAGTTTCTGATATCTCTTTCCA 58.018 33.333 3.98 0.00 31.07 3.53
3858 5978 5.803855 TCTCACCTATATAGAGGAAGGGGAT 59.196 44.000 20.31 0.00 40.69 3.85
3951 6071 2.594365 GATTTGCTGGGGCTGGGGAT 62.594 60.000 0.00 0.00 39.59 3.85
4114 6237 4.392445 TGTACCCGGAATTTTGTGATTACG 59.608 41.667 0.73 0.00 41.81 3.18
4168 6291 1.144708 TGGCAAATGTTGGACCTCAGA 59.855 47.619 0.00 0.00 0.00 3.27
4169 6292 1.815003 GGCAAATGTTGGACCTCAGAG 59.185 52.381 0.00 0.00 0.00 3.35
4233 6356 2.289945 ACAAGACTGCAAGAGGTCCATC 60.290 50.000 0.52 0.00 37.43 3.51
4248 6371 0.179037 CCATCGACATGCTGGTCCAT 60.179 55.000 0.00 0.00 34.24 3.41
4250 6373 1.600957 CATCGACATGCTGGTCCATTC 59.399 52.381 0.00 0.00 34.24 2.67
4252 6375 0.392863 CGACATGCTGGTCCATTCCA 60.393 55.000 0.00 0.00 34.24 3.53
4255 6378 1.006281 ACATGCTGGTCCATTCCATGT 59.994 47.619 19.44 19.44 40.99 3.21
4265 6389 3.989817 GTCCATTCCATGTTTGCAAGTTC 59.010 43.478 0.00 0.00 0.00 3.01
4266 6390 2.988493 CCATTCCATGTTTGCAAGTTCG 59.012 45.455 0.00 0.00 0.00 3.95
4269 6393 1.001487 TCCATGTTTGCAAGTTCGCAG 60.001 47.619 0.00 0.00 44.14 5.18
4274 6398 2.111756 GTTTGCAAGTTCGCAGAAGTG 58.888 47.619 0.00 0.49 45.90 3.16
4293 6417 7.225538 CAGAAGTGTATCATTACATCAAGGGTC 59.774 40.741 0.00 0.00 40.35 4.46
4298 6428 3.554934 TCATTACATCAAGGGTCATGGC 58.445 45.455 0.00 0.00 0.00 4.40
4317 6447 1.604693 GCCATTGCCTATTGCTGATGC 60.605 52.381 0.00 0.00 42.00 3.91
4344 6474 6.414732 TCTGTTCGATTGTCTTTGGGATAAT 58.585 36.000 0.00 0.00 38.24 1.28
4347 6477 7.106890 TGTTCGATTGTCTTTGGGATAATACA 58.893 34.615 0.00 0.00 36.20 2.29
4351 6481 6.986817 CGATTGTCTTTGGGATAATACAGAGT 59.013 38.462 0.00 0.00 36.20 3.24
4360 6490 5.487488 TGGGATAATACAGAGTTTGGTGTCT 59.513 40.000 0.00 0.00 0.00 3.41
4362 6492 7.347222 TGGGATAATACAGAGTTTGGTGTCTAT 59.653 37.037 0.00 0.00 0.00 1.98
4364 6494 9.694137 GGATAATACAGAGTTTGGTGTCTATAC 57.306 37.037 0.00 0.00 0.00 1.47
4370 6500 8.079211 ACAGAGTTTGGTGTCTATACATATGT 57.921 34.615 13.93 13.93 38.08 2.29
4371 6501 8.540388 ACAGAGTTTGGTGTCTATACATATGTT 58.460 33.333 14.77 4.83 38.08 2.71
4372 6502 9.383519 CAGAGTTTGGTGTCTATACATATGTTT 57.616 33.333 14.77 8.94 38.08 2.83
4373 6503 9.959721 AGAGTTTGGTGTCTATACATATGTTTT 57.040 29.630 14.77 4.99 38.08 2.43
4379 6509 6.344800 GTGTCTATACATATGTTTTCGTGCG 58.655 40.000 14.77 0.00 38.08 5.34
4402 6532 4.369182 ACTCGGTCGATCCATATGTTTTC 58.631 43.478 1.24 0.00 35.57 2.29
4405 6535 3.131396 GGTCGATCCATATGTTTTCGCT 58.869 45.455 11.97 0.00 35.97 4.93
4407 6537 4.748102 GGTCGATCCATATGTTTTCGCTAA 59.252 41.667 11.97 0.00 35.97 3.09
4408 6538 5.235616 GGTCGATCCATATGTTTTCGCTAAA 59.764 40.000 11.97 0.00 35.97 1.85
4410 6540 7.010023 GTCGATCCATATGTTTTCGCTAAATC 58.990 38.462 11.97 0.00 0.00 2.17
4411 6541 6.147164 TCGATCCATATGTTTTCGCTAAATCC 59.853 38.462 11.97 0.00 0.00 3.01
4413 6543 6.861065 TCCATATGTTTTCGCTAAATCCTC 57.139 37.500 1.24 0.00 0.00 3.71
4415 6545 5.530915 CCATATGTTTTCGCTAAATCCTCCA 59.469 40.000 1.24 0.00 0.00 3.86
4417 6547 4.963276 TGTTTTCGCTAAATCCTCCATG 57.037 40.909 0.00 0.00 0.00 3.66
4418 6548 4.331968 TGTTTTCGCTAAATCCTCCATGT 58.668 39.130 0.00 0.00 0.00 3.21
4419 6549 4.394920 TGTTTTCGCTAAATCCTCCATGTC 59.605 41.667 0.00 0.00 0.00 3.06
4420 6550 2.509052 TCGCTAAATCCTCCATGTCG 57.491 50.000 0.00 0.00 0.00 4.35
4421 6551 1.754803 TCGCTAAATCCTCCATGTCGT 59.245 47.619 0.00 0.00 0.00 4.34
4422 6552 2.953648 TCGCTAAATCCTCCATGTCGTA 59.046 45.455 0.00 0.00 0.00 3.43
4423 6553 3.382227 TCGCTAAATCCTCCATGTCGTAA 59.618 43.478 0.00 0.00 0.00 3.18
4424 6554 3.736252 CGCTAAATCCTCCATGTCGTAAG 59.264 47.826 0.00 0.00 0.00 2.34
4452 6582 6.174720 AGGTTCAAAACATAGAGACTGACA 57.825 37.500 0.00 0.00 0.00 3.58
4453 6583 6.591935 AGGTTCAAAACATAGAGACTGACAA 58.408 36.000 0.00 0.00 0.00 3.18
4454 6584 7.054124 AGGTTCAAAACATAGAGACTGACAAA 58.946 34.615 0.00 0.00 0.00 2.83
4455 6585 7.556275 AGGTTCAAAACATAGAGACTGACAAAA 59.444 33.333 0.00 0.00 0.00 2.44
4456 6586 8.188139 GGTTCAAAACATAGAGACTGACAAAAA 58.812 33.333 0.00 0.00 0.00 1.94
4576 6706 2.584791 CTACTGCCAACAAATTCGTGC 58.415 47.619 0.00 0.00 0.00 5.34
4636 6766 5.070001 CAGGGTAACTTCAGTTCCATGAAA 58.930 41.667 13.24 0.00 38.66 2.69
4637 6767 5.048713 CAGGGTAACTTCAGTTCCATGAAAC 60.049 44.000 13.24 0.00 38.66 2.78
4642 6774 0.037590 TCAGTTCCATGAAACCCCCG 59.962 55.000 0.00 0.00 0.00 5.73
4670 6802 2.283604 TACTGGGCCACTCAGCGA 60.284 61.111 0.00 0.00 35.78 4.93
4672 6804 0.396556 TACTGGGCCACTCAGCGATA 60.397 55.000 0.00 0.00 35.78 2.92
4673 6805 1.264749 ACTGGGCCACTCAGCGATAA 61.265 55.000 0.00 0.00 35.78 1.75
4674 6806 0.531532 CTGGGCCACTCAGCGATAAG 60.532 60.000 0.00 0.00 0.00 1.73
4678 6810 1.676014 GGCCACTCAGCGATAAGTTGT 60.676 52.381 0.00 0.00 32.51 3.32
4679 6811 1.661112 GCCACTCAGCGATAAGTTGTC 59.339 52.381 0.00 0.00 32.51 3.18
4680 6812 2.930887 GCCACTCAGCGATAAGTTGTCA 60.931 50.000 0.30 0.00 32.51 3.58
4681 6813 3.325870 CCACTCAGCGATAAGTTGTCAA 58.674 45.455 0.30 0.00 32.51 3.18
4682 6814 3.123621 CCACTCAGCGATAAGTTGTCAAC 59.876 47.826 7.68 7.68 32.51 3.18
4718 6879 2.881403 GCCTCTCCAATTGACCACACAT 60.881 50.000 7.12 0.00 0.00 3.21
4757 6962 0.240145 GCCTGTGGTTCGTTTTAGGC 59.760 55.000 0.00 0.00 43.20 3.93
4758 6963 0.879090 CCTGTGGTTCGTTTTAGGCC 59.121 55.000 0.00 0.00 0.00 5.19
4760 6965 1.804748 CTGTGGTTCGTTTTAGGCCTC 59.195 52.381 9.68 0.00 0.00 4.70
4761 6966 1.418637 TGTGGTTCGTTTTAGGCCTCT 59.581 47.619 9.68 0.00 0.00 3.69
4762 6967 1.804748 GTGGTTCGTTTTAGGCCTCTG 59.195 52.381 9.68 0.00 0.00 3.35
4763 6968 1.418637 TGGTTCGTTTTAGGCCTCTGT 59.581 47.619 9.68 0.00 0.00 3.41
4770 6982 4.062991 CGTTTTAGGCCTCTGTTTACAGT 58.937 43.478 9.68 0.00 44.12 3.55
4849 7070 2.046314 GAGCTTGTTGGGCGCCTA 60.046 61.111 28.56 19.98 34.52 3.93
4850 7071 1.674322 GAGCTTGTTGGGCGCCTAA 60.674 57.895 28.56 25.60 34.52 2.69
4858 7079 0.955905 TTGGGCGCCTAACTGTTTTC 59.044 50.000 28.56 5.64 0.00 2.29
4861 7082 1.611977 GGGCGCCTAACTGTTTTCTTT 59.388 47.619 28.56 0.00 0.00 2.52
4863 7084 3.305964 GGCGCCTAACTGTTTTCTTTTC 58.694 45.455 22.15 0.00 0.00 2.29
4864 7085 3.004419 GGCGCCTAACTGTTTTCTTTTCT 59.996 43.478 22.15 0.00 0.00 2.52
4865 7086 4.499188 GGCGCCTAACTGTTTTCTTTTCTT 60.499 41.667 22.15 0.00 0.00 2.52
4866 7087 5.041287 GCGCCTAACTGTTTTCTTTTCTTT 58.959 37.500 0.00 0.00 0.00 2.52
4937 7159 8.677148 AGTATAATGTATTTGTAAGCCCTGTG 57.323 34.615 0.00 0.00 0.00 3.66
4938 7160 6.959639 ATAATGTATTTGTAAGCCCTGTGG 57.040 37.500 0.00 0.00 0.00 4.17
4939 7161 4.584638 ATGTATTTGTAAGCCCTGTGGA 57.415 40.909 0.00 0.00 0.00 4.02
4940 7162 4.374689 TGTATTTGTAAGCCCTGTGGAA 57.625 40.909 0.00 0.00 0.00 3.53
4941 7163 4.730966 TGTATTTGTAAGCCCTGTGGAAA 58.269 39.130 0.00 0.00 0.00 3.13
4942 7164 5.141182 TGTATTTGTAAGCCCTGTGGAAAA 58.859 37.500 0.00 0.00 0.00 2.29
4943 7165 5.777732 TGTATTTGTAAGCCCTGTGGAAAAT 59.222 36.000 0.00 0.00 0.00 1.82
4944 7166 4.599047 TTTGTAAGCCCTGTGGAAAATG 57.401 40.909 0.00 0.00 0.00 2.32
4945 7167 3.517296 TGTAAGCCCTGTGGAAAATGA 57.483 42.857 0.00 0.00 0.00 2.57
4946 7168 3.838565 TGTAAGCCCTGTGGAAAATGAA 58.161 40.909 0.00 0.00 0.00 2.57
4947 7169 3.572255 TGTAAGCCCTGTGGAAAATGAAC 59.428 43.478 0.00 0.00 0.00 3.18
4948 7170 2.380064 AGCCCTGTGGAAAATGAACA 57.620 45.000 0.00 0.00 0.00 3.18
4949 7171 2.676748 AGCCCTGTGGAAAATGAACAA 58.323 42.857 0.00 0.00 0.00 2.83
4950 7172 3.037549 AGCCCTGTGGAAAATGAACAAA 58.962 40.909 0.00 0.00 0.00 2.83
4951 7173 3.647590 AGCCCTGTGGAAAATGAACAAAT 59.352 39.130 0.00 0.00 0.00 2.32
4952 7174 4.102996 AGCCCTGTGGAAAATGAACAAATT 59.897 37.500 0.00 0.00 0.00 1.82
4953 7175 5.306678 AGCCCTGTGGAAAATGAACAAATTA 59.693 36.000 0.00 0.00 0.00 1.40
4954 7176 5.994668 GCCCTGTGGAAAATGAACAAATTAA 59.005 36.000 0.00 0.00 0.00 1.40
4955 7177 6.073276 GCCCTGTGGAAAATGAACAAATTAAC 60.073 38.462 0.00 0.00 0.00 2.01
4956 7178 7.216494 CCCTGTGGAAAATGAACAAATTAACT 58.784 34.615 0.00 0.00 0.00 2.24
4957 7179 7.171337 CCCTGTGGAAAATGAACAAATTAACTG 59.829 37.037 0.00 0.00 0.00 3.16
4958 7180 7.307337 CCTGTGGAAAATGAACAAATTAACTGC 60.307 37.037 0.00 0.00 0.00 4.40
4959 7181 7.044181 TGTGGAAAATGAACAAATTAACTGCA 58.956 30.769 0.00 0.00 0.00 4.41
4960 7182 7.010923 TGTGGAAAATGAACAAATTAACTGCAC 59.989 33.333 0.00 0.00 0.00 4.57
4961 7183 7.010923 GTGGAAAATGAACAAATTAACTGCACA 59.989 33.333 0.00 0.00 0.00 4.57
4962 7184 7.550551 TGGAAAATGAACAAATTAACTGCACAA 59.449 29.630 0.00 0.00 0.00 3.33
4963 7185 8.394121 GGAAAATGAACAAATTAACTGCACAAA 58.606 29.630 0.00 0.00 0.00 2.83
4964 7186 9.766277 GAAAATGAACAAATTAACTGCACAAAA 57.234 25.926 0.00 0.00 0.00 2.44
4989 7211 9.739276 AAAAAGGAATCAATTTTTAATCTCCCC 57.261 29.630 6.43 0.00 36.96 4.81
4990 7212 7.437713 AAGGAATCAATTTTTAATCTCCCCC 57.562 36.000 0.00 0.00 0.00 5.40
4991 7213 6.511208 AGGAATCAATTTTTAATCTCCCCCA 58.489 36.000 0.00 0.00 0.00 4.96
4992 7214 6.965272 AGGAATCAATTTTTAATCTCCCCCAA 59.035 34.615 0.00 0.00 0.00 4.12
4993 7215 7.628910 AGGAATCAATTTTTAATCTCCCCCAAT 59.371 33.333 0.00 0.00 0.00 3.16
4994 7216 8.274322 GGAATCAATTTTTAATCTCCCCCAATT 58.726 33.333 0.00 0.00 0.00 2.32
4995 7217 9.685276 GAATCAATTTTTAATCTCCCCCAATTT 57.315 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.125552 GCCCTTTTTGCATCGGCC 60.126 61.111 0.00 0.00 40.13 6.13
7 8 1.159285 GCCTTTGCCCTTTTTGCATC 58.841 50.000 0.00 0.00 38.76 3.91
12 13 1.451504 GCCTGCCTTTGCCCTTTTT 59.548 52.632 0.00 0.00 36.33 1.94
40 41 2.408241 CCTCCTCGTCCACCGACTC 61.408 68.421 0.00 0.00 41.60 3.36
53 54 3.966930 GACTCGCTCCCACCCTCCT 62.967 68.421 0.00 0.00 0.00 3.69
106 107 0.042535 AATGTGTCGTTGTTGTCGCG 60.043 50.000 0.00 0.00 0.00 5.87
117 118 2.539547 GCAATCCGATCCAAATGTGTCG 60.540 50.000 0.00 0.00 0.00 4.35
119 120 1.750778 GGCAATCCGATCCAAATGTGT 59.249 47.619 0.00 0.00 0.00 3.72
138 139 0.893270 TGCAAACATCGGGGTCAAGG 60.893 55.000 0.00 0.00 0.00 3.61
140 141 1.175983 GGTGCAAACATCGGGGTCAA 61.176 55.000 0.00 0.00 0.00 3.18
147 148 1.086696 CCTACCAGGTGCAAACATCG 58.913 55.000 0.76 0.00 29.66 3.84
159 160 4.814294 GTCGCACGCCCCTACCAG 62.814 72.222 0.00 0.00 0.00 4.00
170 171 3.891586 TTCTCTCACGCCGTCGCAC 62.892 63.158 0.00 0.00 39.84 5.34
171 172 2.486636 AATTCTCTCACGCCGTCGCA 62.487 55.000 0.00 0.00 39.84 5.10
184 185 2.617774 GCCTCTCTTGCATCCAATTCTC 59.382 50.000 0.00 0.00 0.00 2.87
189 190 0.107993 CTCGCCTCTCTTGCATCCAA 60.108 55.000 0.00 0.00 0.00 3.53
197 198 2.762043 GCCCTCCTCGCCTCTCTT 60.762 66.667 0.00 0.00 0.00 2.85
198 199 3.387609 ATGCCCTCCTCGCCTCTCT 62.388 63.158 0.00 0.00 0.00 3.10
202 203 2.688666 TTCATGCCCTCCTCGCCT 60.689 61.111 0.00 0.00 0.00 5.52
245 246 2.954868 CCGCTCACGTACATCGCC 60.955 66.667 0.00 0.00 44.19 5.54
248 249 2.954868 CGCCCGCTCACGTACATC 60.955 66.667 0.00 0.00 37.70 3.06
249 250 3.291101 AACGCCCGCTCACGTACAT 62.291 57.895 0.00 0.00 42.68 2.29
250 251 3.980989 AACGCCCGCTCACGTACA 61.981 61.111 0.00 0.00 42.68 2.90
268 276 1.293924 TAGTACTACACCGCTCTCGC 58.706 55.000 0.00 0.00 0.00 5.03
270 278 7.721286 TTTACTATAGTACTACACCGCTCTC 57.279 40.000 12.25 0.00 0.00 3.20
287 295 8.793592 GTTTCTCCATGGTGAAAGTTTTACTAT 58.206 33.333 32.23 6.97 37.98 2.12
305 316 8.477419 AACTAAAGATTTCCATTGTTTCTCCA 57.523 30.769 0.00 0.00 0.00 3.86
307 318 9.196552 CCAAACTAAAGATTTCCATTGTTTCTC 57.803 33.333 0.00 0.00 0.00 2.87
312 323 8.706322 AGTACCAAACTAAAGATTTCCATTGT 57.294 30.769 0.00 0.00 36.36 2.71
365 376 5.008712 ACTCGTGGAGAAAGTTTTCCATTTC 59.991 40.000 17.13 8.31 44.74 2.17
371 382 6.348295 GGGATTTACTCGTGGAGAAAGTTTTC 60.348 42.308 0.00 0.00 37.45 2.29
377 388 3.325425 TGTGGGATTTACTCGTGGAGAAA 59.675 43.478 0.00 0.00 33.32 2.52
378 389 2.901192 TGTGGGATTTACTCGTGGAGAA 59.099 45.455 0.00 0.00 33.32 2.87
379 390 2.531771 TGTGGGATTTACTCGTGGAGA 58.468 47.619 0.00 0.00 33.32 3.71
380 391 3.543680 ATGTGGGATTTACTCGTGGAG 57.456 47.619 0.00 0.00 35.52 3.86
381 392 3.262151 TCAATGTGGGATTTACTCGTGGA 59.738 43.478 0.00 0.00 0.00 4.02
382 393 3.605634 TCAATGTGGGATTTACTCGTGG 58.394 45.455 0.00 0.00 0.00 4.94
383 394 5.621197 TTTCAATGTGGGATTTACTCGTG 57.379 39.130 0.00 0.00 0.00 4.35
384 395 6.642707 TTTTTCAATGTGGGATTTACTCGT 57.357 33.333 0.00 0.00 0.00 4.18
385 396 7.273381 GTCATTTTTCAATGTGGGATTTACTCG 59.727 37.037 0.00 0.00 40.78 4.18
386 397 8.087750 TGTCATTTTTCAATGTGGGATTTACTC 58.912 33.333 0.00 0.00 40.78 2.59
387 398 7.872483 GTGTCATTTTTCAATGTGGGATTTACT 59.128 33.333 0.00 0.00 40.78 2.24
388 399 7.872483 AGTGTCATTTTTCAATGTGGGATTTAC 59.128 33.333 0.00 0.00 40.78 2.01
423 434 2.438434 CCTCCCGTTGTGCCATCC 60.438 66.667 0.00 0.00 0.00 3.51
424 435 1.450312 CTCCTCCCGTTGTGCCATC 60.450 63.158 0.00 0.00 0.00 3.51
463 474 5.965334 GTCGTCGATCGGTGTTAAGTAATAA 59.035 40.000 16.41 0.00 40.32 1.40
498 2448 2.380084 AATGGCTACACACGTTCGAT 57.620 45.000 0.00 0.00 0.00 3.59
503 2453 3.006537 ACTTGAGTAATGGCTACACACGT 59.993 43.478 0.00 0.00 31.71 4.49
600 2554 2.435372 TTATGGCCCTTGTGATGGAC 57.565 50.000 0.00 0.00 0.00 4.02
625 2579 3.719173 GGGAACCGTTGTCATCAAAAA 57.281 42.857 0.00 0.00 40.86 1.94
640 2594 2.820197 GTCAATCTTGGTCCTTGGGAAC 59.180 50.000 0.00 0.00 40.41 3.62
641 2595 2.552155 CGTCAATCTTGGTCCTTGGGAA 60.552 50.000 0.00 0.00 31.38 3.97
642 2596 1.003118 CGTCAATCTTGGTCCTTGGGA 59.997 52.381 0.00 0.00 0.00 4.37
643 2597 1.453155 CGTCAATCTTGGTCCTTGGG 58.547 55.000 0.00 0.00 0.00 4.12
644 2598 0.804989 GCGTCAATCTTGGTCCTTGG 59.195 55.000 0.00 0.00 0.00 3.61
645 2599 1.522668 TGCGTCAATCTTGGTCCTTG 58.477 50.000 0.00 0.00 0.00 3.61
646 2600 2.270352 TTGCGTCAATCTTGGTCCTT 57.730 45.000 0.00 0.00 0.00 3.36
647 2601 1.880027 GTTTGCGTCAATCTTGGTCCT 59.120 47.619 0.00 0.00 0.00 3.85
648 2602 1.068541 GGTTTGCGTCAATCTTGGTCC 60.069 52.381 0.00 0.00 0.00 4.46
649 2603 1.606668 TGGTTTGCGTCAATCTTGGTC 59.393 47.619 0.00 0.00 0.00 4.02
650 2604 1.686355 TGGTTTGCGTCAATCTTGGT 58.314 45.000 0.00 0.00 0.00 3.67
651 2605 2.988493 CAATGGTTTGCGTCAATCTTGG 59.012 45.455 0.00 0.00 0.00 3.61
652 2606 3.641648 ACAATGGTTTGCGTCAATCTTG 58.358 40.909 0.00 0.00 36.22 3.02
653 2607 5.446143 TTACAATGGTTTGCGTCAATCTT 57.554 34.783 0.00 0.00 36.22 2.40
654 2608 5.446143 TTTACAATGGTTTGCGTCAATCT 57.554 34.783 0.00 0.00 36.22 2.40
655 2609 7.487829 ACATATTTACAATGGTTTGCGTCAATC 59.512 33.333 0.00 0.00 36.22 2.67
674 2628 0.925466 GTGACGCGCGGTACATATTT 59.075 50.000 35.22 9.48 0.00 1.40
675 2629 1.204228 CGTGACGCGCGGTACATATT 61.204 55.000 35.22 10.37 33.47 1.28
676 2630 1.656263 CGTGACGCGCGGTACATAT 60.656 57.895 35.22 11.27 33.47 1.78
677 2631 2.277437 CGTGACGCGCGGTACATA 60.277 61.111 35.22 10.24 33.47 2.29
722 2707 6.108687 GGTGGGAAATGAAAGGAAATCAATC 58.891 40.000 0.00 0.00 0.00 2.67
729 2714 1.549037 CCGGGTGGGAAATGAAAGGAA 60.549 52.381 0.00 0.00 38.47 3.36
732 2717 1.890174 GCCGGGTGGGAAATGAAAG 59.110 57.895 2.18 0.00 38.47 2.62
734 2719 2.360600 CGCCGGGTGGGAAATGAA 60.361 61.111 2.18 0.00 38.47 2.57
752 2737 3.680786 TGGACTCGTGGACTGGCG 61.681 66.667 0.00 0.00 0.00 5.69
753 2738 2.048127 GTGGACTCGTGGACTGGC 60.048 66.667 0.00 0.00 0.00 4.85
754 2739 2.258591 CGTGGACTCGTGGACTGG 59.741 66.667 0.00 0.00 0.00 4.00
755 2740 2.258591 CCGTGGACTCGTGGACTG 59.741 66.667 0.00 0.00 0.00 3.51
756 2741 2.989824 CCCGTGGACTCGTGGACT 60.990 66.667 0.00 0.00 0.00 3.85
757 2742 3.278592 GACCCGTGGACTCGTGGAC 62.279 68.421 7.81 0.59 0.00 4.02
758 2743 2.987547 GACCCGTGGACTCGTGGA 60.988 66.667 7.81 0.00 0.00 4.02
759 2744 4.415332 CGACCCGTGGACTCGTGG 62.415 72.222 0.00 0.00 0.00 4.94
809 2794 3.782443 CGGGGAAAGAGGGACCGG 61.782 72.222 0.00 0.00 40.79 5.28
813 2798 1.980772 GACGACGGGGAAAGAGGGA 60.981 63.158 0.00 0.00 0.00 4.20
815 2800 1.080025 GTGACGACGGGGAAAGAGG 60.080 63.158 0.00 0.00 0.00 3.69
840 2835 1.330234 GATAGGAACGAGGAGGGGAC 58.670 60.000 0.00 0.00 0.00 4.46
841 2836 0.178998 CGATAGGAACGAGGAGGGGA 60.179 60.000 0.00 0.00 0.00 4.81
845 2844 1.660917 GGGCGATAGGAACGAGGAG 59.339 63.158 0.00 0.00 0.00 3.69
865 2864 4.554036 GGAGCGGTGGAGATGGGC 62.554 72.222 0.00 0.00 0.00 5.36
880 2879 4.201679 CGGTAGCGATGCGGTGGA 62.202 66.667 9.07 0.00 38.30 4.02
910 2909 3.845259 TGAGGGTCGGTATGGCGC 61.845 66.667 0.00 0.00 0.00 6.53
914 2913 1.382695 AGGGGTGAGGGTCGGTATG 60.383 63.158 0.00 0.00 0.00 2.39
915 2914 1.075450 GAGGGGTGAGGGTCGGTAT 60.075 63.158 0.00 0.00 0.00 2.73
916 2915 2.361771 GAGGGGTGAGGGTCGGTA 59.638 66.667 0.00 0.00 0.00 4.02
936 2945 1.621347 GGGTGGGGTTTAAATGGAGGG 60.621 57.143 0.00 0.00 0.00 4.30
1328 3370 3.797039 TGGAGATAGAAGTGGCGAATTG 58.203 45.455 0.00 0.00 0.00 2.32
1329 3371 4.346418 AGATGGAGATAGAAGTGGCGAATT 59.654 41.667 0.00 0.00 0.00 2.17
1330 3372 3.900601 AGATGGAGATAGAAGTGGCGAAT 59.099 43.478 0.00 0.00 0.00 3.34
1331 3373 3.300388 AGATGGAGATAGAAGTGGCGAA 58.700 45.455 0.00 0.00 0.00 4.70
1334 3376 3.057596 CGAGAGATGGAGATAGAAGTGGC 60.058 52.174 0.00 0.00 0.00 5.01
1335 3377 3.505680 CCGAGAGATGGAGATAGAAGTGG 59.494 52.174 0.00 0.00 0.00 4.00
1338 3380 2.491693 GGCCGAGAGATGGAGATAGAAG 59.508 54.545 0.00 0.00 0.00 2.85
1343 3385 1.905843 CGGGCCGAGAGATGGAGAT 60.906 63.158 24.41 0.00 0.00 2.75
1349 3391 4.924187 CCTCCCGGGCCGAGAGAT 62.924 72.222 35.25 0.00 0.00 2.75
1361 3411 1.839296 CCTTCCCGGATCTCCTCCC 60.839 68.421 0.73 0.00 41.49 4.30
1362 3412 0.398664 TTCCTTCCCGGATCTCCTCC 60.399 60.000 0.73 0.00 42.70 4.30
1401 3454 2.011947 TCATTTCGCAATCCAGCAGAG 58.988 47.619 0.00 0.00 0.00 3.35
1448 3504 0.539051 CGAATCCCCAGCTCTTCAGT 59.461 55.000 0.00 0.00 0.00 3.41
1451 3507 0.761802 ATCCGAATCCCCAGCTCTTC 59.238 55.000 0.00 0.00 0.00 2.87
1459 3519 3.251004 CGAAAATTCAGATCCGAATCCCC 59.749 47.826 4.65 0.00 34.49 4.81
1463 3523 5.360591 AGCTACGAAAATTCAGATCCGAAT 58.639 37.500 0.00 0.00 37.20 3.34
1533 3593 2.381961 AGGAACTCCCCTTGCCAAATTA 59.618 45.455 0.00 0.00 36.42 1.40
1539 3599 0.992695 AACTAGGAACTCCCCTTGCC 59.007 55.000 0.00 0.00 41.75 4.52
1574 3634 0.388659 GCACCCAGCACATGTTTGAA 59.611 50.000 0.00 0.00 44.79 2.69
1671 3731 1.979469 CACACTAGTTTCGAGCGTGAG 59.021 52.381 0.00 0.00 0.00 3.51
1719 3801 1.271926 GGACTTAAAAGAGCCCAGGCA 60.272 52.381 12.03 0.00 44.88 4.75
1732 3814 5.012046 TCAGATCTTTGAGCACAGGACTTAA 59.988 40.000 0.00 0.00 0.00 1.85
1733 3815 4.528206 TCAGATCTTTGAGCACAGGACTTA 59.472 41.667 0.00 0.00 0.00 2.24
1736 3818 3.325293 TCAGATCTTTGAGCACAGGAC 57.675 47.619 0.00 0.00 0.00 3.85
1781 3863 6.401047 CGCAGAATTATTTGAAGTGAGTCGAA 60.401 38.462 0.00 0.00 0.00 3.71
1790 3872 4.100529 CCAGCACGCAGAATTATTTGAAG 58.899 43.478 0.00 0.00 0.00 3.02
1796 3878 3.266510 TCTTCCAGCACGCAGAATTAT 57.733 42.857 0.00 0.00 0.00 1.28
1836 3918 2.167693 AGCAAATCCACGAGATTCGGTA 59.832 45.455 3.37 0.00 44.75 4.02
1837 3919 1.066143 AGCAAATCCACGAGATTCGGT 60.066 47.619 3.37 0.00 44.75 4.69
1838 3920 1.656652 AGCAAATCCACGAGATTCGG 58.343 50.000 3.37 4.04 44.75 4.30
1935 4017 2.863401 TCATCCAGGACGTTACATCG 57.137 50.000 0.00 0.00 0.00 3.84
1936 4018 3.069586 TGGATCATCCAGGACGTTACATC 59.930 47.826 0.66 0.00 42.67 3.06
1978 4086 0.808847 GACCGTTATCGACAAGCCCC 60.809 60.000 0.00 0.00 39.71 5.80
2221 4329 5.649831 ACTAAATCATGCTTCAAGGAGAACC 59.350 40.000 0.00 0.00 31.61 3.62
2353 4461 8.506168 TTCCAATAACTTCACCATTAGCTAAG 57.494 34.615 12.54 1.71 0.00 2.18
2449 4557 6.177610 AGAAGTGGTTCTAACTGTGAACAAA 58.822 36.000 11.59 0.00 41.54 2.83
2669 4779 9.241317 GATTTGCATGGAGAAGTACATATTTTG 57.759 33.333 0.00 0.00 0.00 2.44
2742 4852 8.752005 ACCACATCAAATAAAGTATACTGCAT 57.248 30.769 6.06 0.00 0.00 3.96
2792 4902 6.319911 GGATCATTAGGGCTGCTATTAATTCC 59.680 42.308 0.00 3.71 0.00 3.01
2795 4905 6.392911 TGGATCATTAGGGCTGCTATTAAT 57.607 37.500 0.00 0.00 0.00 1.40
2856 4966 8.522003 TCAGTTATGCAAACATATGTTGAACAT 58.478 29.630 21.46 22.82 42.35 2.71
3075 5188 5.048643 GGTTCAAGCCTAAAGAAGAGGAAAC 60.049 44.000 0.00 0.00 35.99 2.78
3215 5328 3.417069 TTGTGACTGACTACAATGGGG 57.583 47.619 0.00 0.00 32.30 4.96
3222 5335 9.821662 GGTAATTTGTTATTTGTGACTGACTAC 57.178 33.333 0.00 0.00 0.00 2.73
3224 5337 8.458573 TGGTAATTTGTTATTTGTGACTGACT 57.541 30.769 0.00 0.00 0.00 3.41
3225 5338 9.691362 AATGGTAATTTGTTATTTGTGACTGAC 57.309 29.630 0.00 0.00 0.00 3.51
3226 5339 9.689976 CAATGGTAATTTGTTATTTGTGACTGA 57.310 29.630 0.00 0.00 0.00 3.41
3227 5340 9.474920 ACAATGGTAATTTGTTATTTGTGACTG 57.525 29.630 0.00 0.00 33.64 3.51
3520 5637 7.214467 ACGGTGAACTGATGATTACAAAAAT 57.786 32.000 0.00 0.00 0.00 1.82
3720 5840 4.144297 TCTGTGGTTTGAGAGGAAAATGG 58.856 43.478 0.00 0.00 0.00 3.16
3722 5842 3.823304 GCTCTGTGGTTTGAGAGGAAAAT 59.177 43.478 0.00 0.00 36.91 1.82
3951 6071 1.080093 GCGACCACGGTTGATCTCA 60.080 57.895 7.70 0.00 40.15 3.27
4114 6237 5.493133 TGATTGTTACACAGGTCACAAAC 57.507 39.130 0.00 0.00 42.52 2.93
4168 6291 2.564062 CCAAAATGGATGAACACCAGCT 59.436 45.455 0.00 0.00 40.96 4.24
4169 6292 2.562298 TCCAAAATGGATGAACACCAGC 59.438 45.455 0.00 0.00 42.67 4.85
4220 6343 1.293924 CATGTCGATGGACCTCTTGC 58.706 55.000 5.33 0.00 42.73 4.01
4233 6356 0.392863 TGGAATGGACCAGCATGTCG 60.393 55.000 0.00 0.00 36.07 4.35
4248 6371 1.406898 TGCGAACTTGCAAACATGGAA 59.593 42.857 0.00 0.00 43.02 3.53
4250 6373 1.001487 TCTGCGAACTTGCAAACATGG 60.001 47.619 0.00 0.00 45.74 3.66
4252 6375 2.358898 ACTTCTGCGAACTTGCAAACAT 59.641 40.909 0.00 0.00 45.74 2.71
4255 6378 1.742831 ACACTTCTGCGAACTTGCAAA 59.257 42.857 0.00 0.00 45.74 3.68
4265 6389 6.292542 CCTTGATGTAATGATACACTTCTGCG 60.293 42.308 0.00 0.00 44.47 5.18
4266 6390 6.017605 CCCTTGATGTAATGATACACTTCTGC 60.018 42.308 0.00 0.00 44.47 4.26
4269 6393 7.047891 TGACCCTTGATGTAATGATACACTTC 58.952 38.462 0.00 0.00 44.47 3.01
4274 6398 5.182001 GCCATGACCCTTGATGTAATGATAC 59.818 44.000 0.00 0.00 27.43 2.24
4306 6436 2.348362 CGAACAGAACGCATCAGCAATA 59.652 45.455 0.00 0.00 42.27 1.90
4314 6444 2.688507 AGACAATCGAACAGAACGCAT 58.311 42.857 0.00 0.00 0.00 4.73
4317 6447 3.363970 CCCAAAGACAATCGAACAGAACG 60.364 47.826 0.00 0.00 0.00 3.95
4344 6474 9.197306 ACATATGTATAGACACCAAACTCTGTA 57.803 33.333 6.56 0.00 38.76 2.74
4347 6477 9.959721 AAAACATATGTATAGACACCAAACTCT 57.040 29.630 9.21 0.00 38.76 3.24
4351 6481 8.661257 CACGAAAACATATGTATAGACACCAAA 58.339 33.333 9.21 0.00 38.76 3.28
4360 6490 5.397240 CGAGTCGCACGAAAACATATGTATA 59.603 40.000 9.21 0.00 0.00 1.47
4362 6492 3.544682 CGAGTCGCACGAAAACATATGTA 59.455 43.478 9.21 0.00 0.00 2.29
4364 6494 2.285026 CCGAGTCGCACGAAAACATATG 60.285 50.000 7.12 0.00 0.00 1.78
4365 6495 1.924524 CCGAGTCGCACGAAAACATAT 59.075 47.619 7.12 0.00 0.00 1.78
4366 6496 1.336148 ACCGAGTCGCACGAAAACATA 60.336 47.619 7.12 0.00 0.00 2.29
4367 6497 0.599204 ACCGAGTCGCACGAAAACAT 60.599 50.000 7.12 0.00 0.00 2.71
4368 6498 1.210545 GACCGAGTCGCACGAAAACA 61.211 55.000 7.12 0.00 0.00 2.83
4369 6499 1.485943 GACCGAGTCGCACGAAAAC 59.514 57.895 7.12 0.00 0.00 2.43
4370 6500 3.926497 GACCGAGTCGCACGAAAA 58.074 55.556 7.12 0.00 0.00 2.29
4379 6509 3.644884 AACATATGGATCGACCGAGTC 57.355 47.619 7.80 0.00 42.61 3.36
4402 6532 2.225068 ACGACATGGAGGATTTAGCG 57.775 50.000 0.00 0.00 0.00 4.26
4405 6535 8.967918 CCTATATCTTACGACATGGAGGATTTA 58.032 37.037 0.00 0.00 0.00 1.40
4407 6537 6.954684 ACCTATATCTTACGACATGGAGGATT 59.045 38.462 0.00 0.00 0.00 3.01
4408 6538 6.494952 ACCTATATCTTACGACATGGAGGAT 58.505 40.000 0.00 0.00 0.00 3.24
4410 6540 6.208797 TGAACCTATATCTTACGACATGGAGG 59.791 42.308 0.00 0.00 0.00 4.30
4411 6541 7.215719 TGAACCTATATCTTACGACATGGAG 57.784 40.000 0.00 0.00 0.00 3.86
4413 6543 8.548721 GTTTTGAACCTATATCTTACGACATGG 58.451 37.037 0.00 0.00 0.00 3.66
4415 6545 9.832445 ATGTTTTGAACCTATATCTTACGACAT 57.168 29.630 0.00 0.00 0.00 3.06
4426 6556 9.031537 TGTCAGTCTCTATGTTTTGAACCTATA 57.968 33.333 0.00 0.00 0.00 1.31
4429 6559 6.174720 TGTCAGTCTCTATGTTTTGAACCT 57.825 37.500 0.00 0.00 0.00 3.50
4430 6560 6.861065 TTGTCAGTCTCTATGTTTTGAACC 57.139 37.500 0.00 0.00 0.00 3.62
4472 6602 8.948145 CCTATATCTTACGACTATGCTACTGTT 58.052 37.037 0.00 0.00 0.00 3.16
4473 6603 8.102047 ACCTATATCTTACGACTATGCTACTGT 58.898 37.037 0.00 0.00 0.00 3.55
4474 6604 8.495361 ACCTATATCTTACGACTATGCTACTG 57.505 38.462 0.00 0.00 0.00 2.74
4475 6605 9.165035 GAACCTATATCTTACGACTATGCTACT 57.835 37.037 0.00 0.00 0.00 2.57
4476 6606 8.944029 TGAACCTATATCTTACGACTATGCTAC 58.056 37.037 0.00 0.00 0.00 3.58
4493 6623 9.031537 TGTCAGTCTCTATGTTTTGAACCTATA 57.968 33.333 0.00 0.00 0.00 1.31
4494 6624 7.907389 TGTCAGTCTCTATGTTTTGAACCTAT 58.093 34.615 0.00 0.00 0.00 2.57
4533 6663 4.690748 GCACACTCTGCTACTGTTATTTCA 59.309 41.667 0.00 0.00 43.33 2.69
4576 6706 3.674753 GTGAAAATGTCTTGCCCATTTCG 59.325 43.478 0.00 0.00 40.62 3.46
4636 6766 0.828677 GTAGCTGTGATTACGGGGGT 59.171 55.000 0.00 0.00 33.62 4.95
4637 6767 1.120530 AGTAGCTGTGATTACGGGGG 58.879 55.000 0.00 0.00 33.62 5.40
4642 6774 1.209504 TGGCCCAGTAGCTGTGATTAC 59.790 52.381 0.00 0.00 0.00 1.89
4670 6802 5.413833 CAGCATCTCAAGGTTGACAACTTAT 59.586 40.000 17.52 2.26 32.90 1.73
4672 6804 3.567164 CAGCATCTCAAGGTTGACAACTT 59.433 43.478 17.52 7.74 32.90 2.66
4673 6805 3.144506 CAGCATCTCAAGGTTGACAACT 58.855 45.455 17.52 1.75 32.90 3.16
4674 6806 3.141398 TCAGCATCTCAAGGTTGACAAC 58.859 45.455 9.97 9.97 32.90 3.32
4678 6810 2.430465 GCTTCAGCATCTCAAGGTTGA 58.570 47.619 0.00 0.00 41.59 3.18
4679 6811 1.471684 GGCTTCAGCATCTCAAGGTTG 59.528 52.381 0.30 0.00 44.36 3.77
4680 6812 1.353694 AGGCTTCAGCATCTCAAGGTT 59.646 47.619 0.30 0.00 44.36 3.50
4681 6813 0.990374 AGGCTTCAGCATCTCAAGGT 59.010 50.000 0.30 0.00 44.36 3.50
4682 6814 3.877951 AGGCTTCAGCATCTCAAGG 57.122 52.632 0.30 0.00 44.36 3.61
4718 6879 1.898472 CTGGAAGAGTCCTGCTTCTGA 59.102 52.381 0.00 0.00 45.22 3.27
4757 6962 3.059597 CAGCAAACGACTGTAAACAGAGG 60.060 47.826 16.74 9.72 46.59 3.69
4758 6963 3.059597 CCAGCAAACGACTGTAAACAGAG 60.060 47.826 16.74 11.76 46.59 3.35
4760 6965 6.591441 GCTCCAGCAAACGACTGTAAACAG 62.591 50.000 8.56 8.56 44.29 3.16
4761 6966 2.869801 CTCCAGCAAACGACTGTAAACA 59.130 45.455 0.00 0.00 33.09 2.83
4762 6967 2.349532 GCTCCAGCAAACGACTGTAAAC 60.350 50.000 0.00 0.00 41.59 2.01
4763 6968 1.871039 GCTCCAGCAAACGACTGTAAA 59.129 47.619 0.00 0.00 41.59 2.01
4839 7060 0.955905 GAAAACAGTTAGGCGCCCAA 59.044 50.000 26.15 14.66 0.00 4.12
4840 7061 0.109723 AGAAAACAGTTAGGCGCCCA 59.890 50.000 26.15 6.66 0.00 5.36
4841 7062 1.244816 AAGAAAACAGTTAGGCGCCC 58.755 50.000 26.15 8.19 0.00 6.13
4849 7070 9.764363 AACAGAAAGAAAGAAAAGAAAACAGTT 57.236 25.926 0.00 0.00 0.00 3.16
4850 7071 9.764363 AAACAGAAAGAAAGAAAAGAAAACAGT 57.236 25.926 0.00 0.00 0.00 3.55
4917 7139 4.929479 TCCACAGGGCTTACAAATACATT 58.071 39.130 0.00 0.00 0.00 2.71
4922 7144 4.837860 TCATTTTCCACAGGGCTTACAAAT 59.162 37.500 0.00 0.00 0.00 2.32
4923 7145 4.219115 TCATTTTCCACAGGGCTTACAAA 58.781 39.130 0.00 0.00 0.00 2.83
4924 7146 3.838565 TCATTTTCCACAGGGCTTACAA 58.161 40.909 0.00 0.00 0.00 2.41
4925 7147 3.517296 TCATTTTCCACAGGGCTTACA 57.483 42.857 0.00 0.00 0.00 2.41
4926 7148 3.572255 TGTTCATTTTCCACAGGGCTTAC 59.428 43.478 0.00 0.00 0.00 2.34
4927 7149 3.838565 TGTTCATTTTCCACAGGGCTTA 58.161 40.909 0.00 0.00 0.00 3.09
4928 7150 2.676748 TGTTCATTTTCCACAGGGCTT 58.323 42.857 0.00 0.00 0.00 4.35
4929 7151 2.380064 TGTTCATTTTCCACAGGGCT 57.620 45.000 0.00 0.00 0.00 5.19
4930 7152 3.467374 TTTGTTCATTTTCCACAGGGC 57.533 42.857 0.00 0.00 0.00 5.19
4931 7153 7.171337 CAGTTAATTTGTTCATTTTCCACAGGG 59.829 37.037 0.00 0.00 0.00 4.45
4932 7154 7.307337 GCAGTTAATTTGTTCATTTTCCACAGG 60.307 37.037 0.00 0.00 0.00 4.00
4933 7155 7.224362 TGCAGTTAATTTGTTCATTTTCCACAG 59.776 33.333 0.00 0.00 0.00 3.66
4934 7156 7.010923 GTGCAGTTAATTTGTTCATTTTCCACA 59.989 33.333 0.00 0.00 0.00 4.17
4935 7157 7.010923 TGTGCAGTTAATTTGTTCATTTTCCAC 59.989 33.333 0.00 0.00 0.00 4.02
4936 7158 7.044181 TGTGCAGTTAATTTGTTCATTTTCCA 58.956 30.769 0.00 0.00 0.00 3.53
4937 7159 7.475771 TGTGCAGTTAATTTGTTCATTTTCC 57.524 32.000 0.00 0.00 0.00 3.13
4938 7160 9.766277 TTTTGTGCAGTTAATTTGTTCATTTTC 57.234 25.926 0.00 0.00 0.00 2.29
4963 7185 9.739276 GGGGAGATTAAAAATTGATTCCTTTTT 57.261 29.630 10.05 10.05 38.00 1.94
4964 7186 8.328758 GGGGGAGATTAAAAATTGATTCCTTTT 58.671 33.333 0.00 0.00 0.00 2.27
4965 7187 7.460722 TGGGGGAGATTAAAAATTGATTCCTTT 59.539 33.333 0.00 0.00 0.00 3.11
4966 7188 6.965272 TGGGGGAGATTAAAAATTGATTCCTT 59.035 34.615 0.00 0.00 0.00 3.36
4967 7189 6.511208 TGGGGGAGATTAAAAATTGATTCCT 58.489 36.000 0.00 0.00 0.00 3.36
4968 7190 6.806668 TGGGGGAGATTAAAAATTGATTCC 57.193 37.500 0.00 0.00 0.00 3.01
4969 7191 9.685276 AAATTGGGGGAGATTAAAAATTGATTC 57.315 29.630 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.